Multiple sequence alignment - TraesCS2B01G451600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G451600 chr2B 100.000 5511 0 0 1 5511 645301238 645306748 0.000000e+00 10178.0
1 TraesCS2B01G451600 chr2B 96.485 882 31 0 1057 1938 645284308 645285189 0.000000e+00 1458.0
2 TraesCS2B01G451600 chr2B 97.832 692 13 2 1 691 645282975 645283665 0.000000e+00 1194.0
3 TraesCS2B01G451600 chr2B 79.786 1311 203 42 1075 2360 644844438 644845711 0.000000e+00 896.0
4 TraesCS2B01G451600 chr2B 79.345 1312 181 56 1075 2356 645470304 645471555 0.000000e+00 839.0
5 TraesCS2B01G451600 chr2B 84.923 650 86 11 1716 2359 644549676 644550319 0.000000e+00 647.0
6 TraesCS2B01G451600 chr2B 96.573 321 8 2 739 1058 645283665 645283983 3.780000e-146 529.0
7 TraesCS2B01G451600 chr2B 88.699 292 25 6 3946 4233 644847323 644847610 3.160000e-92 350.0
8 TraesCS2B01G451600 chr2B 93.868 212 12 1 4310 4520 645474092 645474303 8.910000e-83 318.0
9 TraesCS2B01G451600 chr2B 86.347 271 34 3 4272 4541 644847740 644848008 5.400000e-75 292.0
10 TraesCS2B01G451600 chr2B 83.065 248 35 6 3946 4187 645473848 645474094 9.290000e-53 219.0
11 TraesCS2B01G451600 chr2B 87.302 126 13 3 2563 2687 445683116 445683239 2.070000e-29 141.0
12 TraesCS2B01G451600 chr2B 97.368 38 1 0 1048 1085 715013346 715013309 1.280000e-06 65.8
13 TraesCS2B01G451600 chr2D 91.968 1992 82 26 3231 5162 540194832 540196805 0.000000e+00 2721.0
14 TraesCS2B01G451600 chr2D 93.763 946 53 4 1439 2380 540190245 540191188 0.000000e+00 1415.0
15 TraesCS2B01G451600 chr2D 80.138 1304 185 46 1075 2356 540162061 540163312 0.000000e+00 905.0
16 TraesCS2B01G451600 chr2D 79.697 1320 186 55 1075 2356 540062689 540063964 0.000000e+00 878.0
17 TraesCS2B01G451600 chr2D 92.384 604 37 7 1 598 540189271 540189871 0.000000e+00 852.0
18 TraesCS2B01G451600 chr2D 84.386 570 73 13 3949 4511 540065950 540066510 3.750000e-151 545.0
19 TraesCS2B01G451600 chr2D 83.798 574 76 15 3952 4512 540165315 540165884 3.780000e-146 529.0
20 TraesCS2B01G451600 chr2D 90.332 331 22 5 2681 3008 540192391 540192714 5.100000e-115 425.0
21 TraesCS2B01G451600 chr2D 87.658 316 18 10 611 919 540189856 540190157 1.140000e-91 348.0
22 TraesCS2B01G451600 chr2D 95.455 154 6 1 5359 5511 540196839 540196992 1.530000e-60 244.0
23 TraesCS2B01G451600 chr2D 91.270 126 7 1 2437 2562 540191185 540191306 9.490000e-38 169.0
24 TraesCS2B01G451600 chr2D 93.814 97 3 2 3007 3103 540194590 540194683 5.750000e-30 143.0
25 TraesCS2B01G451600 chr2A 79.727 1317 189 55 1075 2355 683567544 683568818 0.000000e+00 881.0
26 TraesCS2B01G451600 chr2A 78.413 1311 176 64 1075 2356 683626714 683627946 0.000000e+00 754.0
27 TraesCS2B01G451600 chr2A 88.542 288 27 4 3960 4243 683577763 683578048 1.470000e-90 344.0
28 TraesCS2B01G451600 chr2A 92.788 208 14 1 4310 4517 683630090 683630296 3.230000e-77 300.0
29 TraesCS2B01G451600 chr2A 84.298 242 32 5 3946 4187 683629857 683630092 1.190000e-56 231.0
30 TraesCS2B01G451600 chr2A 91.892 111 7 2 2585 2693 619208031 619208141 2.660000e-33 154.0
31 TraesCS2B01G451600 chr5A 98.266 173 3 0 5186 5358 558311919 558312091 2.490000e-78 303.0
32 TraesCS2B01G451600 chr7B 100.000 162 0 0 5198 5359 697582678 697582839 3.230000e-77 300.0
33 TraesCS2B01G451600 chr7B 100.000 161 0 0 5198 5358 617834265 617834105 1.160000e-76 298.0
34 TraesCS2B01G451600 chr7B 97.110 173 3 2 5198 5369 675833506 675833335 1.940000e-74 291.0
35 TraesCS2B01G451600 chr6B 100.000 161 0 0 5198 5358 8141326 8141166 1.160000e-76 298.0
36 TraesCS2B01G451600 chr6B 99.379 161 1 0 5198 5358 701609962 701610122 5.400000e-75 292.0
37 TraesCS2B01G451600 chr6B 94.118 102 6 0 2585 2686 113454745 113454846 7.390000e-34 156.0
38 TraesCS2B01G451600 chr6B 94.000 100 6 0 2583 2682 336181214 336181313 9.560000e-33 152.0
39 TraesCS2B01G451600 chr1B 100.000 161 0 0 5198 5358 13233143 13232983 1.160000e-76 298.0
40 TraesCS2B01G451600 chr1B 94.118 102 5 1 2581 2682 263274067 263273967 2.660000e-33 154.0
41 TraesCS2B01G451600 chr3A 97.093 172 4 1 5198 5368 740691947 740692118 6.980000e-74 289.0
42 TraesCS2B01G451600 chr3A 97.093 172 4 1 5198 5368 740723541 740723712 6.980000e-74 289.0
43 TraesCS2B01G451600 chr3A 95.918 98 4 0 2585 2682 710276330 710276427 5.710000e-35 159.0
44 TraesCS2B01G451600 chr1D 94.231 104 6 0 2585 2688 478256555 478256452 5.710000e-35 159.0
45 TraesCS2B01G451600 chr6A 91.743 109 7 2 2574 2682 315625372 315625266 3.440000e-32 150.0
46 TraesCS2B01G451600 chr6A 90.179 112 11 0 2581 2692 228534738 228534627 4.450000e-31 147.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G451600 chr2B 645301238 645306748 5510 False 10178.000000 10178 100.000000 1 5511 1 chr2B.!!$F3 5510
1 TraesCS2B01G451600 chr2B 645282975 645285189 2214 False 1060.333333 1458 96.963333 1 1938 3 chr2B.!!$F5 1937
2 TraesCS2B01G451600 chr2B 644549676 644550319 643 False 647.000000 647 84.923000 1716 2359 1 chr2B.!!$F2 643
3 TraesCS2B01G451600 chr2B 644844438 644848008 3570 False 512.666667 896 84.944000 1075 4541 3 chr2B.!!$F4 3466
4 TraesCS2B01G451600 chr2B 645470304 645474303 3999 False 458.666667 839 85.426000 1075 4520 3 chr2B.!!$F6 3445
5 TraesCS2B01G451600 chr2D 540189271 540196992 7721 False 789.625000 2721 92.080500 1 5511 8 chr2D.!!$F3 5510
6 TraesCS2B01G451600 chr2D 540162061 540165884 3823 False 717.000000 905 81.968000 1075 4512 2 chr2D.!!$F2 3437
7 TraesCS2B01G451600 chr2D 540062689 540066510 3821 False 711.500000 878 82.041500 1075 4511 2 chr2D.!!$F1 3436
8 TraesCS2B01G451600 chr2A 683567544 683568818 1274 False 881.000000 881 79.727000 1075 2355 1 chr2A.!!$F2 1280
9 TraesCS2B01G451600 chr2A 683626714 683630296 3582 False 428.333333 754 85.166333 1075 4517 3 chr2A.!!$F4 3442

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
154 155 1.045350 TCAGGGGAATCTCTCAGCGG 61.045 60.000 0.00 0.00 0.0 5.52 F
959 990 3.346315 TGACGGACGTCTCCACTTTATA 58.654 45.455 23.18 0.00 44.8 0.98 F
2427 2889 0.248289 GCTCCCACGTGGCTAACTAA 59.752 55.000 29.75 6.56 0.0 2.24 F
3110 6687 0.173481 TCTCTGATGAACCGGCGAAG 59.827 55.000 9.30 0.00 0.0 3.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1007 1038 1.198408 GGGGTTTACGTGCACTAAAGC 59.802 52.381 25.92 25.92 32.95 3.51 R
2839 4453 0.037605 ATTCAACGTCGTCCCACTCC 60.038 55.000 0.00 0.00 0.00 3.85 R
3466 7098 0.041238 AAGGGATGTGGAGTCGAGGA 59.959 55.000 0.00 0.00 0.00 3.71 R
4621 11347 0.591659 GCAGGTGGAAGGTTTCGTTC 59.408 55.000 0.00 0.00 0.00 3.95 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
154 155 1.045350 TCAGGGGAATCTCTCAGCGG 61.045 60.000 0.00 0.00 0.00 5.52
211 212 4.043596 AGAGTTTTAGCTCCATCTCCCAT 58.956 43.478 0.00 0.00 36.20 4.00
475 479 5.767816 ATACTCCAAAGTCCAAACACAAC 57.232 39.130 0.00 0.00 36.92 3.32
702 708 7.421613 CGGAAAATATAAACTTTGAACTCGACG 59.578 37.037 0.00 0.00 0.00 5.12
720 729 3.605056 CGACGATGCTCACGTAACTTTTA 59.395 43.478 0.00 0.00 43.97 1.52
728 737 7.551035 TGCTCACGTAACTTTTACCTTTTTA 57.449 32.000 0.00 0.00 0.00 1.52
730 739 7.495279 TGCTCACGTAACTTTTACCTTTTTAGA 59.505 33.333 0.00 0.00 0.00 2.10
959 990 3.346315 TGACGGACGTCTCCACTTTATA 58.654 45.455 23.18 0.00 44.80 0.98
1072 1429 4.339872 AACAATAGTACACGAACCCACA 57.660 40.909 0.00 0.00 0.00 4.17
1350 1728 1.664649 CGAGCTCAAGTTCCGTGCA 60.665 57.895 15.40 0.00 0.00 4.57
1594 1984 0.598680 AAGCATATCGCAGCGAGTCC 60.599 55.000 24.08 11.09 46.13 3.85
1975 2401 2.267006 GGCTGCAGCTGCTACTCA 59.733 61.111 36.61 17.40 42.66 3.41
1983 2409 1.817099 GCTGCTACTCATGCCGCTT 60.817 57.895 0.00 0.00 37.60 4.68
1989 2415 2.291457 TACTCATGCCGCTTGCGCTA 62.291 55.000 9.73 0.00 45.60 4.26
2013 2439 2.502093 AACACGCTGTTCCCGACA 59.498 55.556 0.00 0.00 35.27 4.35
2116 2542 1.063867 AGCTGACGGGGTACTATCACT 60.064 52.381 0.00 0.00 0.00 3.41
2121 2547 2.954318 GACGGGGTACTATCACTTGCTA 59.046 50.000 0.00 0.00 0.00 3.49
2124 2550 2.367894 GGGGTACTATCACTTGCTACCC 59.632 54.545 3.94 3.94 44.18 3.69
2337 2763 0.807667 CGGCCATTCTCGTCCTCTTG 60.808 60.000 2.24 0.00 0.00 3.02
2373 2799 6.992123 TGTGAGTCATCTTTCTCTTTAGCAAA 59.008 34.615 0.00 0.00 0.00 3.68
