Multiple sequence alignment - TraesCS2B01G450700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G450700 chr2B 100.000 4682 0 0 1 4682 643686956 643682275 0.000000e+00 8647.0
1 TraesCS2B01G450700 chr2B 89.474 551 24 4 1 527 750337321 750336781 0.000000e+00 665.0
2 TraesCS2B01G450700 chr2D 94.146 3143 99 27 750 3825 539430508 539427384 0.000000e+00 4706.0
3 TraesCS2B01G450700 chr2D 90.143 629 36 8 3839 4443 539426439 539425813 0.000000e+00 795.0
4 TraesCS2B01G450700 chr2D 93.413 167 11 0 4430 4596 539424200 539424034 1.010000e-61 248.0
5 TraesCS2B01G450700 chr2A 93.680 3133 119 32 747 3823 683015054 683011945 0.000000e+00 4615.0
6 TraesCS2B01G450700 chr2A 91.581 582 22 6 3816 4377 683011328 683010754 0.000000e+00 778.0
7 TraesCS2B01G450700 chr2A 88.400 250 22 1 4440 4682 683010754 683010505 1.270000e-75 294.0
8 TraesCS2B01G450700 chr6A 95.817 526 20 2 1 526 66260018 66259495 0.000000e+00 848.0
9 TraesCS2B01G450700 chr6A 93.208 530 31 5 1 527 603633030 603633557 0.000000e+00 774.0
10 TraesCS2B01G450700 chr6A 100.000 28 0 0 2866 2893 518550976 518550949 8.000000e-03 52.8
11 TraesCS2B01G450700 chr3B 95.085 529 21 5 1 526 815184620 815184094 0.000000e+00 828.0
12 TraesCS2B01G450700 chr3B 92.235 528 31 5 1 526 406458912 406458393 0.000000e+00 739.0
13 TraesCS2B01G450700 chr3B 90.000 520 46 6 3 520 468918872 468918357 0.000000e+00 667.0
14 TraesCS2B01G450700 chr6B 91.902 531 32 10 1 526 67816978 67817502 0.000000e+00 732.0
15 TraesCS2B01G450700 chr6B 100.000 28 0 0 2866 2893 563134878 563134851 8.000000e-03 52.8
16 TraesCS2B01G450700 chr6B 100.000 28 0 0 2866 2893 563146699 563146672 8.000000e-03 52.8
17 TraesCS2B01G450700 chr4B 90.385 520 42 8 2 517 273247812 273248327 0.000000e+00 676.0
18 TraesCS2B01G450700 chr3D 88.846 520 50 8 2 517 484630516 484631031 2.380000e-177 632.0
19 TraesCS2B01G450700 chr1D 89.474 456 47 1 2 457 489983706 489983252 4.060000e-160 575.0
20 TraesCS2B01G450700 chr4A 80.537 745 70 46 1462 2174 641401276 641401977 1.940000e-138 503.0
21 TraesCS2B01G450700 chr4A 84.746 354 27 14 972 1320 641400869 641401200 3.490000e-86 329.0
22 TraesCS2B01G450700 chr4A 91.379 58 4 1 1374 1430 641401224 641401281 1.400000e-10 78.7
23 TraesCS2B01G450700 chr5D 82.480 508 54 21 1681 2174 530873543 530873057 3.370000e-111 412.0
24 TraesCS2B01G450700 chr5D 85.846 325 22 13 994 1318 530874122 530873822 1.620000e-84 324.0
25 TraesCS2B01G450700 chr5B 87.387 333 18 11 994 1323 670118217 670117906 1.240000e-95 361.0
26 TraesCS2B01G450700 chr5B 77.437 718 82 40 1482 2174 670117820 670117158 5.760000e-94 355.0
27 TraesCS2B01G450700 chr6D 78.075 374 56 15 850 1223 439114501 439114848 3.670000e-51 213.0
28 TraesCS2B01G450700 chr6D 97.297 37 1 0 2865 2901 29114027 29114063 3.910000e-06 63.9
29 TraesCS2B01G450700 chr6D 100.000 28 0 0 2866 2893 29114034 29114061 8.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G450700 chr2B 643682275 643686956 4681 True 8647.000000 8647 100.000000 1 4682 1 chr2B.!!$R1 4681
1 TraesCS2B01G450700 chr2B 750336781 750337321 540 True 665.000000 665 89.474000 1 527 1 chr2B.!!$R2 526
2 TraesCS2B01G450700 chr2D 539424034 539430508 6474 True 1916.333333 4706 92.567333 750 4596 3 chr2D.!!$R1 3846
3 TraesCS2B01G450700 chr2A 683010505 683015054 4549 True 1895.666667 4615 91.220333 747 4682 3 chr2A.!!$R1 3935
4 TraesCS2B01G450700 chr6A 66259495 66260018 523 True 848.000000 848 95.817000 1 526 1 chr6A.!!$R1 525
5 TraesCS2B01G450700 chr6A 603633030 603633557 527 False 774.000000 774 93.208000 1 527 1 chr6A.!!$F1 526
6 TraesCS2B01G450700 chr3B 815184094 815184620 526 True 828.000000 828 95.085000 1 526 1 chr3B.!!$R3 525
7 TraesCS2B01G450700 chr3B 406458393 406458912 519 True 739.000000 739 92.235000 1 526 1 chr3B.!!$R1 525
8 TraesCS2B01G450700 chr3B 468918357 468918872 515 True 667.000000 667 90.000000 3 520 1 chr3B.!!$R2 517
9 TraesCS2B01G450700 chr6B 67816978 67817502 524 False 732.000000 732 91.902000 1 526 1 chr6B.!!$F1 525
10 TraesCS2B01G450700 chr4B 273247812 273248327 515 False 676.000000 676 90.385000 2 517 1 chr4B.!!$F1 515
11 TraesCS2B01G450700 chr3D 484630516 484631031 515 False 632.000000 632 88.846000 2 517 1 chr3D.!!$F1 515
12 TraesCS2B01G450700 chr4A 641400869 641401977 1108 False 303.566667 503 85.554000 972 2174 3 chr4A.!!$F1 1202
13 TraesCS2B01G450700 chr5D 530873057 530874122 1065 True 368.000000 412 84.163000 994 2174 2 chr5D.!!$R1 1180
14 TraesCS2B01G450700 chr5B 670117158 670118217 1059 True 358.000000 361 82.412000 994 2174 2 chr5B.!!$R1 1180

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
554 581 0.026803 GAAGCGCGATGGTTGTGATC 59.973 55.0 12.10 0.00 38.70 2.92 F
558 585 0.095245 CGCGATGGTTGTGATCACAC 59.905 55.0 27.88 20.74 46.09 3.82 F
793 820 0.179100 CCAGAATCAGACGCCGACAT 60.179 55.0 0.00 0.00 0.00 3.06 F
1130 1197 0.514255 CTCCACAACTACGACGACGA 59.486 55.0 15.32 0.00 42.66 4.20 F
2868 3069 0.250038 ATAAGCGCACGAGGCATGAT 60.250 50.0 11.47 0.00 45.17 2.45 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1487 1607 1.146774 TCAAAATTCTGTCCCTGGCCA 59.853 47.619 4.71 4.71 0.00 5.36 R
2187 2388 1.473257 GCCTCAGAATCATGGCGTGTA 60.473 52.381 6.60 0.00 35.79 2.90 R
2374 2575 2.094803 AGTCGCTCTCTGAATCACTGTG 60.095 50.000 0.17 0.17 0.00 3.66 R
3072 3273 1.478105 GCCCTTTTAGCATGGTTCTGG 59.522 52.381 1.12 0.92 0.00 3.86 R
4657 7596 0.320421 TCCAGTTTGCTAGTCGTGCC 60.320 55.000 0.00 0.00 0.00 5.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
288 313 6.949715 ACATCATGGCAACTTTTAATCCAAT 58.050 32.000 0.00 0.00 37.61 3.16
