Multiple sequence alignment - TraesCS2B01G449200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G449200 chr2B 100.000 4789 0 0 1 4789 641939326 641944114 0.000000e+00 8844
1 TraesCS2B01G449200 chr2A 88.840 1586 97 32 2 1555 681243844 681245381 0.000000e+00 1875
2 TraesCS2B01G449200 chr2A 92.143 1120 42 12 2312 3386 681246118 681247236 0.000000e+00 1539
3 TraesCS2B01G449200 chr2A 91.071 784 37 6 3422 4203 681247342 681248094 0.000000e+00 1029
4 TraesCS2B01G449200 chr2A 89.134 589 52 6 4201 4789 4762899 4763475 0.000000e+00 723
5 TraesCS2B01G449200 chr2A 89.938 487 23 10 1571 2044 681245360 681245833 5.300000e-169 604
6 TraesCS2B01G449200 chr2A 86.207 116 5 5 2110 2225 681245840 681245944 1.090000e-21 115
7 TraesCS2B01G449200 chr2D 91.773 1337 62 25 2113 3409 538797871 538799199 0.000000e+00 1816
8 TraesCS2B01G449200 chr2D 87.477 1605 131 35 1 1555 538795784 538797368 0.000000e+00 1786
9 TraesCS2B01G449200 chr2D 94.501 782 37 3 3429 4207 538799289 538800067 0.000000e+00 1201
10 TraesCS2B01G449200 chr2D 93.473 429 16 6 1571 1988 538797348 538797775 1.130000e-175 627
11 TraesCS2B01G449200 chrUn 90.738 583 48 2 4207 4789 163851 164427 0.000000e+00 773
12 TraesCS2B01G449200 chrUn 86.723 595 65 10 4200 4789 41350309 41350894 0.000000e+00 649
13 TraesCS2B01G449200 chr1D 90.738 583 48 2 4207 4789 18763585 18764161 0.000000e+00 773
14 TraesCS2B01G449200 chr1D 84.746 118 14 4 60 173 200731548 200731431 1.090000e-21 115
15 TraesCS2B01G449200 chr7D 90.427 585 48 5 4207 4789 503935379 503935957 0.000000e+00 763
16 TraesCS2B01G449200 chr1B 89.880 583 50 1 4207 4789 642155256 642154683 0.000000e+00 741
17 TraesCS2B01G449200 chr3A 88.144 582 55 6 4210 4789 26849900 26849331 0.000000e+00 680
18 TraesCS2B01G449200 chr1A 87.952 581 56 7 4210 4789 509706362 509705795 0.000000e+00 673
19 TraesCS2B01G449200 chr1A 87.952 581 56 7 4210 4789 509779627 509779060 0.000000e+00 673
20 TraesCS2B01G449200 chr3D 82.883 111 17 2 43 152 275754478 275754369 1.100000e-16 99


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G449200 chr2B 641939326 641944114 4788 False 8844.0 8844 100.0000 1 4789 1 chr2B.!!$F1 4788
1 TraesCS2B01G449200 chr2A 681243844 681248094 4250 False 1032.4 1875 89.6398 2 4203 5 chr2A.!!$F2 4201
2 TraesCS2B01G449200 chr2A 4762899 4763475 576 False 723.0 723 89.1340 4201 4789 1 chr2A.!!$F1 588
3 TraesCS2B01G449200 chr2D 538795784 538800067 4283 False 1357.5 1816 91.8060 1 4207 4 chr2D.!!$F1 4206
4 TraesCS2B01G449200 chrUn 163851 164427 576 False 773.0 773 90.7380 4207 4789 1 chrUn.!!$F1 582
5 TraesCS2B01G449200 chrUn 41350309 41350894 585 False 649.0 649 86.7230 4200 4789 1 chrUn.!!$F2 589
6 TraesCS2B01G449200 chr1D 18763585 18764161 576 False 773.0 773 90.7380 4207 4789 1 chr1D.!!$F1 582
7 TraesCS2B01G449200 chr7D 503935379 503935957 578 False 763.0 763 90.4270 4207 4789 1 chr7D.!!$F1 582
8 TraesCS2B01G449200 chr1B 642154683 642155256 573 True 741.0 741 89.8800 4207 4789 1 chr1B.!!$R1 582
9 TraesCS2B01G449200 chr3A 26849331 26849900 569 True 680.0 680 88.1440 4210 4789 1 chr3A.!!$R1 579
10 TraesCS2B01G449200 chr1A 509705795 509706362 567 True 673.0 673 87.9520 4210 4789 1 chr1A.!!$R1 579
11 TraesCS2B01G449200 chr1A 509779060 509779627 567 True 673.0 673 87.9520 4210 4789 1 chr1A.!!$R2 579

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
395 404 0.036010 CGGCAATCACCTCCTTGACT 60.036 55.0 0.00 0.0 0.00 3.41 F
450 459 0.105453 TGGTAGGGAGGAGATGAGGC 60.105 60.0 0.00 0.0 0.00 4.70 F
2099 2205 0.038310 GATTACCCCCTGGCCTATGC 59.962 60.0 3.32 0.0 33.59 3.14 F