2374 2800 7.663081 TGTGAGTCATCTTTCTCTTTAGCAAAT 59.337 33.333 0.00 0.00 0.00 2.32
2376 2802 7.879677 TGAGTCATCTTTCTCTTTAGCAAATCA 59.120 33.333 0.00 0.00 0.00 2.57
2378 2804 6.966066 GTCATCTTTCTCTTTAGCAAATCAGC 59.034 38.462 0.00 0.00 0.00 4.26
2380 2806 6.492007 TCTTTCTCTTTAGCAAATCAGCTG 57.508 37.500 7.63 7.63 46.11 4.24
2382 2808 3.012518 TCTCTTTAGCAAATCAGCTGCC 58.987 45.455 9.47 0.00 46.11 4.85
2383 2809 3.015327 CTCTTTAGCAAATCAGCTGCCT 58.985 45.455 9.47 2.58 46.11 4.75
2385 2811 3.192001 TCTTTAGCAAATCAGCTGCCTTG 59.808 43.478 9.47 15.16 46.11 3.61
2386 2812 0.813184 TAGCAAATCAGCTGCCTTGC 59.187 50.000 30.19 30.19 46.11 4.01
2401 2863 1.203928 CTTGCCGATGCTTACGAGAG 58.796 55.000 0.00 0.00 38.71 3.20
2410 2872 2.679059 ATGCTTACGAGAGTGCAATGCT 60.679 45.455 6.82 0.00 44.57 3.79
2413 2875 1.078848 ACGAGAGTGCAATGCTCCC 60.079 57.895 6.82 0.00 46.97 4.30
2415 2877 1.364626 CGAGAGTGCAATGCTCCCAC 61.365 60.000 6.82 0.00 33.69 4.61
2416 2878 1.364626 GAGAGTGCAATGCTCCCACG 61.365 60.000 6.82 0.00 34.79 4.94
2417 2879 1.672356 GAGTGCAATGCTCCCACGT 60.672 57.895 6.82 0.00 34.79 4.49
2418 2880 1.915614 GAGTGCAATGCTCCCACGTG 61.916 60.000 9.08 9.08 34.79 4.49
2420 2882 4.120331 GCAATGCTCCCACGTGGC 62.120 66.667 29.75 18.24 0.00 5.01
2424 2886 0.676782 AATGCTCCCACGTGGCTAAC 60.677 55.000 29.75 17.34 0.00 2.34
2426 2888 0.901114 TGCTCCCACGTGGCTAACTA 60.901 55.000 29.75 9.57 0.00 2.24
2427 2889 0.248289 GCTCCCACGTGGCTAACTAA 59.752 55.000 29.75 6.56 0.00 2.24
2429 2891 2.679930 GCTCCCACGTGGCTAACTAATT 60.680 50.000 29.75 0.00 0.00 1.40
2430 2892 3.431207 GCTCCCACGTGGCTAACTAATTA 60.431 47.826 29.75 2.64 0.00 1.40
2433 2895 3.624410 CCCACGTGGCTAACTAATTAACC 59.376 47.826 29.75 0.00 0.00 2.85
2477 3021 5.815233 TTCCCTTCATGATTCCTAGCTAG 57.185 43.478 14.20 14.20 0.00 3.42
2478 3022 3.580458 TCCCTTCATGATTCCTAGCTAGC 59.420 47.826 15.74 6.62 0.00 3.42
2479 3023 3.582208 CCCTTCATGATTCCTAGCTAGCT 59.418 47.826 23.12 23.12 0.00 3.32
2480 3024 4.563168 CCCTTCATGATTCCTAGCTAGCTG 60.563 50.000 27.68 16.13 0.00 4.24
2497 3041 6.891908 AGCTAGCTGGGATTTTATTTTTCTCA 59.108 34.615 18.57 0.00 0.00 3.27
2506 3050 7.062255 GGGATTTTATTTTTCTCAGTTTCTGCG 59.938 37.037 0.00 0.00 0.00 5.18
2580 4193 2.972625 TGCTGACTATACTGTGCAACC 58.027 47.619 0.00 0.00 34.36 3.77
2581 4194 2.301583 TGCTGACTATACTGTGCAACCA 59.698 45.455 0.00 0.00 34.36 3.67
2582 4195 3.244387 TGCTGACTATACTGTGCAACCAA 60.244 43.478 0.00 0.00 34.36 3.67
2583 4196 3.125316 GCTGACTATACTGTGCAACCAAC 59.875 47.826 0.00 0.00 34.36 3.77
2584 4197 4.314961 CTGACTATACTGTGCAACCAACA 58.685 43.478 0.00 0.00 34.36 3.33
2585 4198 4.905429 TGACTATACTGTGCAACCAACAT 58.095 39.130 0.00 0.00 34.36 2.71
2586 4199 6.043854 TGACTATACTGTGCAACCAACATA 57.956 37.500 0.00 0.00 34.36 2.29
2587 4200 5.872617 TGACTATACTGTGCAACCAACATAC 59.127 40.000 0.00 0.00 34.36 2.39
2588 4201 6.049955 ACTATACTGTGCAACCAACATACT 57.950 37.500 0.00 0.00 34.36 2.12
2589 4202 6.106673 ACTATACTGTGCAACCAACATACTC 58.893 40.000 0.00 0.00 34.36 2.59
2590 4203 2.504367 ACTGTGCAACCAACATACTCC 58.496 47.619 0.00 0.00 34.36 3.85
2591 4204 1.812571 CTGTGCAACCAACATACTCCC 59.187 52.381 0.00 0.00 34.36 4.30
2592 4205 1.423541 TGTGCAACCAACATACTCCCT 59.576 47.619 0.00 0.00 34.36 4.20
2593 4206 2.084546 GTGCAACCAACATACTCCCTC 58.915 52.381 0.00 0.00 0.00 4.30
2594 4207 1.004277 TGCAACCAACATACTCCCTCC 59.996 52.381 0.00 0.00 0.00 4.30
2595 4208 2.012051 GCAACCAACATACTCCCTCCG 61.012 57.143 0.00 0.00 0.00 4.63
2596 4209 1.278127 CAACCAACATACTCCCTCCGT 59.722 52.381 0.00 0.00 0.00 4.69
2597 4210 1.652947 ACCAACATACTCCCTCCGTT 58.347 50.000 0.00 0.00 0.00 4.44
2598 4211 1.553704 ACCAACATACTCCCTCCGTTC 59.446 52.381 0.00 0.00 0.00 3.95
2599 4212 1.134491 CCAACATACTCCCTCCGTTCC 60.134 57.143 0.00 0.00 0.00 3.62
2600 4213 1.553248 CAACATACTCCCTCCGTTCCA 59.447 52.381 0.00 0.00 0.00 3.53
2601 4214 1.946984 ACATACTCCCTCCGTTCCAA 58.053 50.000 0.00 0.00 0.00 3.53
2602 4215 2.262637 ACATACTCCCTCCGTTCCAAA 58.737 47.619 0.00 0.00 0.00 3.28
2603 4216 2.640826 ACATACTCCCTCCGTTCCAAAA 59.359 45.455 0.00 0.00 0.00 2.44
2604 4217 3.265995 ACATACTCCCTCCGTTCCAAAAT 59.734 43.478 0.00 0.00 0.00 1.82
2605 4218 4.472108 ACATACTCCCTCCGTTCCAAAATA 59.528 41.667 0.00 0.00 0.00 1.40
2606 4219 5.045432 ACATACTCCCTCCGTTCCAAAATAA 60.045 40.000 0.00 0.00 0.00 1.40
2607 4220 4.376225 ACTCCCTCCGTTCCAAAATAAA 57.624 40.909 0.00 0.00 0.00 1.40
2608 4221 4.930696 ACTCCCTCCGTTCCAAAATAAAT 58.069 39.130 0.00 0.00 0.00 1.40
2609 4222 4.705023 ACTCCCTCCGTTCCAAAATAAATG 59.295 41.667 0.00 0.00 0.00 2.32
2610 4223 4.668636 TCCCTCCGTTCCAAAATAAATGT 58.331 39.130 0.00 0.00 0.00 2.71
2611 4224 4.703093 TCCCTCCGTTCCAAAATAAATGTC 59.297 41.667 0.00 0.00 0.00 3.06
2612 4225 4.705023 CCCTCCGTTCCAAAATAAATGTCT 59.295 41.667 0.00 0.00 0.00 3.41
2613 4226 5.185056 CCCTCCGTTCCAAAATAAATGTCTT 59.815 40.000 0.00 0.00 0.00 3.01
2614 4227 6.092748 CCTCCGTTCCAAAATAAATGTCTTG 58.907 40.000 0.00 0.00 0.00 3.02
2615 4228 6.072175 CCTCCGTTCCAAAATAAATGTCTTGA 60.072 38.462 0.00 0.00 0.00 3.02
2616 4229 6.674066 TCCGTTCCAAAATAAATGTCTTGAC 58.326 36.000 0.00 0.00 0.00 3.18
2617 4230 5.861787 CCGTTCCAAAATAAATGTCTTGACC 59.138 40.000 0.00 0.00 0.00 4.02
2618 4231 6.294508 CCGTTCCAAAATAAATGTCTTGACCT 60.295 38.462 0.00 0.00 0.00 3.85
2619 4232 7.145323 CGTTCCAAAATAAATGTCTTGACCTT 58.855 34.615 0.00 0.00 0.00 3.50
2620 4233 8.293867 CGTTCCAAAATAAATGTCTTGACCTTA 58.706 33.333 0.00 0.00 0.00 2.69
2621 4234 9.626045 GTTCCAAAATAAATGTCTTGACCTTAG 57.374 33.333 0.00 0.00 0.00 2.18
2622 4235 8.934023 TCCAAAATAAATGTCTTGACCTTAGT 57.066 30.769 0.00 0.00 0.00 2.24
2657 4270 7.148355 ACTAGAGCTAGTACAAAGTTGAGAC 57.852 40.000 8.35 0.00 43.98 3.36
2658 4271 6.715718 ACTAGAGCTAGTACAAAGTTGAGACA 59.284 38.462 8.35 0.00 43.98 3.41
2659 4272 5.774630 AGAGCTAGTACAAAGTTGAGACAC 58.225 41.667 0.00 0.00 0.00 3.67
2660 4273 5.536916 AGAGCTAGTACAAAGTTGAGACACT 59.463 40.000 0.00 0.00 0.00 3.55
2661 4274 6.041069 AGAGCTAGTACAAAGTTGAGACACTT 59.959 38.462 0.00 0.00 38.74 3.16
2662 4275 7.230913 AGAGCTAGTACAAAGTTGAGACACTTA 59.769 37.037 0.00 0.00 35.87 2.24
2663 4276 7.897864 AGCTAGTACAAAGTTGAGACACTTAT 58.102 34.615 0.00 0.00 35.87 1.73
2664 4277 8.368668 AGCTAGTACAAAGTTGAGACACTTATT 58.631 33.333 0.00 0.00 35.87 1.40
2665 4278 8.989980 GCTAGTACAAAGTTGAGACACTTATTT 58.010 33.333 0.00 0.00 35.87 1.40
2674 4287 7.215085 AGTTGAGACACTTATTTTAAGACGGT 58.785 34.615 1.47 0.00 0.00 4.83
2679 4292 5.243207 ACACTTATTTTAAGACGGTGGGAG 58.757 41.667 1.47 0.00 0.00 4.30
2696 4309 6.073980 CGGTGGGAGTACAATATAAATTGACG 60.074 42.308 5.18 0.00 44.50 4.35
2701 4314 7.095607 GGGAGTACAATATAAATTGACGAGCTG 60.096 40.741 0.00 0.00 44.50 4.24
2738 4352 1.891722 CTCCAGCCAAAACCCCATGC 61.892 60.000 0.00 0.00 0.00 4.06
2740 4354 2.203625 AGCCAAAACCCCATGCGT 60.204 55.556 0.00 0.00 0.00 5.24
2741 4355 2.048316 GCCAAAACCCCATGCGTG 60.048 61.111 0.00 0.00 0.00 5.34
2765 4379 4.097892 TCTTCTGCTCATAGCGACATTGTA 59.902 41.667 0.00 0.00 46.26 2.41
2805 4419 5.824904 AGTGGCATCAATCAATGTACTTC 57.175 39.130 0.00 0.00 0.00 3.01
2807 4421 5.587844 AGTGGCATCAATCAATGTACTTCTC 59.412 40.000 0.00 0.00 0.00 2.87
2834 4448 4.864334 GAGGCTCGCATGGGTGGG 62.864 72.222 9.86 3.15 39.47 4.61
2838 4452 4.802051 CTCGCATGGGTGGGGGTG 62.802 72.222 9.86 0.00 38.70 4.61
2842 4456 3.743017 CATGGGTGGGGGTGGGAG 61.743 72.222 0.00 0.00 0.00 4.30
2843 4457 4.301662 ATGGGTGGGGGTGGGAGT 62.302 66.667 0.00 0.00 0.00 3.85
2869 4483 2.413112 CGACGTTGAATCATTGAGCAGT 59.587 45.455 0.00 0.00 0.00 4.40
2876 4490 6.256539 CGTTGAATCATTGAGCAGTAGTACAT 59.743 38.462 2.52 0.00 0.00 2.29
2893 4507 1.269883 ACATCTTGTGCGTACAACGGA 60.270 47.619 15.43 12.36 41.66 4.69
2914 4528 1.521681 AGCGCCAACGAGCTATTCC 60.522 57.895 2.29 0.00 44.06 3.01
2920 4534 2.555199 CCAACGAGCTATTCCCTCAAG 58.445 52.381 0.00 0.00 0.00 3.02
2923 4537 4.253685 CAACGAGCTATTCCCTCAAGAAA 58.746 43.478 0.00 0.00 0.00 2.52
3009 4625 2.882137 ACGGCCATTAATTATCCCGTTG 59.118 45.455 2.24 0.00 45.70 4.10
