Multiple sequence alignment - TraesCS2B01G449100
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS2B01G449100 | chr2B | 100.000 | 5316 | 0 | 0 | 1 | 5316 | 641863625 | 641868940 | 0.000000e+00 | 9817 |
1 | TraesCS2B01G449100 | chr2D | 94.686 | 4573 | 144 | 25 | 218 | 4737 | 538726132 | 538730658 | 0.000000e+00 | 7007 |
2 | TraesCS2B01G449100 | chr2D | 86.989 | 538 | 30 | 16 | 4735 | 5262 | 538730701 | 538731208 | 2.150000e-158 | 569 |
3 | TraesCS2B01G449100 | chr2A | 96.608 | 3184 | 93 | 8 | 1502 | 4675 | 681192746 | 681195924 | 0.000000e+00 | 5267 |
4 | TraesCS2B01G449100 | chr2A | 87.919 | 1341 | 49 | 33 | 218 | 1503 | 681191226 | 681192508 | 0.000000e+00 | 1474 |
5 | TraesCS2B01G449100 | chr2A | 86.622 | 598 | 47 | 13 | 4734 | 5316 | 681196129 | 681196708 | 9.720000e-177 | 630 |
6 | TraesCS2B01G449100 | chr2A | 87.864 | 206 | 23 | 2 | 1 | 205 | 515945256 | 515945052 | 1.910000e-59 | 241 |
7 | TraesCS2B01G449100 | chr1B | 90.476 | 210 | 18 | 2 | 1 | 209 | 402944064 | 402943856 | 5.240000e-70 | 276 |
8 | TraesCS2B01G449100 | chr6B | 91.133 | 203 | 14 | 4 | 5 | 205 | 715319521 | 715319721 | 6.780000e-69 | 272 |
9 | TraesCS2B01G449100 | chr7A | 88.095 | 210 | 24 | 1 | 1 | 209 | 636191925 | 636192134 | 1.140000e-61 | 248 |
10 | TraesCS2B01G449100 | chr7A | 90.854 | 164 | 13 | 2 | 42 | 204 | 257367228 | 257367066 | 8.960000e-53 | 219 |
11 | TraesCS2B01G449100 | chr5D | 87.805 | 205 | 24 | 1 | 1 | 204 | 553884504 | 553884708 | 6.880000e-59 | 239 |
12 | TraesCS2B01G449100 | chr4D | 87.317 | 205 | 26 | 0 | 1 | 205 | 369637020 | 369637224 | 8.900000e-58 | 235 |
13 | TraesCS2B01G449100 | chr1D | 89.266 | 177 | 17 | 2 | 31 | 206 | 413829446 | 413829271 | 2.490000e-53 | 220 |
14 | TraesCS2B01G449100 | chr1D | 85.437 | 206 | 29 | 1 | 1 | 205 | 89116024 | 89115819 | 4.170000e-51 | 213 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS2B01G449100 | chr2B | 641863625 | 641868940 | 5315 | False | 9817 | 9817 | 100.0000 | 1 | 5316 | 1 | chr2B.!!$F1 | 5315 |
1 | TraesCS2B01G449100 | chr2D | 538726132 | 538731208 | 5076 | False | 3788 | 7007 | 90.8375 | 218 | 5262 | 2 | chr2D.!!$F1 | 5044 |