2310 2454 0.449388 GCTGCCAGCACAGATTGTAC 59.551 55.0 12.82 0.0 41.89 2.90 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2080 2186 0.038310 GCATAGGCCAGGGGGTAATC 59.962 60.000 5.01 0.0 36.17 1.75 R
2105 2211 0.179045 ATCAACCAGGCTCGTATGGC 60.179 55.000 0.00 0.0 40.45 4.40 R
3558 3886 0.942962 GATGAATCAGCCTGGAAGCG 59.057 55.000 0.00 0.0 38.01 4.68 R
4203 4534 1.482593 CGGGGTCTGCTAGAGATGTTT 59.517 52.381 0.00 0.0 31.63 2.83 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 27 2.880268 TGTCGTCGAAAGAGTTCCAGTA 59.120 45.455 0.00 0.00 43.49 2.74
29 31 4.458295 TCGTCGAAAGAGTTCCAGTATTCT 59.542 41.667 0.00 0.00 43.49 2.40
46 48 2.708216 TCTGGACTGAAGTTGCACAA 57.292 45.000 0.00 0.00 0.00 3.33
89 92 7.009179 TGATAGGAAAATAGACCATGGCTAG 57.991 40.000 13.04 0.00 0.00 3.42
90 93 6.558775 TGATAGGAAAATAGACCATGGCTAGT 59.441 38.462 13.04 10.79 0.00 2.57
95 98 4.679373 AATAGACCATGGCTAGTGTCTG 57.321 45.455 13.04 0.00 38.46 3.51
140 143 8.980596 TGCACTTGGGATTTCATCTAAATATTT 58.019 29.630 5.89 5.89 37.93 1.40
173 177 2.289444 ACCAGCACGCTACTATGTGTTT 60.289 45.455 0.00 0.00 38.36 2.83
174 178 3.056393 ACCAGCACGCTACTATGTGTTTA 60.056 43.478 0.00 0.00 38.36 2.01
179 185 4.150980 GCACGCTACTATGTGTTTACAACA 59.849 41.667 0.00 0.00 40.84 3.33
195 201 1.541147 CAACATTGTGGGAGATGCGTT 59.459 47.619 0.00 0.00 0.00 4.84
200 206 3.410631 TTGTGGGAGATGCGTTCTAAA 57.589 42.857 0.00 0.00 33.74 1.85
212 218 4.460263 TGCGTTCTAAAGGCATATCCAAT 58.540 39.130 3.17 0.00 46.15 3.16
247 253 2.829120 TCCGACACACTATCCATTCACA 59.171 45.455 0.00 0.00 0.00 3.58
250 256 4.635765 CCGACACACTATCCATTCACAAAT 59.364 41.667 0.00 0.00 0.00 2.32
252 258 6.483307 CCGACACACTATCCATTCACAAATAT 59.517 38.462 0.00 0.00 0.00 1.28
260 266 5.895636 TCCATTCACAAATATGTCCACAC 57.104 39.130 0.00 0.00 37.82 3.82
261 267 5.320277 TCCATTCACAAATATGTCCACACA 58.680 37.500 0.00 0.00 37.82 3.72
262 268 5.182950 TCCATTCACAAATATGTCCACACAC 59.817 40.000 0.00 0.00 37.82 3.82
310 319 5.514834 CCAACCCTGTTCCTCAAGATTTAGA 60.515 44.000 0.00 0.00 0.00 2.10
356 365 2.123251 GAGGGGGAGAGATCGGCA 60.123 66.667 0.00 0.00 0.00 5.69
359 368 3.157252 GGGGAGAGATCGGCAGCA 61.157 66.667 0.00 0.00 0.00 4.41
389 398 0.740737 CATTTCCGGCAATCACCTCC 59.259 55.000 0.00 0.00 0.00 4.30
395 404 0.036010 CGGCAATCACCTCCTTGACT 60.036 55.000 0.00 0.00 0.00 3.41
409 418 0.546122 TTGACTTCCATATGCCGCCT 59.454 50.000 0.00 0.00 0.00 5.52
412 421 0.255890 ACTTCCATATGCCGCCTGTT 59.744 50.000 0.00 0.00 0.00 3.16
416 425 1.168407 CCATATGCCGCCTGTTCCAG 61.168 60.000 0.00 0.00 0.00 3.86
450 459 0.105453 TGGTAGGGAGGAGATGAGGC 60.105 60.000 0.00 0.00 0.00 4.70
469 481 2.717044 CCGCCTCGACCATGTACCA 61.717 63.158 0.00 0.00 0.00 3.25
531 545 0.250901 AGCATGTCAAGAAACCGGCT 60.251 50.000 0.00 0.00 0.00 5.52
532 546 1.003118 AGCATGTCAAGAAACCGGCTA 59.997 47.619 0.00 0.00 0.00 3.93
555 569 5.055265 TGGAAGAAAAACCAGTCCACATA 57.945 39.130 0.00 0.00 33.43 2.29
678 707 4.496341 CCACAAATGCTACAATCATCGACC 60.496 45.833 0.00 0.00 0.00 4.79
679 708 4.333649 CACAAATGCTACAATCATCGACCT 59.666 41.667 0.00 0.00 0.00 3.85
680 709 4.333649 ACAAATGCTACAATCATCGACCTG 59.666 41.667 0.00 0.00 0.00 4.00
681 710 4.406648 AATGCTACAATCATCGACCTGA 57.593 40.909 0.00 0.00 0.00 3.86
682 711 3.443099 TGCTACAATCATCGACCTGAG 57.557 47.619 0.00 0.00 0.00 3.35
683 712 2.131183 GCTACAATCATCGACCTGAGC 58.869 52.381 0.00 0.00 0.00 4.26
684 713 2.481969 GCTACAATCATCGACCTGAGCA 60.482 50.000 0.00 0.00 0.00 4.26
685 714 2.306341 ACAATCATCGACCTGAGCAG 57.694 50.000 0.00 0.00 0.00 4.24
686 715 0.935898 CAATCATCGACCTGAGCAGC 59.064 55.000 0.00 0.00 0.00 5.25
687 716 0.538584 AATCATCGACCTGAGCAGCA 59.461 50.000 0.00 0.00 0.00 4.41