3010 4626 2.227865 CGGCCATTAATTATCCCGTTGG 59.772 50.000 2.24 0.00 0.00 3.77
3011 4627 2.029380 GGCCATTAATTATCCCGTTGGC 60.029 50.000 0.00 2.48 45.73 4.52
3012 4628 2.351350 GCCATTAATTATCCCGTTGGCG 60.351 50.000 0.00 0.00 38.82 5.69
3048 6625 1.447663 CATGCATGTGACGGACGGA 60.448 57.895 18.91 0.00 0.00 4.69
3103 6680 1.673168 GTGCCCATCTCTGATGAACC 58.327 55.000 8.91 0.00 0.00 3.62
3105 6682 0.533755 GCCCATCTCTGATGAACCGG 60.534 60.000 0.00 0.00 0.00 5.28
3106 6683 0.533755 CCCATCTCTGATGAACCGGC 60.534 60.000 0.00 0.00 0.00 6.13
3107 6684 0.877649 CCATCTCTGATGAACCGGCG 60.878 60.000 0.00 0.00 0.00 6.46
3110 6687 0.173481 TCTCTGATGAACCGGCGAAG 59.827 55.000 9.30 0.00 0.00 3.79
3114 6691 0.461870 TGATGAACCGGCGAAGATGG 60.462 55.000 9.30 0.00 0.00 3.51
3115 6692 1.153168 ATGAACCGGCGAAGATGGG 60.153 57.895 9.30 0.00 0.00 4.00
3116 6693 3.202706 GAACCGGCGAAGATGGGC 61.203 66.667 9.30 0.00 0.00 5.36
3122 6699 2.203126 GCGAAGATGGGCCAGGAG 60.203 66.667 13.78 2.52 0.00 3.69
3123 6700 2.203126 CGAAGATGGGCCAGGAGC 60.203 66.667 13.78 0.97 42.60 4.70
3124 6701 2.739996 CGAAGATGGGCCAGGAGCT 61.740 63.158 13.78 3.62 43.05 4.09
3125 6702 1.153005 GAAGATGGGCCAGGAGCTG 60.153 63.158 13.78 0.00 43.05 4.24
3142 6719 1.238439 CTGGTGGAGCATCGTTTTGT 58.762 50.000 0.00 0.00 34.37 2.83
3143 6720 0.950836 TGGTGGAGCATCGTTTTGTG 59.049 50.000 0.00 0.00 34.37 3.33
3144 6721 0.387239 GGTGGAGCATCGTTTTGTGC 60.387 55.000 0.00 0.00 41.57 4.57
3145 6722 0.310543 GTGGAGCATCGTTTTGTGCA 59.689 50.000 0.00 0.00 43.63 4.57
3146 6723 1.068333 GTGGAGCATCGTTTTGTGCAT 60.068 47.619 0.00 0.00 43.63 3.96
3147 6724 1.068402 TGGAGCATCGTTTTGTGCATG 60.068 47.619 0.00 0.00 43.63 4.06
3148 6725 1.621107 GAGCATCGTTTTGTGCATGG 58.379 50.000 0.00 0.00 43.63 3.66
3149 6726 0.388907 AGCATCGTTTTGTGCATGGC 60.389 50.000 0.00 0.00 43.63 4.40
3150 6727 0.388907 GCATCGTTTTGTGCATGGCT 60.389 50.000 0.00 0.00 40.94 4.75
3151 6728 1.342555 CATCGTTTTGTGCATGGCTG 58.657 50.000 0.00 0.00 0.00 4.85
3152 6729 0.961019 ATCGTTTTGTGCATGGCTGT 59.039 45.000 0.00 0.00 0.00 4.40
3153 6730 0.743688 TCGTTTTGTGCATGGCTGTT 59.256 45.000 0.00 0.00 0.00 3.16
3154 6731 1.950216 TCGTTTTGTGCATGGCTGTTA 59.050 42.857 0.00 0.00 0.00 2.41
3155 6732 2.031245 TCGTTTTGTGCATGGCTGTTAG 60.031 45.455 0.00 0.00 0.00 2.34
3156 6733 2.287547 CGTTTTGTGCATGGCTGTTAGT 60.288 45.455 0.00 0.00 0.00 2.24
3157 6734 3.716601 GTTTTGTGCATGGCTGTTAGTT 58.283 40.909 0.00 0.00 0.00 2.24
3158 6735 4.555708 CGTTTTGTGCATGGCTGTTAGTTA 60.556 41.667 0.00 0.00 0.00 2.24
3159 6736 5.285651 GTTTTGTGCATGGCTGTTAGTTAA 58.714 37.500 0.00 0.00 0.00 2.01
3160 6737 4.764679 TTGTGCATGGCTGTTAGTTAAG 57.235 40.909 0.00 0.00 0.00 1.85
3161 6738 4.014569 TGTGCATGGCTGTTAGTTAAGA 57.985 40.909 0.00 0.00 0.00 2.10
3171 6748 5.395435 GGCTGTTAGTTAAGACTTAGGGGAG 60.395 48.000 0.00 0.00 37.33 4.30
3172 6749 5.662456 CTGTTAGTTAAGACTTAGGGGAGC 58.338 45.833 0.00 0.00 37.33 4.70
3200 6777 4.095185 CCGGAAATTAATAGACCGTTTGCA 59.905 41.667 19.14 0.00 41.67 4.08
3203 6780 6.402766 CGGAAATTAATAGACCGTTTGCAAGA 60.403 38.462 15.17 0.00 38.97 3.02
3208 6785 3.595108 GACCGTTTGCAAGAGCCGC 62.595 63.158 0.00 0.00 41.13 6.53
3211 6788 4.404654 GTTTGCAAGAGCCGCGGG 62.405 66.667 29.38 11.04 41.13 6.13
3215 6792 3.577313 GCAAGAGCCGCGGGATTC 61.577 66.667 29.38 10.23 33.58 2.52
3222 6799 2.353145 CCGCGGGATTCGAGTACG 60.353 66.667 20.10 0.98 42.43 3.67
3224 6801 1.643292 CGCGGGATTCGAGTACGTA 59.357 57.895 0.00 0.00 42.43 3.57
3225 6802 0.655626 CGCGGGATTCGAGTACGTAC 60.656 60.000 18.10 18.10 42.43 3.67
3226 6803 0.655626 GCGGGATTCGAGTACGTACG 60.656 60.000 19.49 15.01 42.43 3.67
3229 6806 1.268234 GGGATTCGAGTACGTACGGTG 60.268 57.143 21.06 13.19 40.69 4.94
3240 6864 1.614903 ACGTACGGTGAGTCATTCCAA 59.385 47.619 21.06 0.00 0.00 3.53
3267 6891 7.103641 AGTGAAAGCGAAAGATGTAAATAGGA 58.896 34.615 0.00 0.00 0.00 2.94
3297 6921 3.070018 GGCTTACATGAAGATCCATCCG 58.930 50.000 0.00 0.00 37.33 4.18
3303 6927 3.070159 ACATGAAGATCCATCCGTAGTGG 59.930 47.826 0.00 0.00 38.11 4.00
3304 6928 1.412710 TGAAGATCCATCCGTAGTGGC 59.587 52.381 0.00 0.00 36.66 5.01
3305 6929 1.412710 GAAGATCCATCCGTAGTGGCA 59.587 52.381 0.00 0.00 36.66 4.92
3306 6930 0.753262 AGATCCATCCGTAGTGGCAC 59.247 55.000 10.29 10.29 36.66 5.01
3372 6996 1.745489 GTGGTTGGACCGGATCAGC 60.745 63.158 9.46 7.81 42.58 4.26
3454 7086 4.364409 GCGACACGACCAAACGGC 62.364 66.667 0.00 0.00 37.61 5.68
3632 7288 1.597027 ACGCCGCTGCTGTTACTTT 60.597 52.632 0.00 0.00 34.43 2.66
3695 7355 4.235762 TGATAAGCGAGCGGGCCC 62.236 66.667 13.57 13.57 0.00 5.80
3761 7427 0.463204 CACTCGCTGGTCCATGAGAT 59.537 55.000 21.98 8.54 32.81 2.75
3794 7464 1.089920 CGCCAACTTCTGCAGCTATT 58.910 50.000 9.47 0.00 0.00 1.73
3862 7532 7.614674 GAAAACTGAATTAGTGTTCTTGCAG 57.385 36.000 1.30 0.00 46.08 4.41
3864 7534 4.718961 ACTGAATTAGTGTTCTTGCAGGT 58.281 39.130 0.00 0.00 38.49 4.00
3901 7571 3.702330 CAACACCTAATCATGCATGCTG 58.298 45.455 22.25 14.33 0.00 4.41
3932 10207 4.331168 AGATTTTCAGAGAGTATTGCACGC 59.669 41.667 0.00 0.00 0.00 5.34
3947 10222 1.021390 CACGCAAGGGTCACTGATCC 61.021 60.000 0.00 0.00 46.39 3.36
4039 10665 3.698263 ATCCCACGGAGGAGACCCC 62.698 68.421 1.98 0.00 39.95 4.95
4196 10822 4.021925 GTCGTCAGGCAAGCCCCT 62.022 66.667 7.62 0.00 36.58 4.79
4208 10834 1.818674 CAAGCCCCTTCTAACGCAAAT 59.181 47.619 0.00 0.00 0.00 2.32
4212 10838 2.159379 GCCCCTTCTAACGCAAATCAAG 60.159 50.000 0.00 0.00 0.00 3.02
4239 10867 8.687824 AAGCCTGAAAACGAATAACAAATATG 57.312 30.769 0.00 0.00 0.00 1.78
4259 10887 0.949105 ACTGCAACTTAGTTCCGGCG 60.949 55.000 0.00 0.00 0.00 6.46
4289 11009 2.995283 TCCTTCATGGAAGCTGACATG 58.005 47.619 19.58 19.58 42.94 3.21
4299 11019 3.507622 GGAAGCTGACATGTTTTAGCCTT 59.492 43.478 20.29 15.42 36.86 4.35
4307 11027 5.048083 TGACATGTTTTAGCCTTCACATTCC 60.048 40.000 0.00 0.00 0.00 3.01
4374 11094 4.148825 ACAGATCAGCCCGGACGC 62.149 66.667 0.73 0.00 0.00 5.19
4480 11200 3.369892 GGAGGCTCAAGAAGTTCAGCATA 60.370 47.826 17.69 0.00 33.22 3.14
4517 11237 2.305635 TGGAAGCTTGGTTAGATGCAGA 59.694 45.455 2.10 0.00 0.00 4.26
4518 11238 2.680339 GGAAGCTTGGTTAGATGCAGAC 59.320 50.000 2.10 0.00 0.00 3.51
4544 11265 1.890625 GCCATTGCATTGCAGGTGGA 61.891 55.000 32.36 13.95 43.74 4.02
4568 11289 3.494251 GGTCATGTTGTTTTGTGAATGGC 59.506 43.478 0.00 0.00 0.00 4.40
4569 11290 4.370917 GTCATGTTGTTTTGTGAATGGCT 58.629 39.130 0.00 0.00 0.00 4.75
4571 11292 5.294060 GTCATGTTGTTTTGTGAATGGCTTT 59.706 36.000 0.00 0.00 0.00 3.51
4572 11293 5.523188 TCATGTTGTTTTGTGAATGGCTTTC 59.477 36.000 6.20 6.20 34.72 2.62
4575 11296 5.105392 TGTTGTTTTGTGAATGGCTTTCTCT 60.105 36.000 13.47 0.00 35.23 3.10
4576 11297 5.596836 TGTTTTGTGAATGGCTTTCTCTT 57.403 34.783 13.47 0.00 35.23 2.85
4578 11299 4.853924 TTTGTGAATGGCTTTCTCTTCC 57.146 40.909 13.47 0.00 35.23 3.46
4579 11300 2.795329 TGTGAATGGCTTTCTCTTCCC 58.205 47.619 13.47 0.00 35.23 3.97
4584 11310 4.524328 TGAATGGCTTTCTCTTCCCTTTTC 59.476 41.667 13.47 0.00 35.23 2.29
4586 11312 1.813178 GGCTTTCTCTTCCCTTTTCCG 59.187 52.381 0.00 0.00 0.00 4.30
4606 11332 4.081862 TCCGTACCTTCCATCTTTGTGTAG 60.082 45.833 0.00 0.00 0.00 2.74
4611 11337 5.248640 ACCTTCCATCTTTGTGTAGTCATG 58.751 41.667 0.00 0.00 0.00 3.07
4621 11347 3.925379 TGTGTAGTCATGTAAGGTGCAG 58.075 45.455 0.00 0.00 0.00 4.41
4624 11350 4.389077 GTGTAGTCATGTAAGGTGCAGAAC 59.611 45.833 0.00 0.00 0.00 3.01
4643 11369 1.515521 CGAAACCTTCCACCTGCCAC 61.516 60.000 0.00 0.00 0.00 5.01
4749 11480 3.244422 CCTGGTGGTTTGCTAGTCACTTA 60.244 47.826 0.00 0.00 0.00 2.24
4750 11481 3.735591 TGGTGGTTTGCTAGTCACTTAC 58.264 45.455 0.00 0.00 0.00 2.34
4760 11491 5.925509 TGCTAGTCACTTACTCCAAAAAGT 58.074 37.500 0.00 0.00 39.80 2.66
4859 11591 1.678728 GCTCACATTGGATGTCCGGAA 60.679 52.381 5.23 0.00 42.70 4.30
4862 11594 2.039746 TCACATTGGATGTCCGGAAGTT 59.960 45.455 5.23 0.00 42.70 2.66
4863 11595 2.420022 CACATTGGATGTCCGGAAGTTC 59.580 50.000 5.23 3.01 42.70 3.01
4875 11607 0.110486 GGAAGTTCCTGAGGCCACAA 59.890 55.000 15.09 0.00 32.53 3.33