2 | TraesCS2B01G449100 | chr2A | 681191226 | 681196708 | 5482 | False | 2457 | 5267 | 90.3830 | 218 | 5316 | 3 | chr2A.!!$F1 | 5098 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
190 | 191 | 0.031616 | TTTCCCCTGCCCAACTGTTT | 60.032 | 50.000 | 0.0 | 0.0 | 0.00 | 2.83 | F |
192 | 193 | 0.111639 | TCCCCTGCCCAACTGTTTAC | 59.888 | 55.000 | 0.0 | 0.0 | 0.00 | 2.01 | F |
194 | 195 | 0.178975 | CCCTGCCCAACTGTTTACCA | 60.179 | 55.000 | 0.0 | 0.0 | 0.00 | 3.25 | F |
1300 | 1354 | 0.677731 | GCTGCCATCCTGCTTGTGTA | 60.678 | 55.000 | 0.0 | 0.0 | 35.71 | 2.90 | F |
1406 | 1461 | 2.141517 | GATCCCAACTCTCATGATGCG | 58.858 | 52.381 | 0.0 | 0.0 | 0.00 | 4.73 | F |
2528 | 2825 | 0.532573 | GACGAGTGGAGCTGGATTCA | 59.467 | 55.000 | 0.0 | 0.0 | 0.00 | 2.57 | F |
3787 | 4087 | 0.323629 | TTCCAGGGTCATTCGTGTCC | 59.676 | 55.000 | 0.0 | 0.0 | 0.00 | 4.02 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
1395 | 1450 | 0.247185 | TGTCTGCACGCATCATGAGA | 59.753 | 50.000 | 0.09 | 0.00 | 0.00 | 3.27 | R |
2052 | 2348 | 3.733337 | AGCTCCTATTAGCATTCCAACG | 58.267 | 45.455 | 0.00 | 0.00 | 45.30 | 4.10 | R |
2170 | 2466 | 4.155709 | TGCTAGATATCACCAAGAGGGAG | 58.844 | 47.826 | 5.32 | 0.00 | 41.15 | 4.30 | R |
2206 | 2502 | 1.207089 | CTGCGAGTGGAAACCAGGATA | 59.793 | 52.381 | 0.00 | 0.00 | 32.34 | 2.59 | R |
3046 | 3346 | 1.821216 | ACATGTCCGATTTCACCACC | 58.179 | 50.000 | 0.00 | 0.00 | 0.00 | 4.61 | R |
4267 | 4567 | 0.246635 | GCCTACAGCCTTTCGTCTCA | 59.753 | 55.000 | 0.00 | 0.00 | 34.35 | 3.27 | R |
4973 | 5443 | 0.031857 | CAGGCAGAGCTATCGTCCTG | 59.968 | 60.000 | 6.47 | 6.47 | 40.71 | 3.86 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
23 | 24 | 6.581171 | ATGAGAGTTGAGGAAACCAATTTC | 57.419 | 37.500 | 0.00 | 0.00 | 43.11 | 2.17 |
37 | 38 | 6.605471 | AACCAATTTCCACCTATTTCTTCC | 57.395 | 37.500 | 0.00 | 0.00 | 0.00 | 3.46 |
38 | 39 | 5.023452 | ACCAATTTCCACCTATTTCTTCCC | 58.977 | 41.667 | 0.00 | 0.00 | 0.00 | 3.97 |
39 | 40 | 5.022787 | CCAATTTCCACCTATTTCTTCCCA | 58.977 | 41.667 | 0.00 | 0.00 | 0.00 | 4.37 |
40 | 41 | 5.483583 | CCAATTTCCACCTATTTCTTCCCAA | 59.516 | 40.000 | 0.00 | 0.00 | 0.00 | 4.12 |
41 | 42 | 6.013812 | CCAATTTCCACCTATTTCTTCCCAAA | 60.014 | 38.462 | 0.00 | 0.00 | 0.00 | 3.28 |
42 | 43 | 6.857437 | ATTTCCACCTATTTCTTCCCAAAG | 57.143 | 37.500 | 0.00 | 0.00 | 0.00 | 2.77 |
