Multiple sequence alignment - TraesCS2B01G451000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G451000 chr2B 100.000 2904 0 0 1 2904 644170121 644167218 0.000000e+00 5363.0
1 TraesCS2B01G451000 chr2D 86.195 2586 154 85 9 2477 539897213 539894714 0.000000e+00 2610.0
2 TraesCS2B01G451000 chr2D 88.889 162 16 2 2581 2741 539894720 539894560 6.350000e-47 198.0
3 TraesCS2B01G451000 chr2A 88.168 1496 92 53 535 1973 683537435 683535968 0.000000e+00 1703.0
4 TraesCS2B01G451000 chr2A 87.342 474 31 16 2366 2828 683535536 683535081 1.540000e-142 516.0
5 TraesCS2B01G451000 chr3A 94.444 36 0 2 1717 1750 574433550 574433515 1.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G451000 chr2B 644167218 644170121 2903 True 5363.0 5363 100.000 1 2904 1 chr2B.!!$R1 2903
1 TraesCS2B01G451000 chr2D 539894560 539897213 2653 True 1404.0 2610 87.542 9 2741 2 chr2D.!!$R1 2732
2 TraesCS2B01G451000 chr2A 683535081 683537435 2354 True 1109.5 1703 87.755 535 2828 2 chr2A.!!$R1 2293

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
217 221 0.040058 ATGGCAGCTTTGGGACATCA 59.960 50.0 0.0 0.0 39.30 3.07 F
321 325 0.708918 GCGTCAACAGCTCGTTCTAC 59.291 55.0 0.0 0.0 34.86 2.59 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1037 1074 0.037975 GTGGTTTTACGAGGGAGCGA 60.038 55.0 0.0 0.0 34.83 4.93 R
2296 2495 0.602638 TTGCCTCATGTGACGACCAC 60.603 55.0 0.0 0.0 45.88 4.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 5.571784 TCTTTATCGAGTTAGCCTTTCGA 57.428 39.130 0.00 0.00 45.96 3.71
55 56 6.434652 TCGAGTTTCAATCCTTCTCTAGTTCT 59.565 38.462 0.00 0.00 0.00 3.01
61 62 7.118496 TCAATCCTTCTCTAGTTCTTCCATC 57.882 40.000 0.00 0.00 0.00 3.51
62 63 5.782893 ATCCTTCTCTAGTTCTTCCATCG 57.217 43.478 0.00 0.00 0.00 3.84
64 65 3.068873 CCTTCTCTAGTTCTTCCATCGGG 59.931 52.174 0.00 0.00 0.00 5.14
87 91 2.554806 TAGTCGATGTTGCGGTGTAG 57.445 50.000 0.00 0.00 0.00 2.74
96 100 2.946329 TGTTGCGGTGTAGAACATGTTT 59.054 40.909 13.36 5.60 0.00 2.83
108 112 3.138283 AGAACATGTTTGTCTCCTTGGGA 59.862 43.478 13.36 0.00 34.06 4.37
109 113 2.863809 ACATGTTTGTCTCCTTGGGAC 58.136 47.619 0.00 0.00 0.00 4.46
116 120 1.272816 TGTCTCCTTGGGACGGTGATA 60.273 52.381 0.00 0.00 36.58 2.15
120 124 4.100498 GTCTCCTTGGGACGGTGATATTAA 59.900 45.833 0.00 0.00 0.00 1.40
122 126 4.291792 TCCTTGGGACGGTGATATTAAGA 58.708 43.478 0.00 0.00 0.00 2.10
140 144 7.609760 ATTAAGATTTCTTGATGTACGTGCA 57.390 32.000 9.28 9.28 37.40 4.57
143 147 5.237815 AGATTTCTTGATGTACGTGCAAGA 58.762 37.500 11.22 18.25 44.33 3.02
145 149 3.378911 TCTTGATGTACGTGCAAGACA 57.621 42.857 11.22 8.76 42.03 3.41
147 151 4.314961 TCTTGATGTACGTGCAAGACAAT 58.685 39.130 11.22 0.00 42.03 2.71
149 153 3.398406 TGATGTACGTGCAAGACAATGT 58.602 40.909 11.22 0.00 0.00 2.71
154 158 3.542712 ACGTGCAAGACAATGTGATTC 57.457 42.857 6.65 0.00 0.00 2.52
155 159 2.877786 ACGTGCAAGACAATGTGATTCA 59.122 40.909 6.65 0.00 0.00 2.57
158 162 4.224433 GTGCAAGACAATGTGATTCAGTG 58.776 43.478 0.00 0.00 45.98 3.66
165 169 4.317804 CAATGTGATTCAGTGTGAGACG 57.682 45.455 0.00 0.00 37.36 4.18
166 170 1.783284 TGTGATTCAGTGTGAGACGC 58.217 50.000 0.00 0.00 0.00 5.19
167 171 1.341209 TGTGATTCAGTGTGAGACGCT 59.659 47.619 0.00 0.00 39.99 5.07
168 172 2.224042 TGTGATTCAGTGTGAGACGCTT 60.224 45.455 0.00 0.00 36.71 4.68
169 173 2.410053 GTGATTCAGTGTGAGACGCTTC 59.590 50.000 0.00 0.00 36.71 3.86
170 174 1.651138 GATTCAGTGTGAGACGCTTCG 59.349 52.381 0.00 0.00 36.71 3.79
181 185 4.026475 GTGAGACGCTTCGGATCAATTTAG 60.026 45.833 0.00 0.00 30.12 1.85
182 186 3.458189 AGACGCTTCGGATCAATTTAGG 58.542 45.455 0.00 0.00 0.00 2.69
185 189 2.745152 CGCTTCGGATCAATTTAGGGGT 60.745 50.000 0.00 0.00 0.00 4.95
214 218 1.675310 CGATGGCAGCTTTGGGACA 60.675 57.895 0.00 0.00 0.00 4.02
215 219 1.033746 CGATGGCAGCTTTGGGACAT 61.034 55.000 0.00 0.00 39.30 3.06
216 220 0.743097 GATGGCAGCTTTGGGACATC 59.257 55.000 2.12 2.12 39.30 3.06