4876 11608 1.528129 GAAGTTCCTGAGGCCACAAG 58.472 55.000 5.01 0.00 0.00 3.16
4940 11672 4.595986 ACCTCACTAACCACACACTTTTT 58.404 39.130 0.00 0.00 0.00 1.94
4943 11675 5.220854 CCTCACTAACCACACACTTTTTCTG 60.221 44.000 0.00 0.00 0.00 3.02
5034 11767 5.189145 GGAGGATAAGAAAAGTCCCACTACA 59.811 44.000 0.00 0.00 32.31 2.74
5059 11792 5.545658 TGTATTCGCTTGAACATTCCTTC 57.454 39.130 0.00 0.00 33.63 3.46
5063 11796 1.464687 CGCTTGAACATTCCTTCGCAG 60.465 52.381 0.00 0.00 0.00 5.18
5162 11896 0.749049 GCCCAGAAAATCCCAGCATC 59.251 55.000 0.00 0.00 0.00 3.91
5165 11899 3.902218 CCCAGAAAATCCCAGCATCTAA 58.098 45.455 0.00 0.00 0.00 2.10
5167 11901 4.522022 CCCAGAAAATCCCAGCATCTAATC 59.478 45.833 0.00 0.00 0.00 1.75
5169 11903 5.595542 CCAGAAAATCCCAGCATCTAATCAA 59.404 40.000 0.00 0.00 0.00 2.57
5170 11904 6.238953 CCAGAAAATCCCAGCATCTAATCAAG 60.239 42.308 0.00 0.00 0.00 3.02
5201 11952 7.825627 CAAATTTTGCACTGTTTCAAATAGC 57.174 32.000 0.00 0.00 32.92 2.97
5202 11953 7.408123 CAAATTTTGCACTGTTTCAAATAGCA 58.592 30.769 0.00 0.00 32.92 3.49
5203 11954 5.964887 TTTTGCACTGTTTCAAATAGCAC 57.035 34.783 0.00 0.00 32.92 4.40
5204 11955 3.266541 TGCACTGTTTCAAATAGCACG 57.733 42.857 0.00 0.00 0.00 5.34
5205 11956 1.978782 GCACTGTTTCAAATAGCACGC 59.021 47.619 0.00 0.00 0.00 5.34
5206 11957 2.350772 GCACTGTTTCAAATAGCACGCT 60.351 45.455 0.00 0.00 0.00 5.07
5207 11958 3.120338 GCACTGTTTCAAATAGCACGCTA 60.120 43.478 0.39 0.39 0.00 4.26
5208 11959 4.437390 GCACTGTTTCAAATAGCACGCTAT 60.437 41.667 5.72 5.72 40.63 2.97
5209 11960 5.220586 GCACTGTTTCAAATAGCACGCTATA 60.221 40.000 11.80 0.00 38.20 1.31
5210 11961 6.414079 CACTGTTTCAAATAGCACGCTATAG 58.586 40.000 11.80 8.20 38.20 1.31
5211 11962 5.006746 ACTGTTTCAAATAGCACGCTATAGC 59.993 40.000 15.09 15.09 38.20 2.97
5227 11978 6.418585 GCTATAGCGTTTACAAAAGGTCTT 57.581 37.500 9.40 0.00 31.10 3.01
5228 11979 6.248631 GCTATAGCGTTTACAAAAGGTCTTG 58.751 40.000 9.40 0.00 31.10 3.02
5229 11980 3.349488 AGCGTTTACAAAAGGTCTTGC 57.651 42.857 0.00 0.00 0.00 4.01
5230 11981 2.041244 GCGTTTACAAAAGGTCTTGCG 58.959 47.619 0.00 0.00 0.00 4.85
5231 11982 2.041244 CGTTTACAAAAGGTCTTGCGC 58.959 47.619 0.00 0.00 0.00 6.09
5232 11983 2.286772 CGTTTACAAAAGGTCTTGCGCT 60.287 45.455 9.73 0.00 0.00 5.92
5233 11984 3.059461 CGTTTACAAAAGGTCTTGCGCTA 60.059 43.478 9.73 0.00 0.00 4.26
5234 11985 4.553156 CGTTTACAAAAGGTCTTGCGCTAA 60.553 41.667 9.73 0.00 0.00 3.09
5235 11986 4.742438 TTACAAAAGGTCTTGCGCTAAG 57.258 40.909 9.73 11.02 37.76 2.18
5236 11987 2.846193 ACAAAAGGTCTTGCGCTAAGA 58.154 42.857 9.73 13.31 43.01 2.10
5237 11988 2.808543 ACAAAAGGTCTTGCGCTAAGAG 59.191 45.455 18.44 10.73 45.71 2.85
5238 11989 3.067106 CAAAAGGTCTTGCGCTAAGAGA 58.933 45.455 18.44 9.99 45.71 3.10
5239 11990 3.618690 AAAGGTCTTGCGCTAAGAGAT 57.381 42.857 18.44 10.11 45.71 2.75
5240 11991 3.618690 AAGGTCTTGCGCTAAGAGATT 57.381 42.857 18.44 14.08 45.71 2.40
5241 11992 3.618690 AGGTCTTGCGCTAAGAGATTT 57.381 42.857 18.44 6.11 45.71 2.17
5242 11993 3.944087 AGGTCTTGCGCTAAGAGATTTT 58.056 40.909 18.44 4.80 45.71 1.82
5243 11994 3.686726 AGGTCTTGCGCTAAGAGATTTTG 59.313 43.478 18.44 0.00 45.71 2.44
5244 11995 3.181506 GGTCTTGCGCTAAGAGATTTTGG 60.182 47.826 18.44 0.00 45.71 3.28
5245 11996 3.437049 GTCTTGCGCTAAGAGATTTTGGT 59.563 43.478 18.44 0.00 45.71 3.67
5246 11997 3.684788 TCTTGCGCTAAGAGATTTTGGTC 59.315 43.478 9.73 0.00 40.43 4.02
5247 11998 2.356135 TGCGCTAAGAGATTTTGGTCC 58.644 47.619 9.73 0.00 0.00 4.46
5248 11999 2.290008 TGCGCTAAGAGATTTTGGTCCA 60.290 45.455 9.73 0.00 0.00 4.02
5249 12000 2.747446 GCGCTAAGAGATTTTGGTCCAA 59.253 45.455 0.00 0.00 0.00 3.53
5250 12001 3.190535 GCGCTAAGAGATTTTGGTCCAAA 59.809 43.478 13.26 13.26 0.00 3.28
5251 12002 4.723248 CGCTAAGAGATTTTGGTCCAAAC 58.277 43.478 16.88 6.69 32.79 2.93
5252 12003 4.215399 CGCTAAGAGATTTTGGTCCAAACA 59.785 41.667 16.88 8.80 32.79 2.83
5253 12004 5.278266 CGCTAAGAGATTTTGGTCCAAACAA 60.278 40.000 16.88 3.80 32.79 2.83
5254 12005 6.512297 GCTAAGAGATTTTGGTCCAAACAAA 58.488 36.000 16.88 3.03 32.79 2.83
5255 12006 7.154656 GCTAAGAGATTTTGGTCCAAACAAAT 58.845 34.615 16.88 8.07 37.62 2.32
5256 12007 7.116805 GCTAAGAGATTTTGGTCCAAACAAATG 59.883 37.037 16.88 4.42 37.62 2.32
5257 12008 6.729690 AGAGATTTTGGTCCAAACAAATGA 57.270 33.333 16.88 1.50 37.62 2.57
5258 12009 7.123355 AGAGATTTTGGTCCAAACAAATGAA 57.877 32.000 16.88 0.74 37.62 2.57
5259 12010 6.986231 AGAGATTTTGGTCCAAACAAATGAAC 59.014 34.615 16.88 0.45 37.62 3.18
5260 12011 6.648192 AGATTTTGGTCCAAACAAATGAACA 58.352 32.000 16.88 0.00 37.62 3.18
5261 12012 7.108847 AGATTTTGGTCCAAACAAATGAACAA 58.891 30.769 16.88 0.00 37.62 2.83
5262 12013 7.609532 AGATTTTGGTCCAAACAAATGAACAAA 59.390 29.630 16.88 0.00 42.26 2.83
5263 12014 6.487689 TTTGGTCCAAACAAATGAACAAAC 57.512 33.333 13.26 0.00 39.91 2.93
5264 12015 5.152623 TGGTCCAAACAAATGAACAAACA 57.847 34.783 0.00 0.00 0.00 2.83
5265 12016 5.738909 TGGTCCAAACAAATGAACAAACAT 58.261 33.333 0.00 0.00 0.00 2.71
5266 12017 6.176183 TGGTCCAAACAAATGAACAAACATT 58.824 32.000 0.00 0.00 41.43 2.71
5267 12018 6.656693 TGGTCCAAACAAATGAACAAACATTT 59.343 30.769 0.00 0.00 46.85 2.32
5268 12019 7.175641 TGGTCCAAACAAATGAACAAACATTTT 59.824 29.630 0.00 0.00 44.63 1.82
5269 12020 8.669243 GGTCCAAACAAATGAACAAACATTTTA 58.331 29.630 0.00 0.00 44.63 1.52
5277 12028 9.039500 CAAATGAACAAACATTTTAAATAGCGC 57.961 29.630 0.00 0.00 44.63 5.92
5278 12029 6.369326 TGAACAAACATTTTAAATAGCGCG 57.631 33.333 0.00 0.00 0.00 6.86
5279 12030 4.816277 ACAAACATTTTAAATAGCGCGC 57.184 36.364 26.66 26.66 0.00 6.86
5280 12031 4.481463 ACAAACATTTTAAATAGCGCGCT 58.519 34.783 38.01 38.01 0.00 5.92
5281 12032 5.632959 ACAAACATTTTAAATAGCGCGCTA 58.367 33.333 39.72 39.72 0.00 4.26
5282 12033 6.262601 ACAAACATTTTAAATAGCGCGCTAT 58.737 32.000 40.32 40.32 40.63 2.97
5283 12034 7.411274 ACAAACATTTTAAATAGCGCGCTATA 58.589 30.769 43.81 31.73 38.20 1.31
5284 12035 7.586300 ACAAACATTTTAAATAGCGCGCTATAG 59.414 33.333 43.81 29.40 38.20 1.31
5285 12036 5.618561 ACATTTTAAATAGCGCGCTATAGC 58.381 37.500 43.81 15.09 38.20 2.97
5286 12037 5.408604 ACATTTTAAATAGCGCGCTATAGCT 59.591 36.000 43.81 33.17 46.53 3.32
5287 12038 5.511088 TTTTAAATAGCGCGCTATAGCTC 57.489 39.130 43.81 13.77 43.44 4.09
5288 12039 1.997669 AAATAGCGCGCTATAGCTCC 58.002 50.000 43.81 10.26 43.44 4.70
5289 12040 0.179161 AATAGCGCGCTATAGCTCCG 60.179 55.000 43.81 22.32 43.44 4.63
5292 12043 2.868196 CGCGCTATAGCTCCGCTA 59.132 61.111 21.98 0.00 45.55 4.26
5300 12051 1.579932 TAGCTCCGCTATAGCACGC 59.420 57.895 23.99 20.26 42.62 5.34
5301 12052 0.889638 TAGCTCCGCTATAGCACGCT 60.890 55.000 25.78 25.78 42.62 5.07
5302 12053 0.889638 AGCTCCGCTATAGCACGCTA 60.890 55.000 23.99 0.39 42.62 4.26
5303 12054 0.171455 GCTCCGCTATAGCACGCTAT 59.829 55.000 23.99 15.45 42.21 2.97
5304 12055 1.400846 GCTCCGCTATAGCACGCTATA 59.599 52.381 23.99 15.99 42.21 1.31
5313 12064 6.951256 CTATAGCACGCTATAGCATTTGAA 57.049 37.500 25.42 9.81 46.26 2.69
5314 12065 7.351414 CTATAGCACGCTATAGCATTTGAAA 57.649 36.000 25.42 9.51 46.26 2.69
5315 12066 4.542662 AGCACGCTATAGCATTTGAAAG 57.457 40.909 23.99 7.87 42.21 2.62
5316 12067 4.191544 AGCACGCTATAGCATTTGAAAGA 58.808 39.130 23.99 0.00 42.21 2.52
5317 12068 4.272018 AGCACGCTATAGCATTTGAAAGAG 59.728 41.667 23.99 6.48 42.21 2.85
5318 12069 4.553547 GCACGCTATAGCATTTGAAAGAGG 60.554 45.833 23.99 5.98 42.21 3.69
5319 12070 4.572389 CACGCTATAGCATTTGAAAGAGGT 59.428 41.667 23.99 6.60 42.21 3.85
5320 12071 4.811557 ACGCTATAGCATTTGAAAGAGGTC 59.188 41.667 23.99 0.00 42.21 3.85
5321 12072 4.212214 CGCTATAGCATTTGAAAGAGGTCC 59.788 45.833 23.99 0.00 42.21 4.46
5322 12073 4.212214 GCTATAGCATTTGAAAGAGGTCCG 59.788 45.833 20.01 0.00 41.59 4.79
5323 12074 1.826385 AGCATTTGAAAGAGGTCCGG 58.174 50.000 0.00 0.00 0.00 5.14
5324 12075 0.171231 GCATTTGAAAGAGGTCCGGC 59.829 55.000 0.00 0.00 0.00 6.13
5325 12076 0.447801 CATTTGAAAGAGGTCCGGCG 59.552 55.000 0.00 0.00 0.00 6.46
5326 12077 1.305930 ATTTGAAAGAGGTCCGGCGC 61.306 55.000 0.00 0.00 0.00 6.53
5327 12078 2.391724 TTTGAAAGAGGTCCGGCGCT 62.392 55.000 7.64 0.00 0.00 5.92