43 | 44 | 4.316025 | TCCACCTATTTCTTCCCAAAGG | 57.684 | 45.455 | 0.00 | 0.00 | 33.03 | 3.11 |
44 | 45 | 3.920197 | TCCACCTATTTCTTCCCAAAGGA | 59.080 | 43.478 | 0.00 | 0.00 | 41.88 | 3.36 |
45 | 46 | 4.544152 | TCCACCTATTTCTTCCCAAAGGAT | 59.456 | 41.667 | 0.00 | 0.00 | 43.54 | 3.24 |
46 | 47 | 5.734140 | TCCACCTATTTCTTCCCAAAGGATA | 59.266 | 40.000 | 0.00 | 0.00 | 43.54 | 2.59 |
47 | 48 | 5.828328 | CCACCTATTTCTTCCCAAAGGATAC | 59.172 | 44.000 | 0.00 | 0.00 | 43.54 | 2.24 |
48 | 49 | 5.828328 | CACCTATTTCTTCCCAAAGGATACC | 59.172 | 44.000 | 0.00 | 0.00 | 43.54 | 2.73 |
49 | 50 | 5.103643 | ACCTATTTCTTCCCAAAGGATACCC | 60.104 | 44.000 | 0.00 | 0.00 | 43.54 | 3.69 |
51 | 52 | 4.316025 | TTTCTTCCCAAAGGATACCCTG | 57.684 | 45.455 | 0.00 | 0.00 | 43.48 | 4.45 |
52 | 53 | 2.929301 | TCTTCCCAAAGGATACCCTGT | 58.071 | 47.619 | 0.00 | 0.00 | 43.48 | 4.00 |
53 | 54 | 3.265489 | TCTTCCCAAAGGATACCCTGTT | 58.735 | 45.455 | 0.00 | 0.00 | 43.48 | 3.16 |
54 | 55 | 4.440808 | TCTTCCCAAAGGATACCCTGTTA | 58.559 | 43.478 | 0.00 | 0.00 | 43.48 | 2.41 |
55 | 56 | 4.853276 | TCTTCCCAAAGGATACCCTGTTAA | 59.147 | 41.667 | 0.00 | 0.00 | 43.48 | 2.01 |
56 | 57 | 5.494706 | TCTTCCCAAAGGATACCCTGTTAAT | 59.505 | 40.000 | 0.00 | 0.00 | 43.48 | 1.40 |
57 | 58 | 5.806955 | TCCCAAAGGATACCCTGTTAATT | 57.193 | 39.130 | 0.00 | 0.00 | 43.48 | 1.40 |
58 | 59 | 5.762279 | TCCCAAAGGATACCCTGTTAATTC | 58.238 | 41.667 | 0.00 | 0.00 | 43.48 | 2.17 |
59 | 60 | 4.578928 | CCCAAAGGATACCCTGTTAATTCG | 59.421 | 45.833 | 0.00 | 0.00 | 43.48 | 3.34 |
60 | 61 | 5.190677 | CCAAAGGATACCCTGTTAATTCGT | 58.809 | 41.667 | 0.00 | 0.00 | 43.48 | 3.85 |
61 | 62 | 5.065988 | CCAAAGGATACCCTGTTAATTCGTG | 59.934 | 44.000 | 0.00 | 0.00 | 43.48 | 4.35 |
62 | 63 | 5.687166 | AAGGATACCCTGTTAATTCGTGA | 57.313 | 39.130 | 0.00 | 0.00 | 43.48 | 4.35 |
63 | 64 | 5.277857 | AGGATACCCTGTTAATTCGTGAG | 57.722 | 43.478 | 0.00 | 0.00 | 42.42 | 3.51 |
64 | 65 | 3.808174 | GGATACCCTGTTAATTCGTGAGC | 59.192 | 47.826 | 0.00 | 0.00 | 0.00 | 4.26 |
65 | 66 | 2.851263 | ACCCTGTTAATTCGTGAGCA | 57.149 | 45.000 | 0.00 | 0.00 | 0.00 | 4.26 |
66 | 67 | 2.699954 | ACCCTGTTAATTCGTGAGCAG | 58.300 | 47.619 | 0.00 | 0.00 | 0.00 | 4.24 |