217 221 0.040058 ATGGCAGCTTTGGGACATCA 59.960 50.000 0.00 0.00 39.30 3.07
220 224 1.135721 GGCAGCTTTGGGACATCAATC 59.864 52.381 0.00 0.00 39.30 2.67
221 225 2.097825 GCAGCTTTGGGACATCAATCT 58.902 47.619 0.00 0.00 39.30 2.40
228 232 5.452356 GCTTTGGGACATCAATCTTTATGGG 60.452 44.000 0.00 0.00 39.30 4.00
229 233 4.879295 TGGGACATCAATCTTTATGGGT 57.121 40.909 0.00 0.00 0.00 4.51
247 251 3.264193 TGGGTATGTGCATGAAGACTTCT 59.736 43.478 16.02 0.00 0.00 2.85
248 252 4.263462 TGGGTATGTGCATGAAGACTTCTT 60.263 41.667 16.02 7.24 39.23 2.52
267 271 5.482163 TCTTGACTGTCATTGACATGGTA 57.518 39.130 19.29 4.81 41.94 3.25
284 288 1.134189 GGTAAAGCCGGCTCTGGTAAT 60.134 52.381 32.93 9.57 0.00 1.89
285 289 2.103601 GGTAAAGCCGGCTCTGGTAATA 59.896 50.000 32.93 11.36 0.00 0.98
296 300 4.040461 GGCTCTGGTAATAGAGTGGCAATA 59.960 45.833 0.00 0.00 44.77 1.90
298 302 6.234177 GCTCTGGTAATAGAGTGGCAATAAT 58.766 40.000 0.00 0.00 44.77 1.28
302 306 5.989168 TGGTAATAGAGTGGCAATAATGACG 59.011 40.000 0.00 0.00 37.40 4.35
308 312 1.129624 GTGGCAATAATGACGCGTCAA 59.870 47.619 41.74 28.81 43.58 3.18
310 314 1.129624 GGCAATAATGACGCGTCAACA 59.870 47.619 41.74 31.63 43.58 3.33
320 324 0.728129 CGCGTCAACAGCTCGTTCTA 60.728 55.000 0.00 0.00 34.86 2.10
321 325 0.708918 GCGTCAACAGCTCGTTCTAC 59.291 55.000 0.00 0.00 34.86 2.59
329 333 1.132643 CAGCTCGTTCTACTAGCGGTT 59.867 52.381 0.00 0.00 41.23 4.44
334 338 1.200716 CGTTCTACTAGCGGTTGTGGA 59.799 52.381 10.80 10.80 0.00 4.02
335 339 2.159282 CGTTCTACTAGCGGTTGTGGAT 60.159 50.000 14.91 0.00 0.00 3.41
337 341 4.261489 CGTTCTACTAGCGGTTGTGGATAT 60.261 45.833 14.91 0.00 0.00 1.63
340 344 3.093717 ACTAGCGGTTGTGGATATTCG 57.906 47.619 0.00 0.00 0.00 3.34
346 350 2.285977 GGTTGTGGATATTCGGTGGTC 58.714 52.381 0.00 0.00 0.00 4.02
356 360 2.401583 TTCGGTGGTCCATGAATCTG 57.598 50.000 0.00 0.00 0.00 2.90
371 375 7.663081 TCCATGAATCTGGATGTAATTCTTAGC 59.337 37.037 0.00 0.00 40.43 3.09
387 391 2.008242 TAGCATGTTTGGGGTGCTTT 57.992 45.000 4.31 0.00 46.29 3.51
392 396 3.556843 GCATGTTTGGGGTGCTTTTGTAT 60.557 43.478 0.00 0.00 36.02 2.29
400 404 4.704540 TGGGGTGCTTTTGTATATTCAGTG 59.295 41.667 0.00 0.00 0.00 3.66
402 406 5.417580 GGGGTGCTTTTGTATATTCAGTGAA 59.582 40.000 8.27 8.27 0.00 3.18
405 409 6.151144 GGTGCTTTTGTATATTCAGTGAACCT 59.849 38.462 7.96 0.88 0.00 3.50
442 446 9.713684 TCCAGATCCCTTTTCACAAAAATATAT 57.286 29.630 0.00 0.00 34.00 0.86
474 478 4.215109 AGTGTTTTTATGCACTTCCACCT 58.785 39.130 0.00 0.00 42.61 4.00
493 497 4.450080 CACCTTACGACCCTAACAAACTTC 59.550 45.833 0.00 0.00 0.00 3.01
561 565 9.847224 AAAAACAGTAGAGTAAAATCCAAGAGA 57.153 29.630 0.00 0.00 0.00 3.10
593 598 9.398538 GACTATATACTTCATTCCGATCTACCT 57.601 37.037 0.00 0.00 0.00 3.08
596 601 6.978674 ATACTTCATTCCGATCTACCTTGA 57.021 37.500 0.00 0.00 0.00 3.02
597 602 5.878406 ACTTCATTCCGATCTACCTTGAT 57.122 39.130 0.00 0.00 0.00 2.57
598 603 5.848406 ACTTCATTCCGATCTACCTTGATC 58.152 41.667 0.00 0.00 39.40 2.92
737 746 2.938428 TTTCCCCAAGGTGGCAATAT 57.062 45.000 0.00 0.00 35.79 1.28
825 835 8.408043 ACTACTCCATTATTCAGAGAGATCAG 57.592 38.462 0.00 0.00 0.00 2.90
826 836 8.224025 ACTACTCCATTATTCAGAGAGATCAGA 58.776 37.037 0.00 0.00 0.00 3.27
830 840 8.544687 TCCATTATTCAGAGAGATCAGAAGAA 57.455 34.615 0.00 0.00 0.00 2.52
831 841 8.640651 TCCATTATTCAGAGAGATCAGAAGAAG 58.359 37.037 0.00 0.00 0.00 2.85
963 976 1.391933 CCCTTTAAATGCCCCCTCGC 61.392 60.000 0.00 0.00 0.00 5.03
1017 1054 3.150767 CACACCCAAAATCCCGTAGAAA 58.849 45.455 0.00 0.00 0.00 2.52
1037 1074 3.493767 AAAGGAGAAAGGAAACGCTCT 57.506 42.857 0.00 0.00 0.00 4.09
1043 1080 0.670854 AAAGGAAACGCTCTCGCTCC 60.671 55.000 0.00 0.00 39.80 4.70
1045 1082 2.574399 GAAACGCTCTCGCTCCCT 59.426 61.111 0.00 0.00 39.84 4.20
1047 1084 3.343788 AAACGCTCTCGCTCCCTCG 62.344 63.158 0.00 0.00 39.84 4.63
1063 1103 4.092652 CGTAAAACCACCGCCCGC 62.093 66.667 0.00 0.00 0.00 6.13
1064 1104 3.740397 GTAAAACCACCGCCCGCC 61.740 66.667 0.00 0.00 0.00 6.13
