Multiple sequence alignment - TraesCS2B01G450000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G450000 chr2B 100.000 5840 0 0 1 5840 643204493 643198654 0.000000e+00 10785
1 TraesCS2B01G450000 chr2B 82.372 3035 429 69 1879 4865 637933350 637930374 0.000000e+00 2543
2 TraesCS2B01G450000 chr2B 78.038 1621 278 46 1863 3447 637767847 637766269 0.000000e+00 950
3 TraesCS2B01G450000 chr2B 77.600 1625 289 48 1863 3452 638264827 638263243 0.000000e+00 915
4 TraesCS2B01G450000 chr2B 77.148 1606 285 58 1885 3452 729901768 729900207 0.000000e+00 857
5 TraesCS2B01G450000 chr2B 74.690 1612 322 60 1875 3449 638758170 638756608 6.380000e-179 638
6 TraesCS2B01G450000 chr2B 76.379 580 102 22 1028 1605 637779738 637779192 4.460000e-71 279
7 TraesCS2B01G450000 chr2D 91.971 3537 220 27 45 3539 539312710 539309196 0.000000e+00 4900
8 TraesCS2B01G450000 chr2D 89.672 2285 156 30 3589 5837 539309185 539306945 0.000000e+00 2839
9 TraesCS2B01G450000 chr2D 76.899 1606 286 57 1885 3452 599948750 599947192 0.000000e+00 832
10 TraesCS2B01G450000 chr2D 74.596 1610 326 58 1875 3449 536509469 536507908 1.070000e-176 630
11 TraesCS2B01G450000 chr2D 77.182 951 172 30 2541 3475 536384336 536383415 4.040000e-141 512
12 TraesCS2B01G450000 chr2D 84.318 440 59 7 1876 2309 536226742 536226307 7.000000e-114 422
13 TraesCS2B01G450000 chr2D 75.281 712 128 32 906 1605 536386345 536385670 4.420000e-76 296
14 TraesCS2B01G450000 chr2D 80.751 213 34 6 1397 1605 599949251 599949042 6.060000e-35 159
15 TraesCS2B01G450000 chr2A 92.892 2870 161 20 694 3530 682614333 682611474 0.000000e+00 4130
16 TraesCS2B01G450000 chr2A 89.598 2288 166 22 3590 5840 682611468 682609216 0.000000e+00 2841
17 TraesCS2B01G450000 chr2A 77.103 1629 306 46 1854 3449 678969740 678968146 0.000000e+00 880
18 TraesCS2B01G450000 chr2A 86.610 702 51 20 2 691 682615846 682615176 0.000000e+00 736
19 TraesCS2B01G450000 chr2A 74.566 1612 325 56 1875 3449 679265966 679264403 1.380000e-175 627


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G450000 chr2B 643198654 643204493 5839 True 10785.0 10785 100.0000 1 5840 1 chr2B.!!$R6 5839
1 TraesCS2B01G450000 chr2B 637930374 637933350 2976 True 2543.0 2543 82.3720 1879 4865 1 chr2B.!!$R3 2986
2 TraesCS2B01G450000 chr2B 637766269 637767847 1578 True 950.0 950 78.0380 1863 3447 1 chr2B.!!$R1 1584
3 TraesCS2B01G450000 chr2B 638263243 638264827 1584 True 915.0 915 77.6000 1863 3452 1 chr2B.!!$R4 1589
4 TraesCS2B01G450000 chr2B 729900207 729901768 1561 True 857.0 857 77.1480 1885 3452 1 chr2B.!!$R7 1567
5 TraesCS2B01G450000 chr2B 638756608 638758170 1562 True 638.0 638 74.6900 1875 3449 1 chr2B.!!$R5 1574
6 TraesCS2B01G450000 chr2B 637779192 637779738 546 True 279.0 279 76.3790 1028 1605 1 chr2B.!!$R2 577
7 TraesCS2B01G450000 chr2D 539306945 539312710 5765 True 3869.5 4900 90.8215 45 5837 2 chr2D.!!$R4 5792
8 TraesCS2B01G450000 chr2D 536507908 536509469 1561 True 630.0 630 74.5960 1875 3449 1 chr2D.!!$R2 1574
9 TraesCS2B01G450000 chr2D 599947192 599949251 2059 True 495.5 832 78.8250 1397 3452 2 chr2D.!!$R5 2055
10 TraesCS2B01G450000 chr2D 536383415 536386345 2930 True 404.0 512 76.2315 906 3475 2 chr2D.!!$R3 2569
11 TraesCS2B01G450000 chr2A 682609216 682615846 6630 True 2569.0 4130 89.7000 2 5840 3 chr2A.!!$R3 5838
12 TraesCS2B01G450000 chr2A 678968146 678969740 1594 True 880.0 880 77.1030 1854 3449 1 chr2A.!!$R1 1595
13 TraesCS2B01G450000 chr2A 679264403 679265966 1563 True 627.0 627 74.5660 1875 3449 1 chr2A.!!$R2 1574

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
153 158 0.037975 CCAGGCAAACCGTACGTAGT 60.038 55.000 15.21 2.62 43.85 2.73 F