67 | 68 | 2.301870 | ACCCTGTTAATTCGTGAGCAGA | 59.698 | 45.455 | 0.00 | 0.00 | 0.00 | 4.26 |
68 | 69 | 3.244422 | ACCCTGTTAATTCGTGAGCAGAA | 60.244 | 43.478 | 0.00 | 0.00 | 0.00 | 3.02 |
69 | 70 | 3.941483 | CCCTGTTAATTCGTGAGCAGAAT | 59.059 | 43.478 | 0.00 | 0.00 | 39.75 | 2.40 |
70 | 71 | 4.396166 | CCCTGTTAATTCGTGAGCAGAATT | 59.604 | 41.667 | 8.84 | 8.84 | 46.36 | 2.17 |
71 | 72 | 5.106157 | CCCTGTTAATTCGTGAGCAGAATTT | 60.106 | 40.000 | 9.08 | 0.00 | 43.41 | 1.82 |
72 | 73 | 6.381801 | CCTGTTAATTCGTGAGCAGAATTTT | 58.618 | 36.000 | 9.08 | 0.00 | 43.41 | 1.82 |
73 | 74 | 7.361713 | CCCTGTTAATTCGTGAGCAGAATTTTA | 60.362 | 37.037 | 9.08 | 0.00 | 43.41 | 1.52 |
74 | 75 | 8.184192 | CCTGTTAATTCGTGAGCAGAATTTTAT | 58.816 | 33.333 | 9.08 | 0.00 | 43.41 | 1.40 |
75 | 76 | 9.214953 | CTGTTAATTCGTGAGCAGAATTTTATC | 57.785 | 33.333 | 9.08 | 1.10 | 43.41 | 1.75 |
76 | 77 | 8.181573 | TGTTAATTCGTGAGCAGAATTTTATCC | 58.818 | 33.333 | 9.08 | 0.00 | 43.41 | 2.59 |
77 | 78 | 5.757850 | ATTCGTGAGCAGAATTTTATCCC | 57.242 | 39.130 | 0.00 | 0.00 | 34.99 | 3.85 |
78 | 79 | 4.214986 | TCGTGAGCAGAATTTTATCCCA | 57.785 | 40.909 | 0.00 | 0.00 | 0.00 | 4.37 |
79 | 80 | 4.780815 | TCGTGAGCAGAATTTTATCCCAT | 58.219 | 39.130 | 0.00 | 0.00 | 0.00 | 4.00 |
80 | 81 | 4.576053 | TCGTGAGCAGAATTTTATCCCATG | 59.424 | 41.667 | 0.00 | 0.00 | 0.00 | 3.66 |
81 | 82 | 4.336433 | CGTGAGCAGAATTTTATCCCATGT | 59.664 | 41.667 | 0.00 | 0.00 | 0.00 | 3.21 |
82 | 83 | 5.163622 | CGTGAGCAGAATTTTATCCCATGTT | 60.164 | 40.000 | 0.00 | 0.00 | 0.00 | 2.71 |
83 | 84 | 6.038161 | CGTGAGCAGAATTTTATCCCATGTTA | 59.962 | 38.462 | 0.00 | 0.00 | 0.00 | 2.41 |
84 | 85 | 7.415095 | CGTGAGCAGAATTTTATCCCATGTTAA | 60.415 | 37.037 | 0.00 | 0.00 | 0.00 | 2.01 |
85 | 86 | 8.416329 | GTGAGCAGAATTTTATCCCATGTTAAT | 58.584 | 33.333 | 0.00 | 0.00 | 0.00 | 1.40 |
86 | 87 | 8.980596 | TGAGCAGAATTTTATCCCATGTTAATT | 58.019 | 29.630 | 0.00 | 0.00 | 0.00 | 1.40 |
87 | 88 | 9.468532 | GAGCAGAATTTTATCCCATGTTAATTC | 57.531 | 33.333 | 0.00 | 0.00 | 34.07 | 2.17 |
88 | 89 | 8.424133 | AGCAGAATTTTATCCCATGTTAATTCC | 58.576 | 33.333 | 0.00 | 0.00 | 34.27 | 3.01 |
89 | 90 | 7.657354 | GCAGAATTTTATCCCATGTTAATTCCC | 59.343 | 37.037 | 0.00 | 0.00 | 34.27 | 3.97 |