1195 1235 3.164011 CGTCGCGTCGAAGGACAC 61.164 66.667 20.81 0.00 43.61 3.67
1196 1236 3.164011 GTCGCGTCGAAGGACACG 61.164 66.667 5.77 0.00 47.00 4.49
1637 1699 2.250237 GCTCTGCAGATAAGCCCGC 61.250 63.158 18.63 11.55 0.00 6.13
1695 1761 1.263356 TAGCAGTACCTGACCACCAC 58.737 55.000 0.00 0.00 32.44 4.16
1747 1827 5.470098 TCTCCATTTTTCTTCTTCTTCGGTG 59.530 40.000 0.00 0.00 0.00 4.94
1762 1842 1.282875 GGTGGTGTTTTCTCAGCGC 59.717 57.895 0.00 0.00 42.94 5.92
1787 1867 1.301009 GGCGAGGGATGATTCGACC 60.301 63.158 0.00 0.00 38.89 4.79
1789 1869 0.105039 GCGAGGGATGATTCGACCTT 59.895 55.000 0.00 0.00 39.06 3.50
1888 1977 3.244422 GGATTAGCCGGGTGATGTAATGA 60.244 47.826 16.45 0.00 0.00 2.57
1889 1978 3.916359 TTAGCCGGGTGATGTAATGAA 57.084 42.857 18.40 0.00 0.00 2.57
1890 1979 2.038387 AGCCGGGTGATGTAATGAAC 57.962 50.000 4.72 0.00 0.00 3.18
1891 1980 1.559682 AGCCGGGTGATGTAATGAACT 59.440 47.619 4.72 0.00 0.00 3.01
1892 1981 1.670811 GCCGGGTGATGTAATGAACTG 59.329 52.381 2.18 0.00 0.00 3.16
1980 2109 6.932356 TTCTATCTTGATTGATCTGTTGCC 57.068 37.500 0.00 0.00 0.00 4.52
2002 2131 4.158394 CCATGTCACCGGAAAGATTTTGAT 59.842 41.667 9.46 0.00 0.00 2.57
2049 2182 3.794717 TGGCCTTTACATATTTCGCGTA 58.205 40.909 5.77 0.00 0.00 4.42
2066 2208 1.454295 TAGTACATCTCGCCGGCCA 60.454 57.895 23.46 7.41 0.00 5.36
2067 2209 0.826256 TAGTACATCTCGCCGGCCAT 60.826 55.000 23.46 7.71 0.00 4.40
2068 2210 1.227556 GTACATCTCGCCGGCCATT 60.228 57.895 23.46 0.00 0.00 3.16
2150 2292 2.543578 CATGTGTTGCAGTACGCCT 58.456 52.632 7.13 0.00 41.33 5.52
2177 2328 2.099098 CCCGCTGGTAAAATGAATCCAC 59.901 50.000 0.00 0.00 0.00 4.02
2213 2367 2.094182 ACTGCGTGGTACAATTCGATCT 60.094 45.455 0.00 0.00 44.16 2.75
2215 2369 3.441163 TGCGTGGTACAATTCGATCTAC 58.559 45.455 0.00 0.00 44.16 2.59
2242 2413 2.192861 CACCACATGCACCCAACGT 61.193 57.895 0.00 0.00 0.00 3.99
2247 2418 2.223829 CCACATGCACCCAACGTTTTTA 60.224 45.455 0.00 0.00 0.00 1.52
2249 2420 4.321304 CCACATGCACCCAACGTTTTTATA 60.321 41.667 0.00 0.00 0.00 0.98
2252 2423 6.470877 CACATGCACCCAACGTTTTTATATAC 59.529 38.462 0.00 0.00 0.00 1.47
2254 2425 6.184580 TGCACCCAACGTTTTTATATACAG 57.815 37.500 0.00 0.00 0.00 2.74
2296 2495 6.213677 GGAGCCTTTTTACTGTTTTTACCAG 58.786 40.000 0.00 0.00 36.01 4.00
2318 2517 1.512926 GTCGTCACATGAGGCAAAGT 58.487 50.000 0.00 0.00 0.00 2.66
2320 2519 0.110056 CGTCACATGAGGCAAAGTGC 60.110 55.000 0.00 0.00 44.08 4.40
2364 2584 0.451783 GCCATGGGCTAAAACTCACG 59.548 55.000 15.13 0.00 46.69 4.35
2426 2646 3.119459 ACGAAGCTAGGTGACATACAGTG 60.119 47.826 0.00 0.00 0.00 3.66
2428 2648 2.461695 AGCTAGGTGACATACAGTGCT 58.538 47.619 0.00 0.00 0.00 4.40
2447 2667 0.609662 TAGTAGGGACAAACACGGCC 59.390 55.000 0.00 0.00 0.00 6.13
2474 2694 1.067295 TCATGAAGGCCACTGTTCCT 58.933 50.000 5.01 0.00 0.00 3.36
2487 2707 4.508128 TTCCTGTCGATCGCGCCC 62.508 66.667 11.09 0.00 37.46 6.13
2502 2722 4.404098 CCCCACCGTACCTGCACC 62.404 72.222 0.00 0.00 0.00 5.01
2504 2724 4.752879 CCACCGTACCTGCACCGG 62.753 72.222 0.00 0.00 46.93 5.28
2547 2771 1.300931 GGCTGCTGTCTGTCGTCAA 60.301 57.895 0.00 0.00 0.00 3.18
2561 2785 3.691342 TCAAGGTCGTGCCCCTCG 61.691 66.667 0.00 0.00 38.26 4.63
2570 2794 4.988716 TGCCCCTCGTCAGTCGGT 62.989 66.667 0.00 0.00 40.32 4.69
2603 2831 5.389859 TCATGTGCTTAATTTCCTTGTGG 57.610 39.130 0.00 0.00 0.00 4.17
2660 2890 2.298610 ACCTTCAGAGATGCATGCATG 58.701 47.619 36.73 23.75 36.70 4.06
2662 2892 1.001268 CTTCAGAGATGCATGCATGGC 60.001 52.381 36.73 25.77 36.70 4.40
2670 2900 1.226491 GCATGCATGGCGTCTGTTC 60.226 57.895 27.34 4.17 0.00 3.18
2693 2923 1.073284 GGCTCAGTTCAGTTTACCCCA 59.927 52.381 0.00 0.00 0.00 4.96
2698 2928 5.475564 GCTCAGTTCAGTTTACCCCATTTAA 59.524 40.000 0.00 0.00 0.00 1.52
2741 2973 4.263572 CCACAGTGCAACCGGGGA 62.264 66.667 6.32 0.00 37.80 4.81
2743 2975 2.203294 ACAGTGCAACCGGGGAAC 60.203 61.111 6.32 1.63 37.80 3.62