688 717 0.538584 ATCATCGACCTGAGCAGCAA 59.461 50.000 0.00 0.00 0.00 3.91
689 718 0.390340 TCATCGACCTGAGCAGCAAC 60.390 55.000 0.00 0.00 0.00 4.17
748 777 1.507141 CTTCCCACCACAAGTGTCGC 61.507 60.000 0.00 0.00 45.74 5.19
920 954 1.893801 TCTCGACCAAGTTTCTCCCTC 59.106 52.381 0.00 0.00 0.00 4.30
923 957 1.066787 CGACCAAGTTTCTCCCTCTCC 60.067 57.143 0.00 0.00 0.00 3.71
941 977 2.244769 CTCCCCTCTCTCTTTCTCTCCT 59.755 54.545 0.00 0.00 0.00 3.69
943 979 2.244769 CCCCTCTCTCTTTCTCTCCTCT 59.755 54.545 0.00 0.00 0.00 3.69
944 980 3.555966 CCCTCTCTCTTTCTCTCCTCTC 58.444 54.545 0.00 0.00 0.00 3.20
1219 1266 7.303261 TCTCCTTCAACGCGTATAGTTATATG 58.697 38.462 14.46 3.35 0.00 1.78
1220 1267 5.860182 TCCTTCAACGCGTATAGTTATATGC 59.140 40.000 14.46 11.59 44.04 3.14
1221 1268 5.862323 CCTTCAACGCGTATAGTTATATGCT 59.138 40.000 14.46 0.00 44.85 3.79
1222 1269 6.183359 CCTTCAACGCGTATAGTTATATGCTG 60.183 42.308 14.46 1.60 44.85 4.41
1223 1270 4.619760 TCAACGCGTATAGTTATATGCTGC 59.380 41.667 14.46 0.00 44.85 5.25
1228 1275 6.028368 CGCGTATAGTTATATGCTGCTACTT 58.972 40.000 16.94 0.00 44.85 2.24
1229 1276 6.527023 CGCGTATAGTTATATGCTGCTACTTT 59.473 38.462 16.94 0.00 44.85 2.66
1231 1278 8.709646 GCGTATAGTTATATGCTGCTACTTTTT 58.290 33.333 13.55 0.00 44.08 1.94
1262 1311 4.202305 TGTTTTGGGGGTGTTTGATTGATC 60.202 41.667 0.00 0.00 0.00 2.92
1328 1386 7.611213 ACTCGTAAAAATTCATCCGATTTCT 57.389 32.000 0.00 0.00 0.00 2.52
1351 1413 5.592054 TCTGCCAGAAATCGTTATCTACTG 58.408 41.667 0.00 0.00 0.00 2.74
1363 1440 5.359860 TCGTTATCTACTGCAATCAGAGGAA 59.640 40.000 0.00 0.00 42.95 3.36
1418 1495 7.286775 TGCTTTTCTTGTTGGTTAGGAGTTTAT 59.713 33.333 0.00 0.00 0.00 1.40
1460 1537 7.951030 CGGCGGTTAAATTAAATTTGGTAAAAC 59.049 33.333 0.00 0.61 33.82 2.43
1768 1868 4.102054 GTCTACTCCCAGTCTAGTCTAGCT 59.898 50.000 1.60 0.00 0.00 3.32
1776 1876 6.267471 TCCCAGTCTAGTCTAGCTACTACTAC 59.733 46.154 1.60 3.05 0.00 2.73
1777 1877 6.268387 CCCAGTCTAGTCTAGCTACTACTACT 59.732 46.154 1.60 4.82 0.00 2.57
1778 1878 7.451255 CCCAGTCTAGTCTAGCTACTACTACTA 59.549 44.444 1.60 2.65 28.82 1.82
1877 1980 2.414824 CGAAGGCTCCGTGCTCTATATC 60.415 54.545 0.00 0.00 42.39 1.63
1983 2089 4.226761 GGTCAATTCGTTCTCGCAAAAAT 58.773 39.130 0.00 0.00 36.96 1.82
1985 2091 5.508224 GGTCAATTCGTTCTCGCAAAAATAG 59.492 40.000 0.00 0.00 36.96 1.73
1987 2093 4.616181 ATTCGTTCTCGCAAAAATAGGG 57.384 40.909 0.00 0.00 36.96 3.53
1988 2094 3.322211 TCGTTCTCGCAAAAATAGGGA 57.678 42.857 0.00 0.00 36.96 4.20
1989 2095 2.997986 TCGTTCTCGCAAAAATAGGGAC 59.002 45.455 0.00 0.00 36.96 4.46
1990 2096 2.222729 CGTTCTCGCAAAAATAGGGACG 60.223 50.000 0.00 0.00 0.00 4.79
1991 2097 2.018542 TCTCGCAAAAATAGGGACGG 57.981 50.000 0.00 0.00 0.00 4.79
1992 2098 1.014352 CTCGCAAAAATAGGGACGGG 58.986 55.000 0.00 0.00 0.00 5.28
1993 2099 0.393267 TCGCAAAAATAGGGACGGGG 60.393 55.000 0.00 0.00 0.00 5.73
1994 2100 1.381165 CGCAAAAATAGGGACGGGGG 61.381 60.000 0.00 0.00 0.00 5.40
2050 2156 6.278363 TCTCATTAGTTACCATTTACGAGCC 58.722 40.000 0.00 0.00 0.00 4.70
2051 2157 6.097839 TCTCATTAGTTACCATTTACGAGCCT 59.902 38.462 0.00 0.00 0.00 4.58
2052 2158 6.046593 TCATTAGTTACCATTTACGAGCCTG 58.953 40.000 0.00 0.00 0.00 4.85
2053 2159 3.975168 AGTTACCATTTACGAGCCTGT 57.025 42.857 0.00 0.00 0.00 4.00
2054 2160 4.281898 AGTTACCATTTACGAGCCTGTT 57.718 40.909 0.00 0.00 0.00 3.16
2055 2161 4.648651 AGTTACCATTTACGAGCCTGTTT 58.351 39.130 0.00 0.00 0.00 2.83
2056 2162 4.454504 AGTTACCATTTACGAGCCTGTTTG 59.545 41.667 0.00 0.00 0.00 2.93
2057 2163 3.134574 ACCATTTACGAGCCTGTTTGA 57.865 42.857 0.00 0.00 0.00 2.69
2058 2164 3.686016 ACCATTTACGAGCCTGTTTGAT 58.314 40.909 0.00 0.00 0.00 2.57