90 | 91 | 8.703743 | CAGAATTTTATCCCATGTTAATTCCCA | 58.296 | 33.333 | 0.00 | 0.00 | 34.27 | 4.37 |
91 | 92 | 8.704668 | AGAATTTTATCCCATGTTAATTCCCAC | 58.295 | 33.333 | 0.00 | 0.00 | 34.27 | 4.61 |
92 | 93 | 6.800072 | TTTTATCCCATGTTAATTCCCACC | 57.200 | 37.500 | 0.00 | 0.00 | 0.00 | 4.61 |
93 | 94 | 5.473849 | TTATCCCATGTTAATTCCCACCA | 57.526 | 39.130 | 0.00 | 0.00 | 0.00 | 4.17 |
94 | 95 | 4.557899 | ATCCCATGTTAATTCCCACCAT | 57.442 | 40.909 | 0.00 | 0.00 | 0.00 | 3.55 |
95 | 96 | 5.678142 | ATCCCATGTTAATTCCCACCATA | 57.322 | 39.130 | 0.00 | 0.00 | 0.00 | 2.74 |
96 | 97 | 5.678142 | TCCCATGTTAATTCCCACCATAT | 57.322 | 39.130 | 0.00 | 0.00 | 0.00 | 1.78 |
97 | 98 | 5.392995 | TCCCATGTTAATTCCCACCATATG | 58.607 | 41.667 | 0.00 | 0.00 | 0.00 | 1.78 |
98 | 99 | 4.021192 | CCCATGTTAATTCCCACCATATGC | 60.021 | 45.833 | 0.00 | 0.00 | 0.00 | 3.14 |
99 | 100 | 4.021192 | CCATGTTAATTCCCACCATATGCC | 60.021 | 45.833 | 0.00 | 0.00 | 0.00 | 4.40 |
100 | 101 | 4.256983 | TGTTAATTCCCACCATATGCCA | 57.743 | 40.909 | 0.00 | 0.00 | 0.00 | 4.92 |
101 | 102 | 4.614475 | TGTTAATTCCCACCATATGCCAA | 58.386 | 39.130 | 0.00 | 0.00 | 0.00 | 4.52 |
102 | 103 | 5.026121 | TGTTAATTCCCACCATATGCCAAA | 58.974 | 37.500 | 0.00 | 0.00 | 0.00 | 3.28 |
103 | 104 | 5.105146 | TGTTAATTCCCACCATATGCCAAAC | 60.105 | 40.000 | 0.00 | 0.00 | 0.00 | 2.93 |
104 | 105 | 2.612285 | TTCCCACCATATGCCAAACA | 57.388 | 45.000 | 0.00 | 0.00 | 0.00 | 2.83 |
105 | 106 | 2.612285 | TCCCACCATATGCCAAACAA | 57.388 | 45.000 | 0.00 | 0.00 | 0.00 | 2.83 |
106 | 107 | 2.455557 | TCCCACCATATGCCAAACAAG | 58.544 | 47.619 | 0.00 | 0.00 | 0.00 | 3.16 |
107 | 108 | 2.042297 | TCCCACCATATGCCAAACAAGA | 59.958 | 45.455 | 0.00 | 0.00 | 0.00 | 3.02 |
108 | 109 | 2.428171 | CCCACCATATGCCAAACAAGAG | 59.572 | 50.000 | 0.00 | 0.00 | 0.00 | 2.85 |
109 | 110 | 3.355378 | CCACCATATGCCAAACAAGAGA | 58.645 | 45.455 | 0.00 | 0.00 | 0.00 | 3.10 |
110 | 111 | 3.763360 | CCACCATATGCCAAACAAGAGAA | 59.237 | 43.478 | 0.00 | 0.00 | 0.00 | 2.87 |
111 | 112 | 4.403432 | CCACCATATGCCAAACAAGAGAAT | 59.597 | 41.667 | 0.00 | 0.00 | 0.00 | 2.40 |
112 | 113 | 5.345702 | CACCATATGCCAAACAAGAGAATG | 58.654 | 41.667 | 0.00 | 0.00 | 0.00 | 2.67 |
113 | 114 | 5.125900 | CACCATATGCCAAACAAGAGAATGA | 59.874 | 40.000 | 0.00 | 0.00 | 0.00 | 2.57 |