5328 12079 1.537814 TTGAAAGAGGTCCGGCGCTA 61.538 55.000 7.64 0.00 0.00 4.26
5329 12080 1.217244 GAAAGAGGTCCGGCGCTAA 59.783 57.895 7.64 0.00 0.00 3.09
5330 12081 0.806492 GAAAGAGGTCCGGCGCTAAG 60.806 60.000 7.64 0.00 0.00 2.18
5331 12082 1.255667 AAAGAGGTCCGGCGCTAAGA 61.256 55.000 7.64 0.00 0.00 2.10
5332 12083 1.043673 AAGAGGTCCGGCGCTAAGAT 61.044 55.000 7.64 0.00 0.00 2.40
5333 12084 1.300233 GAGGTCCGGCGCTAAGATG 60.300 63.158 7.64 0.00 0.00 2.90
5334 12085 2.967615 GGTCCGGCGCTAAGATGC 60.968 66.667 7.64 0.00 0.00 3.91
5335 12086 2.107141 GTCCGGCGCTAAGATGCT 59.893 61.111 7.64 0.00 0.00 3.79
5336 12087 1.521681 GTCCGGCGCTAAGATGCTT 60.522 57.895 7.64 0.00 0.00 3.91
5337 12088 0.249322 GTCCGGCGCTAAGATGCTTA 60.249 55.000 7.64 0.00 0.00 3.09
5338 12089 0.032130 TCCGGCGCTAAGATGCTTAG 59.968 55.000 7.64 9.30 0.00 2.18
5339 12090 1.560860 CCGGCGCTAAGATGCTTAGC 61.561 60.000 22.75 22.75 42.82 3.09
5343 12094 1.202816 GCTAAGATGCTTAGCGCGC 59.797 57.895 26.66 26.66 43.27 6.86
5344 12095 1.218230 GCTAAGATGCTTAGCGCGCT 61.218 55.000 38.01 38.01 43.27 5.92
5345 12096 1.930817 GCTAAGATGCTTAGCGCGCTA 60.931 52.381 35.48 35.48 43.27 4.26
5346 12097 2.600731 CTAAGATGCTTAGCGCGCTAT 58.399 47.619 38.51 26.50 43.27 2.97
5347 12098 1.871080 AAGATGCTTAGCGCGCTATT 58.129 45.000 38.51 26.01 43.27 1.73
5348 12099 1.871080 AGATGCTTAGCGCGCTATTT 58.129 45.000 38.51 23.54 43.27 1.40
5349 12100 3.026630 AGATGCTTAGCGCGCTATTTA 57.973 42.857 38.51 26.65 43.27 1.40
5350 12101 3.390135 AGATGCTTAGCGCGCTATTTAA 58.610 40.909 38.51 25.53 43.27 1.52
5351 12102 3.807622 AGATGCTTAGCGCGCTATTTAAA 59.192 39.130 38.51 25.16 43.27 1.52
5352 12103 4.272504 AGATGCTTAGCGCGCTATTTAAAA 59.727 37.500 38.51 24.43 43.27 1.52
5353 12104 3.676540 TGCTTAGCGCGCTATTTAAAAC 58.323 40.909 38.51 22.00 43.27 2.43
5354 12105 3.372822 TGCTTAGCGCGCTATTTAAAACT 59.627 39.130 38.51 14.50 43.27 2.66
5355 12106 4.142773 TGCTTAGCGCGCTATTTAAAACTT 60.143 37.500 38.51 13.94 43.27 2.66
5356 12107 4.791676 GCTTAGCGCGCTATTTAAAACTTT 59.208 37.500 38.51 13.72 0.00 2.66
5357 12108 5.275280 GCTTAGCGCGCTATTTAAAACTTTG 60.275 40.000 38.51 15.49 0.00 2.77
5358 12109 4.413495 AGCGCGCTATTTAAAACTTTGA 57.587 36.364 35.79 0.00 0.00 2.69
5359 12110 4.789784 AGCGCGCTATTTAAAACTTTGAA 58.210 34.783 35.79 0.00 0.00 2.69
5360 12111 5.216648 AGCGCGCTATTTAAAACTTTGAAA 58.783 33.333 35.79 0.00 0.00 2.69
5361 12112 5.861787 AGCGCGCTATTTAAAACTTTGAAAT 59.138 32.000 35.79 0.00 0.00 2.17
5362 12113 6.364976 AGCGCGCTATTTAAAACTTTGAAATT 59.635 30.769 35.79 0.00 0.00 1.82
5363 12114 7.007117 GCGCGCTATTTAAAACTTTGAAATTT 58.993 30.769 26.67 0.00 0.00 1.82
5364 12115 7.529185 GCGCGCTATTTAAAACTTTGAAATTTT 59.471 29.630 26.67 0.00 32.85 1.82
5365 12116 8.817296 CGCGCTATTTAAAACTTTGAAATTTTG 58.183 29.630 5.56 0.00 30.80 2.44
5366 12117 8.618109 GCGCTATTTAAAACTTTGAAATTTTGC 58.382 29.630 0.00 5.06 30.80 3.68
5367 12118 9.643652 CGCTATTTAAAACTTTGAAATTTTGCA 57.356 25.926 2.67 0.00 30.80 4.08
5391 12142 3.834231 CCCAACTTGAAATCCCAGTCATT 59.166 43.478 0.00 0.00 0.00 2.57
5417 12168 3.753815 TCAATCAATGCAGTCTTGTCCA 58.246 40.909 0.00 0.00 0.00 4.02
5419 12170 1.527034 TCAATGCAGTCTTGTCCAGC 58.473 50.000 0.00 0.00 0.00 4.85
5487 12238 6.673154 ACCCGCACTAATAATTGAAACTAC 57.327 37.500 0.00 0.00 0.00 2.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
154 155 0.392461 TGGCTTGGCGATAAGACACC 60.392 55.000 3.78 0.00 40.66 4.16
211 212 3.329520 TCAAAAGCTTGCTAGGAGGGTTA 59.670 43.478 11.07 0.00 32.14 2.85
475 479 4.354212 CACCGTCACAAGCACGCG 62.354 66.667 3.53 3.53 35.87 6.01
684 690 4.929808 AGCATCGTCGAGTTCAAAGTTTAT 59.070 37.500 0.00 0.00 0.00 1.40
702 708 5.857822 AAGGTAAAAGTTACGTGAGCATC 57.142 39.130 0.00 0.00 0.00 3.91
730 739 9.855021 CCGGTGTTTAAGAAATTTATCTCATTT 57.145 29.630 0.00 0.00 0.00 2.32
738 747 8.130469 GTGTTTCTCCGGTGTTTAAGAAATTTA 58.870 33.333 14.64 4.95 39.26 1.40
959 990 0.663153 GTTTCGCTGCTTGAGTTGGT 59.337 50.000 0.00 0.00 0.00 3.67
996 1027 1.973138 CACTAAAGCTGTGCATGCAC 58.027 50.000 38.00 38.00 46.33 4.57
1007 1038 1.198408 GGGGTTTACGTGCACTAAAGC 59.802 52.381 25.92 25.92 32.95 3.51
1072 1429 4.101448 GTGAGCTCCGGCCATGGT 62.101 66.667 14.67 0.00 39.73 3.55
1384 1768 4.776322 CAGGTCAATGCCGCGGGA 62.776 66.667 29.38 27.51 0.00 5.14
1561 1945 5.389516 GCGATATGCTTATACCTTGTTTCCG 60.390 44.000 0.00 0.00 41.73 4.30
1594 1984 3.669036 CTCCGTCGTCGTGGCTCTG 62.669 68.421 0.71 0.00 35.01 3.35
1983 2409 4.752879 GTGTTCCCCGCTAGCGCA 62.753 66.667 31.35 19.95 38.24 6.09
2325 2751 0.539669 TGAGCACCAAGAGGACGAGA 60.540 55.000 0.00 0.00 38.69 4.04
2363 2789 3.077484 AGGCAGCTGATTTGCTAAAGA 57.923 42.857 20.43 0.00 41.98 2.52
2366 2792 1.203052 GCAAGGCAGCTGATTTGCTAA 59.797 47.619 31.64 0.00 41.98 3.09
2367 2793 0.813184 GCAAGGCAGCTGATTTGCTA 59.187 50.000 31.64 0.00 41.98 3.49
2369 2795 1.447314 GGCAAGGCAGCTGATTTGC 60.447 57.895 31.38 31.38 43.81 3.68
2376 2802 2.541547 TAAGCATCGGCAAGGCAGCT 62.542 55.000 0.00 0.00 44.61 4.24
2378 2804 1.723870 GTAAGCATCGGCAAGGCAG 59.276 57.895 0.00 0.00 44.61 4.85
2379 2805 2.106074 CGTAAGCATCGGCAAGGCA 61.106 57.895 0.00 0.00 44.61 4.75
2380 2806 1.766143 CTCGTAAGCATCGGCAAGGC 61.766 60.000 0.00 0.00 44.61 4.35
2382 2808 1.203928 CTCTCGTAAGCATCGGCAAG 58.796 55.000 0.00 0.00 44.61 4.01
2383 2809 0.530744 ACTCTCGTAAGCATCGGCAA 59.469 50.000 0.00 0.00 44.61 4.52
2385 2811 1.483424 GCACTCTCGTAAGCATCGGC 61.483 60.000 0.00 0.00 41.61 5.54
2386 2812 0.179137 TGCACTCTCGTAAGCATCGG 60.179 55.000 0.00 0.00 31.05 4.18
2401 2863 2.562912 CACGTGGGAGCATTGCAC 59.437 61.111 11.91 4.24 0.00 4.57
2405 2867 0.676782 GTTAGCCACGTGGGAGCATT 60.677 55.000 34.58 9.22 40.01 3.56
2410 2872 4.506758 GTTAATTAGTTAGCCACGTGGGA 58.493 43.478 34.58 0.00 40.01 4.37
2413 2875 6.238022 GCTTAGGTTAATTAGTTAGCCACGTG 60.238 42.308 9.08 9.08 41.98 4.49
2415 2877 6.047231 AGCTTAGGTTAATTAGTTAGCCACG 58.953 40.000 12.38 2.87 41.98 4.94
2416 2878 8.953368 TTAGCTTAGGTTAATTAGTTAGCCAC 57.047 34.615 12.38 1.03 41.98 5.01
2417 2879 8.765517 ACTTAGCTTAGGTTAATTAGTTAGCCA 58.234 33.333 12.38 0.00 41.98 4.75
2418 2880 9.610705 AACTTAGCTTAGGTTAATTAGTTAGCC 57.389 33.333 4.52 3.05 40.41 3.93
2424 2886 9.654663 ACTGTGAACTTAGCTTAGGTTAATTAG 57.345 33.333 4.52 0.00 0.00 1.73
2426 2888 8.919777 AACTGTGAACTTAGCTTAGGTTAATT 57.080 30.769 4.52 0.00 0.00 1.40
2427 2889 8.784043 CAAACTGTGAACTTAGCTTAGGTTAAT 58.216 33.333 4.52 0.00 0.00 1.40
2429 2891 7.277396 ACAAACTGTGAACTTAGCTTAGGTTA 58.723 34.615 4.52 0.00 0.00 2.85
2430 2892 6.120220 ACAAACTGTGAACTTAGCTTAGGTT 58.880 36.000 4.52 1.74 0.00 3.50
2433 2895 7.132863 GGAAACAAACTGTGAACTTAGCTTAG 58.867 38.462 0.00 0.00 0.00 2.18
2477 3021 8.090831 AGAAACTGAGAAAAATAAAATCCCAGC 58.909 33.333 0.00 0.00 0.00 4.85
2478 3022 9.415544 CAGAAACTGAGAAAAATAAAATCCCAG 57.584 33.333 0.00 0.00 32.44 4.45
2479 3023 7.872483 GCAGAAACTGAGAAAAATAAAATCCCA 59.128 33.333 2.81 0.00 32.44 4.37
2480 3024 7.062255 CGCAGAAACTGAGAAAAATAAAATCCC 59.938 37.037 2.81 0.00 33.20 3.85
2531 3079 7.174946 ACAAGATCGGAAAGCTAATTTCTTTGA 59.825 33.333 9.29 3.90 45.62 2.69
2539 3087 6.017605 CAGCATAACAAGATCGGAAAGCTAAT 60.018 38.462 0.00 0.00 0.00 1.73
2580 4193 1.553248 TGGAACGGAGGGAGTATGTTG 59.447 52.381 0.00 0.00 0.00 3.33
2581 4194 1.946984 TGGAACGGAGGGAGTATGTT 58.053 50.000 0.00 0.00 0.00 2.71
2582 4195 1.946984 TTGGAACGGAGGGAGTATGT 58.053 50.000 0.00 0.00 0.00 2.29
2583 4196 3.343941 TTTTGGAACGGAGGGAGTATG 57.656 47.619 0.00 0.00 0.00 2.39
2584 4197 5.703730 TTATTTTGGAACGGAGGGAGTAT 57.296 39.130 0.00 0.00 0.00 2.12
2585 4198 5.502089 TTTATTTTGGAACGGAGGGAGTA 57.498 39.130 0.00 0.00 0.00 2.59
2586 4199 4.376225 TTTATTTTGGAACGGAGGGAGT 57.624 40.909 0.00 0.00 0.00 3.85
2587 4200 4.705023 ACATTTATTTTGGAACGGAGGGAG 59.295 41.667 0.00 0.00 0.00 4.30
2588 4201 4.668636 ACATTTATTTTGGAACGGAGGGA 58.331 39.130 0.00 0.00 0.00 4.20
2589 4202 4.705023 AGACATTTATTTTGGAACGGAGGG 59.295 41.667 0.00 0.00 0.00 4.30
2590 4203 5.897377 AGACATTTATTTTGGAACGGAGG 57.103 39.130 0.00 0.00 0.00 4.30