349 360 1.035932 TCCGGGAGTCATCGTCTTCC 61.036 60.000 0.00 0.00 0.00 3.46 F
1209 2112 0.247460 TTGCTCACATGGACTCCTCG 59.753 55.000 0.00 0.00 0.00 4.63 F
1224 2127 1.071471 CTCGGTCAACAAGGCCACT 59.929 57.895 5.01 0.00 44.49 4.00 F
1225 2128 1.227823 TCGGTCAACAAGGCCACTG 60.228 57.895 5.01 4.04 44.49 3.66 F
1561 2467 1.345741 GATGGGATTCTGCATCTCCGA 59.654 52.381 0.00 0.00 29.90 4.55 F
2109 3148 1.620822 AGTTTGATGGTTCAGGTGGC 58.379 50.000 0.00 0.00 32.27 5.01 F
2985 4468 2.076863 GGTTCCCAGATGTTGAAGACG 58.923 52.381 0.00 0.00 0.00 4.18 F
4120 5635 0.251742 TCAACCCCCTTCATGGCTTG 60.252 55.000 0.00 0.00 0.00 4.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1209 2112 0.179018 AGACAGTGGCCTTGTTGACC 60.179 55.000 13.57 2.97 0.00 4.02 R
1224 2127 1.059098 AAGCCAGTGTGGATGAGACA 58.941 50.000 0.00 0.00 40.96 3.41 R
2430 3524 0.236187 TACGAAACGCCATTGCACAC 59.764 50.000 0.00 0.00 37.32 3.82 R
2479 3573 1.298859 CTGCACAAGGAAGTACCCGC 61.299 60.000 0.00 0.00 40.05 6.13 R
2758 4222 2.002586 CGACCTACTTTGCACATCAGG 58.997 52.381 0.00 0.00 0.00 3.86 R
2970 4453 2.480419 GTGTTCCGTCTTCAACATCTGG 59.520 50.000 0.00 0.00 35.05 3.86 R
3885 5400 1.972872 ATTGTCTCATCCGCCAATCC 58.027 50.000 0.00 0.00 0.00 3.01 R
4599 6128 1.142465 CTGCATGAGGCTATGGACCTT 59.858 52.381 0.00 0.00 45.15 3.50 R
5277 6807 0.184692 TGTGATGGTTGTGCCCTTGA 59.815 50.000 0.00 0.00 36.04 3.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 1.669265 GAAATACGCAACCTAGGCACC 59.331 52.381 9.30 0.00 0.00 5.01
21 22 0.909623 AATACGCAACCTAGGCACCT 59.090 50.000 9.30 0.00 0.00 4.00
22 23 0.178068 ATACGCAACCTAGGCACCTG 59.822 55.000 9.30 2.44 0.00 4.00
23 24 2.515996 TACGCAACCTAGGCACCTGC 62.516 60.000 9.30 11.80 41.14 4.85
25 26 3.127533 CAACCTAGGCACCTGCGC 61.128 66.667 9.30 0.00 43.26 6.09
26 27 4.760047 AACCTAGGCACCTGCGCG 62.760 66.667 9.30 0.00 43.26 6.86
29 30 4.207281 CTAGGCACCTGCGCGCTA 62.207 66.667 33.29 17.49 43.26 4.26
30 31 4.207281 TAGGCACCTGCGCGCTAG 62.207 66.667 33.29 25.26 43.26 3.42
34 35 2.183300 CACCTGCGCGCTAGGTTA 59.817 61.111 36.32 17.43 46.13 2.85
35 36 1.447140 CACCTGCGCGCTAGGTTAA 60.447 57.895 36.32 16.76 46.13 2.01
36 37 1.153628 ACCTGCGCGCTAGGTTAAG 60.154 57.895 34.50 22.56 46.13 1.85
37 38 2.526120 CCTGCGCGCTAGGTTAAGC 61.526 63.158 33.29 6.11 39.21 3.09
38 39 1.809619 CTGCGCGCTAGGTTAAGCA 60.810 57.895 33.29 6.44 42.91 3.91
39 40 1.358725 CTGCGCGCTAGGTTAAGCAA 61.359 55.000 33.29 5.84 42.91 3.91
40 41 0.742990 TGCGCGCTAGGTTAAGCAAT 60.743 50.000 33.29 0.00 42.91 3.56
95 100 0.100682 ACCTAGTACGCTGCATGTCG 59.899 55.000 0.00 0.00 0.00 4.35
116 121 3.242091 CGTGTCCATTTAGACGCATCAAG 60.242 47.826 6.11 0.00 45.55 3.02
140 145 1.829523 GCTTTTCCATTGGCCAGGCA 61.830 55.000 15.19 0.95 0.00 4.75
153 158 0.037975 CCAGGCAAACCGTACGTAGT 60.038 55.000 15.21 2.62 43.85 2.73
243 248 1.571919 CCGTAGTTGGCTAGATGTGC 58.428 55.000 0.00 0.00 0.00 4.57
267 272 4.445545 CTTCGGCGCCGTTCTTGC 62.446 66.667 44.16 7.41 40.74 4.01
302 307 3.435671 CCTACAATGACCGAAGAAACCAC 59.564 47.826 0.00 0.00 0.00 4.16
311 316 1.071699 CGAAGAAACCACCCTCTTGGA 59.928 52.381 0.00 0.00 39.24 3.53
318 323 1.358152 CCACCCTCTTGGACTTGGTA 58.642 55.000 0.00 0.00 39.24 3.25
335 346 2.070039 TATTGGCCTCACCTCCGGG 61.070 63.158 3.32 0.00 40.22 5.73
349 360 1.035932 TCCGGGAGTCATCGTCTTCC 61.036 60.000 0.00 0.00 0.00 3.46
382 393 3.749064 GACTCGCGTCAGGGCTCA 61.749 66.667 5.77 0.00 39.98 4.26
397 408 1.339151 GGCTCAGACGATGGTTCCTTT 60.339 52.381 0.00 0.00 0.00 3.11
404 415 6.884832 TCAGACGATGGTTCCTTTATGTATT 58.115 36.000 0.00 0.00 0.00 1.89
416 427 4.334203 CCTTTATGTATTGGTAAGCGTGCA 59.666 41.667 0.00 0.00 0.00 4.57