527 554 2.434359 GCAGTTAGCGCGACCCTT 60.434 61.111 12.10 0.00 0.00 3.95
528 555 2.740714 GCAGTTAGCGCGACCCTTG 61.741 63.158 12.10 2.79 0.00 3.61
529 556 1.080093 CAGTTAGCGCGACCCTTGA 60.080 57.895 12.10 0.00 0.00 3.02
530 557 0.460284 CAGTTAGCGCGACCCTTGAT 60.460 55.000 12.10 0.00 0.00 2.57
531 558 1.108776 AGTTAGCGCGACCCTTGATA 58.891 50.000 12.10 0.00 0.00 2.15
532 559 1.687123 AGTTAGCGCGACCCTTGATAT 59.313 47.619 12.10 0.00 0.00 1.63
533 560 2.102588 AGTTAGCGCGACCCTTGATATT 59.897 45.455 12.10 0.00 0.00 1.28
534 561 2.870411 GTTAGCGCGACCCTTGATATTT 59.130 45.455 12.10 0.00 0.00 1.40
535 562 1.299541 AGCGCGACCCTTGATATTTG 58.700 50.000 12.10 0.00 0.00 2.32
536 563 1.134521 AGCGCGACCCTTGATATTTGA 60.135 47.619 12.10 0.00 0.00 2.69
537 564 1.668751 GCGCGACCCTTGATATTTGAA 59.331 47.619 12.10 0.00 0.00 2.69
538 565 2.286418 GCGCGACCCTTGATATTTGAAG 60.286 50.000 12.10 0.00 0.00 3.02
539 566 2.286418 CGCGACCCTTGATATTTGAAGC 60.286 50.000 0.00 0.00 0.00 3.86
540 567 2.286418 GCGACCCTTGATATTTGAAGCG 60.286 50.000 0.00 0.00 0.00 4.68
541 568 2.286418 CGACCCTTGATATTTGAAGCGC 60.286 50.000 0.00 0.00 0.00 5.92
542 569 1.670811 ACCCTTGATATTTGAAGCGCG 59.329 47.619 0.00 0.00 0.00 6.86
543 570 1.939934 CCCTTGATATTTGAAGCGCGA 59.060 47.619 12.10 0.00 0.00 5.87
544 571 2.549754 CCCTTGATATTTGAAGCGCGAT 59.450 45.455 12.10 0.00 0.00 4.58
545 572 3.548587 CCTTGATATTTGAAGCGCGATG 58.451 45.455 12.10 0.00 0.00 3.84
546 573 3.548587 CTTGATATTTGAAGCGCGATGG 58.451 45.455 12.10 0.00 0.00 3.51
547 574 2.560504 TGATATTTGAAGCGCGATGGT 58.439 42.857 12.10 0.00 0.00 3.55
548 575 2.942376 TGATATTTGAAGCGCGATGGTT 59.058 40.909 12.10 0.00 42.02 3.67
549 576 2.823196 TATTTGAAGCGCGATGGTTG 57.177 45.000 12.10 0.00 38.70 3.77
550 577 0.881118 ATTTGAAGCGCGATGGTTGT 59.119 45.000 12.10 0.00 38.70 3.32
551 578 0.040514 TTTGAAGCGCGATGGTTGTG 60.041 50.000 12.10 0.00 38.70 3.33
552 579 0.882484 TTGAAGCGCGATGGTTGTGA 60.882 50.000 12.10 0.00 38.70 3.58
553 580 0.673333 TGAAGCGCGATGGTTGTGAT 60.673 50.000 12.10 0.00 38.70 3.06
554 581 0.026803 GAAGCGCGATGGTTGTGATC 59.973 55.000 12.10 0.00 38.70 2.92
555 582 0.673333 AAGCGCGATGGTTGTGATCA 60.673 50.000 12.10 0.00 36.80 2.92
556 583 1.060937 GCGCGATGGTTGTGATCAC 59.939 57.895 19.27 19.27 0.00 3.06
557 584 1.634757 GCGCGATGGTTGTGATCACA 61.635 55.000 24.56 24.56 39.98 3.58
558 585 0.095245 CGCGATGGTTGTGATCACAC 59.905 55.000 27.88 20.74 46.09 3.82
559 586 0.447801 GCGATGGTTGTGATCACACC 59.552 55.000 27.88 27.45 45.40 4.16
560 587 1.945819 GCGATGGTTGTGATCACACCT 60.946 52.381 30.51 22.07 45.40 4.00
561 588 2.002586 CGATGGTTGTGATCACACCTC 58.997 52.381 30.51 25.27 45.40 3.85
562 589 2.002586 GATGGTTGTGATCACACCTCG 58.997 52.381 30.51 0.00 45.40 4.63
563 590 1.044611 TGGTTGTGATCACACCTCGA 58.955 50.000 30.51 19.56 45.40 4.04
564 591 1.414550 TGGTTGTGATCACACCTCGAA 59.585 47.619 30.51 16.55 45.40 3.71
565 592 1.798813 GGTTGTGATCACACCTCGAAC 59.201 52.381 27.88 20.49 45.40 3.95
566 593 1.798813 GTTGTGATCACACCTCGAACC 59.201 52.381 27.88 5.33 45.40 3.62
567 594 1.044611 TGTGATCACACCTCGAACCA 58.955 50.000 24.56 0.00 45.40 3.67
568 595 1.414550 TGTGATCACACCTCGAACCAA 59.585 47.619 24.56 0.00 45.40 3.67
569 596 2.158885 TGTGATCACACCTCGAACCAAA 60.159 45.455 24.56 0.00 45.40 3.28
570 597 2.875933 GTGATCACACCTCGAACCAAAA 59.124 45.455 21.07 0.00 40.74 2.44
571 598 3.502211 GTGATCACACCTCGAACCAAAAT 59.498 43.478 21.07 0.00 40.74 1.82
572 599 3.501828 TGATCACACCTCGAACCAAAATG 59.498 43.478 0.00 0.00 0.00 2.32
573 600 2.925724 TCACACCTCGAACCAAAATGT 58.074 42.857 0.00 0.00 0.00 2.71
574 601 3.283751 TCACACCTCGAACCAAAATGTT 58.716 40.909 0.00 0.00 0.00 2.71
575 602 3.697045 TCACACCTCGAACCAAAATGTTT 59.303 39.130 0.00 0.00 0.00 2.83
576 603 4.041723 CACACCTCGAACCAAAATGTTTC 58.958 43.478 0.00 0.00 0.00 2.78
577 604 3.951680 ACACCTCGAACCAAAATGTTTCT 59.048 39.130 0.00 0.00 0.00 2.52
578 605 4.401202 ACACCTCGAACCAAAATGTTTCTT 59.599 37.500 0.00 0.00 0.00 2.52
579 606 5.105513 ACACCTCGAACCAAAATGTTTCTTT 60.106 36.000 0.00 0.00 0.00 2.52
580 607 5.810074 CACCTCGAACCAAAATGTTTCTTTT 59.190 36.000 0.00 0.00 0.00 2.27
581 608 5.810074 ACCTCGAACCAAAATGTTTCTTTTG 59.190 36.000 2.99 2.99 42.89 2.44
582 609 6.039616 CCTCGAACCAAAATGTTTCTTTTGA 58.960 36.000 10.08 0.00 44.97 2.69
583 610 6.198966 CCTCGAACCAAAATGTTTCTTTTGAG 59.801 38.462 10.08 4.36 44.97 3.02
584 611 6.626302 TCGAACCAAAATGTTTCTTTTGAGT 58.374 32.000 10.08 4.86 44.97 3.41
585 612 7.093992 TCGAACCAAAATGTTTCTTTTGAGTT 58.906 30.769 10.08 11.20 44.97 3.01
586 613 7.274686 TCGAACCAAAATGTTTCTTTTGAGTTC 59.725 33.333 19.75 19.75 44.97 3.01
587 614 7.464045 CGAACCAAAATGTTTCTTTTGAGTTCC 60.464 37.037 21.49 13.13 44.97 3.62
588 615 6.706295 ACCAAAATGTTTCTTTTGAGTTCCA 58.294 32.000 10.08 0.00 44.97 3.53
589 616 7.164803 ACCAAAATGTTTCTTTTGAGTTCCAA 58.835 30.769 10.08 0.00 44.97 3.53
590 617 7.663493 ACCAAAATGTTTCTTTTGAGTTCCAAA 59.337 29.630 10.08 0.00 44.97 3.28
603 630 6.660887 TGAGTTCCAAAATTGAACAAAAGC 57.339 33.333 9.15 0.00 0.00 3.51
604 631 6.405538 TGAGTTCCAAAATTGAACAAAAGCT 58.594 32.000 9.15 0.00 0.00 3.74
605 632 7.551585 TGAGTTCCAAAATTGAACAAAAGCTA 58.448 30.769 9.15 0.00 0.00 3.32
606 633 8.203485 TGAGTTCCAAAATTGAACAAAAGCTAT 58.797 29.630 9.15 0.00 0.00 2.97
607 634 8.962884 AGTTCCAAAATTGAACAAAAGCTATT 57.037 26.923 9.15 0.00 0.00 1.73
608 635 9.045223 AGTTCCAAAATTGAACAAAAGCTATTC 57.955 29.630 9.15 0.00 0.00 1.75
609 636 9.045223 GTTCCAAAATTGAACAAAAGCTATTCT 57.955 29.630 0.00 0.00 0.00 2.40