2591 4204 6.801862 GTCAAGACATTTATTTTGGAACGGAG 59.198 38.462 0.00 0.00 0.00 4.63
2592 4205 6.294286 GGTCAAGACATTTATTTTGGAACGGA 60.294 38.462 2.29 0.00 0.00 4.69
2593 4206 5.861787 GGTCAAGACATTTATTTTGGAACGG 59.138 40.000 2.29 0.00 0.00 4.44
2594 4207 6.677913 AGGTCAAGACATTTATTTTGGAACG 58.322 36.000 2.29 0.00 0.00 3.95
2595 4208 9.626045 CTAAGGTCAAGACATTTATTTTGGAAC 57.374 33.333 5.39 0.00 36.63 3.62
2596 4209 9.362151 ACTAAGGTCAAGACATTTATTTTGGAA 57.638 29.630 5.39 0.00 36.63 3.53
2597 4210 8.934023 ACTAAGGTCAAGACATTTATTTTGGA 57.066 30.769 5.39 0.00 36.63 3.53
2631 4244 8.895737 GTCTCAACTTTGTACTAGCTCTAGTAT 58.104 37.037 16.96 1.87 46.57 2.12
2632 4245 7.881751 TGTCTCAACTTTGTACTAGCTCTAGTA 59.118 37.037 11.59 11.59 43.98 1.82
2634 4247 7.024768 GTGTCTCAACTTTGTACTAGCTCTAG 58.975 42.308 0.00 2.55 39.04 2.43
2635 4248 6.715718 AGTGTCTCAACTTTGTACTAGCTCTA 59.284 38.462 0.00 0.00 0.00 2.43
2636 4249 5.536916 AGTGTCTCAACTTTGTACTAGCTCT 59.463 40.000 0.00 0.00 0.00 4.09
2637 4250 5.774630 AGTGTCTCAACTTTGTACTAGCTC 58.225 41.667 0.00 0.00 0.00 4.09
2638 4251 5.793030 AGTGTCTCAACTTTGTACTAGCT 57.207 39.130 0.00 0.00 0.00 3.32
2639 4252 8.535690 AATAAGTGTCTCAACTTTGTACTAGC 57.464 34.615 0.00 0.00 40.77 3.42
2646 4259 9.370126 CGTCTTAAAATAAGTGTCTCAACTTTG 57.630 33.333 0.00 0.00 40.77 2.77
2647 4260 8.557029 CCGTCTTAAAATAAGTGTCTCAACTTT 58.443 33.333 0.00 0.00 40.77 2.66
2648 4261 7.713942 ACCGTCTTAAAATAAGTGTCTCAACTT 59.286 33.333 0.00 0.00 42.89 2.66
2649 4262 7.170998 CACCGTCTTAAAATAAGTGTCTCAACT 59.829 37.037 0.00 0.00 0.00 3.16
2650 4263 7.288672 CACCGTCTTAAAATAAGTGTCTCAAC 58.711 38.462 0.00 0.00 0.00 3.18
2651 4264 6.425721 CCACCGTCTTAAAATAAGTGTCTCAA 59.574 38.462 0.00 0.00 0.00 3.02
2652 4265 5.929992 CCACCGTCTTAAAATAAGTGTCTCA 59.070 40.000 0.00 0.00 0.00 3.27
2653 4266 5.350640 CCCACCGTCTTAAAATAAGTGTCTC 59.649 44.000 0.00 0.00 0.00 3.36
2654 4267 5.012354 TCCCACCGTCTTAAAATAAGTGTCT 59.988 40.000 0.00 0.00 0.00 3.41
2655 4268 5.240121 TCCCACCGTCTTAAAATAAGTGTC 58.760 41.667 0.00 0.00 0.00 3.67
2656 4269 5.221783 ACTCCCACCGTCTTAAAATAAGTGT 60.222 40.000 0.00 0.00 0.00 3.55
2657 4270 5.243207 ACTCCCACCGTCTTAAAATAAGTG 58.757 41.667 0.00 0.00 0.00 3.16
2658 4271 5.494390 ACTCCCACCGTCTTAAAATAAGT 57.506 39.130 0.00 0.00 0.00 2.24
2659 4272 6.400568 TGTACTCCCACCGTCTTAAAATAAG 58.599 40.000 0.00 0.00 0.00 1.73
2660 4273 6.357579 TGTACTCCCACCGTCTTAAAATAA 57.642 37.500 0.00 0.00 0.00 1.40
2661 4274 5.999205 TGTACTCCCACCGTCTTAAAATA 57.001 39.130 0.00 0.00 0.00 1.40
2662 4275 4.895668 TGTACTCCCACCGTCTTAAAAT 57.104 40.909 0.00 0.00 0.00 1.82
2663 4276 4.686191 TTGTACTCCCACCGTCTTAAAA 57.314 40.909 0.00 0.00 0.00 1.52
2664 4277 4.895668 ATTGTACTCCCACCGTCTTAAA 57.104 40.909 0.00 0.00 0.00 1.52
2665 4278 7.658525 TTATATTGTACTCCCACCGTCTTAA 57.341 36.000 0.00 0.00 0.00 1.85
2666 4279 7.658525 TTTATATTGTACTCCCACCGTCTTA 57.341 36.000 0.00 0.00 0.00 2.10
2669 4282 6.987992 TCAATTTATATTGTACTCCCACCGTC 59.012 38.462 5.90 0.00 41.54 4.79
2674 4287 6.704493 GCTCGTCAATTTATATTGTACTCCCA 59.296 38.462 5.90 0.00 41.54 4.37
2679 4292 7.709269 TCCAGCTCGTCAATTTATATTGTAC 57.291 36.000 5.90 0.00 41.54 2.90
2701 4314 2.352127 GGAGCACATGAACAAAGCTTCC 60.352 50.000 0.00 0.00 35.36 3.46
2710 4323 0.961019 TTTGGCTGGAGCACATGAAC 59.039 50.000 0.00 0.00 44.36 3.18
2738 4352 1.195347 CGCTATGAGCAGAAGACACG 58.805 55.000 0.00 0.00 42.58 4.49
2740 4354 1.818674 TGTCGCTATGAGCAGAAGACA 59.181 47.619 0.00 1.58 42.58 3.41
2741 4355 2.568696 TGTCGCTATGAGCAGAAGAC 57.431 50.000 0.00 0.00 42.58 3.01
2765 4379 3.144506 CACTTGTCAACAGAAGCCAGAT 58.855 45.455 0.00 0.00 0.00 2.90
2831 4445 4.995058 GTCCCACTCCCACCCCCA 62.995 72.222 0.00 0.00 0.00 4.96
2834 4448 3.703127 GTCGTCCCACTCCCACCC 61.703 72.222 0.00 0.00 0.00 4.61
2835 4449 4.065281 CGTCGTCCCACTCCCACC 62.065 72.222 0.00 0.00 0.00 4.61
2836 4450 2.864471 AACGTCGTCCCACTCCCAC 61.864 63.158 0.00 0.00 0.00 4.61
2837 4451 2.522436 AACGTCGTCCCACTCCCA 60.522 61.111 0.00 0.00 0.00 4.37
2838 4452 2.048503 CAACGTCGTCCCACTCCC 60.049 66.667 0.00 0.00 0.00 4.30
2839 4453 0.037605 ATTCAACGTCGTCCCACTCC 60.038 55.000 0.00 0.00 0.00 3.85
2840 4454 1.336517 TGATTCAACGTCGTCCCACTC 60.337 52.381 0.00 0.00 0.00 3.51
2841 4455 0.677288 TGATTCAACGTCGTCCCACT 59.323 50.000 0.00 0.00 0.00 4.00
2842 4456 1.722011 ATGATTCAACGTCGTCCCAC 58.278 50.000 0.00 0.00 0.00 4.61
2843 4457 2.073056 CAATGATTCAACGTCGTCCCA 58.927 47.619 0.00 0.00 0.00 4.37
2844 4458 2.343101 TCAATGATTCAACGTCGTCCC 58.657 47.619 0.00 0.00 0.00 4.46
2845 4459 2.222819 GCTCAATGATTCAACGTCGTCC 60.223 50.000 0.00 0.00 0.00 4.79
2846 4460 2.411748 TGCTCAATGATTCAACGTCGTC 59.588 45.455 0.00 0.00 0.00 4.20
2869 4483 4.160594 CGTTGTACGCACAAGATGTACTA 58.839 43.478 0.26 0.00 45.18 1.82
2876 4490 0.598158 GGTCCGTTGTACGCACAAGA 60.598 55.000 0.26 0.00 45.18 3.02
2893 4507 2.521958 AATAGCTCGTTGGCGCTGGT 62.522 55.000 7.64 0.00 37.05 4.00
2914 4528 1.068954 GGCGCTTGTCTTTTCTTGAGG 60.069 52.381 7.64 0.00 0.00 3.86
2920 4534 4.515107 CGTGGCGCTTGTCTTTTC 57.485 55.556 7.64 0.00 0.00 2.29
3009 4625 0.741221 CTCTGCCAACCTAAGACGCC 60.741 60.000 0.00 0.00 0.00 5.68
3010 4626 0.741221 CCTCTGCCAACCTAAGACGC 60.741 60.000 0.00 0.00 0.00 5.19
3011 4627 0.741221 GCCTCTGCCAACCTAAGACG 60.741 60.000 0.00 0.00 0.00 4.18
3012 4628 0.324943 TGCCTCTGCCAACCTAAGAC 59.675 55.000 0.00 0.00 36.33 3.01
3067 6644 1.154016 ACGCGAGTGAAGATGTCGG 60.154 57.895 15.93 0.00 46.97 4.79
3105 6682 2.203126 CTCCTGGCCCATCTTCGC 60.203 66.667 0.00 0.00 0.00 4.70
3106 6683 2.203126 GCTCCTGGCCCATCTTCG 60.203 66.667 0.00 0.00 34.27 3.79
3107 6684 1.153005 CAGCTCCTGGCCCATCTTC 60.153 63.158 0.00 0.00 43.05 2.87
3123 6700 1.069022 CACAAAACGATGCTCCACCAG 60.069 52.381 0.00 0.00 0.00 4.00
3124 6701 0.950836 CACAAAACGATGCTCCACCA 59.049 50.000 0.00 0.00 0.00 4.17
3125 6702 0.387239 GCACAAAACGATGCTCCACC 60.387 55.000 0.00 0.00 38.84 4.61
3126 6703 0.310543 TGCACAAAACGATGCTCCAC 59.689 50.000 0.00 0.00 42.55 4.02
3127 6704 1.068402 CATGCACAAAACGATGCTCCA 60.068 47.619 0.00 0.00 42.55 3.86
3128 6705 1.621107 CATGCACAAAACGATGCTCC 58.379 50.000 0.00 0.00 42.55 4.70
3130 6707 0.388907 GCCATGCACAAAACGATGCT 60.389 50.000 0.00 0.00 42.55 3.79
3132 6709 1.336148 ACAGCCATGCACAAAACGATG 60.336 47.619 0.00 0.00 0.00 3.84
3134 6711 0.743688 AACAGCCATGCACAAAACGA 59.256 45.000 0.00 0.00 0.00 3.85
3136 6713 3.369546 ACTAACAGCCATGCACAAAAC 57.630 42.857 0.00 0.00 0.00 2.43
3137 6714 5.300539 TCTTAACTAACAGCCATGCACAAAA 59.699 36.000 0.00 0.00 0.00 2.44
3138 6715 4.824537 TCTTAACTAACAGCCATGCACAAA 59.175 37.500 0.00 0.00 0.00 2.83
3139 6716 4.215399 GTCTTAACTAACAGCCATGCACAA 59.785 41.667 0.00 0.00 0.00 3.33
3140 6717 3.751175 GTCTTAACTAACAGCCATGCACA 59.249 43.478 0.00 0.00 0.00 4.57
3141 6718 4.003648 AGTCTTAACTAACAGCCATGCAC 58.996 43.478 0.00 0.00 32.59 4.57
3142 6719 4.286297 AGTCTTAACTAACAGCCATGCA 57.714 40.909 0.00 0.00 32.59 3.96
3143 6720 5.294552 CCTAAGTCTTAACTAACAGCCATGC 59.705 44.000 0.00 0.00 33.48 4.06
3144 6721 5.817816 CCCTAAGTCTTAACTAACAGCCATG 59.182 44.000 0.00 0.00 33.48 3.66
3145 6722 5.104485 CCCCTAAGTCTTAACTAACAGCCAT 60.104 44.000 0.00 0.00 33.48 4.40
3146 6723 4.224370 CCCCTAAGTCTTAACTAACAGCCA 59.776 45.833 0.00 0.00 33.48 4.75
3147 6724 4.468868 TCCCCTAAGTCTTAACTAACAGCC 59.531 45.833 0.00 0.00 33.48 4.85
3148 6725 5.662456 CTCCCCTAAGTCTTAACTAACAGC 58.338 45.833 0.00 0.00 33.48 4.40
3149 6726 5.422650 AGCTCCCCTAAGTCTTAACTAACAG 59.577 44.000 0.00 0.00 33.48 3.16
3150 6727 5.339477 AGCTCCCCTAAGTCTTAACTAACA 58.661 41.667 0.00 0.00 33.48 2.41
3151 6728 5.936187 AGCTCCCCTAAGTCTTAACTAAC 57.064 43.478 0.00 0.00 33.48 2.34
3152 6729 6.262207 AGAAGCTCCCCTAAGTCTTAACTAA 58.738 40.000 0.00 0.00 33.48 2.24
3153 6730 5.840081 AGAAGCTCCCCTAAGTCTTAACTA 58.160 41.667 0.00 0.00 33.48 2.24
3154 6731 4.690149 AGAAGCTCCCCTAAGTCTTAACT 58.310 43.478 0.00 0.00 37.32 2.24
3155 6732 4.141892 GGAGAAGCTCCCCTAAGTCTTAAC 60.142 50.000 1.97 0.00 44.36 2.01
3156 6733 4.031611 GGAGAAGCTCCCCTAAGTCTTAA 58.968 47.826 1.97 0.00 44.36 1.85