425 436 4.875561 TGGTAAGCGTGCACCATATATA 57.124 40.909 12.15 0.00 39.91 0.86
473 485 9.338622 CTCAAGGGTAACTATAAAAATGGGTAG 57.661 37.037 0.00 0.00 0.00 3.18
539 551 1.129251 GTGACTGCGTGAATGTCATGG 59.871 52.381 0.00 0.00 41.78 3.66
540 552 1.270785 TGACTGCGTGAATGTCATGGT 60.271 47.619 0.00 0.00 36.03 3.55
541 553 1.806542 GACTGCGTGAATGTCATGGTT 59.193 47.619 0.00 0.00 34.08 3.67
542 554 3.000041 GACTGCGTGAATGTCATGGTTA 59.000 45.455 0.00 0.00 34.08 2.85
543 555 3.609853 ACTGCGTGAATGTCATGGTTAT 58.390 40.909 0.00 0.00 34.08 1.89
603 615 5.483937 TCATGACATGGTTGTAACTCTAGGT 59.516 40.000 15.37 0.00 35.79 3.08
611 623 6.461640 TGGTTGTAACTCTAGGTAAAGAAGC 58.538 40.000 0.00 0.00 0.00 3.86
657 674 7.439108 AGATGGTAATAGTAACCTCTTGCTT 57.561 36.000 0.00 0.00 37.91 3.91
658 675 7.275920 AGATGGTAATAGTAACCTCTTGCTTG 58.724 38.462 0.00 0.00 37.91 4.01
691 708 8.488651 AAATGGTAATAGTAACCTCGACTTTG 57.511 34.615 0.00 0.00 37.91 2.77
712 1569 2.168936 GGCCCATGCATTCTCAAAATGA 59.831 45.455 0.00 0.00 40.13 2.57
714 1571 4.255301 GCCCATGCATTCTCAAAATGAAA 58.745 39.130 0.00 0.00 37.47 2.69
776 1636 4.338012 TCTGACACTTGATTTCATGGCAT 58.662 39.130 0.00 0.00 0.00 4.40
926 1792 5.235516 TCGAGGATGTTTGTAGGAGAAAAC 58.764 41.667 0.00 0.00 36.92 2.43
1125 2027 2.419739 GGGCTCGTCTCAGGAGGTC 61.420 68.421 0.00 0.00 31.23 3.85
1128 2030 2.045242 TCGTCTCAGGAGGTCCCG 60.045 66.667 0.00 0.00 40.87 5.14
1173 2075 6.182507 TGGATACTACAAAACCAACAGACT 57.817 37.500 0.00 0.00 37.61 3.24
1209 2112 0.247460 TTGCTCACATGGACTCCTCG 59.753 55.000 0.00 0.00 0.00 4.63
1224 2127 1.071471 CTCGGTCAACAAGGCCACT 59.929 57.895 5.01 0.00 44.49 4.00
1225 2128 1.227823 TCGGTCAACAAGGCCACTG 60.228 57.895 5.01 4.04 44.49 3.66
1351 2257 8.397906 TGCTAATGTTGTTTTACTATCTCATGC 58.602 33.333 0.00 0.00 0.00 4.06
1370 2276 7.940137 TCTCATGCTTTTAAGTTTACAAGGGTA 59.060 33.333 0.00 0.00 0.00 3.69
1474 2380 7.418368 GCTGCTCCTATAGGCTTCAATATCATA 60.418 40.741 14.50 0.00 34.44 2.15
1561 2467 1.345741 GATGGGATTCTGCATCTCCGA 59.654 52.381 0.00 0.00 29.90 4.55
1668 2638 4.466726 TCTTTTCCTGCCTAGTTCTAGGAC 59.533 45.833 24.82 17.17 38.96 3.85
1798 2775 7.176515 TGCCTTTTGAAAGTATTTATGAGAGCA 59.823 33.333 3.09 0.00 39.27 4.26
1844 2878 6.452494 AGAGTATCACACATGTACTACCAC 57.548 41.667 0.00 0.00 37.82 4.16
1908 2947 4.095483 AGACTTGCTGCGGATAAATCTTTG 59.905 41.667 0.00 0.00 0.00 2.77
1980 3019 9.177608 CTATTGGACTGGAATGAAGTTATGAAA 57.822 33.333 0.00 0.00 0.00 2.69
2109 3148 1.620822 AGTTTGATGGTTCAGGTGGC 58.379 50.000 0.00 0.00 32.27 5.01
2111 3150 2.375174 AGTTTGATGGTTCAGGTGGCTA 59.625 45.455 0.00 0.00 32.27 3.93
2114 3153 3.737559 TGATGGTTCAGGTGGCTATTT 57.262 42.857 0.00 0.00 0.00 1.40
2115 3154 3.355378 TGATGGTTCAGGTGGCTATTTG 58.645 45.455 0.00 0.00 0.00 2.32
2129 3169 6.454795 GTGGCTATTTGTTTTCCTTTCATGA 58.545 36.000 0.00 0.00 0.00 3.07
2261 3310 5.755849 TCTTGAAAAGGTTGGGATATCTCC 58.244 41.667 0.00 1.77 46.24 3.71
2265 3314 4.684484 AAAGGTTGGGATATCTCCGTAC 57.316 45.455 0.00 4.03 43.11 3.67
2313 3362 5.338381 CCTGGACATGACATACAGGTACTTT 60.338 44.000 18.19 0.00 43.59 2.66
2430 3524 4.979564 AATCATGCTCGATGTATCAACG 57.020 40.909 0.00 0.00 33.29 4.10
2741 4205 7.466804 AGTTATTGGTCAGGGAAGTTATTGAA 58.533 34.615 0.00 0.00 0.00 2.69
2748 4212 6.294564 GGTCAGGGAAGTTATTGAAGGAAAAC 60.295 42.308 0.00 0.00 0.00 2.43
2752 4216 8.462016 CAGGGAAGTTATTGAAGGAAAACATAG 58.538 37.037 0.00 0.00 0.00 2.23
2759 4223 9.788960 GTTATTGAAGGAAAACATAGTTCATCC 57.211 33.333 6.58 6.58 0.00 3.51
2763 4227 7.405292 TGAAGGAAAACATAGTTCATCCTGAT 58.595 34.615 14.23 4.32 37.37 2.90
2862 4334 8.085909 ACCAGGTTACAATTTATGTTTACTTGC 58.914 33.333 0.00 0.00 43.63 4.01