611 638 9.691362 TCCAAAATTGAACAAAAGCTATTCTAC 57.309 29.630 0.00 0.00 0.00 2.59
612 639 9.474920 CCAAAATTGAACAAAAGCTATTCTACA 57.525 29.630 0.00 0.00 0.00 2.74
617 644 9.683069 ATTGAACAAAAGCTATTCTACAAGTTG 57.317 29.630 0.00 0.00 0.00 3.16
618 645 8.445275 TGAACAAAAGCTATTCTACAAGTTGA 57.555 30.769 10.54 0.00 0.00 3.18
619 646 8.342634 TGAACAAAAGCTATTCTACAAGTTGAC 58.657 33.333 10.54 0.00 0.00 3.18
620 647 8.451908 AACAAAAGCTATTCTACAAGTTGACT 57.548 30.769 10.54 0.00 0.00 3.41
621 648 8.089115 ACAAAAGCTATTCTACAAGTTGACTC 57.911 34.615 10.54 0.00 0.00 3.36
622 649 6.952935 AAAGCTATTCTACAAGTTGACTCG 57.047 37.500 10.54 0.00 0.00 4.18
623 650 5.646577 AGCTATTCTACAAGTTGACTCGT 57.353 39.130 10.54 0.00 0.00 4.18
624 651 6.026947 AGCTATTCTACAAGTTGACTCGTT 57.973 37.500 10.54 0.00 0.00 3.85
625 652 6.456501 AGCTATTCTACAAGTTGACTCGTTT 58.543 36.000 10.54 0.00 0.00 3.60
626 653 6.929606 AGCTATTCTACAAGTTGACTCGTTTT 59.070 34.615 10.54 0.00 0.00 2.43
627 654 8.086522 AGCTATTCTACAAGTTGACTCGTTTTA 58.913 33.333 10.54 0.00 0.00 1.52
628 655 8.373992 GCTATTCTACAAGTTGACTCGTTTTAG 58.626 37.037 10.54 0.00 0.00 1.85
629 656 7.653767 ATTCTACAAGTTGACTCGTTTTAGG 57.346 36.000 10.54 0.00 0.00 2.69
630 657 6.152932 TCTACAAGTTGACTCGTTTTAGGT 57.847 37.500 10.54 0.00 0.00 3.08
631 658 6.211515 TCTACAAGTTGACTCGTTTTAGGTC 58.788 40.000 10.54 0.00 0.00 3.85
632 659 5.019785 ACAAGTTGACTCGTTTTAGGTCT 57.980 39.130 10.54 0.00 0.00 3.85
633 660 4.809426 ACAAGTTGACTCGTTTTAGGTCTG 59.191 41.667 10.54 0.00 0.00 3.51
634 661 4.931661 AGTTGACTCGTTTTAGGTCTGA 57.068 40.909 0.00 0.00 0.00 3.27
635 662 5.272283 AGTTGACTCGTTTTAGGTCTGAA 57.728 39.130 0.00 0.00 0.00 3.02
636 663 5.667466 AGTTGACTCGTTTTAGGTCTGAAA 58.333 37.500 0.00 0.00 0.00 2.69
637 664 5.753921 AGTTGACTCGTTTTAGGTCTGAAAG 59.246 40.000 0.00 0.00 0.00 2.62
638 665 5.524971 TGACTCGTTTTAGGTCTGAAAGA 57.475 39.130 0.00 0.00 43.69 2.52
647 674 3.676605 TCTGAAAGACGCGGGCGA 61.677 61.111 20.98 0.00 38.67 5.54
648 675 2.509336 CTGAAAGACGCGGGCGAT 60.509 61.111 20.98 4.87 43.21 4.58
649 676 2.047655 TGAAAGACGCGGGCGATT 60.048 55.556 20.98 10.89 42.83 3.34
650 677 1.635663 CTGAAAGACGCGGGCGATTT 61.636 55.000 20.98 18.20 43.21 2.17
651 678 1.226018 GAAAGACGCGGGCGATTTG 60.226 57.895 20.98 0.00 42.83 2.32
652 679 1.632046 GAAAGACGCGGGCGATTTGA 61.632 55.000 20.98 0.00 42.83 2.69
653 680 1.231958 AAAGACGCGGGCGATTTGAA 61.232 50.000 20.98 0.00 42.83 2.69
654 681 1.635663 AAGACGCGGGCGATTTGAAG 61.636 55.000 20.98 0.00 42.83 3.02
655 682 3.095898 GACGCGGGCGATTTGAAGG 62.096 63.158 20.98 0.00 42.83 3.46
656 683 3.124921 CGCGGGCGATTTGAAGGT 61.125 61.111 7.38 0.00 42.83 3.50
657 684 2.686816 CGCGGGCGATTTGAAGGTT 61.687 57.895 7.38 0.00 42.83 3.50
658 685 1.154035 GCGGGCGATTTGAAGGTTG 60.154 57.895 0.00 0.00 0.00 3.77
659 686 1.582610 GCGGGCGATTTGAAGGTTGA 61.583 55.000 0.00 0.00 0.00 3.18
660 687 1.094785 CGGGCGATTTGAAGGTTGAT 58.905 50.000 0.00 0.00 0.00 2.57
661 688 1.202177 CGGGCGATTTGAAGGTTGATG 60.202 52.381 0.00 0.00 0.00 3.07
662 689 1.818674 GGGCGATTTGAAGGTTGATGT 59.181 47.619 0.00 0.00 0.00 3.06
663 690 2.231235 GGGCGATTTGAAGGTTGATGTT 59.769 45.455 0.00 0.00 0.00 2.71
664 691 3.442273 GGGCGATTTGAAGGTTGATGTTA 59.558 43.478 0.00 0.00 0.00 2.41
665 692 4.082463 GGGCGATTTGAAGGTTGATGTTAA 60.082 41.667 0.00 0.00 0.00 2.01
666 693 5.465935 GGCGATTTGAAGGTTGATGTTAAA 58.534 37.500 0.00 0.00 0.00 1.52
667 694 5.344933 GGCGATTTGAAGGTTGATGTTAAAC 59.655 40.000 0.00 0.00 0.00 2.01
668 695 5.918011 GCGATTTGAAGGTTGATGTTAAACA 59.082 36.000 0.00 0.00 0.00 2.83
669 696 6.586082 GCGATTTGAAGGTTGATGTTAAACAT 59.414 34.615 0.00 0.00 42.43 2.71
670 697 7.410728 GCGATTTGAAGGTTGATGTTAAACATG 60.411 37.037 0.00 0.00 39.27 3.21
671 698 7.594758 CGATTTGAAGGTTGATGTTAAACATGT 59.405 33.333 0.00 0.00 39.27 3.21
672 699 8.816640 ATTTGAAGGTTGATGTTAAACATGTC 57.183 30.769 0.00 0.00 39.27 3.06
673 700 6.325919 TGAAGGTTGATGTTAAACATGTCC 57.674 37.500 0.00 0.00 39.27 4.02
674 701 6.068010 TGAAGGTTGATGTTAAACATGTCCT 58.932 36.000 0.00 0.00 39.27 3.85
675 702 6.549364 TGAAGGTTGATGTTAAACATGTCCTT 59.451 34.615 0.00 3.14 39.27 3.36
676 703 7.721842 TGAAGGTTGATGTTAAACATGTCCTTA 59.278 33.333 0.00 0.00 39.27 2.69
677 704 7.687941 AGGTTGATGTTAAACATGTCCTTAG 57.312 36.000 0.00 0.00 39.27 2.18
678 705 6.659242 AGGTTGATGTTAAACATGTCCTTAGG 59.341 38.462 0.00 0.00 39.27 2.69
679 706 6.433093 GGTTGATGTTAAACATGTCCTTAGGT 59.567 38.462 0.00 0.00 39.27 3.08
680 707 7.361799 GGTTGATGTTAAACATGTCCTTAGGTC 60.362 40.741 0.00 0.00 39.27 3.85
681 708 7.016153 TGATGTTAAACATGTCCTTAGGTCT 57.984 36.000 0.00 0.00 39.27 3.85
682 709 7.458397 TGATGTTAAACATGTCCTTAGGTCTT 58.542 34.615 0.00 0.00 39.27 3.01
683 710 7.390440 TGATGTTAAACATGTCCTTAGGTCTTG 59.610 37.037 0.00 9.15 39.27 3.02
684 711 6.833041 TGTTAAACATGTCCTTAGGTCTTGA 58.167 36.000 15.64 0.00 0.00 3.02
685 712 7.284074 TGTTAAACATGTCCTTAGGTCTTGAA 58.716 34.615 15.64 0.88 0.00 2.69
686 713 7.444183 TGTTAAACATGTCCTTAGGTCTTGAAG 59.556 37.037 15.64 0.00 0.00 3.02
687 714 3.944087 ACATGTCCTTAGGTCTTGAAGC 58.056 45.455 15.64 0.00 0.00 3.86
688 715 3.584848 ACATGTCCTTAGGTCTTGAAGCT 59.415 43.478 15.64 0.00 39.57 3.74
689 716 4.777896 ACATGTCCTTAGGTCTTGAAGCTA 59.222 41.667 15.64 0.00 36.91 3.32
690 717 5.426833 ACATGTCCTTAGGTCTTGAAGCTAT 59.573 40.000 15.64 0.00 37.78 2.97
691 718 5.599999 TGTCCTTAGGTCTTGAAGCTATC 57.400 43.478 0.00 0.00 37.78 2.08
692 719 5.273208 TGTCCTTAGGTCTTGAAGCTATCT 58.727 41.667 0.00 0.00 37.78 1.98
693 720 5.721960 TGTCCTTAGGTCTTGAAGCTATCTT 59.278 40.000 0.00 0.00 37.78 2.40