114 | 115 | 5.359009 | ACCATATGCCAAACAAGAGAATGAG | 59.641 | 40.000 | 0.00 | 0.00 | 0.00 | 2.90 |
115 | 116 | 5.591472 | CCATATGCCAAACAAGAGAATGAGA | 59.409 | 40.000 | 0.00 | 0.00 | 0.00 | 3.27 |
116 | 117 | 6.238676 | CCATATGCCAAACAAGAGAATGAGAG | 60.239 | 42.308 | 0.00 | 0.00 | 0.00 | 3.20 |
117 | 118 | 4.090761 | TGCCAAACAAGAGAATGAGAGT | 57.909 | 40.909 | 0.00 | 0.00 | 0.00 | 3.24 |
118 | 119 | 5.227569 | TGCCAAACAAGAGAATGAGAGTA | 57.772 | 39.130 | 0.00 | 0.00 | 0.00 | 2.59 |
119 | 120 | 5.620206 | TGCCAAACAAGAGAATGAGAGTAA | 58.380 | 37.500 | 0.00 | 0.00 | 0.00 | 2.24 |
120 | 121 | 6.061441 | TGCCAAACAAGAGAATGAGAGTAAA | 58.939 | 36.000 | 0.00 | 0.00 | 0.00 | 2.01 |
121 | 122 | 6.545666 | TGCCAAACAAGAGAATGAGAGTAAAA | 59.454 | 34.615 | 0.00 | 0.00 | 0.00 | 1.52 |
122 | 123 | 7.231317 | TGCCAAACAAGAGAATGAGAGTAAAAT | 59.769 | 33.333 | 0.00 | 0.00 | 0.00 | 1.82 |
123 | 124 | 7.752686 | GCCAAACAAGAGAATGAGAGTAAAATC | 59.247 | 37.037 | 0.00 | 0.00 | 0.00 | 2.17 |
124 | 125 | 9.007901 | CCAAACAAGAGAATGAGAGTAAAATCT | 57.992 | 33.333 | 0.00 | 0.00 | 0.00 | 2.40 |
131 | 132 | 8.700973 | AGAGAATGAGAGTAAAATCTACTTCCC | 58.299 | 37.037 | 0.00 | 0.00 | 0.00 | 3.97 |
132 | 133 | 8.380742 | AGAATGAGAGTAAAATCTACTTCCCA | 57.619 | 34.615 | 0.00 | 0.00 | 0.00 | 4.37 |
133 | 134 | 8.997734 | AGAATGAGAGTAAAATCTACTTCCCAT | 58.002 | 33.333 | 0.00 | 0.00 | 0.00 | 4.00 |
134 | 135 | 8.970859 | AATGAGAGTAAAATCTACTTCCCATG | 57.029 | 34.615 | 0.00 | 0.00 | 0.00 | 3.66 |
135 | 136 | 7.733773 | TGAGAGTAAAATCTACTTCCCATGA | 57.266 | 36.000 | 0.00 | 0.00 | 0.00 | 3.07 |
136 | 137 | 7.556844 | TGAGAGTAAAATCTACTTCCCATGAC | 58.443 | 38.462 | 0.00 | 0.00 | 0.00 | 3.06 |
137 | 138 | 7.400339 | TGAGAGTAAAATCTACTTCCCATGACT | 59.600 | 37.037 | 0.00 | 0.00 | 0.00 | 3.41 |
138 | 139 | 8.840200 | AGAGTAAAATCTACTTCCCATGACTA | 57.160 | 34.615 | 0.00 | 0.00 | 0.00 | 2.59 |
139 | 140 | 9.268282 | AGAGTAAAATCTACTTCCCATGACTAA | 57.732 | 33.333 | 0.00 | 0.00 | 0.00 | 2.24 |
142 | 143 | 9.274206 | GTAAAATCTACTTCCCATGACTAATCC | 57.726 | 37.037 | 0.00 | 0.00 | 0.00 | 3.01 |
143 | 144 | 6.441088 | AATCTACTTCCCATGACTAATCCC | 57.559 | 41.667 | 0.00 | 0.00 | 0.00 | 3.85 |