2904 4384 6.069381 AGGTGGAGTATGCTCTTAAATTTCCT 60.069 38.462 10.82 4.82 41.38 3.36
2970 4453 6.337356 TGAAAACTTTGATTTGAGTGGTTCC 58.663 36.000 0.00 0.00 0.00 3.62
2985 4468 2.076863 GGTTCCCAGATGTTGAAGACG 58.923 52.381 0.00 0.00 0.00 4.18
3073 4570 3.916761 TGAGCATCAACTTCATTTTGGC 58.083 40.909 0.00 0.00 45.97 4.52
3082 4579 3.157087 ACTTCATTTTGGCGAATCAGGT 58.843 40.909 0.00 0.00 0.00 4.00
3083 4580 3.573967 ACTTCATTTTGGCGAATCAGGTT 59.426 39.130 0.00 0.00 0.00 3.50
3117 4614 5.598416 ACCAAGATATTTTAGCTTTGGCC 57.402 39.130 9.03 0.00 39.73 5.36
3144 4641 6.118170 TGAAGATTTCACCATCTCTCAATCC 58.882 40.000 0.00 0.00 31.87 3.01
3389 4897 7.732222 TTCATGGGCCAAAAATTCTATACTT 57.268 32.000 11.89 0.00 0.00 2.24
3452 4960 7.726216 CAAGGGAAGAATTAGAAAACCTTGTT 58.274 34.615 10.97 0.00 45.24 2.83
3463 4971 6.937436 AGAAAACCTTGTTGAACTAATCGT 57.063 33.333 0.00 0.00 0.00 3.73
3572 5081 7.793927 GCTTCTGCTTCATTTTATAGGTAGT 57.206 36.000 0.00 0.00 36.03 2.73
3573 5082 7.634522 GCTTCTGCTTCATTTTATAGGTAGTG 58.365 38.462 0.00 0.00 36.03 2.74
3574 5083 7.281100 GCTTCTGCTTCATTTTATAGGTAGTGT 59.719 37.037 0.00 0.00 36.03 3.55
3577 5086 8.946085 TCTGCTTCATTTTATAGGTAGTGTTTG 58.054 33.333 0.00 0.00 0.00 2.93
3580 5089 8.512138 GCTTCATTTTATAGGTAGTGTTTGTGT 58.488 33.333 0.00 0.00 0.00 3.72
3719 5229 3.252215 CCATTTACACTTCAACGAGCCAA 59.748 43.478 0.00 0.00 0.00 4.52
3751 5261 3.357203 TGGCTTCTGTTGTACAAAACCA 58.643 40.909 10.51 5.81 0.00 3.67
3762 5272 5.163302 TGTACAAAACCATGACGTCAAAG 57.837 39.130 24.13 18.61 0.00 2.77
3776 5286 3.440872 ACGTCAAAGAGCACCTAGTAGAG 59.559 47.826 0.00 0.00 0.00 2.43
3791 5301 6.012683 ACCTAGTAGAGACAGTGAGTTTCCTA 60.013 42.308 0.00 0.00 31.94 2.94
3793 5303 5.883180 AGTAGAGACAGTGAGTTTCCTACT 58.117 41.667 0.00 0.00 40.71 2.57
3807 5317 5.244178 AGTTTCCTACTCGTCTGTCAGATTT 59.756 40.000 5.68 0.00 28.23 2.17
3877 5392 7.371936 GCTACAACTACTAAGGACTATGATGG 58.628 42.308 0.00 0.00 0.00 3.51
3885 5400 1.373497 GACTATGATGGCCGAGGCG 60.373 63.158 8.14 0.00 43.06 5.52
3969 5484 1.951209 TCACAGTGGCTCCCATTCTA 58.049 50.000 0.00 0.00 35.28 2.10
3975 5490 1.048724 TGGCTCCCATTCTACTCCCG 61.049 60.000 0.00 0.00 0.00 5.14
3992 5507 3.625853 TCCCGGCATCATATTTTGTCAA 58.374 40.909 0.00 0.00 0.00 3.18
3997 5512 5.045215 CGGCATCATATTTTGTCAAGCAAT 58.955 37.500 0.00 0.00 36.89 3.56
4005 5520 9.230122 TCATATTTTGTCAAGCAATCACTCTTA 57.770 29.630 0.00 0.00 36.89 2.10
4120 5635 0.251742 TCAACCCCCTTCATGGCTTG 60.252 55.000 0.00 0.00 0.00 4.01
4145 5660 7.971722 TGAAGTTAGTGTTTTTCAAGGTTTAGC 59.028 33.333 0.00 0.00 0.00 3.09
4152 5667 6.923508 GTGTTTTTCAAGGTTTAGCATAGCTT 59.076 34.615 0.00 0.00 40.44 3.74
4198 5714 3.751479 TGGCTTCACATATCGCTACAT 57.249 42.857 0.00 0.00 0.00 2.29
4259 5784 4.220602 GGCACCAAAGTAATCCTCACAAAT 59.779 41.667 0.00 0.00 0.00 2.32
4364 5890 8.825745 GTTTGCTTTGGAAGTTTGATTCATTTA 58.174 29.630 0.00 0.00 0.00 1.40
4370 5896 9.974980 TTTGGAAGTTTGATTCATTTAACTACC 57.025 29.630 3.32 0.00 31.06 3.18
4371 5897 8.698973 TGGAAGTTTGATTCATTTAACTACCA 57.301 30.769 3.32 0.00 31.06 3.25
4392 5918 9.617523 CTACCATTTATGCATCATGTATATCCA 57.382 33.333 0.19 0.00 0.00 3.41
4393 5919 8.515695 ACCATTTATGCATCATGTATATCCAG 57.484 34.615 0.19 0.00 0.00 3.86
4403 5929 7.094677 GCATCATGTATATCCAGTTGTGCATAA 60.095 37.037 0.00 0.00 0.00 1.90
4580 6109 4.020573 TGACGGTTCTATGTCCATTGAAGT 60.021 41.667 4.72 1.62 34.28 3.01
4617 6146 2.355010 AAAGGTCCATAGCCTCATGC 57.645 50.000 0.00 0.00 41.71 4.06
4630 6159 3.830755 AGCCTCATGCAGAAAAGATTTGT 59.169 39.130 0.00 0.00 44.83 2.83
4830 6359 4.944962 TCCATCTTTTGCTGTACAATCG 57.055 40.909 0.00 0.00 38.31 3.34