3157 6734 3.644335 GGAGAAGCTCCCCTAAGTCTTA 58.356 50.000 1.97 0.00 44.36 2.10
3158 6735 2.473070 GGAGAAGCTCCCCTAAGTCTT 58.527 52.381 1.97 0.00 44.36 3.01
3159 6736 2.168458 GGAGAAGCTCCCCTAAGTCT 57.832 55.000 1.97 0.00 44.36 3.24
3171 6748 4.448060 CGGTCTATTAATTTCCGGAGAAGC 59.552 45.833 3.34 0.00 37.92 3.86
3172 6749 5.598769 ACGGTCTATTAATTTCCGGAGAAG 58.401 41.667 20.97 0.00 44.54 2.85
3200 6777 3.432051 CTCGAATCCCGCGGCTCTT 62.432 63.158 22.85 12.46 38.37 2.85
3203 6780 2.831742 TACTCGAATCCCGCGGCT 60.832 61.111 22.85 6.04 38.37 5.52
3208 6785 0.041839 CCGTACGTACTCGAATCCCG 60.042 60.000 22.55 6.79 40.62 5.14
3211 6788 2.349886 ACTCACCGTACGTACTCGAATC 59.650 50.000 22.55 0.00 40.62 2.52
3215 6792 1.070821 TGACTCACCGTACGTACTCG 58.929 55.000 22.55 14.71 43.34 4.18
3222 6799 4.062991 ACTTTTGGAATGACTCACCGTAC 58.937 43.478 0.00 0.00 0.00 3.67
3224 6801 2.878406 CACTTTTGGAATGACTCACCGT 59.122 45.455 0.00 0.00 0.00 4.83
3225 6802 3.138304 TCACTTTTGGAATGACTCACCG 58.862 45.455 0.00 0.00 0.00 4.94
3226 6803 5.514274 TTTCACTTTTGGAATGACTCACC 57.486 39.130 0.00 0.00 0.00 4.02
3229 6806 4.024048 TCGCTTTCACTTTTGGAATGACTC 60.024 41.667 0.00 0.00 0.00 3.36
3240 6864 8.237267 CCTATTTACATCTTTCGCTTTCACTTT 58.763 33.333 0.00 0.00 0.00 2.66
3267 6891 2.584835 TCATGTAAGCCAAGGCAAGT 57.415 45.000 14.40 0.51 44.88 3.16
3297 6921 3.467119 CGTCGTGCGTGCCACTAC 61.467 66.667 0.00 0.00 42.42 2.73
3435 7067 3.708734 CGTTTGGTCGTGTCGCCC 61.709 66.667 0.00 0.00 0.00 6.13
3466 7098 0.041238 AAGGGATGTGGAGTCGAGGA 59.959 55.000 0.00 0.00 0.00 3.71
3467 7099 0.461961 GAAGGGATGTGGAGTCGAGG 59.538 60.000 0.00 0.00 0.00 4.63
3468 7100 0.461961 GGAAGGGATGTGGAGTCGAG 59.538 60.000 0.00 0.00 0.00 4.04
3469 7101 0.252057 TGGAAGGGATGTGGAGTCGA 60.252 55.000 0.00 0.00 0.00 4.20
3470 7102 0.833287 ATGGAAGGGATGTGGAGTCG 59.167 55.000 0.00 0.00 0.00 4.18
3471 7103 1.839994 TCATGGAAGGGATGTGGAGTC 59.160 52.381 0.00 0.00 0.00 3.36
3472 7104 1.971149 TCATGGAAGGGATGTGGAGT 58.029 50.000 0.00 0.00 0.00 3.85
3578 7228 1.391577 CATGTGAATGATTGGCCGGA 58.608 50.000 5.05 0.00 0.00 5.14
3628 7284 2.597510 GCTGGCCCGTGGAAAAGT 60.598 61.111 0.00 0.00 0.00 2.66
3632 7288 2.891941 GATGATGCTGGCCCGTGGAA 62.892 60.000 0.00 0.00 0.00 3.53
3695 7355 1.060713 CTGGAGAAGTTGCACGTACG 58.939 55.000 15.01 15.01 0.00 3.67
3761 7427 0.821301 TTGGCGATTGACAGGTTGCA 60.821 50.000 0.00 0.00 32.01 4.08
3794 7464 2.876091 CAAGAGAAGCGACGGACATAA 58.124 47.619 0.00 0.00 0.00 1.90
3854 7524 2.673775 TTTCCCATGACCTGCAAGAA 57.326 45.000 0.00 0.00 34.07 2.52
3862 7532 1.851304 TGCCTGAATTTCCCATGACC 58.149 50.000 0.00 0.00 0.00 4.02
3864 7534 2.562298 GTGTTGCCTGAATTTCCCATGA 59.438 45.455 0.00 0.00 0.00 3.07
3932 10207 3.262915 AGAAAGAGGATCAGTGACCCTTG 59.737 47.826 7.72 0.00 37.82 3.61
4039 10665 3.190738 TTGAGCAACCTGACCCCCG 62.191 63.158 0.00 0.00 0.00 5.73
4140 10766 0.853530 AAGCTGAAGTTGAGGGGGTT 59.146 50.000 0.00 0.00 0.00 4.11
4196 10822 4.518970 AGGCTTTCTTGATTTGCGTTAGAA 59.481 37.500 0.00 0.00 0.00 2.10
4208 10834 6.038825 TGTTATTCGTTTTCAGGCTTTCTTGA 59.961 34.615 0.00 0.00 0.00 3.02
4212 10838 7.637709 ATTTGTTATTCGTTTTCAGGCTTTC 57.362 32.000 0.00 0.00 0.00 2.62
4239 10867 0.796927 GCCGGAACTAAGTTGCAGTC 59.203 55.000 5.05 0.00 33.52 3.51
4289 11009 2.227865 TGCGGAATGTGAAGGCTAAAAC 59.772 45.455 0.00 0.00 0.00 2.43
4517 11237 3.903281 AATGCAATGGCCACCGGGT 62.903 57.895 8.16 0.00 40.13 5.28
4518 11238 3.076278 AATGCAATGGCCACCGGG 61.076 61.111 8.16 0.00 40.13 5.73
4544 11265 5.299148 CCATTCACAAAACAACATGACCAT 58.701 37.500 0.00 0.00 0.00 3.55
4568 11289 4.001652 GGTACGGAAAAGGGAAGAGAAAG 58.998 47.826 0.00 0.00 0.00 2.62
4569 11290 3.649502 AGGTACGGAAAAGGGAAGAGAAA 59.350 43.478 0.00 0.00 0.00 2.52
4571 11292 2.898662 AGGTACGGAAAAGGGAAGAGA 58.101 47.619 0.00 0.00 0.00 3.10
4572 11293 3.597255 GAAGGTACGGAAAAGGGAAGAG 58.403 50.000 0.00 0.00 0.00 2.85
4575 11296 2.056359 TGGAAGGTACGGAAAAGGGAA 58.944 47.619 0.00 0.00 0.00 3.97
4576 11297 1.732117 TGGAAGGTACGGAAAAGGGA 58.268 50.000 0.00 0.00 0.00 4.20
4578 11299 3.629142 AGATGGAAGGTACGGAAAAGG 57.371 47.619 0.00 0.00 0.00 3.11
4579 11300 4.760204 ACAAAGATGGAAGGTACGGAAAAG 59.240 41.667 0.00 0.00 0.00 2.27
4584 11310 3.053831 ACACAAAGATGGAAGGTACGG 57.946 47.619 0.00 0.00 0.00 4.02
4586 11312 5.790593 TGACTACACAAAGATGGAAGGTAC 58.209 41.667 0.00 0.00 0.00 3.34
4606 11332 2.683968 TCGTTCTGCACCTTACATGAC 58.316 47.619 0.00 0.00 0.00 3.06
4611 11337 2.490991 AGGTTTCGTTCTGCACCTTAC 58.509 47.619 0.00 0.00 36.09 2.34
4621 11347 0.591659 GCAGGTGGAAGGTTTCGTTC 59.408 55.000 0.00 0.00 0.00 3.95
4624 11350 1.228124 TGGCAGGTGGAAGGTTTCG 60.228 57.895 0.00 0.00 0.00 3.46
4643 11369 2.290260 TGCAGGTGAATCTGTACAAGGG 60.290 50.000 0.00 0.00 37.12 3.95
4714 11440 1.475280 CCACCAGGTCATGCTTGAATG 59.525 52.381 3.51 6.49 32.48 2.67
4716 11442 3.344703 CCACCAGGTCATGCTTGAA 57.655 52.632 3.51 0.00 32.48 2.69
4728 11459 2.550830 AGTGACTAGCAAACCACCAG 57.449 50.000 0.00 0.00 0.00 4.00
4749 11480 1.138859 GGCTGCCAAACTTTTTGGAGT 59.861 47.619 19.69 0.00 42.06 3.85
4750 11481 1.138661 TGGCTGCCAAACTTTTTGGAG 59.861 47.619 21.08 14.30 42.06 3.86
4760 11491 0.609957 CCAGATCTGTGGCTGCCAAA 60.610 55.000 25.23 18.40 34.18 3.28
4859 11591 1.729586 TACTTGTGGCCTCAGGAACT 58.270 50.000 22.21 4.08 43.88 3.01
4862 11594 5.450818 AATAATTACTTGTGGCCTCAGGA 57.549 39.130 22.21 4.68 0.00 3.86
4863 11595 7.255590 CCATTAATAATTACTTGTGGCCTCAGG 60.256 40.741 14.75 14.75 0.00 3.86
4890 11622 9.322776 GCACGAAGATAGCAATATAATTCTTTG 57.677 33.333 0.00 0.00 33.01 2.77
4940 11672 6.507900 CGTGCTATTCCTTTTATCTCTCAGA 58.492 40.000 0.00 0.00 0.00 3.27
4943 11675 4.149046 CGCGTGCTATTCCTTTTATCTCTC 59.851 45.833 0.00 0.00 0.00 3.20
5034 11767 6.515272 AGGAATGTTCAAGCGAATACAATT 57.485 33.333 0.00 0.00 32.61 2.32
5063 11796 1.205657 CATGTGTGTATACCGCGTCC 58.794 55.000 4.92 0.00 0.00 4.79
5127 11861 1.964223 TGGGCTGGTTTTTATTGCGAA 59.036 42.857 0.00 0.00 0.00 4.70
5188 11939 5.435557 GCTATAGCGTGCTATTTGAAACAG 58.564 41.667 18.62 9.74 39.65 3.16
5189 11940 5.403897 GCTATAGCGTGCTATTTGAAACA 57.596 39.130 18.62 0.00 39.65 2.83
5204 11955 6.248631 CAAGACCTTTTGTAAACGCTATAGC 58.751 40.000 15.09 15.09 37.78 2.97
5205 11956 6.248631 GCAAGACCTTTTGTAAACGCTATAG 58.751 40.000 0.00 0.00 0.00 1.31
5206 11957 5.163933 CGCAAGACCTTTTGTAAACGCTATA 60.164 40.000 0.00 0.00 43.02 1.31
5207 11958 4.378046 CGCAAGACCTTTTGTAAACGCTAT 60.378 41.667 0.00 0.00 43.02 2.97
5208 11959 3.059461 CGCAAGACCTTTTGTAAACGCTA 60.059 43.478 0.00 0.00 43.02 4.26
5209 11960 2.286772 CGCAAGACCTTTTGTAAACGCT 60.287 45.455 0.00 0.00 43.02 5.07
5210 11961 2.041244 CGCAAGACCTTTTGTAAACGC 58.959 47.619 0.00 0.00 43.02 4.84
5211 11962 2.041244 GCGCAAGACCTTTTGTAAACG 58.959 47.619 0.30 0.00 43.02 3.60
5212 11963 3.349488 AGCGCAAGACCTTTTGTAAAC 57.651 42.857 11.47 0.00 43.02 2.01
5213 11964 4.817464 TCTTAGCGCAAGACCTTTTGTAAA 59.183 37.500 11.47 0.00 38.39 2.01
5214 11965 4.382291 TCTTAGCGCAAGACCTTTTGTAA 58.618 39.130 11.47 0.00 38.39 2.41
5215 11966 3.994392 CTCTTAGCGCAAGACCTTTTGTA 59.006 43.478 11.47 0.00 38.39 2.41
5216 11967 2.808543 CTCTTAGCGCAAGACCTTTTGT 59.191 45.455 11.47 0.00 38.39 2.83
5217 11968 3.067106 TCTCTTAGCGCAAGACCTTTTG 58.933 45.455 11.47 4.34 38.39 2.44
5218 11969 3.402628 TCTCTTAGCGCAAGACCTTTT 57.597 42.857 11.47 0.00 38.39 2.27
5219 11970 3.618690 ATCTCTTAGCGCAAGACCTTT 57.381 42.857 11.47 0.00 38.39 3.11
5220 11971 3.618690 AATCTCTTAGCGCAAGACCTT 57.381 42.857 11.47 7.86 38.39 3.50
5221 11972 3.618690 AAATCTCTTAGCGCAAGACCT 57.381 42.857 11.47 2.24 38.39 3.85
5222 11973 3.181506 CCAAAATCTCTTAGCGCAAGACC 60.182 47.826 11.47 0.00 38.39 3.85
5223 11974 3.437049 ACCAAAATCTCTTAGCGCAAGAC 59.563 43.478 11.47 0.00 38.39 3.01
5224 11975 3.674997 ACCAAAATCTCTTAGCGCAAGA 58.325 40.909 11.47 15.40 41.10 3.02
5225 11976 3.181506 GGACCAAAATCTCTTAGCGCAAG 60.182 47.826 11.47 11.67 35.38 4.01
5226 11977 2.747446 GGACCAAAATCTCTTAGCGCAA 59.253 45.455 11.47 0.50 0.00 4.85
5227 11978 2.290008 TGGACCAAAATCTCTTAGCGCA 60.290 45.455 11.47 0.00 0.00 6.09