2059 2165 4.079253 ACCATTTACGAGCCTGTTTGATT 58.921 39.130 0.00 0.00 0.00 2.57
2060 2166 4.522789 ACCATTTACGAGCCTGTTTGATTT 59.477 37.500 0.00 0.00 0.00 2.17
2062 2168 5.925969 CCATTTACGAGCCTGTTTGATTTTT 59.074 36.000 0.00 0.00 0.00 1.94
2088 2194 3.542648 CTTCGAAAAGGAGGATTACCCC 58.457 50.000 0.00 0.00 36.73 4.95
2089 2195 1.841919 TCGAAAAGGAGGATTACCCCC 59.158 52.381 0.00 0.00 36.73 5.40
2090 2196 1.844497 CGAAAAGGAGGATTACCCCCT 59.156 52.381 0.00 0.00 37.24 4.79
2093 2199 0.994050 AAGGAGGATTACCCCCTGGC 60.994 60.000 0.00 0.00 36.23 4.85
2095 2201 1.386057 GAGGATTACCCCCTGGCCT 60.386 63.158 3.32 0.00 36.73 5.19
2096 2202 0.104620 GAGGATTACCCCCTGGCCTA 60.105 60.000 3.32 0.00 36.73 3.93
2097 2203 0.578435 AGGATTACCCCCTGGCCTAT 59.422 55.000 3.32 0.00 36.73 2.57
2098 2204 0.698818 GGATTACCCCCTGGCCTATG 59.301 60.000 3.32 0.00 33.59 2.23
2099 2205 0.038310 GATTACCCCCTGGCCTATGC 59.962 60.000 3.32 0.00 33.59 3.14
2100 2206 0.700963 ATTACCCCCTGGCCTATGCA 60.701 55.000 3.32 0.00 40.13 3.96
2101 2207 1.641552 TTACCCCCTGGCCTATGCAC 61.642 60.000 3.32 0.00 40.13 4.57
2102 2208 2.849071 TACCCCCTGGCCTATGCACA 62.849 60.000 3.32 0.00 40.13 4.57
2103 2209 2.124151 CCCCTGGCCTATGCACAC 60.124 66.667 3.32 0.00 40.13 3.82
2104 2210 2.124151 CCCTGGCCTATGCACACC 60.124 66.667 3.32 0.00 40.13 4.16
2105 2211 2.514592 CCTGGCCTATGCACACCG 60.515 66.667 3.32 0.00 40.13 4.94
2106 2212 3.204827 CTGGCCTATGCACACCGC 61.205 66.667 3.32 0.00 40.13 5.68
2107 2213 4.794648 TGGCCTATGCACACCGCC 62.795 66.667 3.32 8.58 41.33 6.13
2108 2214 4.794648 GGCCTATGCACACCGCCA 62.795 66.667 10.24 0.00 41.33 5.69
2171 2285 8.892723 TGTGAATCTATTGCGTTTTTCAGATAT 58.107 29.630 0.00 0.00 0.00 1.63
2251 2386 8.177119 TCCTGCACTAAACATATTGTTTCTTT 57.823 30.769 8.76 0.00 46.61 2.52
2252 2387 8.081633 TCCTGCACTAAACATATTGTTTCTTTG 58.918 33.333 8.76 6.55 46.61 2.77
2253 2388 7.329226 CCTGCACTAAACATATTGTTTCTTTGG 59.671 37.037 8.76 3.26 46.61 3.28
2255 2390 7.014711 TGCACTAAACATATTGTTTCTTTGGGA 59.985 33.333 8.76 0.00 46.61 4.37
2256 2391 7.870445 GCACTAAACATATTGTTTCTTTGGGAA 59.130 33.333 8.76 0.00 46.61 3.97
2261 2396 9.492973 AAACATATTGTTTCTTTGGGAAATGAG 57.507 29.630 0.00 0.00 46.61 2.90
2262 2397 8.421249 ACATATTGTTTCTTTGGGAAATGAGA 57.579 30.769 0.00 0.00 44.46 3.27
2309 2453 2.858622 GCTGCCAGCACAGATTGTA 58.141 52.632 12.82 0.00 41.89 2.41
2310 2454 0.449388 GCTGCCAGCACAGATTGTAC 59.551 55.000 12.82 0.00 41.89 2.90
2323 2530 6.293955 GCACAGATTGTACAGTAAAACACCAT 60.294 38.462 0.00 0.00 0.00 3.55
2324 2531 7.648142 CACAGATTGTACAGTAAAACACCATT 58.352 34.615 0.00 0.00 0.00 3.16
2347 2554 6.542574 TTTTTGGCATGCTCTTTTATGTTG 57.457 33.333 18.92 0.00 0.00 3.33
2377 2584 6.607004 TTTTCCTTTTGTTGGTCCTGTTTA 57.393 33.333 0.00 0.00 0.00 2.01
2381 2588 4.306600 CTTTTGTTGGTCCTGTTTATGGC 58.693 43.478 0.00 0.00 0.00 4.40
2393 2600 5.045213 TCCTGTTTATGGCCAGTCTGAATAA 60.045 40.000 13.05 0.00 0.00 1.40
2499 2727 1.887707 GGGGCGGAGTAAGCAATCG 60.888 63.158 0.00 0.00 36.08 3.34
2708 2936 8.951243 ACTCAAAGAGGTATTTTGCTCTTAATC 58.049 33.333 0.00 0.00 35.40 1.75
2717 2947 7.970614 GGTATTTTGCTCTTAATCTTGGTTCTG 59.029 37.037 0.00 0.00 0.00 3.02
2748 2988 5.819379 TCCTGCAATATCAGAAGTGTTGATC 59.181 40.000 0.00 0.00 36.68 2.92
3217 3472 4.696479 ACTCTTTGACTTGATGACAGGT 57.304 40.909 0.00 0.00 39.00 4.00
3283 3538 1.555075 GGTGACCATAGCCTCAAGACA 59.445 52.381 0.00 0.00 0.00 3.41
3391 3646 9.933723 TGGAAGGTTTGTACTATAACTTCTTAC 57.066 33.333 15.12 8.81 0.00 2.34
3392 3647 9.933723 GGAAGGTTTGTACTATAACTTCTTACA 57.066 33.333 15.12 0.00 0.00 2.41
3396 3651 8.929746 GGTTTGTACTATAACTTCTTACACACC 58.070 37.037 0.00 0.00 36.72 4.16