4882 6411 5.048504 CCATTTTCATATGCATTAGCCGACT 60.049 40.000 3.54 0.00 41.13 4.18
4953 6482 5.578157 ACAAATACTAGTTGGGTTCTGGT 57.422 39.130 0.00 0.00 0.00 4.00
4957 6486 1.493022 ACTAGTTGGGTTCTGGTTGCA 59.507 47.619 0.00 0.00 0.00 4.08
4975 6504 5.355071 GGTTGCACTGATCTGAACATTCATA 59.645 40.000 6.60 0.00 36.46 2.15
5028 6557 5.048573 AGTTCGTGTCTCTTCTCTAAAGGTC 60.049 44.000 0.00 0.00 0.00 3.85
5035 6564 5.066764 GTCTCTTCTCTAAAGGTCGTGCTAT 59.933 44.000 0.00 0.00 0.00 2.97
5059 6588 4.275689 TCTCAGCATTTGTACTTGTTGGTG 59.724 41.667 0.00 3.34 37.20 4.17
5070 6599 7.171630 TGTACTTGTTGGTGGTACAATTTTT 57.828 32.000 0.00 0.00 44.16 1.94
5095 6624 4.371624 TCTTGGTCCACATCATTTCTGT 57.628 40.909 0.00 0.00 0.00 3.41
5134 6663 3.797331 TGGCAGGACCAGTCTCTG 58.203 61.111 10.26 10.26 46.36 3.35
5135 6664 1.152247 TGGCAGGACCAGTCTCTGT 60.152 57.895 13.98 0.00 46.36 3.41
5192 6721 7.502226 TCAAATCAACTAACAATGGACAAGACT 59.498 33.333 0.00 0.00 0.00 3.24
5249 6779 8.538701 TGACAAAATATTATGTGAGGCCAAAAT 58.461 29.630 5.01 0.00 0.00 1.82
5298 6828 1.619827 CAAGGGCACAACCATCACAAT 59.380 47.619 0.00 0.00 42.05 2.71
5319 6849 2.996249 TGCAACCAAAAGAAATGCCA 57.004 40.000 0.00 0.00 36.20 4.92
5339 6869 3.003068 CCATCAAGATGAAGACGCATTCC 59.997 47.826 11.48 0.00 41.20 3.01
5354 6886 8.128322 AGACGCATTCCTAGATCTATTACAAT 57.872 34.615 2.11 0.00 0.00 2.71
5355 6887 8.031864 AGACGCATTCCTAGATCTATTACAATG 58.968 37.037 2.11 9.91 0.00 2.82
5364 6896 7.595502 CCTAGATCTATTACAATGAACGTGGTC 59.404 40.741 2.11 0.00 0.00 4.02
5385 6917 7.860872 GTGGTCGTTTGTATTTCATTTCTTCTT 59.139 33.333 0.00 0.00 0.00 2.52
5391 6923 6.677781 TGTATTTCATTTCTTCTTAGCCGG 57.322 37.500 0.00 0.00 0.00 6.13
5400 6936 2.573609 TTCTTAGCCGGCGCTCTTCC 62.574 60.000 23.20 0.00 43.95 3.46
5402 6938 2.962697 CTTAGCCGGCGCTCTTCCTC 62.963 65.000 23.20 0.00 43.95 3.71
5426 6962 5.938438 AAGAGAAAGCACTCACTGAAATC 57.062 39.130 0.00 0.00 39.14 2.17
5440 6976 7.180051 ACTCACTGAAATCCTTACTGAATCTCT 59.820 37.037 0.00 0.00 0.00 3.10
5441 6977 7.911651 TCACTGAAATCCTTACTGAATCTCTT 58.088 34.615 0.00 0.00 0.00 2.85
5442 6978 9.035890 TCACTGAAATCCTTACTGAATCTCTTA 57.964 33.333 0.00 0.00 0.00 2.10
5443 6979 9.658799 CACTGAAATCCTTACTGAATCTCTTAA 57.341 33.333 0.00 0.00 0.00 1.85
5617 7176 3.512496 CCCCTACCTTCTCTTCCTATCC 58.488 54.545 0.00 0.00 0.00 2.59
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.669265 GGTGCCTAGGTTGCGTATTTC 59.331 52.381 11.31 0.00 0.00 2.17
3 4 0.178068 CAGGTGCCTAGGTTGCGTAT 59.822 55.000 11.31 0.00 0.00 3.06
5 6 2.347490 CAGGTGCCTAGGTTGCGT 59.653 61.111 11.31 0.00 0.00 5.24
6 7 3.127533 GCAGGTGCCTAGGTTGCG 61.128 66.667 11.31 0.00 34.31 4.85
7 8 3.127533 CGCAGGTGCCTAGGTTGC 61.128 66.667 11.31 13.88 37.91 4.17
8 9 3.127533 GCGCAGGTGCCTAGGTTG 61.128 66.667 11.31 5.58 37.91 3.77
19 20 2.526120 GCTTAACCTAGCGCGCAGG 61.526 63.158 33.47 33.47 39.25 4.85
20 21 1.358725 TTGCTTAACCTAGCGCGCAG 61.359 55.000 35.10 25.95 44.18 5.18
21 22 0.742990 ATTGCTTAACCTAGCGCGCA 60.743 50.000 35.10 18.19 44.18 6.09
22 23 1.214367 TATTGCTTAACCTAGCGCGC 58.786 50.000 26.66 26.66 44.18 6.86
23 24 7.646526 TGTATATATATTGCTTAACCTAGCGCG 59.353 37.037 0.00 0.00 44.18 6.86
60 61 7.571798 GCGTACTAGGTTAGCTAGATCTCTTTC 60.572 44.444 23.09 0.00 0.00 2.62
95 100 3.485877 GCTTGATGCGTCTAAATGGACAC 60.486 47.826 7.58 0.00 36.12 3.67
116 121 1.159285 GGCCAATGGAAAAGCAAAGC 58.841 50.000 2.05 0.00 0.00 3.51
124 129 0.396060 GTTTGCCTGGCCAATGGAAA 59.604 50.000 17.53 15.07 0.00 3.13
140 145 4.379652 ACATGGAAAACTACGTACGGTTT 58.620 39.130 21.06 17.18 37.26 3.27
153 158 2.625790 CCTTCGGGTTTGACATGGAAAA 59.374 45.455 0.00 0.00 0.00 2.29