694 721 6.213600 TGTCCTTAGGTCTTGAAGCTATCTTT 59.786 38.462 0.00 0.00 37.78 2.52
695 722 7.399191 TGTCCTTAGGTCTTGAAGCTATCTTTA 59.601 37.037 0.00 0.00 37.78 1.85
696 723 8.425703 GTCCTTAGGTCTTGAAGCTATCTTTAT 58.574 37.037 0.00 0.00 37.78 1.40
697 724 8.993424 TCCTTAGGTCTTGAAGCTATCTTTATT 58.007 33.333 0.00 0.00 37.78 1.40
698 725 9.050601 CCTTAGGTCTTGAAGCTATCTTTATTG 57.949 37.037 0.00 0.00 37.78 1.90
699 726 8.964476 TTAGGTCTTGAAGCTATCTTTATTGG 57.036 34.615 0.00 0.00 37.78 3.16
700 727 6.360618 AGGTCTTGAAGCTATCTTTATTGGG 58.639 40.000 0.00 0.00 32.74 4.12
701 728 5.009110 GGTCTTGAAGCTATCTTTATTGGGC 59.991 44.000 0.00 0.00 31.48 5.36
702 729 5.825151 GTCTTGAAGCTATCTTTATTGGGCT 59.175 40.000 0.00 0.00 31.48 5.19
703 730 6.319911 GTCTTGAAGCTATCTTTATTGGGCTT 59.680 38.462 0.00 0.00 41.73 4.35
704 731 6.891908 TCTTGAAGCTATCTTTATTGGGCTTT 59.108 34.615 0.00 0.00 39.61 3.51
705 732 8.052748 TCTTGAAGCTATCTTTATTGGGCTTTA 58.947 33.333 0.00 0.00 39.61 1.85
706 733 8.766994 TTGAAGCTATCTTTATTGGGCTTTAT 57.233 30.769 0.00 0.00 39.61 1.40
707 734 8.169977 TGAAGCTATCTTTATTGGGCTTTATG 57.830 34.615 0.00 0.00 39.61 1.90
708 735 7.998383 TGAAGCTATCTTTATTGGGCTTTATGA 59.002 33.333 0.00 0.00 39.61 2.15
709 736 8.766994 AAGCTATCTTTATTGGGCTTTATGAA 57.233 30.769 0.00 0.00 36.78 2.57
710 737 8.171164 AGCTATCTTTATTGGGCTTTATGAAC 57.829 34.615 0.00 0.00 0.00 3.18
711 738 7.779798 AGCTATCTTTATTGGGCTTTATGAACA 59.220 33.333 0.00 0.00 0.00 3.18
712 739 8.579863 GCTATCTTTATTGGGCTTTATGAACAT 58.420 33.333 0.00 0.00 0.00 2.71
733 760 2.950877 TTTTTCCAGTTGCAACGCG 58.049 47.368 23.21 17.80 0.00 6.01
734 761 1.142778 TTTTTCCAGTTGCAACGCGC 61.143 50.000 23.21 0.00 42.89 6.86
735 762 3.798639 TTTCCAGTTGCAACGCGCG 62.799 57.895 30.96 30.96 46.97 6.86
740 767 4.383602 GTTGCAACGCGCGGACAT 62.384 61.111 35.22 14.41 46.97 3.06
741 768 2.738904 TTGCAACGCGCGGACATA 60.739 55.556 35.22 13.49 46.97 2.29
742 769 2.103647 TTGCAACGCGCGGACATAT 61.104 52.632 35.22 8.98 46.97 1.78
743 770 0.806492 TTGCAACGCGCGGACATATA 60.806 50.000 35.22 10.98 46.97 0.86
744 771 0.598942 TGCAACGCGCGGACATATAT 60.599 50.000 35.22 7.19 46.97 0.86
745 772 0.179250 GCAACGCGCGGACATATATG 60.179 55.000 35.22 18.37 0.00 1.78
746 773 0.179250 CAACGCGCGGACATATATGC 60.179 55.000 35.22 5.71 0.00 3.14
747 774 0.319555 AACGCGCGGACATATATGCT 60.320 50.000 35.22 4.80 0.00 3.79
748 775 0.524414 ACGCGCGGACATATATGCTA 59.476 50.000 35.22 0.00 0.00 3.49
786 813 0.249073 CGGCCTACCAGAATCAGACG 60.249 60.000 0.00 0.00 34.57 4.18
793 820 0.179100 CCAGAATCAGACGCCGACAT 60.179 55.000 0.00 0.00 0.00 3.06
916 976 3.737172 CCCCGCAGAAAAGCCACG 61.737 66.667 0.00 0.00 0.00 4.94
917 977 2.668212 CCCGCAGAAAAGCCACGA 60.668 61.111 0.00 0.00 0.00 4.35
918 978 2.258013 CCCGCAGAAAAGCCACGAA 61.258 57.895 0.00 0.00 0.00 3.85
919 979 1.082104 CCGCAGAAAAGCCACGAAC 60.082 57.895 0.00 0.00 0.00 3.95
920 980 1.082104 CGCAGAAAAGCCACGAACC 60.082 57.895 0.00 0.00 0.00 3.62
922 982 1.452145 GCAGAAAAGCCACGAACCCA 61.452 55.000 0.00 0.00 0.00 4.51
923 983 1.028905 CAGAAAAGCCACGAACCCAA 58.971 50.000 0.00 0.00 0.00 4.12
924 984 1.613437 CAGAAAAGCCACGAACCCAAT 59.387 47.619 0.00 0.00 0.00 3.16
950 1012 3.475192 AACCTAGGGTTTCGCCGT 58.525 55.556 14.81 0.00 44.33 5.68
1130 1197 0.514255 CTCCACAACTACGACGACGA 59.486 55.000 15.32 0.00 42.66 4.20
1131 1198 0.943673 TCCACAACTACGACGACGAA 59.056 50.000 15.32 0.00 42.66 3.85
1454 1544 4.141937 TGTGTTATCCCTGTATCTGTCAGC 60.142 45.833 0.00 0.00 0.00 4.26
1457 1547 5.897250 TGTTATCCCTGTATCTGTCAGCTAA 59.103 40.000 0.00 0.00 0.00 3.09
1458 1548 6.554982 TGTTATCCCTGTATCTGTCAGCTAAT 59.445 38.462 0.00 0.00 0.00 1.73
1459 1549 7.728532 TGTTATCCCTGTATCTGTCAGCTAATA 59.271 37.037 0.00 0.00 0.00 0.98
1460 1550 6.597832 ATCCCTGTATCTGTCAGCTAATAC 57.402 41.667 0.00 0.00 0.00 1.89
1464 1583 7.125811 TCCCTGTATCTGTCAGCTAATACTTTT 59.874 37.037 10.10 0.00 0.00 2.27
1487 1607 1.507140 TGTGGAACTGTTGGAGAGGT 58.493 50.000 0.00 0.00 38.04 3.85
1501 1621 2.121963 AGGTGGCCAGGGACAGAA 60.122 61.111 5.11 0.00 31.40 3.02
1525 1654 8.604640 AATTTTGACAATACATTCATGTGCAA 57.395 26.923 2.50 0.00 41.89 4.08
1530 1659 9.702494 TTGACAATACATTCATGTGCAATTTTA 57.298 25.926 2.50 0.00 41.89 1.52
1539 1668 9.791820 CATTCATGTGCAATTTTAAGTCTGATA 57.208 29.630 0.00 0.00 0.00 2.15
1688 1854 5.648526 TCCTGCTTGTGTTAAGTGTTTTGTA 59.351 36.000 0.00 0.00 0.00 2.41
1689 1855 6.320164 TCCTGCTTGTGTTAAGTGTTTTGTAT 59.680 34.615 0.00 0.00 0.00 2.29
1733 1907 5.527582 AGTTGTTCTGTTGGTAGATTGTCAC 59.472 40.000 0.00 0.00 0.00 3.67
1754 1928 5.985530 TCACTAGTTTCTGACAAGACATGTG 59.014 40.000 1.15 0.00 44.12 3.21
2187 2388 2.174685 AGGCAAAACAGGGAAAAGGT 57.825 45.000 0.00 0.00 0.00 3.50
2374 2575 2.099143 TCGGAGAGTGATGTCTCGC 58.901 57.895 0.00 0.00 43.54 5.03
2841 3042 6.891361 AGAAGGAAGGGAAGACTAGTAGTAAC 59.109 42.308 1.88 0.00 0.00 2.50
2867 3068 0.875908 GATAAGCGCACGAGGCATGA 60.876 55.000 11.47 0.00 45.17 3.07
2868 3069 0.250038 ATAAGCGCACGAGGCATGAT 60.250 50.000 11.47 0.00 45.17 2.45
2869 3070 0.461870 TAAGCGCACGAGGCATGATT 60.462 50.000 11.47 0.00 45.17 2.57
2870 3071 1.709147 AAGCGCACGAGGCATGATTC 61.709 55.000 11.47 0.00 45.17 2.52
2871 3072 2.176273 GCGCACGAGGCATGATTCT 61.176 57.895 0.30 0.00 45.17 2.40
2872 3073 1.640069 CGCACGAGGCATGATTCTG 59.360 57.895 0.00 0.00 45.17 3.02
2996 3197 3.057736 AGTTCATTTTACAGCAGCAGCAG 60.058 43.478 3.17 0.00 45.49 4.24
2997 3198 1.200716 TCATTTTACAGCAGCAGCAGC 59.799 47.619 3.17 0.46 45.49 5.25
2998 3199 1.068125 CATTTTACAGCAGCAGCAGCA 60.068 47.619 12.92 0.00 45.49 4.41