3397 3652 9.480053 GTTTGTACTATAACTTCTTACACACCA 57.520 33.333 0.00 0.00 0.00 4.17
3421 3685 5.963176 TTCTTGCATTGTTCTCATGCTTA 57.037 34.783 6.46 0.00 41.52 3.09
3422 3686 5.300969 TCTTGCATTGTTCTCATGCTTAC 57.699 39.130 6.46 0.00 41.52 2.34
3423 3687 4.156556 TCTTGCATTGTTCTCATGCTTACC 59.843 41.667 6.46 0.00 41.52 2.85
3424 3688 3.689347 TGCATTGTTCTCATGCTTACCT 58.311 40.909 6.46 0.00 41.52 3.08
3425 3689 3.691118 TGCATTGTTCTCATGCTTACCTC 59.309 43.478 6.46 0.00 41.52 3.85
3427 3691 3.350219 TTGTTCTCATGCTTACCTCCC 57.650 47.619 0.00 0.00 0.00 4.30
3435 3760 5.428457 TCTCATGCTTACCTCCCTTTCATTA 59.572 40.000 0.00 0.00 0.00 1.90
3509 3836 5.184479 ACATCATCATTTGGTTGGAGTTCTG 59.816 40.000 0.00 0.00 0.00 3.02
3517 3844 2.087646 GGTTGGAGTTCTGCATCTTCC 58.912 52.381 0.00 0.00 0.00 3.46
3527 3854 4.090761 TCTGCATCTTCCAGTTTCTTGT 57.909 40.909 0.00 0.00 0.00 3.16
3529 3856 4.516698 TCTGCATCTTCCAGTTTCTTGTTC 59.483 41.667 0.00 0.00 0.00 3.18
3568 3896 2.481471 GCATAACCCGCTTCCAGGC 61.481 63.158 0.00 0.00 0.00 4.85
3586 3914 6.899089 TCCAGGCTGATTCATCTGTATTTAA 58.101 36.000 17.94 0.00 0.00 1.52
3611 3939 6.432162 ACAGCTCTGTTATGTTCACAAATCAT 59.568 34.615 0.00 0.00 41.83 2.45
3626 3954 6.211184 TCACAAATCATTTCCTAAACCTGCAT 59.789 34.615 0.00 0.00 0.00 3.96
3698 4026 1.070289 GTGAAGTCGACAAAGGACCCT 59.930 52.381 19.50 0.00 34.97 4.34
3885 4213 7.112122 TGCTCCAGATTGAAATTATGTAGTGT 58.888 34.615 0.00 0.00 0.00 3.55
3928 4256 0.888285 AGCTGTGAACAGGCTTGAGC 60.888 55.000 12.20 0.00 43.94 4.26
4080 4408 3.185797 GTGGAACATCTCGTTTGTGTACC 59.814 47.826 0.00 0.00 44.52 3.34
4203 4534 6.266558 TGCAGCCTATTTCCTTGTTTTCTTAA 59.733 34.615 0.00 0.00 0.00 1.85
4248 4579 3.034343 GCGACCCGTATAAGGCGC 61.034 66.667 12.27 12.27 40.68 6.53
4291 4622 3.115892 GCGGGTCGAAATCGTGCA 61.116 61.111 2.41 0.00 40.80 4.57
4308 4639 0.324943 GCAAGGCAGAGTAGAACCCA 59.675 55.000 0.00 0.00 0.00 4.51
4411 4744 8.837788 TCATTCATAGTTCATCATCACATACC 57.162 34.615 0.00 0.00 0.00 2.73
4521 4856 2.496899 ACCAAAATGGACGAGCTCAT 57.503 45.000 15.40 0.00 40.96 2.90
4591 4929 3.634448 GAGATCGATGAACTTCTCCCTCA 59.366 47.826 0.54 0.00 30.61 3.86
4670 5008 1.147824 CCGCCTGCTTGAGGATGAT 59.852 57.895 0.00 0.00 46.33 2.45
4677 5015 3.370209 CCTGCTTGAGGATGATGTCTTCA 60.370 47.826 0.00 0.00 46.33 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 27 3.213206 TGTGCAACTTCAGTCCAGAAT 57.787 42.857 0.00 0.00 38.04 2.40
29 31 4.734398 AAAATTGTGCAACTTCAGTCCA 57.266 36.364 0.00 0.00 38.04 4.02
34 36 7.566760 TCTCTCTAAAAATTGTGCAACTTCA 57.433 32.000 0.00 0.00 38.04 3.02
35 37 8.856490 TTTCTCTCTAAAAATTGTGCAACTTC 57.144 30.769 0.00 0.00 38.04 3.01
79 82 2.260822 AGTTCAGACACTAGCCATGGT 58.739 47.619 14.67 2.69 0.00 3.55
83 86 1.416030 TGCAAGTTCAGACACTAGCCA 59.584 47.619 0.00 0.00 0.00 4.75
89 92 5.643777 AGTATATGGTTGCAAGTTCAGACAC 59.356 40.000 0.00 0.00 0.00 3.67
90 93 5.804639 AGTATATGGTTGCAAGTTCAGACA 58.195 37.500 0.00 0.00 0.00 3.41
173 177 2.290008 ACGCATCTCCCACAATGTTGTA 60.290 45.455 0.00 0.00 39.91 2.41
174 178 1.167851 CGCATCTCCCACAATGTTGT 58.832 50.000 0.00 0.00 43.36 3.32
179 185 3.627395 TTAGAACGCATCTCCCACAAT 57.373 42.857 0.00 0.00 39.71 2.71
195 201 3.411446 CGCCATTGGATATGCCTTTAGA 58.589 45.455 6.95 0.00 37.63 2.10
200 206 0.478072 TTCCGCCATTGGATATGCCT 59.522 50.000 6.95 0.00 38.00 4.75
217 223 0.865769 AGTGTGTCGGATTTGCGTTC 59.134 50.000 0.00 0.00 0.00 3.95
228 234 5.801350 ATTTGTGAATGGATAGTGTGTCG 57.199 39.130 0.00 0.00 0.00 4.35
247 253 2.811431 CCGTGTGTGTGTGGACATATTT 59.189 45.455 0.00 0.00 33.63 1.40
250 256 1.041437 TCCGTGTGTGTGTGGACATA 58.959 50.000 0.00 0.00 33.63 2.29
252 258 1.041437 TATCCGTGTGTGTGTGGACA 58.959 50.000 0.00 0.00 32.33 4.02