281 286 3.435671 GGTGGTTTCTTCGGTCATTGTAG 59.564 47.826 0.00 0.00 0.00 2.74
282 287 3.404899 GGTGGTTTCTTCGGTCATTGTA 58.595 45.455 0.00 0.00 0.00 2.41
302 307 2.945890 GCCAATACCAAGTCCAAGAGGG 60.946 54.545 0.00 0.00 34.83 4.30
311 316 1.282157 GAGGTGAGGCCAATACCAAGT 59.718 52.381 20.81 4.85 40.61 3.16
335 346 1.679153 GGAGGAGGAAGACGATGACTC 59.321 57.143 0.00 0.00 0.00 3.36
349 360 0.841289 AGTCGAGTAGAGGGGAGGAG 59.159 60.000 0.00 0.00 0.00 3.69
382 393 6.055588 CCAATACATAAAGGAACCATCGTCT 58.944 40.000 0.00 0.00 0.00 4.18
397 408 3.199677 GGTGCACGCTTACCAATACATA 58.800 45.455 11.45 0.00 36.94 2.29
473 485 3.063452 CACTATGGCACCGATGTTGTTAC 59.937 47.826 0.00 0.00 0.00 2.50
483 495 5.989168 TCTTACATTTATCACTATGGCACCG 59.011 40.000 0.00 0.00 0.00 4.94
629 646 8.639761 GCAAGAGGTTACTATTACCATCTTAGA 58.360 37.037 0.00 0.00 38.16 2.10
668 685 6.579865 CCAAAGTCGAGGTTACTATTACCAT 58.420 40.000 0.00 0.00 38.16 3.55
691 708 2.168936 TCATTTTGAGAATGCATGGGCC 59.831 45.455 0.00 0.00 40.13 5.80
838 1704 7.861872 CACAAATCAATTAACACATCACTCACA 59.138 33.333 0.00 0.00 0.00 3.58
902 1768 5.677319 TTTCTCCTACAAACATCCTCGAT 57.323 39.130 0.00 0.00 0.00 3.59
903 1769 5.235516 GTTTTCTCCTACAAACATCCTCGA 58.764 41.667 0.00 0.00 33.75 4.04
971 1851 2.209690 TATGACAGACACGAGACCCA 57.790 50.000 0.00 0.00 0.00 4.51
1173 2075 2.852449 AGCAAGACCCCAAGATCCATTA 59.148 45.455 0.00 0.00 0.00 1.90
1209 2112 0.179018 AGACAGTGGCCTTGTTGACC 60.179 55.000 13.57 2.97 0.00 4.02
1224 2127 1.059098 AAGCCAGTGTGGATGAGACA 58.941 50.000 0.00 0.00 40.96 3.41
1225 2128 1.271054 ACAAGCCAGTGTGGATGAGAC 60.271 52.381 0.00 0.00 40.96 3.36
1341 2247 9.994432 CCTTGTAAACTTAAAAGCATGAGATAG 57.006 33.333 0.00 0.00 28.57 2.08
1343 2249 7.451566 ACCCTTGTAAACTTAAAAGCATGAGAT 59.548 33.333 0.00 0.00 28.57 2.75
1349 2255 8.466617 TCAATACCCTTGTAAACTTAAAAGCA 57.533 30.769 0.00 0.00 28.57 3.91
1350 2256 9.353999 CATCAATACCCTTGTAAACTTAAAAGC 57.646 33.333 0.00 0.00 28.57 3.51
1351 2257 9.353999 GCATCAATACCCTTGTAAACTTAAAAG 57.646 33.333 0.00 0.00 0.00 2.27
1403 2309 6.779115 GGAGACGTTTTTGCCAATAAAATT 57.221 33.333 0.00 0.00 30.39 1.82
1474 2380 4.210331 CAAGGCTAAGCATACCAGGAAAT 58.790 43.478 0.00 0.00 0.00 2.17
1561 2467 6.002653 ACAAACCTTTCTAGTTCCAACTCT 57.997 37.500 0.00 0.00 40.37 3.24
1635 2605 7.104290 ACTAGGCAGGAAAAGAAATAGTACAC 58.896 38.462 0.00 0.00 0.00 2.90
1768 2745 9.696917 CTCATAAATACTTTCAAAAGGCAAACT 57.303 29.630 7.37 0.00 40.31 2.66
1829 2863 2.823924 TTGCGTGGTAGTACATGTGT 57.176 45.000 9.11 0.00 0.00 3.72
1844 2878 7.775397 AAGGATATTTGAAAATTCCATTGCG 57.225 32.000 10.79 0.00 32.65 4.85
1908 2947 2.763448 AGCGATATATGCTTCTCTCCCC 59.237 50.000 0.00 0.00 40.48 4.81
2114 3153 7.754924 GCGAATTCTTATCATGAAAGGAAAACA 59.245 33.333 0.00 0.00 0.00 2.83
2115 3154 7.754924 TGCGAATTCTTATCATGAAAGGAAAAC 59.245 33.333 0.00 3.02 0.00 2.43
2129 3169 4.634443 GTGTACACCCTTGCGAATTCTTAT 59.366 41.667 15.42 0.00 0.00 1.73
2418 3512 3.344852 CATTGCACACGTTGATACATCG 58.655 45.455 0.00 0.00 33.50 3.84
2430 3524 0.236187 TACGAAACGCCATTGCACAC 59.764 50.000 0.00 0.00 37.32 3.82
2479 3573 1.298859 CTGCACAAGGAAGTACCCGC 61.299 60.000 0.00 0.00 40.05 6.13
2557 4017 9.717892 CAACTCATCTACATCAGATTGAAATTG 57.282 33.333 0.00 0.00 41.49 2.32
2604 4068 7.687941 TCCTTGAAGTGAATTATGGAAAGTC 57.312 36.000 0.00 0.00 0.00 3.01
2649 4113 7.333528 TGAAGCCTTGTACAATTCCATTATC 57.666 36.000 9.13 1.42 0.00 1.75
2758 4222 2.002586 CGACCTACTTTGCACATCAGG 58.997 52.381 0.00 0.00 0.00 3.86
2759 4223 2.959516 TCGACCTACTTTGCACATCAG 58.040 47.619 0.00 0.00 0.00 2.90
2763 4227 4.188462 CCAATATCGACCTACTTTGCACA 58.812 43.478 0.00 0.00 0.00 4.57