2791 3023 3.442996 GCATCTAGCACAACGGAGT 57.557 52.632 0.00 0.00 44.85 3.85
2792 3024 2.579207 GCATCTAGCACAACGGAGTA 57.421 50.000 0.00 0.00 42.46 2.59
2793 3025 3.099267 GCATCTAGCACAACGGAGTAT 57.901 47.619 0.00 0.00 42.46 2.12
2794 3026 3.458189 GCATCTAGCACAACGGAGTATT 58.542 45.455 0.00 0.00 42.46 1.89
2795 3027 4.617959 GCATCTAGCACAACGGAGTATTA 58.382 43.478 0.00 0.00 42.46 0.98
2805 3037 6.238953 GCACAACGGAGTATTAGAGGATCTTA 60.239 42.308 0.00 0.00 43.80 2.10
2828 3060 3.396260 TTTTGAACGGACGAGGATCTT 57.604 42.857 0.00 0.00 0.00 2.40
2829 3061 2.649331 TTGAACGGACGAGGATCTTC 57.351 50.000 0.00 0.00 31.73 2.87
2830 3062 1.541379 TGAACGGACGAGGATCTTCA 58.459 50.000 5.61 0.00 34.65 3.02
2831 3063 2.100197 TGAACGGACGAGGATCTTCAT 58.900 47.619 5.61 0.00 34.65 2.57
2832 3064 2.099263 TGAACGGACGAGGATCTTCATC 59.901 50.000 5.61 0.00 34.65 2.92
2833 3065 2.060050 ACGGACGAGGATCTTCATCT 57.940 50.000 5.61 0.00 34.65 2.90
2834 3066 3.210232 ACGGACGAGGATCTTCATCTA 57.790 47.619 5.61 0.00 34.65 1.98
2835 3067 3.552875 ACGGACGAGGATCTTCATCTAA 58.447 45.455 5.61 0.00 34.65 2.10
2836 3068 3.315749 ACGGACGAGGATCTTCATCTAAC 59.684 47.826 5.61 0.00 34.65 2.34
2837 3069 3.566322 CGGACGAGGATCTTCATCTAACT 59.434 47.826 5.61 0.00 34.65 2.24
2838 3070 4.755629 CGGACGAGGATCTTCATCTAACTA 59.244 45.833 5.61 0.00 34.65 2.24
2839 3071 5.238868 CGGACGAGGATCTTCATCTAACTAA 59.761 44.000 5.61 0.00 34.65 2.24
2840 3072 6.440436 GGACGAGGATCTTCATCTAACTAAC 58.560 44.000 5.61 0.00 34.65 2.34
2841 3073 6.039493 GGACGAGGATCTTCATCTAACTAACA 59.961 42.308 5.61 0.00 34.65 2.41
2842 3074 7.406031 ACGAGGATCTTCATCTAACTAACAA 57.594 36.000 5.61 0.00 0.00 2.83
2843 3075 7.837863 ACGAGGATCTTCATCTAACTAACAAA 58.162 34.615 5.61 0.00 0.00 2.83
2844 3076 7.760340 ACGAGGATCTTCATCTAACTAACAAAC 59.240 37.037 5.61 0.00 0.00 2.93
2845 3077 7.222999 CGAGGATCTTCATCTAACTAACAAACC 59.777 40.741 5.61 0.00 0.00 3.27
2846 3078 7.339482 AGGATCTTCATCTAACTAACAAACCC 58.661 38.462 0.00 0.00 0.00 4.11
2847 3079 7.182930 AGGATCTTCATCTAACTAACAAACCCT 59.817 37.037 0.00 0.00 0.00 4.34
2848 3080 8.483758 GGATCTTCATCTAACTAACAAACCCTA 58.516 37.037 0.00 0.00 0.00 3.53
2849 3081 9.315525 GATCTTCATCTAACTAACAAACCCTAC 57.684 37.037 0.00 0.00 0.00 3.18
2850 3082 8.431910 TCTTCATCTAACTAACAAACCCTACT 57.568 34.615 0.00 0.00 0.00 2.57
2851 3083 8.877195 TCTTCATCTAACTAACAAACCCTACTT 58.123 33.333 0.00 0.00 0.00 2.24
2852 3084 9.503399 CTTCATCTAACTAACAAACCCTACTTT 57.497 33.333 0.00 0.00 0.00 2.66
2853 3085 9.498176 TTCATCTAACTAACAAACCCTACTTTC 57.502 33.333 0.00 0.00 0.00 2.62
2854 3086 8.877195 TCATCTAACTAACAAACCCTACTTTCT 58.123 33.333 0.00 0.00 0.00 2.52
2855 3087 9.503399 CATCTAACTAACAAACCCTACTTTCTT 57.497 33.333 0.00 0.00 0.00 2.52
2860 3092 9.690913 AACTAACAAACCCTACTTTCTTTACTT 57.309 29.630 0.00 0.00 0.00 2.24
2861 3093 9.334947 ACTAACAAACCCTACTTTCTTTACTTC 57.665 33.333 0.00 0.00 0.00 3.01
2862 3094 9.333724 CTAACAAACCCTACTTTCTTTACTTCA 57.666 33.333 0.00 0.00 0.00 3.02
2863 3095 8.584063 AACAAACCCTACTTTCTTTACTTCAA 57.416 30.769 0.00 0.00 0.00 2.69
2864 3096 8.584063 ACAAACCCTACTTTCTTTACTTCAAA 57.416 30.769 0.00 0.00 0.00 2.69
2865 3097 9.027202 ACAAACCCTACTTTCTTTACTTCAAAA 57.973 29.630 0.00 0.00 0.00 2.44
2866 3098 9.863845 CAAACCCTACTTTCTTTACTTCAAAAA 57.136 29.630 0.00 0.00 0.00 1.94
2885 3117 5.405935 AAAAACCAATCCTGCTTATCCAC 57.594 39.130 0.00 0.00 0.00 4.02
2886 3118 2.332063 ACCAATCCTGCTTATCCACG 57.668 50.000 0.00 0.00 0.00 4.94
2887 3119 1.837439 ACCAATCCTGCTTATCCACGA 59.163 47.619 0.00 0.00 0.00 4.35
2888 3120 2.158900 ACCAATCCTGCTTATCCACGAG 60.159 50.000 0.00 0.00 0.00 4.18
2889 3121 2.103094 CCAATCCTGCTTATCCACGAGA 59.897 50.000 0.00 0.00 0.00 4.04
2890 3122 3.388308 CAATCCTGCTTATCCACGAGAG 58.612 50.000 0.00 0.00 0.00 3.20
2891 3123 2.437085 TCCTGCTTATCCACGAGAGA 57.563 50.000 0.00 0.00 0.00 3.10
2892 3124 2.950781 TCCTGCTTATCCACGAGAGAT 58.049 47.619 0.00 0.00 0.00 2.75