260 266 1.929169 CAGCTCATGTATCCGTGTGTG 59.071 52.381 0.00 0.00 0.00 3.82
261 267 1.134699 CCAGCTCATGTATCCGTGTGT 60.135 52.381 0.00 0.00 0.00 3.72
262 268 1.575244 CCAGCTCATGTATCCGTGTG 58.425 55.000 0.00 0.00 0.00 3.82
332 341 0.252012 ATCTCTCCCCCTCATAGGCG 60.252 60.000 0.00 0.00 32.73 5.52
359 368 4.456806 GGAAATGCCGAGCGGTAT 57.543 55.556 10.94 8.80 42.39 2.73
372 381 0.404040 AAGGAGGTGATTGCCGGAAA 59.596 50.000 5.05 0.00 0.00 3.13
373 382 0.322456 CAAGGAGGTGATTGCCGGAA 60.322 55.000 5.05 0.00 0.00 4.30
389 398 0.947244 GGCGGCATATGGAAGTCAAG 59.053 55.000 3.07 0.00 0.00 3.02
395 404 0.465460 GGAACAGGCGGCATATGGAA 60.465 55.000 13.08 0.00 0.00 3.53
409 418 5.536161 CCATTTTCTTTCCTTCTCTGGAACA 59.464 40.000 0.00 0.00 44.83 3.18
412 421 5.324832 ACCATTTTCTTTCCTTCTCTGGA 57.675 39.130 0.00 0.00 0.00 3.86
416 425 5.816682 TCCCTACCATTTTCTTTCCTTCTC 58.183 41.667 0.00 0.00 0.00 2.87
450 459 2.106332 GTACATGGTCGAGGCGGG 59.894 66.667 0.00 0.00 0.00 6.13
469 481 1.972660 GCACCGGTTGCCTCTCCTAT 61.973 60.000 2.97 0.00 46.63 2.57
531 545 5.055265 TGTGGACTGGTTTTTCTTCCATA 57.945 39.130 0.00 0.00 38.60 2.74
532 546 3.909732 TGTGGACTGGTTTTTCTTCCAT 58.090 40.909 0.00 0.00 38.60 3.41
561 575 3.572584 GCCGGCGTGGTATATATATAGC 58.427 50.000 12.58 20.37 41.21 2.97
678 707 0.882042 AGTCGTTGGTTGCTGCTCAG 60.882 55.000 0.00 0.00 0.00 3.35
679 708 0.880278 GAGTCGTTGGTTGCTGCTCA 60.880 55.000 0.00 0.00 0.00 4.26
680 709 1.569479 GGAGTCGTTGGTTGCTGCTC 61.569 60.000 0.00 0.00 0.00 4.26
681 710 1.598130 GGAGTCGTTGGTTGCTGCT 60.598 57.895 0.00 0.00 0.00 4.24
682 711 2.946762 GGAGTCGTTGGTTGCTGC 59.053 61.111 0.00 0.00 0.00 5.25
683 712 2.954753 GCGGAGTCGTTGGTTGCTG 61.955 63.158 0.00 0.00 38.89 4.41
684 713 2.665185 GCGGAGTCGTTGGTTGCT 60.665 61.111 0.00 0.00 38.89 3.91
685 714 2.665185 AGCGGAGTCGTTGGTTGC 60.665 61.111 0.00 0.00 38.89 4.17
686 715 2.027625 GGAGCGGAGTCGTTGGTTG 61.028 63.158 0.00 0.00 38.89 3.77
687 716 2.342648 GGAGCGGAGTCGTTGGTT 59.657 61.111 0.00 0.00 38.89 3.67
688 717 3.692406 GGGAGCGGAGTCGTTGGT 61.692 66.667 0.00 0.00 38.89 3.67
689 718 4.796231 CGGGAGCGGAGTCGTTGG 62.796 72.222 0.00 0.00 38.89 3.77
884 913 0.522180 GAGAAGACGAGACGAGGCAA 59.478 55.000 0.00 0.00 0.00 4.52
920 954 2.244769 AGGAGAGAAAGAGAGAGGGGAG 59.755 54.545 0.00 0.00 0.00 4.30
923 957 3.555966 GAGAGGAGAGAAAGAGAGAGGG 58.444 54.545 0.00 0.00 0.00 4.30
1068 1108 1.457455 GCAGGAGGAGGAGGAGGAG 60.457 68.421 0.00 0.00 0.00 3.69
1095 1138 1.038681 TGAGTATGTCGGGCCGCTTA 61.039 55.000 23.83 15.39 0.00 3.09
1237 1286 4.901849 TCAATCAAACACCCCCAAAACATA 59.098 37.500 0.00 0.00 0.00 2.29
1262 1311 2.481449 CCAAACCTCTCCTCCGTATTCG 60.481 54.545 0.00 0.00 0.00 3.34
1328 1386 5.592054 CAGTAGATAACGATTTCTGGCAGA 58.408 41.667 14.43 14.43 0.00 4.26
1351 1413 3.689346 GCTCGAAAATTCCTCTGATTGC 58.311 45.455 0.00 0.00 0.00 3.56
1363 1440 4.751060 TGTGGTACTAATCGCTCGAAAAT 58.249 39.130 0.00 0.00 0.00 1.82
1429 1506 3.655276 TTTAATTTAACCGCCGCCAAA 57.345 38.095 0.00 0.00 0.00 3.28
1460 1537 0.667993 TTGCAACTCTTTCTTGCCCG 59.332 50.000 0.00 0.00 42.91 6.13
1558 1641 6.628644 TTCTTTTCTTTTCCCCCTCAAAAA 57.371 33.333 0.00 0.00 0.00 1.94
1559 1642 6.628644 TTTCTTTTCTTTTCCCCCTCAAAA 57.371 33.333 0.00 0.00 0.00 2.44
1560 1643 6.628644 TTTTCTTTTCTTTTCCCCCTCAAA 57.371 33.333 0.00 0.00 0.00 2.69
1561 1644 6.628644 TTTTTCTTTTCTTTTCCCCCTCAA 57.371 33.333 0.00 0.00 0.00 3.02
1562 1645 6.823286 ATTTTTCTTTTCTTTTCCCCCTCA 57.177 33.333 0.00 0.00 0.00 3.86
1563 1646 9.793259 AATTATTTTTCTTTTCTTTTCCCCCTC 57.207 29.630 0.00 0.00 0.00 4.30
1768 1868 6.821616 AAGGCTAGTGGAGTAGTAGTAGTA 57.178 41.667 0.00 0.00 35.19 1.82