2862 4334 8.980481 ACTCCACCTGAAATTATAAAGGTATG 57.020 34.615 6.31 2.64 41.14 2.39
2904 4384 4.704540 AGACGATCCATTGTGGCATAAAAA 59.295 37.500 0.00 0.00 37.47 1.94
2970 4453 2.480419 GTGTTCCGTCTTCAACATCTGG 59.520 50.000 0.00 0.00 35.05 3.86
2985 4468 6.990939 AGAAGTAAAACTCTTACCAGTGTTCC 59.009 38.462 0.00 0.00 36.01 3.62
3073 4570 6.072948 TGGTTTACACAACATAACCTGATTCG 60.073 38.462 0.00 0.00 40.50 3.34
3117 4614 6.997239 TGAGAGATGGTGAAATCTTCAATG 57.003 37.500 0.00 0.00 42.15 2.82
3144 4641 3.318017 CTGGAGTTCACTCTGGTAAACG 58.682 50.000 6.91 0.00 42.48 3.60
3452 4960 8.771920 ACAAATCATACTTCACGATTAGTTCA 57.228 30.769 0.00 0.00 0.00 3.18
3492 5000 7.331026 TCAGTGGTCCTAAGAAAGAACATATG 58.669 38.462 0.00 0.00 31.13 1.78
3554 5063 8.512138 ACACAAACACTACCTATAAAATGAAGC 58.488 33.333 0.00 0.00 0.00 3.86
3567 5076 5.065988 ACAAGACATCAACACAAACACTACC 59.934 40.000 0.00 0.00 0.00 3.18
3568 5077 6.119144 ACAAGACATCAACACAAACACTAC 57.881 37.500 0.00 0.00 0.00 2.73
3569 5078 5.006261 CGACAAGACATCAACACAAACACTA 59.994 40.000 0.00 0.00 0.00 2.74
3570 5079 4.201812 CGACAAGACATCAACACAAACACT 60.202 41.667 0.00 0.00 0.00 3.55
3571 5080 4.028383 CGACAAGACATCAACACAAACAC 58.972 43.478 0.00 0.00 0.00 3.32
3572 5081 3.687212 ACGACAAGACATCAACACAAACA 59.313 39.130 0.00 0.00 0.00 2.83
3573 5082 4.273005 ACGACAAGACATCAACACAAAC 57.727 40.909 0.00 0.00 0.00 2.93
3574 5083 4.955925 AACGACAAGACATCAACACAAA 57.044 36.364 0.00 0.00 0.00 2.83
3577 5086 4.795970 AGAAACGACAAGACATCAACAC 57.204 40.909 0.00 0.00 0.00 3.32
3580 5089 6.912203 TTGTTAGAAACGACAAGACATCAA 57.088 33.333 0.00 0.00 32.43 2.57
3719 5229 2.949447 ACAGAAGCCATTGTTCCAAGT 58.051 42.857 0.00 0.00 0.00 3.16
3751 5261 2.563179 ACTAGGTGCTCTTTGACGTCAT 59.437 45.455 20.80 3.20 0.00 3.06
3762 5272 3.611970 TCACTGTCTCTACTAGGTGCTC 58.388 50.000 0.00 0.00 0.00 4.26
3791 5301 4.592485 ACTCAAAATCTGACAGACGAGT 57.408 40.909 7.47 13.70 0.00 4.18
3793 5303 6.677781 AAAAACTCAAAATCTGACAGACGA 57.322 33.333 7.47 1.71 0.00 4.20
3885 5400 1.972872 ATTGTCTCATCCGCCAATCC 58.027 50.000 0.00 0.00 0.00 3.01
3969 5484 3.214328 GACAAAATATGATGCCGGGAGT 58.786 45.455 2.18 0.00 0.00 3.85
3975 5490 6.019318 GTGATTGCTTGACAAAATATGATGCC 60.019 38.462 0.00 0.00 42.86 4.40
3992 5507 4.013267 ACACAAGCTAAGAGTGATTGCT 57.987 40.909 13.35 0.00 37.05 3.91
3997 5512 6.204688 CCATTTACAACACAAGCTAAGAGTGA 59.795 38.462 13.35 0.00 37.05 3.41
4005 5520 4.887071 TCTTGACCATTTACAACACAAGCT 59.113 37.500 0.00 0.00 35.00 3.74
4120 5635 7.971722 TGCTAAACCTTGAAAAACACTAACTTC 59.028 33.333 0.00 0.00 0.00 3.01
4126 5641 6.265422 AGCTATGCTAAACCTTGAAAAACACT 59.735 34.615 0.00 0.00 36.99 3.55
4131 5646 7.049799 ACAAAGCTATGCTAAACCTTGAAAA 57.950 32.000 7.60 0.00 38.25 2.29
4171 5686 6.042638 AGCGATATGTGAAGCCATATAAGT 57.957 37.500 0.00 0.00 37.97 2.24
4173 5688 6.930731 TGTAGCGATATGTGAAGCCATATAA 58.069 36.000 0.00 0.00 37.97 0.98
4315 5840 9.571816 AAACATGGGATTTATTTTCACAATGTT 57.428 25.926 0.00 0.00 33.58 2.71
4316 5841 9.001542 CAAACATGGGATTTATTTTCACAATGT 57.998 29.630 0.00 0.00 28.63 2.71
4317 5842 7.964011 GCAAACATGGGATTTATTTTCACAATG 59.036 33.333 0.00 0.00 28.63 2.82
4318 5843 7.884354 AGCAAACATGGGATTTATTTTCACAAT 59.116 29.630 0.00 0.00 28.63 2.71
4370 5896 9.783256 CAACTGGATATACATGATGCATAAATG 57.217 33.333 16.59 16.59 0.00 2.32
4371 5897 9.524496 ACAACTGGATATACATGATGCATAAAT 57.476 29.630 0.00 0.00 0.00 1.40
4386 5912 9.797642 TCTTATCAATTATGCACAACTGGATAT 57.202 29.630 0.00 0.00 31.34 1.63
4521 6050 5.118203 ACGTAGCGAAACACTATCAAGTTTC 59.882 40.000 7.72 7.72 46.17 2.78
4580 6109 9.747898 TGGACCTTTTTATTGAATCTTTAGCTA 57.252 29.630 0.00 0.00 0.00 3.32