2893 3125 2.887783 TCCTGCTTATCCACGAGAGATC 59.112 50.000 0.00 0.00 0.00 2.75
2894 3126 2.890311 CCTGCTTATCCACGAGAGATCT 59.110 50.000 0.00 0.00 0.00 2.75
2895 3127 3.305267 CCTGCTTATCCACGAGAGATCTG 60.305 52.174 0.00 0.00 0.00 2.90
2896 3128 2.035193 TGCTTATCCACGAGAGATCTGC 59.965 50.000 0.00 0.00 0.00 4.26
2897 3129 2.920227 GCTTATCCACGAGAGATCTGCG 60.920 54.545 0.00 6.49 0.00 5.18
2898 3130 1.968704 TATCCACGAGAGATCTGCGT 58.031 50.000 12.92 12.92 39.04 5.24
2899 3131 1.968704 ATCCACGAGAGATCTGCGTA 58.031 50.000 16.95 6.35 36.37 4.42
2900 3132 1.015109 TCCACGAGAGATCTGCGTAC 58.985 55.000 16.95 0.00 36.37 3.67
2901 3133 0.029567 CCACGAGAGATCTGCGTACC 59.970 60.000 16.95 0.00 36.37 3.34
2902 3134 0.029567 CACGAGAGATCTGCGTACCC 59.970 60.000 16.95 0.00 36.37 3.69
2903 3135 0.393944 ACGAGAGATCTGCGTACCCA 60.394 55.000 16.13 0.00 36.37 4.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
15 16 4.978083 AACTCGAAAGGCTAACTCGATA 57.022 40.909 14.25 0.00 40.52 2.92
16 17 3.870633 AACTCGAAAGGCTAACTCGAT 57.129 42.857 14.25 1.68 40.52 3.59
22 23 4.906618 AGGATTGAAACTCGAAAGGCTAA 58.093 39.130 0.00 0.00 0.00 3.09
24 25 3.425162 AGGATTGAAACTCGAAAGGCT 57.575 42.857 0.00 0.00 0.00 4.58
25 26 3.753797 AGAAGGATTGAAACTCGAAAGGC 59.246 43.478 0.00 0.00 0.00 4.35
26 27 5.241662 AGAGAAGGATTGAAACTCGAAAGG 58.758 41.667 0.00 0.00 33.53 3.11
33 34 7.016661 TGGAAGAACTAGAGAAGGATTGAAACT 59.983 37.037 0.00 0.00 0.00 2.66
61 62 2.251040 CGCAACATCGACTATATCCCG 58.749 52.381 0.00 0.00 0.00 5.14
62 63 2.029290 ACCGCAACATCGACTATATCCC 60.029 50.000 0.00 0.00 0.00 3.85
64 65 3.639538 ACACCGCAACATCGACTATATC 58.360 45.455 0.00 0.00 0.00 1.63
77 78 2.946329 ACAAACATGTTCTACACCGCAA 59.054 40.909 12.39 0.00 0.00 4.85
79 83 2.806244 AGACAAACATGTTCTACACCGC 59.194 45.455 12.39 0.00 0.00 5.68
87 91 3.253432 GTCCCAAGGAGACAAACATGTTC 59.747 47.826 12.39 0.00 34.27 3.18
96 100 0.544357 ATCACCGTCCCAAGGAGACA 60.544 55.000 7.98 0.00 33.70 3.41
108 112 8.964476 ACATCAAGAAATCTTAATATCACCGT 57.036 30.769 0.00 0.00 34.28 4.83
116 120 7.609760 TGCACGTACATCAAGAAATCTTAAT 57.390 32.000 0.00 0.00 34.28 1.40
120 124 5.120830 GTCTTGCACGTACATCAAGAAATCT 59.879 40.000 17.54 0.00 45.09 2.40
122 126 4.754618 TGTCTTGCACGTACATCAAGAAAT 59.245 37.500 17.54 0.00 45.09 2.17
140 144 5.468072 GTCTCACACTGAATCACATTGTCTT 59.532 40.000 0.00 0.00 39.72 3.01
143 147 3.742882 CGTCTCACACTGAATCACATTGT 59.257 43.478 0.00 0.00 41.83 2.71
145 149 2.738846 GCGTCTCACACTGAATCACATT 59.261 45.455 0.00 0.00 0.00 2.71
147 151 1.341209 AGCGTCTCACACTGAATCACA 59.659 47.619 0.00 0.00 0.00 3.58
149 153 2.677199 GAAGCGTCTCACACTGAATCA 58.323 47.619 0.00 0.00 0.00 2.57
154 158 0.109086 ATCCGAAGCGTCTCACACTG 60.109 55.000 0.00 0.00 0.00 3.66
155 159 0.171455 GATCCGAAGCGTCTCACACT 59.829 55.000 0.00 0.00 0.00 3.55
158 162 1.927895 ATTGATCCGAAGCGTCTCAC 58.072 50.000 0.00 0.00 0.00 3.51
160 164 3.491267 CCTAAATTGATCCGAAGCGTCTC 59.509 47.826 0.00 0.00 0.00 3.36
161 165 3.458189 CCTAAATTGATCCGAAGCGTCT 58.542 45.455 0.00 0.00 0.00 4.18
162 166 2.544267 CCCTAAATTGATCCGAAGCGTC 59.456 50.000 0.00 0.00 0.00 5.19
163 167 2.561569 CCCTAAATTGATCCGAAGCGT 58.438 47.619 0.00 0.00 0.00 5.07
164 168 1.873591 CCCCTAAATTGATCCGAAGCG 59.126 52.381 0.00 0.00 0.00 4.68
165 169 2.932261 ACCCCTAAATTGATCCGAAGC 58.068 47.619 0.00 0.00 0.00 3.86
166 170 7.425606 CATTAAACCCCTAAATTGATCCGAAG 58.574 38.462 0.00 0.00 0.00 3.79
167 171 6.322712 CCATTAAACCCCTAAATTGATCCGAA 59.677 38.462 0.00 0.00 0.00 4.30
168 172 5.830991 CCATTAAACCCCTAAATTGATCCGA 59.169 40.000 0.00 0.00 0.00 4.55
169 173 5.508994 GCCATTAAACCCCTAAATTGATCCG 60.509 44.000 0.00 0.00 0.00 4.18
170 174 5.365314 TGCCATTAAACCCCTAAATTGATCC 59.635 40.000 0.00 0.00 0.00 3.36
181 185 1.136110 CCATCGTTGCCATTAAACCCC 59.864 52.381 0.00 0.00 0.00 4.95
182 186 1.470805 GCCATCGTTGCCATTAAACCC 60.471 52.381 0.00 0.00 0.00 4.11