1776 1876 4.737855 TTGCTTAAGGCTAGTGGAGTAG 57.262 45.455 4.29 0.00 42.39 2.57
1777 1877 5.243207 GTTTTGCTTAAGGCTAGTGGAGTA 58.757 41.667 4.29 0.00 42.39 2.59
1778 1878 4.072839 GTTTTGCTTAAGGCTAGTGGAGT 58.927 43.478 4.29 0.00 42.39 3.85
1864 1967 6.662414 TTTTGAAACAGATATAGAGCACGG 57.338 37.500 0.00 0.00 0.00 4.94
1877 1980 6.203338 ACAATAAGCCAGCAATTTTGAAACAG 59.797 34.615 0.00 0.00 0.00 3.16
1926 2031 5.751586 TCAAAACTTACACCTTCCTCTGTT 58.248 37.500 0.00 0.00 0.00 3.16
1966 2072 4.094442 GTCCCTATTTTTGCGAGAACGAAT 59.906 41.667 0.00 0.00 42.66 3.34
1967 2073 3.434299 GTCCCTATTTTTGCGAGAACGAA 59.566 43.478 0.00 0.00 42.66 3.85
1969 2075 2.222729 CGTCCCTATTTTTGCGAGAACG 60.223 50.000 0.00 0.00 42.93 3.95
1991 2097 2.167729 AAACTGAACCCCCTCCCCC 61.168 63.158 0.00 0.00 0.00 5.40
1992 2098 1.076727 CAAACTGAACCCCCTCCCC 59.923 63.158 0.00 0.00 0.00 4.81
1993 2099 0.187606 AACAAACTGAACCCCCTCCC 59.812 55.000 0.00 0.00 0.00 4.30
1994 2100 2.374170 TCTAACAAACTGAACCCCCTCC 59.626 50.000 0.00 0.00 0.00 4.30
1995 2101 3.782656 TCTAACAAACTGAACCCCCTC 57.217 47.619 0.00 0.00 0.00 4.30
1996 2102 4.741928 AATCTAACAAACTGAACCCCCT 57.258 40.909 0.00 0.00 0.00 4.79
1997 2103 5.414765 CAGTAATCTAACAAACTGAACCCCC 59.585 44.000 0.00 0.00 41.47 5.40
1998 2104 6.235664 TCAGTAATCTAACAAACTGAACCCC 58.764 40.000 1.73 0.00 43.90 4.95
2065 2171 3.199289 GGGTAATCCTCCTTTTCGAAGGA 59.801 47.826 5.29 5.29 46.20 3.36
2066 2172 3.542648 GGGTAATCCTCCTTTTCGAAGG 58.457 50.000 0.00 0.00 41.35 3.46
2067 2173 3.542648 GGGGTAATCCTCCTTTTCGAAG 58.457 50.000 0.00 0.00 35.33 3.79
2077 2183 0.104620 TAGGCCAGGGGGTAATCCTC 60.105 60.000 5.01 0.00 36.17 3.71
2080 2186 0.038310 GCATAGGCCAGGGGGTAATC 59.962 60.000 5.01 0.00 36.17 1.75
2082 2188 1.308304 TGCATAGGCCAGGGGGTAA 60.308 57.895 5.01 0.00 40.13 2.85
2085 2191 3.419580 TGTGCATAGGCCAGGGGG 61.420 66.667 5.01 0.00 40.13 5.40
2086 2192 2.124151 GTGTGCATAGGCCAGGGG 60.124 66.667 5.01 0.00 40.13 4.79
2087 2193 2.124151 GGTGTGCATAGGCCAGGG 60.124 66.667 5.01 0.00 40.13 4.45
2088 2194 2.514592 CGGTGTGCATAGGCCAGG 60.515 66.667 5.01 0.00 40.13 4.45
2089 2195 3.204827 GCGGTGTGCATAGGCCAG 61.205 66.667 5.01 0.00 45.45 4.85
2098 2204 3.564027 GCTCGTATGGCGGTGTGC 61.564 66.667 0.00 0.00 45.38 4.57
2099 2205 2.890474 GGCTCGTATGGCGGTGTG 60.890 66.667 0.00 0.00 41.72 3.82
2100 2206 3.075005 AGGCTCGTATGGCGGTGT 61.075 61.111 0.00 0.00 41.72 4.16
2101 2207 2.586079 CAGGCTCGTATGGCGGTG 60.586 66.667 0.00 0.00 41.72 4.94
2102 2208 3.849951 CCAGGCTCGTATGGCGGT 61.850 66.667 0.00 0.00 41.72 5.68
2103 2209 3.385749 AACCAGGCTCGTATGGCGG 62.386 63.158 0.00 0.00 40.45 6.13
2104 2210 2.173669 CAACCAGGCTCGTATGGCG 61.174 63.158 0.00 0.00 40.45 5.69
2105 2211 0.179045 ATCAACCAGGCTCGTATGGC 60.179 55.000 0.00 0.00 40.45 4.40
2106 2212 1.138859 TCATCAACCAGGCTCGTATGG 59.861 52.381 0.00 0.00 42.60 2.74
2107 2213 2.477825 CTCATCAACCAGGCTCGTATG 58.522 52.381 0.00 0.00 0.00 2.39
2108 2214 1.202580 GCTCATCAACCAGGCTCGTAT 60.203 52.381 0.00 0.00 0.00 3.06
2195 2314 5.715439 AATGTCACAGATCCCAATCCTTA 57.285 39.130 0.00 0.00 31.78 2.69
2200 2319 6.268387 ACAAGAAAAATGTCACAGATCCCAAT 59.732 34.615 0.00 0.00 0.00 3.16
2251 2386 4.515191 CGAGACACTTTTTCTCATTTCCCA 59.485 41.667 0.65 0.00 39.71 4.37
2252 2387 4.755123 TCGAGACACTTTTTCTCATTTCCC 59.245 41.667 0.65 0.00 39.71 3.97
2253 2388 5.467063 ACTCGAGACACTTTTTCTCATTTCC 59.533 40.000 21.68 0.00 39.71 3.13
2255 2390 6.284459 AGACTCGAGACACTTTTTCTCATTT 58.716 36.000 21.68 0.00 39.71 2.32
2256 2391 5.848406 AGACTCGAGACACTTTTTCTCATT 58.152 37.500 21.68 0.00 39.71 2.57
2259 2394 3.909574 CGAGACTCGAGACACTTTTTCTC 59.090 47.826 21.68 16.20 43.74 2.87