4599 6128 1.142465 CTGCATGAGGCTATGGACCTT 59.858 52.381 0.00 0.00 45.15 3.50
4617 6146 6.923508 GGACCAACCTTAACAAATCTTTTCTG 59.076 38.462 0.00 0.00 35.41 3.02
4763 6292 5.528690 GGCTCATTGATAACTGCATTCACTA 59.471 40.000 0.00 0.00 0.00 2.74
4882 6411 6.239458 CCTTTTATTTTTGAAGGGTGTGCCTA 60.239 38.462 0.00 0.00 37.00 3.93
4891 6420 8.752187 TCATCTCATCCCTTTTATTTTTGAAGG 58.248 33.333 0.00 0.00 39.69 3.46
4934 6463 4.202524 TGCAACCAGAACCCAACTAGTATT 60.203 41.667 0.00 0.00 0.00 1.89
4953 6482 7.415877 CCAATATGAATGTTCAGATCAGTGCAA 60.416 37.037 3.61 0.00 38.09 4.08
4957 6486 6.544931 CACCCAATATGAATGTTCAGATCAGT 59.455 38.462 3.61 0.42 38.09 3.41
5035 6564 4.887071 ACCAACAAGTACAAATGCTGAGAA 59.113 37.500 0.00 0.00 0.00 2.87
5059 6588 7.175990 TGTGGACCAAGATAGAAAAATTGTACC 59.824 37.037 0.00 0.00 0.00 3.34
5070 6599 6.070021 ACAGAAATGATGTGGACCAAGATAGA 60.070 38.462 0.00 0.00 0.00 1.98
5117 6646 1.152247 ACAGAGACTGGTCCTGCCA 60.152 57.895 14.50 0.00 46.95 4.92
5118 6647 1.294780 CACAGAGACTGGTCCTGCC 59.705 63.158 14.50 0.00 35.51 4.85
5120 6649 1.543802 GAGACACAGAGACTGGTCCTG 59.456 57.143 13.58 13.58 34.55 3.86
5121 6650 1.427368 AGAGACACAGAGACTGGTCCT 59.573 52.381 12.83 9.19 34.55 3.85
5122 6651 1.543802 CAGAGACACAGAGACTGGTCC 59.456 57.143 12.83 0.00 34.55 4.46
5124 6653 2.373335 ACAGAGACACAGAGACTGGT 57.627 50.000 0.00 0.00 35.51 4.00
5125 6654 2.160615 CGTACAGAGACACAGAGACTGG 59.839 54.545 0.00 0.00 35.51 4.00
5127 6656 2.038689 TCCGTACAGAGACACAGAGACT 59.961 50.000 0.00 0.00 0.00 3.24
5129 6658 2.853235 TCCGTACAGAGACACAGAGA 57.147 50.000 0.00 0.00 0.00 3.10
5130 6659 3.275143 AGATCCGTACAGAGACACAGAG 58.725 50.000 0.00 0.00 0.00 3.35
5131 6660 3.351794 AGATCCGTACAGAGACACAGA 57.648 47.619 0.00 0.00 0.00 3.41
5132 6661 3.191581 ACAAGATCCGTACAGAGACACAG 59.808 47.826 0.00 0.00 0.00 3.66
5133 6662 3.154710 ACAAGATCCGTACAGAGACACA 58.845 45.455 0.00 0.00 0.00 3.72
5134 6663 3.851976 ACAAGATCCGTACAGAGACAC 57.148 47.619 0.00 0.00 0.00 3.67
5135 6664 4.038763 ACAAACAAGATCCGTACAGAGACA 59.961 41.667 0.00 0.00 0.00 3.41
5223 6752 7.473735 TTTGGCCTCACATAATATTTTGTCA 57.526 32.000 3.32 1.91 0.00 3.58
5277 6807 0.184692 TGTGATGGTTGTGCCCTTGA 59.815 50.000 0.00 0.00 36.04 3.02
5281 6811 2.481795 GCATATTGTGATGGTTGTGCCC 60.482 50.000 0.00 0.00 36.04 5.36
5298 6828 4.613925 TGGCATTTCTTTTGGTTGCATA 57.386 36.364 0.00 0.00 35.04 3.14
5319 6849 4.148128 AGGAATGCGTCTTCATCTTGAT 57.852 40.909 2.33 0.00 0.00 2.57
5339 6869 7.323895 CGACCACGTTCATTGTAATAGATCTAG 59.676 40.741 8.70 0.00 34.56 2.43
5364 6896 7.216317 CGGCTAAGAAGAAATGAAATACAAACG 59.784 37.037 0.00 0.00 0.00 3.60
5400 6936 4.375272 TCAGTGAGTGCTTTCTCTTTGAG 58.625 43.478 0.00 0.00 35.68 3.02
5402 6938 5.490139 TTTCAGTGAGTGCTTTCTCTTTG 57.510 39.130 0.00 4.84 35.68 2.77
5403 6939 5.240403 GGATTTCAGTGAGTGCTTTCTCTTT 59.760 40.000 0.00 0.00 35.68 2.52
5442 6978 9.696917 AAATTCTTGTCGCAAAGAGAAATAATT 57.303 25.926 0.82 0.00 37.48 1.40
5443 6979 9.696917 AAAATTCTTGTCGCAAAGAGAAATAAT 57.303 25.926 0.82 0.00 37.48 1.28
5444 6980 9.528018 AAAAATTCTTGTCGCAAAGAGAAATAA 57.472 25.926 0.82 0.00 37.48 1.40
5472 7008 1.603172 CCTCTAATCGACCGGACATGC 60.603 57.143 9.46 0.00 0.00 4.06
5595 7154 3.512496 GATAGGAAGAGAAGGTAGGGGG 58.488 54.545 0.00 0.00 0.00 5.40
5617 7176 5.105917 ACAACAATGTCCCGCCTTTTTATAG 60.106 40.000 0.00 0.00 33.41 1.31
5666 7227 3.018856 CCTCAAATTGATGGCACTGCTA 58.981 45.455 0.00 0.00 0.00 3.49
5692 7253 8.949421 AGAATATATAACATGTCTTTGGGGAGT 58.051 33.333 0.00 0.00 0.00 3.85
5813 7375 4.461992 AAAATGTTGGTACACGAGTTCG 57.538 40.909 0.00 0.00 39.29 3.95


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.