3060 3261 5.942236 CAGGAAATCTGACAGAGGATTGAAA 59.058 40.000 11.52 0.00 46.18 2.69
3072 3273 6.044682 CAGAGGATTGAAAAATGGTAATGGC 58.955 40.000 0.00 0.00 0.00 4.40
3122 3323 6.468543 ACAAGAATGAGTTAGAGGAAAGGAC 58.531 40.000 0.00 0.00 0.00 3.85
3162 3363 5.097234 AGAAGGAAGGAAGAGAGAATGGAA 58.903 41.667 0.00 0.00 0.00 3.53
3186 3387 4.644685 CAGGAGAAACAAAAACAGAGGGAA 59.355 41.667 0.00 0.00 0.00 3.97
3210 3411 5.604650 AGAAGAGAGGAAAGAGTTGGAGAAA 59.395 40.000 0.00 0.00 0.00 2.52
3267 3483 0.715987 AGGGAGAGAGGAAGGAGCTT 59.284 55.000 0.00 0.00 0.00 3.74
3429 3645 4.380531 TCAGCGATGATGAAAATAGGGAC 58.619 43.478 0.00 0.00 0.00 4.46
3430 3646 4.101585 TCAGCGATGATGAAAATAGGGACT 59.898 41.667 0.00 0.00 46.37 3.85
3431 3647 4.212847 CAGCGATGATGAAAATAGGGACTG 59.787 45.833 0.00 0.00 41.52 3.51
3528 3747 2.304470 TGATGATGAAAACAGGGACCGA 59.696 45.455 0.00 0.00 0.00 4.69
3682 3901 0.534412 AGACAGGAGGCATCGTTGAG 59.466 55.000 8.25 0.00 0.00 3.02
3731 3950 5.687285 GTCTCAGTTTTTACCATTGCTTGTG 59.313 40.000 0.00 0.00 0.00 3.33
3748 3967 1.948834 TGTGAGTTTGCATCACTGTGG 59.051 47.619 17.40 0.00 45.87 4.17
3764 3983 3.131396 CTGTGGAGGAGTAAACACACAC 58.869 50.000 0.00 0.00 38.76 3.82
3798 4017 8.860128 GTTTGTGTTAATGCTAATCTTTTAGGC 58.140 33.333 0.00 0.00 36.18 3.93
3803 4022 5.500645 AATGCTAATCTTTTAGGCGGTTC 57.499 39.130 0.00 0.00 36.18 3.62
3807 4026 2.754946 ATCTTTTAGGCGGTTCGACA 57.245 45.000 0.00 0.00 37.34 4.35
3960 5243 3.801698 TCTGCAGGCATCTCATTTCTAC 58.198 45.455 15.13 0.00 0.00 2.59
4010 5293 3.007074 TGTTGAGCAAGGACGGTAACATA 59.993 43.478 0.00 0.00 0.00 2.29
4011 5294 4.189231 GTTGAGCAAGGACGGTAACATAT 58.811 43.478 0.00 0.00 0.00 1.78
4015 5298 3.054655 AGCAAGGACGGTAACATATTGGT 60.055 43.478 0.00 0.00 0.00 3.67
4084 5388 4.332637 CGCTGTTTTGCCGCTGCT 62.333 61.111 0.70 0.00 38.71 4.24
4085 5389 2.028043 GCTGTTTTGCCGCTGCTT 59.972 55.556 0.70 0.00 38.71 3.91
4096 5400 0.854705 CCGCTGCTTTGAAGTTTTGC 59.145 50.000 0.00 0.00 0.00 3.68
4337 5643 4.523943 ACAAGGCTTGAATGCATCAGTTTA 59.476 37.500 32.50 0.00 39.77 2.01
4369 5675 4.335416 ACCCACTGTGATTATTTCTGGTG 58.665 43.478 9.86 0.00 0.00 4.17
4407 5713 5.450171 GGTTCCTTTCTCGCTTCTTTTAAC 58.550 41.667 0.00 0.00 0.00 2.01
4438 5744 1.604593 CCCTTCCTTGTGGTGCTGG 60.605 63.158 0.00 0.00 34.23 4.85
4520 7452 5.975939 GCAATGGAATCATTACAAGCTCTTC 59.024 40.000 3.68 0.00 41.29 2.87
4581 7513 2.493675 GGAGAAGAAATTTGGCCTCACC 59.506 50.000 3.32 0.00 39.84 4.02
4593 7525 1.557443 GCCTCACCGAAGACAACACG 61.557 60.000 0.00 0.00 0.00 4.49
4618 7550 1.877576 TTGCTCGAGAGTCGTGGCAT 61.878 55.000 18.75 0.00 43.65 4.40
4620 7552 1.803289 CTCGAGAGTCGTGGCATCA 59.197 57.895 6.58 0.00 41.35 3.07
4640 7579 2.359848 CAGTATGATTCGGTCCGTACCA 59.640 50.000 11.88 0.00 42.67 3.25
4657 7596 1.144969 CCAGCAGTTGCAGCAAATTG 58.855 50.000 10.11 12.53 45.16 2.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
249 251 5.278463 GCCATGATGTTTACACTGAAGTTGT 60.278 40.000 0.00 0.00 0.00 3.32
317 344 6.743172 CGCGATGAGATCTTCGAAATTAGATA 59.257 38.462 18.67 0.00 43.48 1.98
527 554 2.560504 ACCATCGCGCTTCAAATATCA 58.439 42.857 5.56 0.00 0.00 2.15
528 555 3.242739 ACAACCATCGCGCTTCAAATATC 60.243 43.478 5.56 0.00 0.00 1.63
529 556 2.682856 ACAACCATCGCGCTTCAAATAT 59.317 40.909 5.56 0.00 0.00 1.28
530 557 2.080693 ACAACCATCGCGCTTCAAATA 58.919 42.857 5.56 0.00 0.00 1.40
531 558 0.881118 ACAACCATCGCGCTTCAAAT 59.119 45.000 5.56 0.00 0.00 2.32
532 559 0.040514 CACAACCATCGCGCTTCAAA 60.041 50.000 5.56 0.00 0.00 2.69
533 560 0.882484 TCACAACCATCGCGCTTCAA 60.882 50.000 5.56 0.00 0.00 2.69
534 561 0.673333 ATCACAACCATCGCGCTTCA 60.673 50.000 5.56 0.00 0.00 3.02
535 562 0.026803 GATCACAACCATCGCGCTTC 59.973 55.000 5.56 0.00 0.00 3.86
536 563 0.673333 TGATCACAACCATCGCGCTT 60.673 50.000 5.56 0.00 0.00 4.68
537 564 1.079197 TGATCACAACCATCGCGCT 60.079 52.632 5.56 0.00 0.00 5.92
538 565 1.060937 GTGATCACAACCATCGCGC 59.939 57.895 21.07 0.00 0.00 6.86
539 566 0.095245 GTGTGATCACAACCATCGCG 59.905 55.000 29.42 0.00 43.77 5.87
540 567 0.447801 GGTGTGATCACAACCATCGC 59.552 55.000 29.99 15.82 42.99 4.58
547 574 1.414550 TGGTTCGAGGTGTGATCACAA 59.585 47.619 29.42 11.59 45.45 3.33
548 575 1.044611 TGGTTCGAGGTGTGATCACA 58.955 50.000 24.56 24.56 45.45 3.58
549 576 2.163818 TTGGTTCGAGGTGTGATCAC 57.836 50.000 19.27 19.27 43.19 3.06
550 577 2.920724 TTTGGTTCGAGGTGTGATCA 57.079 45.000 0.00 0.00 0.00 2.92
551 578 3.502211 ACATTTTGGTTCGAGGTGTGATC 59.498 43.478 0.00 0.00 0.00 2.92
552 579 3.486383 ACATTTTGGTTCGAGGTGTGAT 58.514 40.909 0.00 0.00 0.00 3.06
553 580 2.925724 ACATTTTGGTTCGAGGTGTGA 58.074 42.857 0.00 0.00 0.00 3.58
554 581 3.708563 AACATTTTGGTTCGAGGTGTG 57.291 42.857 0.00 0.00 0.00 3.82
555 582 4.301637 GAAACATTTTGGTTCGAGGTGT 57.698 40.909 0.00 0.00 34.05 4.16
562 589 7.333174 TGGAACTCAAAAGAAACATTTTGGTTC 59.667 33.333 21.87 21.87 45.83 3.62
563 590 7.164803 TGGAACTCAAAAGAAACATTTTGGTT 58.835 30.769 10.93 12.44 45.83 3.67
564 591 6.706295 TGGAACTCAAAAGAAACATTTTGGT 58.294 32.000 10.93 6.28 45.83 3.67
565 592 7.608308 TTGGAACTCAAAAGAAACATTTTGG 57.392 32.000 10.93 5.79 45.83 3.28
578 605 7.390162 AGCTTTTGTTCAATTTTGGAACTCAAA 59.610 29.630 8.19 6.73 43.84 2.69
579 606 6.878389 AGCTTTTGTTCAATTTTGGAACTCAA 59.122 30.769 8.19 0.76 43.84 3.02
580 607 6.405538 AGCTTTTGTTCAATTTTGGAACTCA 58.594 32.000 8.19 0.00 43.84 3.41
581 608 6.908870 AGCTTTTGTTCAATTTTGGAACTC 57.091 33.333 8.19 0.00 43.84 3.01
582 609 8.962884 AATAGCTTTTGTTCAATTTTGGAACT 57.037 26.923 0.00 0.00 43.84 3.01
583 610 9.045223 AGAATAGCTTTTGTTCAATTTTGGAAC 57.955 29.630 0.00 0.00 43.78 3.62