5228 11979 2.356135 TGGACCAAAATCTCTTAGCGC 58.644 47.619 0.00 0.00 0.00 5.92
5229 11980 4.215399 TGTTTGGACCAAAATCTCTTAGCG 59.785 41.667 21.20 0.00 35.03 4.26
5230 11981 5.705609 TGTTTGGACCAAAATCTCTTAGC 57.294 39.130 21.20 6.37 35.03 3.09
5231 11982 8.359642 TCATTTGTTTGGACCAAAATCTCTTAG 58.640 33.333 21.20 7.24 35.03 2.18
5232 11983 8.243961 TCATTTGTTTGGACCAAAATCTCTTA 57.756 30.769 21.20 2.53 35.03 2.10
5233 11984 7.123355 TCATTTGTTTGGACCAAAATCTCTT 57.877 32.000 21.20 2.35 35.03 2.85
5234 11985 6.729690 TCATTTGTTTGGACCAAAATCTCT 57.270 33.333 21.20 3.20 35.03 3.10
5235 11986 6.760770 TGTTCATTTGTTTGGACCAAAATCTC 59.239 34.615 21.20 9.53 35.03 2.75
5236 11987 6.648192 TGTTCATTTGTTTGGACCAAAATCT 58.352 32.000 21.20 4.22 35.03 2.40
5237 11988 6.917217 TGTTCATTTGTTTGGACCAAAATC 57.083 33.333 21.20 10.59 35.03 2.17
5238 11989 7.175641 TGTTTGTTCATTTGTTTGGACCAAAAT 59.824 29.630 21.20 8.88 35.03 1.82
5239 11990 6.486657 TGTTTGTTCATTTGTTTGGACCAAAA 59.513 30.769 21.20 6.76 35.03 2.44
5240 11991 5.997746 TGTTTGTTCATTTGTTTGGACCAAA 59.002 32.000 15.89 15.89 36.34 3.28
5241 11992 5.551233 TGTTTGTTCATTTGTTTGGACCAA 58.449 33.333 1.69 1.69 0.00 3.67
5242 11993 5.152623 TGTTTGTTCATTTGTTTGGACCA 57.847 34.783 0.00 0.00 0.00 4.02
5243 11994 6.676237 AATGTTTGTTCATTTGTTTGGACC 57.324 33.333 0.00 0.00 34.86 4.46
5251 12002 9.039500 GCGCTATTTAAAATGTTTGTTCATTTG 57.961 29.630 0.00 0.00 44.10 2.32
5252 12003 7.949428 CGCGCTATTTAAAATGTTTGTTCATTT 59.051 29.630 5.56 0.00 45.94 2.32
5253 12004 7.444245 CGCGCTATTTAAAATGTTTGTTCATT 58.556 30.769 5.56 0.00 39.35 2.57
5254 12005 6.453659 GCGCGCTATTTAAAATGTTTGTTCAT 60.454 34.615 26.67 0.00 0.00 2.57
5255 12006 5.164138 GCGCGCTATTTAAAATGTTTGTTCA 60.164 36.000 26.67 0.00 0.00 3.18
5256 12007 5.060446 AGCGCGCTATTTAAAATGTTTGTTC 59.940 36.000 35.79 0.00 0.00 3.18
5257 12008 4.920927 AGCGCGCTATTTAAAATGTTTGTT 59.079 33.333 35.79 0.18 0.00 2.83
5258 12009 4.481463 AGCGCGCTATTTAAAATGTTTGT 58.519 34.783 35.79 0.63 0.00 2.83
5259 12010 6.732181 ATAGCGCGCTATTTAAAATGTTTG 57.268 33.333 40.32 0.00 35.92 2.93
5260 12011 6.577427 GCTATAGCGCGCTATTTAAAATGTTT 59.423 34.615 46.76 27.75 39.65 2.83
5261 12012 6.077838 GCTATAGCGCGCTATTTAAAATGTT 58.922 36.000 46.76 28.22 39.65 2.71
5262 12013 5.618561 GCTATAGCGCGCTATTTAAAATGT 58.381 37.500 46.76 28.88 39.65 2.71
5284 12035 0.171455 ATAGCGTGCTATAGCGGAGC 59.829 55.000 22.98 22.98 45.83 4.70
5285 12036 3.326733 CTATAGCGTGCTATAGCGGAG 57.673 52.381 27.04 13.65 46.26 4.63
5291 12042 7.151976 TCTTTCAAATGCTATAGCGTGCTATA 58.848 34.615 20.02 17.96 45.83 1.31
5292 12043 5.991606 TCTTTCAAATGCTATAGCGTGCTAT 59.008 36.000 20.02 17.65 45.83 2.97
5293 12044 5.356426 TCTTTCAAATGCTATAGCGTGCTA 58.644 37.500 20.02 3.73 45.83 3.49
5294 12045 4.191544 TCTTTCAAATGCTATAGCGTGCT 58.808 39.130 20.02 7.98 45.83 4.40
5295 12046 4.521943 CTCTTTCAAATGCTATAGCGTGC 58.478 43.478 20.02 0.00 45.83 5.34
5296 12047 4.572389 ACCTCTTTCAAATGCTATAGCGTG 59.428 41.667 20.02 16.47 45.83 5.34
5297 12048 4.770795 ACCTCTTTCAAATGCTATAGCGT 58.229 39.130 19.55 16.84 45.83 5.07
5298 12049 4.212214 GGACCTCTTTCAAATGCTATAGCG 59.788 45.833 19.55 5.67 45.83 4.26
5299 12050 4.212214 CGGACCTCTTTCAAATGCTATAGC 59.788 45.833 18.18 18.18 42.50 2.97
5300 12051 4.752101 CCGGACCTCTTTCAAATGCTATAG 59.248 45.833 0.00 0.00 0.00 1.31
5301 12052 4.703897 CCGGACCTCTTTCAAATGCTATA 58.296 43.478 0.00 0.00 0.00 1.31
5302 12053 3.545703 CCGGACCTCTTTCAAATGCTAT 58.454 45.455 0.00 0.00 0.00 2.97
5303 12054 2.939640 GCCGGACCTCTTTCAAATGCTA 60.940 50.000 5.05 0.00 0.00 3.49
5304 12055 1.826385 CCGGACCTCTTTCAAATGCT 58.174 50.000 0.00 0.00 0.00 3.79
5305 12056 0.171231 GCCGGACCTCTTTCAAATGC 59.829 55.000 5.05 0.00 0.00 3.56
5306 12057 0.447801 CGCCGGACCTCTTTCAAATG 59.552 55.000 5.05 0.00 0.00 2.32
5307 12058 1.305930 GCGCCGGACCTCTTTCAAAT 61.306 55.000 5.05 0.00 0.00 2.32
5308 12059 1.964373 GCGCCGGACCTCTTTCAAA 60.964 57.895 5.05 0.00 0.00 2.69
5309 12060 1.537814 TAGCGCCGGACCTCTTTCAA 61.538 55.000 5.05 0.00 0.00 2.69
5310 12061 1.537814 TTAGCGCCGGACCTCTTTCA 61.538 55.000 5.05 0.00 0.00 2.69
5311 12062 0.806492 CTTAGCGCCGGACCTCTTTC 60.806 60.000 5.05 0.00 0.00 2.62
5312 12063 1.218316 CTTAGCGCCGGACCTCTTT 59.782 57.895 5.05 0.00 0.00 2.52
5313 12064 1.043673 ATCTTAGCGCCGGACCTCTT 61.044 55.000 5.05 0.00 0.00 2.85
5314 12065 1.455959 ATCTTAGCGCCGGACCTCT 60.456 57.895 5.05 0.00 0.00 3.69
5315 12066 1.300233 CATCTTAGCGCCGGACCTC 60.300 63.158 5.05 0.00 0.00 3.85
5316 12067 2.815308 CATCTTAGCGCCGGACCT 59.185 61.111 5.05 1.80 0.00 3.85
5317 12068 2.925162 AAGCATCTTAGCGCCGGACC 62.925 60.000 5.05 0.00 40.15 4.46
5318 12069 0.249322 TAAGCATCTTAGCGCCGGAC 60.249 55.000 5.05 0.00 40.15 4.79
5319 12070 0.032130 CTAAGCATCTTAGCGCCGGA 59.968 55.000 5.05 0.00 40.15 5.14
5320 12071 1.560860 GCTAAGCATCTTAGCGCCGG 61.561 60.000 18.95 0.00 38.12 6.13
5321 12072 1.856012 GCTAAGCATCTTAGCGCCG 59.144 57.895 18.95 0.00 38.12 6.46
5333 12084 3.936661 AGTTTTAAATAGCGCGCTAAGC 58.063 40.909 40.90 27.92 43.95 3.09
5334 12085 6.019152 TCAAAGTTTTAAATAGCGCGCTAAG 58.981 36.000 40.90 16.07 31.73 2.18
5335 12086 5.929278 TCAAAGTTTTAAATAGCGCGCTAA 58.071 33.333 40.90 26.03 31.73 3.09
5336 12087 5.533533 TCAAAGTTTTAAATAGCGCGCTA 57.466 34.783 39.72 39.72 0.00 4.26
5337 12088 4.413495 TCAAAGTTTTAAATAGCGCGCT 57.587 36.364 38.01 38.01 0.00 5.92
5338 12089 5.489011 TTTCAAAGTTTTAAATAGCGCGC 57.511 34.783 26.66 26.66 0.00 6.86
5339 12090 8.817296 CAAAATTTCAAAGTTTTAAATAGCGCG 58.183 29.630 0.00 0.00 0.00 6.86
5340 12091 8.618109 GCAAAATTTCAAAGTTTTAAATAGCGC 58.382 29.630 0.00 0.00 0.00 5.92
5341 12092 9.643652 TGCAAAATTTCAAAGTTTTAAATAGCG 57.356 25.926 7.92 2.37 0.00 4.26
5345 12096 9.579768 GGGTTGCAAAATTTCAAAGTTTTAAAT 57.420 25.926 0.00 2.54 0.00 1.40
5346 12097 8.576442 TGGGTTGCAAAATTTCAAAGTTTTAAA 58.424 25.926 0.00 0.00 0.00 1.52
5347 12098 8.110860 TGGGTTGCAAAATTTCAAAGTTTTAA 57.889 26.923 0.00 0.00 0.00 1.52
5348 12099 7.687941 TGGGTTGCAAAATTTCAAAGTTTTA 57.312 28.000 0.00 0.00 0.00 1.52
5349 12100 6.581171 TGGGTTGCAAAATTTCAAAGTTTT 57.419 29.167 0.00 0.00 0.00 2.43
5350 12101 6.208402 AGTTGGGTTGCAAAATTTCAAAGTTT 59.792 30.769 0.00 0.00 0.00 2.66
5351 12102 5.709631 AGTTGGGTTGCAAAATTTCAAAGTT 59.290 32.000 0.00 0.00 0.00 2.66
5352 12103 5.252547 AGTTGGGTTGCAAAATTTCAAAGT 58.747 33.333 0.00 0.00 0.00 2.66
5353 12104 5.816449 AGTTGGGTTGCAAAATTTCAAAG 57.184 34.783 0.00 0.00 0.00 2.77
5354 12105 5.707298 TCAAGTTGGGTTGCAAAATTTCAAA 59.293 32.000 0.00 0.00 0.00 2.69
5355 12106 5.248640 TCAAGTTGGGTTGCAAAATTTCAA 58.751 33.333 0.00 0.00 0.00 2.69
5356 12107 4.836825 TCAAGTTGGGTTGCAAAATTTCA 58.163 34.783 0.00 0.00 0.00 2.69
5357 12108 5.809719 TTCAAGTTGGGTTGCAAAATTTC 57.190 34.783 0.00 0.00 0.00 2.17
5358 12109 6.183360 GGATTTCAAGTTGGGTTGCAAAATTT 60.183 34.615 0.00 0.00 0.00 1.82
5359 12110 5.299028 GGATTTCAAGTTGGGTTGCAAAATT 59.701 36.000 0.00 0.00 0.00 1.82
5360 12111 4.821260 GGATTTCAAGTTGGGTTGCAAAAT 59.179 37.500 0.00 0.00 0.00 1.82
5361 12112 4.195416 GGATTTCAAGTTGGGTTGCAAAA 58.805 39.130 0.00 0.00 0.00 2.44
5362 12113 3.432890 GGGATTTCAAGTTGGGTTGCAAA 60.433 43.478 0.00 0.00 0.00 3.68
5363 12114 2.103941 GGGATTTCAAGTTGGGTTGCAA 59.896 45.455 2.34 0.00 0.00 4.08
5364 12115 1.691434 GGGATTTCAAGTTGGGTTGCA 59.309 47.619 2.34 0.00 0.00 4.08
5365 12116 1.691434 TGGGATTTCAAGTTGGGTTGC 59.309 47.619 2.34 0.00 0.00 4.17
5366 12117 2.965147 ACTGGGATTTCAAGTTGGGTTG 59.035 45.455 2.34 0.00 0.00 3.77
5367 12118 3.230976 GACTGGGATTTCAAGTTGGGTT 58.769 45.455 2.34 0.00 0.00 4.11
5368 12119 2.176798 TGACTGGGATTTCAAGTTGGGT 59.823 45.455 2.34 0.00 0.00 4.51
5369 12120 2.875296 TGACTGGGATTTCAAGTTGGG 58.125 47.619 2.34 0.00 0.00 4.12
5370 12121 5.473066 AAATGACTGGGATTTCAAGTTGG 57.527 39.130 2.34 0.00 0.00 3.77
5391 12142 7.039853 TGGACAAGACTGCATTGATTGAAATAA 60.040 33.333 5.55 0.00 0.00 1.40
5433 12184 6.179906 AGTGGATGTATTTAGTCCATCTGG 57.820 41.667 0.00 0.00 43.38 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.