185 189 1.135141 GCTGCCATCGTTGCCATTAAA 60.135 47.619 0.00 0.00 0.00 1.52
214 218 7.005902 TCATGCACATACCCATAAAGATTGAT 58.994 34.615 0.00 0.00 0.00 2.57
215 219 6.363882 TCATGCACATACCCATAAAGATTGA 58.636 36.000 0.00 0.00 0.00 2.57
216 220 6.638096 TCATGCACATACCCATAAAGATTG 57.362 37.500 0.00 0.00 0.00 2.67
217 221 7.013655 GTCTTCATGCACATACCCATAAAGATT 59.986 37.037 0.00 0.00 0.00 2.40
220 224 5.824624 AGTCTTCATGCACATACCCATAAAG 59.175 40.000 0.00 0.00 0.00 1.85
221 225 5.754782 AGTCTTCATGCACATACCCATAAA 58.245 37.500 0.00 0.00 0.00 1.40
228 232 5.641209 AGTCAAGAAGTCTTCATGCACATAC 59.359 40.000 14.97 6.87 33.11 2.39
229 233 5.640783 CAGTCAAGAAGTCTTCATGCACATA 59.359 40.000 14.97 0.00 33.11 2.29
247 251 5.048782 GCTTTACCATGTCAATGACAGTCAA 60.049 40.000 21.23 11.13 46.04 3.18
248 252 4.455533 GCTTTACCATGTCAATGACAGTCA 59.544 41.667 21.23 5.50 46.04 3.41
267 271 2.103263 CTCTATTACCAGAGCCGGCTTT 59.897 50.000 33.34 24.34 35.95 3.51
284 288 2.159156 ACGCGTCATTATTGCCACTCTA 60.159 45.455 5.58 0.00 0.00 2.43
285 289 1.290203 CGCGTCATTATTGCCACTCT 58.710 50.000 0.00 0.00 0.00 3.24
296 300 1.617755 CGAGCTGTTGACGCGTCATT 61.618 55.000 39.38 22.91 39.64 2.57
298 302 2.729491 CGAGCTGTTGACGCGTCA 60.729 61.111 36.40 36.40 37.91 4.35
302 306 0.708918 GTAGAACGAGCTGTTGACGC 59.291 55.000 0.00 0.00 42.09 5.19
308 312 0.733729 CCGCTAGTAGAACGAGCTGT 59.266 55.000 0.00 0.00 43.36 4.40
310 314 1.132643 CAACCGCTAGTAGAACGAGCT 59.867 52.381 0.00 0.00 43.36 4.09
320 324 2.223971 CCGAATATCCACAACCGCTAGT 60.224 50.000 0.00 0.00 0.00 2.57
321 325 2.223971 ACCGAATATCCACAACCGCTAG 60.224 50.000 0.00 0.00 0.00 3.42
329 333 1.574263 TGGACCACCGAATATCCACA 58.426 50.000 0.00 0.00 36.30 4.17
334 338 4.505566 CCAGATTCATGGACCACCGAATAT 60.506 45.833 17.11 13.07 43.57 1.28
335 339 3.181455 CCAGATTCATGGACCACCGAATA 60.181 47.826 17.11 0.00 43.57 1.75
337 341 1.065491 CCAGATTCATGGACCACCGAA 60.065 52.381 9.93 9.93 43.57 4.30
346 350 7.446319 TGCTAAGAATTACATCCAGATTCATGG 59.554 37.037 0.00 0.00 42.11 3.66
356 360 6.461509 CCCCAAACATGCTAAGAATTACATCC 60.462 42.308 0.00 0.00 0.00 3.51
371 375 2.618442 ACAAAAGCACCCCAAACATG 57.382 45.000 0.00 0.00 0.00 3.21
400 404 9.052365 AGGGATCTGGATCTATTATAAAGGTTC 57.948 37.037 9.96 0.00 37.92 3.62
402 406 8.997301 AAGGGATCTGGATCTATTATAAAGGT 57.003 34.615 9.96 0.00 37.92 3.50
453 457 4.584327 AGGTGGAAGTGCATAAAAACAC 57.416 40.909 0.00 0.00 37.05 3.32
454 458 5.278071 CGTAAGGTGGAAGTGCATAAAAACA 60.278 40.000 0.00 0.00 0.00 2.83
455 459 5.049267 TCGTAAGGTGGAAGTGCATAAAAAC 60.049 40.000 0.00 0.00 38.47 2.43
456 460 5.049267 GTCGTAAGGTGGAAGTGCATAAAAA 60.049 40.000 0.00 0.00 38.47 1.94
461 465 1.338769 GGTCGTAAGGTGGAAGTGCAT 60.339 52.381 0.00 0.00 38.47 3.96
469 473 3.069289 GTTTGTTAGGGTCGTAAGGTGG 58.931 50.000 0.00 0.00 38.47 4.61
470 474 3.999046 AGTTTGTTAGGGTCGTAAGGTG 58.001 45.455 0.00 0.00 38.47 4.00
474 478 3.554752 CCGGAAGTTTGTTAGGGTCGTAA 60.555 47.826 0.00 0.00 0.00 3.18
493 497 7.384387 GGATAGTAGCTTCTTGTTATTAACCGG 59.616 40.741 0.00 0.00 0.00 5.28
561 565 8.613060 TCGGAATGAAGTATATAGTCGTAACT 57.387 34.615 0.00 0.00 39.66 2.24
593 598 5.367945 AGGGTAGCCTTTTTATCGATCAA 57.632 39.130 7.93 0.00 0.00 2.57
595 600 5.699915 GGTTAGGGTAGCCTTTTTATCGATC 59.300 44.000 20.59 0.00 0.00 3.69
596 601 5.618236 GGTTAGGGTAGCCTTTTTATCGAT 58.382 41.667 20.59 2.16 0.00 3.59
597 602 4.441913 CGGTTAGGGTAGCCTTTTTATCGA 60.442 45.833 20.59 0.00 0.00 3.59
598 603 3.805971 CGGTTAGGGTAGCCTTTTTATCG 59.194 47.826 20.59 10.60 0.00 2.92
737 746 3.953712 TCTGAATAGACCTGCGTTTGA 57.046 42.857 0.00 0.00 0.00 2.69
936 948 2.016393 GCATTTAAAGGGCGAGGGGC 62.016 60.000 1.57 0.00 42.51 5.80
1017 1054 3.403968 GAGAGCGTTTCCTTTCTCCTTT 58.596 45.455 0.00 0.00 31.95 3.11
1037 1074 0.037975 GTGGTTTTACGAGGGAGCGA 60.038 55.000 0.00 0.00 34.83 4.93
1043 1080 2.036571 GGGCGGTGGTTTTACGAGG 61.037 63.158 0.00 0.00 0.00 4.63
1045 1082 2.357275 CGGGCGGTGGTTTTACGA 60.357 61.111 0.00 0.00 0.00 3.43