585 612 9.691362 GTAGAATAGCTTTTGTTCAATTTTGGA 57.309 29.630 0.00 0.00 29.96 3.53
586 613 9.474920 TGTAGAATAGCTTTTGTTCAATTTTGG 57.525 29.630 0.00 0.00 29.96 3.28
591 618 9.683069 CAACTTGTAGAATAGCTTTTGTTCAAT 57.317 29.630 6.57 0.00 29.96 2.57
592 619 8.898761 TCAACTTGTAGAATAGCTTTTGTTCAA 58.101 29.630 0.00 0.00 29.96 2.69
593 620 8.342634 GTCAACTTGTAGAATAGCTTTTGTTCA 58.657 33.333 0.00 0.00 29.96 3.18
594 621 8.560374 AGTCAACTTGTAGAATAGCTTTTGTTC 58.440 33.333 0.00 0.00 0.00 3.18
595 622 8.451908 AGTCAACTTGTAGAATAGCTTTTGTT 57.548 30.769 0.00 0.00 0.00 2.83
596 623 7.095607 CGAGTCAACTTGTAGAATAGCTTTTGT 60.096 37.037 0.00 0.00 0.00 2.83
597 624 7.095607 ACGAGTCAACTTGTAGAATAGCTTTTG 60.096 37.037 1.04 0.00 38.76 2.44
598 625 6.929606 ACGAGTCAACTTGTAGAATAGCTTTT 59.070 34.615 1.04 0.00 38.76 2.27
599 626 6.456501 ACGAGTCAACTTGTAGAATAGCTTT 58.543 36.000 1.04 0.00 38.76 3.51
600 627 6.026947 ACGAGTCAACTTGTAGAATAGCTT 57.973 37.500 1.04 0.00 38.76 3.74
601 628 5.646577 ACGAGTCAACTTGTAGAATAGCT 57.353 39.130 1.04 0.00 38.76 3.32
602 629 6.707599 AAACGAGTCAACTTGTAGAATAGC 57.292 37.500 3.49 0.00 39.59 2.97
603 630 8.861101 CCTAAAACGAGTCAACTTGTAGAATAG 58.139 37.037 3.49 4.83 39.59 1.73
604 631 8.362639 ACCTAAAACGAGTCAACTTGTAGAATA 58.637 33.333 3.49 0.00 39.59 1.75
605 632 7.215085 ACCTAAAACGAGTCAACTTGTAGAAT 58.785 34.615 3.49 0.00 39.59 2.40
606 633 6.576185 ACCTAAAACGAGTCAACTTGTAGAA 58.424 36.000 3.49 0.00 39.59 2.10
607 634 6.040166 AGACCTAAAACGAGTCAACTTGTAGA 59.960 38.462 3.49 0.00 39.59 2.59
608 635 6.144080 CAGACCTAAAACGAGTCAACTTGTAG 59.856 42.308 3.49 0.00 39.59 2.74
609 636 5.981315 CAGACCTAAAACGAGTCAACTTGTA 59.019 40.000 3.49 0.00 39.59 2.41
610 637 4.809426 CAGACCTAAAACGAGTCAACTTGT 59.191 41.667 0.00 0.00 42.20 3.16
611 638 5.047847 TCAGACCTAAAACGAGTCAACTTG 58.952 41.667 0.00 0.00 32.82 3.16
612 639 5.272283 TCAGACCTAAAACGAGTCAACTT 57.728 39.130 0.00 0.00 32.82 2.66
613 640 4.931661 TCAGACCTAAAACGAGTCAACT 57.068 40.909 0.00 0.00 32.82 3.16
614 641 5.751990 TCTTTCAGACCTAAAACGAGTCAAC 59.248 40.000 0.00 0.00 32.82 3.18
615 642 5.751990 GTCTTTCAGACCTAAAACGAGTCAA 59.248 40.000 0.00 0.00 39.28 3.18
616 643 5.287226 GTCTTTCAGACCTAAAACGAGTCA 58.713 41.667 0.00 0.00 39.28 3.41
617 644 4.382160 CGTCTTTCAGACCTAAAACGAGTC 59.618 45.833 0.00 0.00 42.12 3.36
618 645 4.296690 CGTCTTTCAGACCTAAAACGAGT 58.703 43.478 0.00 0.00 42.12 4.18
619 646 3.121445 GCGTCTTTCAGACCTAAAACGAG 59.879 47.826 0.00 0.00 42.12 4.18
620 647 3.054878 GCGTCTTTCAGACCTAAAACGA 58.945 45.455 0.00 0.00 42.12 3.85
621 648 2.160013 CGCGTCTTTCAGACCTAAAACG 60.160 50.000 0.00 0.00 42.12 3.60
622 649 2.157085 CCGCGTCTTTCAGACCTAAAAC 59.843 50.000 4.92 0.00 42.12 2.43
623 650 2.409975 CCGCGTCTTTCAGACCTAAAA 58.590 47.619 4.92 0.00 42.12 1.52
624 651 1.337447 CCCGCGTCTTTCAGACCTAAA 60.337 52.381 4.92 0.00 42.12 1.85
625 652 0.245539 CCCGCGTCTTTCAGACCTAA 59.754 55.000 4.92 0.00 42.12 2.69
626 653 1.888018 CCCGCGTCTTTCAGACCTA 59.112 57.895 4.92 0.00 42.12 3.08
627 654 2.657237 CCCGCGTCTTTCAGACCT 59.343 61.111 4.92 0.00 42.12 3.85
628 655 3.119096 GCCCGCGTCTTTCAGACC 61.119 66.667 4.92 0.00 42.12 3.85
629 656 3.479269 CGCCCGCGTCTTTCAGAC 61.479 66.667 4.92 0.00 41.71 3.51
630 657 2.501223 AATCGCCCGCGTCTTTCAGA 62.501 55.000 4.92 0.00 40.74 3.27
631 658 1.635663 AAATCGCCCGCGTCTTTCAG 61.636 55.000 4.92 0.00 40.74 3.02
632 659 1.669760 AAATCGCCCGCGTCTTTCA 60.670 52.632 4.92 0.00 40.74 2.69
633 660 1.226018 CAAATCGCCCGCGTCTTTC 60.226 57.895 4.92 0.00 40.74 2.62
634 661 1.231958 TTCAAATCGCCCGCGTCTTT 61.232 50.000 4.92 7.62 40.74 2.52
635 662 1.635663 CTTCAAATCGCCCGCGTCTT 61.636 55.000 4.92 1.69 40.74 3.01
636 663 2.047655 TTCAAATCGCCCGCGTCT 60.048 55.556 4.92 0.00 40.74 4.18
637 664 2.399611 CTTCAAATCGCCCGCGTC 59.600 61.111 4.92 0.00 40.74 5.19
638 665 3.124921 CCTTCAAATCGCCCGCGT 61.125 61.111 4.92 0.00 40.74 6.01
639 666 2.686816 AACCTTCAAATCGCCCGCG 61.687 57.895 0.00 0.00 41.35 6.46
640 667 1.154035 CAACCTTCAAATCGCCCGC 60.154 57.895 0.00 0.00 0.00 6.13
641 668 1.094785 ATCAACCTTCAAATCGCCCG 58.905 50.000 0.00 0.00 0.00 6.13
642 669 1.818674 ACATCAACCTTCAAATCGCCC 59.181 47.619 0.00 0.00 0.00 6.13
643 670 3.575965 AACATCAACCTTCAAATCGCC 57.424 42.857 0.00 0.00 0.00 5.54
644 671 5.918011 TGTTTAACATCAACCTTCAAATCGC 59.082 36.000 0.00 0.00 0.00 4.58
645 672 7.594758 ACATGTTTAACATCAACCTTCAAATCG 59.405 33.333 7.71 0.00 36.53 3.34
646 673 8.816640 ACATGTTTAACATCAACCTTCAAATC 57.183 30.769 7.71 0.00 36.53 2.17
647 674 7.872483 GGACATGTTTAACATCAACCTTCAAAT 59.128 33.333 7.71 0.00 36.53 2.32
648 675 7.069331 AGGACATGTTTAACATCAACCTTCAAA 59.931 33.333 7.71 0.00 36.53 2.69
649 676 6.549364 AGGACATGTTTAACATCAACCTTCAA 59.451 34.615 7.71 0.00 36.53 2.69
650 677 6.068010 AGGACATGTTTAACATCAACCTTCA 58.932 36.000 7.71 0.00 36.53 3.02
651 678 6.575162 AGGACATGTTTAACATCAACCTTC 57.425 37.500 7.71 0.00 36.53 3.46
652 679 6.976934 AAGGACATGTTTAACATCAACCTT 57.023 33.333 22.11 22.11 36.53 3.50
653 680 6.659242 CCTAAGGACATGTTTAACATCAACCT 59.341 38.462 7.71 12.95 36.53 3.50
654 681 6.433093 ACCTAAGGACATGTTTAACATCAACC 59.567 38.462 7.71 11.09 36.53 3.77
655 682 7.390718 AGACCTAAGGACATGTTTAACATCAAC 59.609 37.037 7.71 1.44 36.53 3.18
656 683 7.458397 AGACCTAAGGACATGTTTAACATCAA 58.542 34.615 7.71 0.00 36.53 2.57
657 684 7.016153 AGACCTAAGGACATGTTTAACATCA 57.984 36.000 7.71 0.00 36.53 3.07
658 685 7.606456 TCAAGACCTAAGGACATGTTTAACATC 59.394 37.037 7.71 0.00 36.53 3.06
659 686 7.458397 TCAAGACCTAAGGACATGTTTAACAT 58.542 34.615 4.56 4.56 39.91 2.71