2260 2395 3.564644 TCGAGACTCGAGACACTTTTTCT 59.435 43.478 23.27 8.62 44.82 2.52
2261 2396 3.886549 TCGAGACTCGAGACACTTTTTC 58.113 45.455 23.27 3.12 44.82 2.29
2262 2397 3.984508 TCGAGACTCGAGACACTTTTT 57.015 42.857 23.27 0.00 44.82 1.94
2324 2531 6.054295 ACAACATAAAAGAGCATGCCAAAAA 58.946 32.000 15.66 0.00 0.00 1.94
2347 2554 5.756347 GGACCAACAAAAGGAAAATGGTAAC 59.244 40.000 0.00 0.00 41.04 2.50
2377 2584 9.896645 CAGTATATTATTATTCAGACTGGCCAT 57.103 33.333 5.51 0.00 31.52 4.40
2412 2639 6.476380 GTCATACAGAGATCAGAGAAAGCAAG 59.524 42.308 0.00 0.00 0.00 4.01
2499 2727 1.672356 ATGCGTCACCTTGGTGCTC 60.672 57.895 14.49 9.20 0.00 4.26
3217 3472 1.472552 CCATTTACGCGAGGGACATCA 60.473 52.381 15.93 0.00 0.00 3.07
3283 3538 1.760613 TCAGGTTCCGAACTCAAGTGT 59.239 47.619 11.03 0.00 0.00 3.55
3386 3641 5.301551 ACAATGCAAGAAATGGTGTGTAAGA 59.698 36.000 0.00 0.00 0.00 2.10
3391 3646 4.624015 AGAACAATGCAAGAAATGGTGTG 58.376 39.130 0.00 0.00 0.00 3.82
3392 3647 4.341806 TGAGAACAATGCAAGAAATGGTGT 59.658 37.500 0.00 0.00 0.00 4.16
3393 3648 4.873817 TGAGAACAATGCAAGAAATGGTG 58.126 39.130 0.00 0.00 0.00 4.17
3396 3651 5.168569 AGCATGAGAACAATGCAAGAAATG 58.831 37.500 10.69 0.00 43.25 2.32
3397 3652 5.401531 AGCATGAGAACAATGCAAGAAAT 57.598 34.783 10.69 0.00 43.25 2.17
3421 3685 4.591321 TGAAGCATAATGAAAGGGAGGT 57.409 40.909 0.00 0.00 0.00 3.85
3422 3686 5.135383 TGATGAAGCATAATGAAAGGGAGG 58.865 41.667 0.00 0.00 0.00 4.30
3423 3687 5.826737 ACTGATGAAGCATAATGAAAGGGAG 59.173 40.000 0.00 0.00 0.00 4.30
3424 3688 5.759059 ACTGATGAAGCATAATGAAAGGGA 58.241 37.500 0.00 0.00 0.00 4.20
3425 3689 5.009410 GGACTGATGAAGCATAATGAAAGGG 59.991 44.000 0.00 0.00 0.00 3.95
3427 3691 6.939132 AGGACTGATGAAGCATAATGAAAG 57.061 37.500 0.00 0.00 0.00 2.62
3435 3760 7.472334 AAAAATACAAGGACTGATGAAGCAT 57.528 32.000 0.00 0.00 0.00 3.79
3486 3811 5.647589 CAGAACTCCAACCAAATGATGATG 58.352 41.667 0.00 0.00 0.00 3.07
3509 3836 4.836125 TGAACAAGAAACTGGAAGATGC 57.164 40.909 0.00 0.00 37.43 3.91
3554 3882 2.142292 AATCAGCCTGGAAGCGGGTT 62.142 55.000 0.00 0.00 38.01 4.11
3556 3884 1.821332 GAATCAGCCTGGAAGCGGG 60.821 63.158 0.00 0.00 38.01 6.13
3558 3886 0.942962 GATGAATCAGCCTGGAAGCG 59.057 55.000 0.00 0.00 38.01 4.68
3608 3936 5.441718 AGAGATGCAGGTTTAGGAAATGA 57.558 39.130 0.00 0.00 0.00 2.57
3611 3939 4.218417 GCAAAGAGATGCAGGTTTAGGAAA 59.782 41.667 0.00 0.00 45.70 3.13
3626 3954 5.649395 CACCTGGATTAATTCAGCAAAGAGA 59.351 40.000 17.23 0.00 0.00 3.10
3698 4026 3.359523 CGCTTTGCTGCTGCCTGA 61.360 61.111 13.47 0.00 38.71 3.86
3902 4230 5.186992 TCAAGCCTGTTCACAGCTACTATAA 59.813 40.000 1.01 0.00 42.47 0.98
3928 4256 4.201851 CGTCTTCCCATGCAATGTTCTAAG 60.202 45.833 0.00 0.00 44.81 2.18
4080 4408 6.101332 CCAATTTACCATCACAATCAACCAG 58.899 40.000 0.00 0.00 0.00 4.00
4116 4444 2.030363 TCAAAGCGCAACCTTAACATGG 60.030 45.455 11.47 0.00 0.00 3.66
4175 4506 2.440409 ACAAGGAAATAGGCTGCACAG 58.560 47.619 0.50 0.00 0.00 3.66
4203 4534 1.482593 CGGGGTCTGCTAGAGATGTTT 59.517 52.381 0.00 0.00 31.63 2.83
4291 4622 6.084738 TCATATATGGGTTCTACTCTGCCTT 58.915 40.000 12.78 0.00 0.00 4.35
4334 4666 1.200020 CAATTTCTCCCGTGAAGCACC 59.800 52.381 0.00 0.00 0.00 5.01
4498 4833 4.439057 TGAGCTCGTCCATTTTGGTATAC 58.561 43.478 9.64 0.00 39.03 1.47
4670 5008 0.241213 CGACGAGGAGCTTGAAGACA 59.759 55.000 0.00 0.00 0.00 3.41
4677 5015 4.421479 CGCCACGACGAGGAGCTT 62.421 66.667 15.98 0.00 34.06 3.74
4745 5083 2.092291 GTGGCTGATTTCGACGCGA 61.092 57.895 15.93 0.00 0.00 5.87
4758 5096 1.250840 GGCCCAAAGATTTCGTGGCT 61.251 55.000 0.00 0.00 38.89 4.75


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.