1047 1084 3.740397 GGCGGGCGGTGGTTTTAC 61.740 66.667 0.00 0.00 0.00 2.01
1063 1103 2.181021 CGACGGAAGGTCTTCGGG 59.819 66.667 18.15 9.80 43.79 5.14
1064 1104 2.181021 CCGACGGAAGGTCTTCGG 59.819 66.667 8.64 14.14 44.65 4.30
1065 1105 1.136984 CTCCGACGGAAGGTCTTCG 59.863 63.158 18.93 0.00 43.79 3.79
1066 1106 1.153804 GCTCCGACGGAAGGTCTTC 60.154 63.158 18.93 2.29 43.79 2.87
1175 1215 4.093952 TCCTTCGACGCGACGGAC 62.094 66.667 28.61 6.55 46.52 4.79
1721 1792 6.205658 ACCGAAGAAGAAGAAAAATGGAGAAG 59.794 38.462 0.00 0.00 0.00 2.85
1747 1827 2.251642 ACGGCGCTGAGAAAACACC 61.252 57.895 25.98 0.00 0.00 4.16
1762 1842 2.104572 ATCATCCCTCGCCATCACGG 62.105 60.000 0.00 0.00 38.11 4.94
1771 1851 1.600663 CGAAGGTCGAATCATCCCTCG 60.601 57.143 0.00 0.00 43.74 4.63
1816 1897 7.234166 GGGCAGTGGTAATAATTCCTACTACTA 59.766 40.741 12.61 0.00 37.64 1.82
1817 1898 6.042897 GGGCAGTGGTAATAATTCCTACTACT 59.957 42.308 9.00 9.00 39.58 2.57
1818 1899 6.228995 GGGCAGTGGTAATAATTCCTACTAC 58.771 44.000 0.00 5.64 31.61 2.73
1888 1977 2.753966 GCGTCCGCATGCATCAGTT 61.754 57.895 19.57 0.00 41.49 3.16
1889 1978 3.197790 GCGTCCGCATGCATCAGT 61.198 61.111 19.57 0.00 41.49 3.41
1890 1979 3.945434 GGCGTCCGCATGCATCAG 61.945 66.667 19.57 7.17 44.11 2.90
1891 1980 4.774503 TGGCGTCCGCATGCATCA 62.775 61.111 19.57 3.16 44.11 3.07
1892 1981 2.837883 AATGGCGTCCGCATGCATC 61.838 57.895 19.57 6.11 44.11 3.91
1980 2109 4.764679 TCAAAATCTTTCCGGTGACATG 57.235 40.909 0.00 0.00 0.00 3.21
2020 2149 5.689383 AATATGTAAAGGCCATAACTGCG 57.311 39.130 5.01 0.00 0.00 5.18
2049 2182 1.686325 AATGGCCGGCGAGATGTACT 61.686 55.000 22.54 0.00 0.00 2.73
2093 2235 7.888250 AGACTGTTTCTTTTTCCTGAAGAAT 57.112 32.000 0.70 0.00 41.33 2.40
2094 2236 7.393234 TCAAGACTGTTTCTTTTTCCTGAAGAA 59.607 33.333 0.00 0.00 42.37 2.52
2096 2238 6.969473 GTCAAGACTGTTTCTTTTTCCTGAAG 59.031 38.462 0.00 0.00 42.37 3.02
2097 2239 6.659242 AGTCAAGACTGTTTCTTTTTCCTGAA 59.341 34.615 1.20 0.00 42.37 3.02
2098 2240 6.180472 AGTCAAGACTGTTTCTTTTTCCTGA 58.820 36.000 1.20 0.00 42.37 3.86
2099 2241 6.442513 AGTCAAGACTGTTTCTTTTTCCTG 57.557 37.500 1.20 0.00 42.37 3.86
2100 2242 8.624776 CAATAGTCAAGACTGTTTCTTTTTCCT 58.375 33.333 12.77 0.00 42.37 3.36
2101 2243 7.862873 CCAATAGTCAAGACTGTTTCTTTTTCC 59.137 37.037 12.77 0.00 42.37 3.13
2102 2244 7.379797 GCCAATAGTCAAGACTGTTTCTTTTTC 59.620 37.037 12.77 0.00 42.37 2.29
2114 2256 1.348594 GCGCGCCAATAGTCAAGAC 59.651 57.895 23.24 0.00 0.00 3.01
2141 2283 1.432251 CGGGTACAGAGGCGTACTG 59.568 63.158 0.00 7.57 41.28 2.74
2281 2477 4.768583 ACGACCACTGGTAAAAACAGTAA 58.231 39.130 0.00 0.00 46.76 2.24
2296 2495 0.602638 TTGCCTCATGTGACGACCAC 60.603 55.000 0.00 0.00 45.88 4.16
2353 2573 3.054878 ACCGTACAAGCGTGAGTTTTAG 58.945 45.455 6.65 0.00 29.70 1.85
2360 2580 0.810426 TTTGCACCGTACAAGCGTGA 60.810 50.000 6.65 0.00 0.00 4.35
2364 2584 0.030101 TTGCTTTGCACCGTACAAGC 59.970 50.000 10.87 10.87 38.71 4.01
2426 2646 2.005560 GCCGTGTTTGTCCCTACTAGC 61.006 57.143 0.00 0.00 0.00 3.42
2428 2648 0.609662 GGCCGTGTTTGTCCCTACTA 59.390 55.000 0.00 0.00 0.00 1.82
2447 2667 0.259647 TGGCCTTCATGAATCTGGGG 59.740 55.000 8.96 7.44 0.00 4.96
2487 2707 4.752879 CCGGTGCAGGTACGGTGG 62.753 72.222 10.02 0.00 42.53 4.61
2547 2771 4.988716 TGACGAGGGGCACGACCT 62.989 66.667 0.00 0.00 42.18 3.85
2561 2785 0.320771 ATGCAGACCAACCGACTGAC 60.321 55.000 0.00 0.00 34.07 3.51
2660 2890 3.112709 GAGCCACGAACAGACGCC 61.113 66.667 0.00 0.00 36.70 5.68
2662 2892 0.597637 AACTGAGCCACGAACAGACG 60.598 55.000 0.00 0.00 35.85 4.18
2670 2900 1.798813 GGTAAACTGAACTGAGCCACG 59.201 52.381 0.00 0.00 0.00 4.94
2693 2923 9.086336 CACAACAGAAACACACAAGAATTAAAT 57.914 29.630 0.00 0.00 0.00 1.40
2698 2928 5.895636 TCACAACAGAAACACACAAGAAT 57.104 34.783 0.00 0.00 0.00 2.40
2728 2960 2.430367 GAGTTCCCCGGTTGCACT 59.570 61.111 0.00 0.00 0.00 4.40
2730 2962 3.234630 CTCGAGTTCCCCGGTTGCA 62.235 63.158 3.62 0.00 0.00 4.08