660 687 6.833041 TCAAGACCTAAGGACATGTTTAACA 58.167 36.000 0.00 0.00 0.00 2.41
661 688 7.573283 GCTTCAAGACCTAAGGACATGTTTAAC 60.573 40.741 0.00 0.00 0.00 2.01
662 689 6.430000 GCTTCAAGACCTAAGGACATGTTTAA 59.570 38.462 0.00 0.00 0.00 1.52
663 690 5.938125 GCTTCAAGACCTAAGGACATGTTTA 59.062 40.000 0.00 0.00 0.00 2.01
664 691 4.762251 GCTTCAAGACCTAAGGACATGTTT 59.238 41.667 0.00 0.00 0.00 2.83
665 692 4.042187 AGCTTCAAGACCTAAGGACATGTT 59.958 41.667 0.00 0.00 0.00 2.71
666 693 3.584848 AGCTTCAAGACCTAAGGACATGT 59.415 43.478 0.00 0.00 0.00 3.21
667 694 4.213564 AGCTTCAAGACCTAAGGACATG 57.786 45.455 0.00 0.00 0.00 3.21
668 695 5.902431 AGATAGCTTCAAGACCTAAGGACAT 59.098 40.000 0.00 0.00 0.00 3.06
669 696 5.273208 AGATAGCTTCAAGACCTAAGGACA 58.727 41.667 0.00 0.00 0.00 4.02
670 697 5.862678 AGATAGCTTCAAGACCTAAGGAC 57.137 43.478 0.00 0.00 0.00 3.85
671 698 6.875972 AAAGATAGCTTCAAGACCTAAGGA 57.124 37.500 0.00 0.00 31.82 3.36
672 699 9.050601 CAATAAAGATAGCTTCAAGACCTAAGG 57.949 37.037 0.00 0.00 31.82 2.69
673 700 9.050601 CCAATAAAGATAGCTTCAAGACCTAAG 57.949 37.037 0.00 0.00 31.82 2.18
674 701 7.993183 CCCAATAAAGATAGCTTCAAGACCTAA 59.007 37.037 0.00 0.00 31.82 2.69
675 702 7.509546 CCCAATAAAGATAGCTTCAAGACCTA 58.490 38.462 0.00 0.00 31.82 3.08
676 703 6.360618 CCCAATAAAGATAGCTTCAAGACCT 58.639 40.000 0.00 0.00 31.82 3.85
677 704 5.009110 GCCCAATAAAGATAGCTTCAAGACC 59.991 44.000 0.00 0.00 31.82 3.85
678 705 5.825151 AGCCCAATAAAGATAGCTTCAAGAC 59.175 40.000 0.00 0.00 31.82 3.01
679 706 6.006275 AGCCCAATAAAGATAGCTTCAAGA 57.994 37.500 0.00 0.00 31.82 3.02
680 707 6.705863 AAGCCCAATAAAGATAGCTTCAAG 57.294 37.500 0.00 0.00 35.79 3.02
681 708 8.632679 CATAAAGCCCAATAAAGATAGCTTCAA 58.367 33.333 0.00 0.00 39.51 2.69
682 709 7.998383 TCATAAAGCCCAATAAAGATAGCTTCA 59.002 33.333 0.00 0.00 39.51 3.02
683 710 8.396272 TCATAAAGCCCAATAAAGATAGCTTC 57.604 34.615 0.00 0.00 39.51 3.86
684 711 8.633561 GTTCATAAAGCCCAATAAAGATAGCTT 58.366 33.333 0.00 0.00 42.06 3.74
685 712 7.779798 TGTTCATAAAGCCCAATAAAGATAGCT 59.220 33.333 0.00 0.00 0.00 3.32
686 713 7.940850 TGTTCATAAAGCCCAATAAAGATAGC 58.059 34.615 0.00 0.00 0.00 2.97
715 742 1.142778 GCGCGTTGCAACTGGAAAAA 61.143 50.000 26.09 0.00 45.45 1.94
716 743 1.587613 GCGCGTTGCAACTGGAAAA 60.588 52.632 26.09 0.00 45.45 2.29
717 744 2.025441 GCGCGTTGCAACTGGAAA 59.975 55.556 26.09 0.00 45.45 3.13
718 745 4.306471 CGCGCGTTGCAACTGGAA 62.306 61.111 26.09 0.00 46.97 3.53
723 750 2.304516 ATATGTCCGCGCGTTGCAAC 62.305 55.000 29.95 19.89 46.97 4.17
724 751 0.806492 TATATGTCCGCGCGTTGCAA 60.806 50.000 29.95 11.52 46.97 4.08
725 752 0.598942 ATATATGTCCGCGCGTTGCA 60.599 50.000 29.95 22.93 46.97 4.08
726 753 0.179250 CATATATGTCCGCGCGTTGC 60.179 55.000 29.95 17.96 41.47 4.17
727 754 0.179250 GCATATATGTCCGCGCGTTG 60.179 55.000 29.95 14.87 0.00 4.10
728 755 0.319555 AGCATATATGTCCGCGCGTT 60.320 50.000 29.95 12.80 0.00 4.84
729 756 0.524414 TAGCATATATGTCCGCGCGT 59.476 50.000 29.95 12.94 0.00 6.01
730 757 1.624487 TTAGCATATATGTCCGCGCG 58.376 50.000 25.67 25.67 0.00 6.86
731 758 3.736252 CCTATTAGCATATATGTCCGCGC 59.264 47.826 14.14 0.00 0.00 6.86
732 759 4.976731 GTCCTATTAGCATATATGTCCGCG 59.023 45.833 14.14 0.00 0.00 6.46
733 760 5.902681 TGTCCTATTAGCATATATGTCCGC 58.097 41.667 14.14 0.00 0.00 5.54
734 761 8.630037 TGTATGTCCTATTAGCATATATGTCCG 58.370 37.037 14.14 0.00 0.00 4.79
735 762 9.751542 GTGTATGTCCTATTAGCATATATGTCC 57.248 37.037 14.14 0.00 0.00 4.02
736 763 9.452065 CGTGTATGTCCTATTAGCATATATGTC 57.548 37.037 14.14 6.78 0.00 3.06
737 764 8.967918 ACGTGTATGTCCTATTAGCATATATGT 58.032 33.333 14.14 4.18 34.16 2.29
738 765 9.237846 CACGTGTATGTCCTATTAGCATATATG 57.762 37.037 7.58 8.45 32.87 1.78
739 766 7.921214 GCACGTGTATGTCCTATTAGCATATAT 59.079 37.037 18.38 0.00 0.00 0.86
740 767 7.094118 TGCACGTGTATGTCCTATTAGCATATA 60.094 37.037 18.38 0.00 0.00 0.86
741 768 6.100004 GCACGTGTATGTCCTATTAGCATAT 58.900 40.000 18.38 0.00 0.00 1.78
742 769 5.010213 TGCACGTGTATGTCCTATTAGCATA 59.990 40.000 18.38 0.00 0.00 3.14
743 770 4.202212 TGCACGTGTATGTCCTATTAGCAT 60.202 41.667 18.38 0.00 0.00 3.79
744 771 3.131400 TGCACGTGTATGTCCTATTAGCA 59.869 43.478 18.38 0.00 0.00 3.49
745 772 3.489785 GTGCACGTGTATGTCCTATTAGC 59.510 47.826 18.38 0.00 0.00 3.09
746 773 3.729217 CGTGCACGTGTATGTCCTATTAG 59.271 47.826 30.50 0.00 34.11 1.73
747 774 3.489568 CCGTGCACGTGTATGTCCTATTA 60.490 47.826 34.81 0.00 37.74 0.98
748 775 2.536365 CGTGCACGTGTATGTCCTATT 58.464 47.619 30.50 0.00 34.11 1.73
916 976 0.526211 GTTTGGAGCGGATTGGGTTC 59.474 55.000 0.00 0.00 0.00 3.62
917 977 0.898326 GGTTTGGAGCGGATTGGGTT 60.898 55.000 0.00 0.00 0.00 4.11
918 978 1.304134 GGTTTGGAGCGGATTGGGT 60.304 57.895 0.00 0.00 0.00 4.51
919 979 0.254747 TAGGTTTGGAGCGGATTGGG 59.745 55.000 0.00 0.00 0.00 4.12
920 980 1.668419 CTAGGTTTGGAGCGGATTGG 58.332 55.000 0.00 0.00 0.00 3.16
922 982 0.546598 CCCTAGGTTTGGAGCGGATT 59.453 55.000 8.29 0.00 0.00 3.01
923 983 0.620700 ACCCTAGGTTTGGAGCGGAT 60.621 55.000 8.29 0.00 27.29 4.18
924 984 0.838987 AACCCTAGGTTTGGAGCGGA 60.839 55.000 8.29 0.00 44.33 5.54
1041 1105 1.135315 GTCTGCACGTACCCATTCGTA 60.135 52.381 0.00 0.00 38.52 3.43
1430 1518 5.339008 TGACAGATACAGGGATAACACAC 57.661 43.478 0.00 0.00 0.00 3.82
1432 1520 4.100189 AGCTGACAGATACAGGGATAACAC 59.900 45.833 6.65 0.00 36.09 3.32
1434 1522 4.946478 AGCTGACAGATACAGGGATAAC 57.054 45.455 6.65 0.00 36.09 1.89
1435 1523 7.950684 AGTATTAGCTGACAGATACAGGGATAA 59.049 37.037 6.65 0.00 36.09 1.75
1440 1530 8.200792 AGAAAAGTATTAGCTGACAGATACAGG 58.799 37.037 6.65 0.00 36.09 4.00