2731 2963 2.434359 CTCGAGTTCCCCGGTTGC 60.434 66.667 3.62 0.00 0.00 4.17
2741 2973 0.239347 CAACGACGTACCCTCGAGTT 59.761 55.000 12.31 0.00 36.45 3.01
2743 2975 1.078709 TACAACGACGTACCCTCGAG 58.921 55.000 5.13 5.13 35.08 4.04
2778 3010 4.529897 TCCTCTAATACTCCGTTGTGCTA 58.470 43.478 0.00 0.00 0.00 3.49
2779 3011 3.362706 TCCTCTAATACTCCGTTGTGCT 58.637 45.455 0.00 0.00 0.00 4.40
2780 3012 3.795623 TCCTCTAATACTCCGTTGTGC 57.204 47.619 0.00 0.00 0.00 4.57
2783 3015 7.513371 AGTAAGATCCTCTAATACTCCGTTG 57.487 40.000 0.00 0.00 0.00 4.10
2784 3016 8.536340 AAAGTAAGATCCTCTAATACTCCGTT 57.464 34.615 0.00 0.00 0.00 4.44
2785 3017 8.536340 AAAAGTAAGATCCTCTAATACTCCGT 57.464 34.615 0.00 0.00 0.00 4.69
2786 3018 9.250624 CAAAAAGTAAGATCCTCTAATACTCCG 57.749 37.037 0.00 0.00 0.00 4.63
2791 3023 9.595823 CCGTTCAAAAAGTAAGATCCTCTAATA 57.404 33.333 0.00 0.00 0.00 0.98
2792 3024 8.319146 TCCGTTCAAAAAGTAAGATCCTCTAAT 58.681 33.333 0.00 0.00 0.00 1.73
2793 3025 7.601508 GTCCGTTCAAAAAGTAAGATCCTCTAA 59.398 37.037 0.00 0.00 0.00 2.10
2794 3026 7.095270 GTCCGTTCAAAAAGTAAGATCCTCTA 58.905 38.462 0.00 0.00 0.00 2.43
2795 3027 5.932883 GTCCGTTCAAAAAGTAAGATCCTCT 59.067 40.000 0.00 0.00 0.00 3.69
2805 3037 2.607631 TCCTCGTCCGTTCAAAAAGT 57.392 45.000 0.00 0.00 0.00 2.66
2828 3060 8.877195 AGAAAGTAGGGTTTGTTAGTTAGATGA 58.123 33.333 0.00 0.00 0.00 2.92
2829 3061 9.503399 AAGAAAGTAGGGTTTGTTAGTTAGATG 57.497 33.333 0.00 0.00 0.00 2.90
2834 3066 9.690913 AAGTAAAGAAAGTAGGGTTTGTTAGTT 57.309 29.630 0.00 0.00 0.00 2.24
2835 3067 9.334947 GAAGTAAAGAAAGTAGGGTTTGTTAGT 57.665 33.333 0.00 0.00 0.00 2.24
2836 3068 9.333724 TGAAGTAAAGAAAGTAGGGTTTGTTAG 57.666 33.333 0.00 0.00 0.00 2.34
2837 3069 9.683870 TTGAAGTAAAGAAAGTAGGGTTTGTTA 57.316 29.630 0.00 0.00 0.00 2.41
2838 3070 8.584063 TTGAAGTAAAGAAAGTAGGGTTTGTT 57.416 30.769 0.00 0.00 0.00 2.83
2839 3071 8.584063 TTTGAAGTAAAGAAAGTAGGGTTTGT 57.416 30.769 0.00 0.00 0.00 2.83
2840 3072 9.863845 TTTTTGAAGTAAAGAAAGTAGGGTTTG 57.136 29.630 0.00 0.00 0.00 2.93
2863 3095 4.082245 CGTGGATAAGCAGGATTGGTTTTT 60.082 41.667 0.00 0.00 42.03 1.94
2864 3096 3.443681 CGTGGATAAGCAGGATTGGTTTT 59.556 43.478 0.00 0.00 42.03 2.43
2865 3097 3.016736 CGTGGATAAGCAGGATTGGTTT 58.983 45.455 0.00 0.00 42.03 3.27
2866 3098 2.238646 TCGTGGATAAGCAGGATTGGTT 59.761 45.455 0.00 0.00 46.13 3.67
2867 3099 1.837439 TCGTGGATAAGCAGGATTGGT 59.163 47.619 0.00 0.00 36.38 3.67
2868 3100 2.103094 TCTCGTGGATAAGCAGGATTGG 59.897 50.000 0.00 0.00 0.00 3.16
2869 3101 3.068732 TCTCTCGTGGATAAGCAGGATTG 59.931 47.826 0.00 0.00 0.00 2.67
2870 3102 3.300388 TCTCTCGTGGATAAGCAGGATT 58.700 45.455 0.00 0.00 0.00 3.01
2871 3103 2.950781 TCTCTCGTGGATAAGCAGGAT 58.049 47.619 0.00 0.00 0.00 3.24
2872 3104 2.437085 TCTCTCGTGGATAAGCAGGA 57.563 50.000 0.00 0.00 0.00 3.86
2873 3105 2.890311 AGATCTCTCGTGGATAAGCAGG 59.110 50.000 0.00 0.00 0.00 4.85
2874 3106 3.856638 GCAGATCTCTCGTGGATAAGCAG 60.857 52.174 0.00 0.00 0.00 4.24
2875 3107 2.035193 GCAGATCTCTCGTGGATAAGCA 59.965 50.000 0.00 0.00 0.00 3.91
2876 3108 2.671596 GCAGATCTCTCGTGGATAAGC 58.328 52.381 0.00 0.00 0.00 3.09
2877 3109 2.292016 ACGCAGATCTCTCGTGGATAAG 59.708 50.000 16.14 0.00 34.92 1.73
2878 3110 2.298610 ACGCAGATCTCTCGTGGATAA 58.701 47.619 16.14 0.00 34.92 1.75
2879 3111 1.968704 ACGCAGATCTCTCGTGGATA 58.031 50.000 16.14 0.00 34.92 2.59
2880 3112 1.604755 GTACGCAGATCTCTCGTGGAT 59.395 52.381 22.68 5.34 37.61 3.41
2881 3113 1.015109 GTACGCAGATCTCTCGTGGA 58.985 55.000 22.68 7.36 37.61 4.02
2882 3114 0.029567 GGTACGCAGATCTCTCGTGG 59.970 60.000 22.68 1.14 37.61 4.94
2883 3115 0.029567 GGGTACGCAGATCTCTCGTG 59.970 60.000 22.68 9.49 37.61 4.35
2884 3116 0.393944 TGGGTACGCAGATCTCTCGT 60.394 55.000 19.47 19.47 39.88 4.18
2885 3117 2.405143 TGGGTACGCAGATCTCTCG 58.595 57.895 8.80 11.20 0.00 4.04


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.