1457 1547 7.458397 TCCAACAGTTCCACATAGAAAAGTAT 58.542 34.615 0.00 0.00 0.00 2.12
1458 1548 6.833041 TCCAACAGTTCCACATAGAAAAGTA 58.167 36.000 0.00 0.00 0.00 2.24
1459 1549 5.690865 TCCAACAGTTCCACATAGAAAAGT 58.309 37.500 0.00 0.00 0.00 2.66
1460 1550 5.997746 TCTCCAACAGTTCCACATAGAAAAG 59.002 40.000 0.00 0.00 0.00 2.27
1464 1583 3.515502 CCTCTCCAACAGTTCCACATAGA 59.484 47.826 0.00 0.00 0.00 1.98
1487 1607 1.146774 TCAAAATTCTGTCCCTGGCCA 59.853 47.619 4.71 4.71 0.00 5.36
1501 1621 8.780846 ATTGCACATGAATGTATTGTCAAAAT 57.219 26.923 0.00 0.00 39.39 1.82
1530 1659 8.454106 CGAAAACCAAATGAAGATATCAGACTT 58.546 33.333 5.32 0.00 42.53 3.01
1532 1661 7.974675 TCGAAAACCAAATGAAGATATCAGAC 58.025 34.615 5.32 0.00 42.53 3.51
1539 1668 8.525290 AATATCCTCGAAAACCAAATGAAGAT 57.475 30.769 0.00 0.00 0.00 2.40
1552 1681 8.105097 TGTTTCAATGTGAAATATCCTCGAAA 57.895 30.769 6.69 0.00 46.55 3.46
1630 1789 7.307573 CCGGGATTTTATACTTCATTACGAACC 60.308 40.741 0.00 0.00 0.00 3.62
1638 1797 6.039382 GCAGAAACCGGGATTTTATACTTCAT 59.961 38.462 6.32 0.00 0.00 2.57
1688 1854 8.359642 ACAACTGCACATATGAACTGTAAAAAT 58.640 29.630 10.38 0.00 0.00 1.82
1689 1855 7.711846 ACAACTGCACATATGAACTGTAAAAA 58.288 30.769 10.38 0.00 0.00 1.94
1733 1907 5.541845 TCCACATGTCTTGTCAGAAACTAG 58.458 41.667 0.00 0.00 36.00 2.57
1754 1928 2.622436 CCGTGAACCTGAGAAGATTCC 58.378 52.381 0.00 0.00 0.00 3.01
1988 2182 3.165875 CCCTTTTCCTTCTTTCCCTTCC 58.834 50.000 0.00 0.00 0.00 3.46
2187 2388 1.473257 GCCTCAGAATCATGGCGTGTA 60.473 52.381 6.60 0.00 35.79 2.90
2262 2463 2.272471 GGCCCCTTCTTTCCCTCG 59.728 66.667 0.00 0.00 0.00 4.63
2374 2575 2.094803 AGTCGCTCTCTGAATCACTGTG 60.095 50.000 0.17 0.17 0.00 3.66
2841 3042 2.537529 CCTCGTGCGCTTATCAACATTG 60.538 50.000 9.73 0.00 0.00 2.82
2867 3068 9.854668 AATCAGAATCAGAATCAGAATCAGAAT 57.145 29.630 0.00 0.00 0.00 2.40
2868 3069 9.327628 GAATCAGAATCAGAATCAGAATCAGAA 57.672 33.333 0.00 0.00 0.00 3.02
2869 3070 7.652507 CGAATCAGAATCAGAATCAGAATCAGA 59.347 37.037 0.00 0.00 0.00 3.27
2870 3071 7.095565 CCGAATCAGAATCAGAATCAGAATCAG 60.096 40.741 0.00 0.00 0.00 2.90
2871 3072 6.704937 CCGAATCAGAATCAGAATCAGAATCA 59.295 38.462 0.00 0.00 0.00 2.57
2872 3073 6.927936 TCCGAATCAGAATCAGAATCAGAATC 59.072 38.462 0.00 0.00 0.00 2.52
2996 3197 2.352034 CTCACATCTGATTCACTGCTGC 59.648 50.000 0.00 0.00 0.00 5.25
2997 3198 2.352034 GCTCACATCTGATTCACTGCTG 59.648 50.000 0.00 0.00 0.00 4.41
2998 3199 2.630158 GCTCACATCTGATTCACTGCT 58.370 47.619 0.00 0.00 0.00 4.24
3060 3261 3.182887 TGGTTCTGGCCATTACCATTT 57.817 42.857 26.93 0.00 39.54 2.32
3072 3273 1.478105 GCCCTTTTAGCATGGTTCTGG 59.522 52.381 1.12 0.92 0.00 3.86
3122 3323 4.079787 TCCTTCTCCCATATTGACCCTTTG 60.080 45.833 0.00 0.00 0.00 2.77
3133 3334 4.233053 TCTCTCTTCCTTCCTTCTCCCATA 59.767 45.833 0.00 0.00 0.00 2.74
3162 3363 3.954258 CCCTCTGTTTTTGTTTCTCCTGT 59.046 43.478 0.00 0.00 0.00 4.00
3186 3387 4.746466 TCTCCAACTCTTTCCTCTCTTCT 58.254 43.478 0.00 0.00 0.00 2.85
3210 3411 3.134081 TCTCTTCCTCCAGACGTTTTTGT 59.866 43.478 0.00 0.00 0.00 2.83
3429 3645 0.792640 AATCTTCACGCGTCTTGCAG 59.207 50.000 9.86 0.00 46.97 4.41
3430 3646 2.073117 TAATCTTCACGCGTCTTGCA 57.927 45.000 9.86 0.00 46.97 4.08
3431 3647 2.285834 CCATAATCTTCACGCGTCTTGC 60.286 50.000 9.86 0.00 41.47 4.01
3528 3747 2.567615 ACCGTACTCTTCATGCCTCTTT 59.432 45.455 0.00 0.00 0.00 2.52
3731 3950 1.808945 CCTCCACAGTGATGCAAACTC 59.191 52.381 0.62 0.00 0.00 3.01
3748 3967 5.050567 CGGTAAAAGTGTGTGTTTACTCCTC 60.051 44.000 6.33 0.00 39.25 3.71
3764 3983 8.736751 ATTAGCATTAACACAAACGGTAAAAG 57.263 30.769 0.00 0.00 0.00 2.27
3834 5116 7.278135 TCATCCAAGTGAAATAATCTGAGAGG 58.722 38.462 0.00 0.00 0.00 3.69
3889 5171 3.177997 ACAATGAACACAAAAGGGTGC 57.822 42.857 0.00 0.00 42.55 5.01
3890 5172 5.009854 AGAACAATGAACACAAAAGGGTG 57.990 39.130 0.00 0.00 44.35 4.61
3891 5173 5.186797 TGAAGAACAATGAACACAAAAGGGT 59.813 36.000 0.00 0.00 0.00 4.34
3893 5175 7.707893 AGAATGAAGAACAATGAACACAAAAGG 59.292 33.333 0.00 0.00 0.00 3.11
3927 5210 1.483595 CCTGCAGAGGGACACCAGAA 61.484 60.000 17.39 0.00 40.13 3.02
3960 5243 4.783841 GCGCTGCACTTCGCTTCG 62.784 66.667 13.85 0.00 46.92 3.79
4002 5285 5.359576 TCTTCAATGGCACCAATATGTTACC 59.640 40.000 0.00 0.00 0.00 2.85
4010 5293 1.551883 GCCTTCTTCAATGGCACCAAT 59.448 47.619 0.00 0.00 45.46 3.16
4011 5294 0.968405 GCCTTCTTCAATGGCACCAA 59.032 50.000 0.00 0.00 45.46 3.67
4084 5388 4.757594 ACATGAGCAAGCAAAACTTCAAA 58.242 34.783 0.00 0.00 36.04 2.69
4085 5389 4.389890 ACATGAGCAAGCAAAACTTCAA 57.610 36.364 0.00 0.00 36.04 2.69
4096 5400 5.633830 AAGTCCATACAAACATGAGCAAG 57.366 39.130 0.00 0.00 0.00 4.01
4337 5643 1.977854 TCACAGTGGGTAACAGATGCT 59.022 47.619 0.00 0.00 39.74 3.79
4369 5675 1.685148 GAACCCAGCATCATCTTCCC 58.315 55.000 0.00 0.00 0.00 3.97
4560 7492 2.493675 GGTGAGGCCAAATTTCTTCTCC 59.506 50.000 5.01 0.00 37.17 3.71
4561 7493 2.162408 CGGTGAGGCCAAATTTCTTCTC 59.838 50.000 5.01 0.00 36.97 2.87
4581 7513 3.859961 AGCAAGATATCGTGTTGTCTTCG 59.140 43.478 18.13 0.00 33.81 3.79
4593 7525 3.550561 CACGACTCTCGAGCAAGATATC 58.449 50.000 7.81 0.00 43.74 1.63
4618 7550 2.620115 GGTACGGACCGAATCATACTGA 59.380 50.000 23.38 0.00 35.52 3.41
4633 7572 2.680913 GCTGCAACTGCTGGTACGG 61.681 63.158 10.14 0.00 42.66 4.02
4640 7579 0.601841 GCCAATTTGCTGCAACTGCT 60.602 50.000 15.72 0.00 42.66 4.24
4645 7584 0.597118 GTCGTGCCAATTTGCTGCAA 60.597 50.000 11.69 11.69 36.65 4.08
4657 7596 0.320421 TCCAGTTTGCTAGTCGTGCC 60.320 55.000 0.00 0.00 0.00 5.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.