144 | 145 | 5.157770 | TCTACTTCCCATGACTAATCCCT | 57.842 | 43.478 | 0.00 | 0.00 | 0.00 | 4.20 |
145 | 146 | 5.148502 | TCTACTTCCCATGACTAATCCCTC | 58.851 | 45.833 | 0.00 | 0.00 | 0.00 | 4.30 |
146 | 147 | 4.014273 | ACTTCCCATGACTAATCCCTCT | 57.986 | 45.455 | 0.00 | 0.00 | 0.00 | 3.69 |
147 | 148 | 5.157770 | ACTTCCCATGACTAATCCCTCTA | 57.842 | 43.478 | 0.00 | 0.00 | 0.00 | 2.43 |
148 | 149 | 5.731924 | ACTTCCCATGACTAATCCCTCTAT | 58.268 | 41.667 | 0.00 | 0.00 | 0.00 | 1.98 |
149 | 150 | 6.875469 | ACTTCCCATGACTAATCCCTCTATA | 58.125 | 40.000 | 0.00 | 0.00 | 0.00 | 1.31 |
150 | 151 | 7.313731 | ACTTCCCATGACTAATCCCTCTATAA | 58.686 | 38.462 | 0.00 | 0.00 | 0.00 | 0.98 |
151 | 152 | 7.456269 | ACTTCCCATGACTAATCCCTCTATAAG | 59.544 | 40.741 | 0.00 | 0.00 | 0.00 | 1.73 |
152 | 153 | 5.721960 | TCCCATGACTAATCCCTCTATAAGC | 59.278 | 44.000 | 0.00 | 0.00 | 0.00 | 3.09 |
153 | 154 | 5.485353 | CCCATGACTAATCCCTCTATAAGCA | 59.515 | 44.000 | 0.00 | 0.00 | 0.00 | 3.91 |
154 | 155 | 6.402222 | CCATGACTAATCCCTCTATAAGCAC | 58.598 | 44.000 | 0.00 | 0.00 | 0.00 | 4.40 |
155 | 156 | 6.402222 | CATGACTAATCCCTCTATAAGCACC | 58.598 | 44.000 | 0.00 | 0.00 | 0.00 | 5.01 |
156 | 157 | 4.838986 | TGACTAATCCCTCTATAAGCACCC | 59.161 | 45.833 | 0.00 | 0.00 | 0.00 | 4.61 |
157 | 158 | 5.088026 | GACTAATCCCTCTATAAGCACCCT | 58.912 | 45.833 | 0.00 | 0.00 | 0.00 | 4.34 |
158 | 159 | 5.088026 | ACTAATCCCTCTATAAGCACCCTC | 58.912 | 45.833 | 0.00 | 0.00 | 0.00 | 4.30 |
159 | 160 | 3.637821 | ATCCCTCTATAAGCACCCTCA | 57.362 | 47.619 | 0.00 | 0.00 | 0.00 | 3.86 |
160 | 161 | 3.637821 | TCCCTCTATAAGCACCCTCAT | 57.362 | 47.619 | 0.00 | 0.00 | 0.00 | 2.90 |
161 | 162 | 3.242867 | TCCCTCTATAAGCACCCTCATG | 58.757 | 50.000 | 0.00 | 0.00 | 0.00 | 3.07 |
162 | 163 | 2.289945 | CCCTCTATAAGCACCCTCATGC | 60.290 | 54.545 | 0.00 | 0.00 | 46.50 | 4.06 |
169 | 170 | 2.952714 | GCACCCTCATGCAAACTCT | 58.047 | 52.632 | 0.00 | 0.00 | 45.39 | 3.24 |
170 | 171 | 0.807496 | GCACCCTCATGCAAACTCTC | 59.193 | 55.000 | 0.00 | 0.00 | 45.39 | 3.20 |
171 | 172 | 1.612726 | GCACCCTCATGCAAACTCTCT | 60.613 | 52.381 | 0.00 | 0.00 | 45.39 | 3.10 |
172 | 173 | 2.787994 | CACCCTCATGCAAACTCTCTT | 58.212 | 47.619 | 0.00 | 0.00 | 0.00 | 2.85 |
173 | 174 | 3.152341 | CACCCTCATGCAAACTCTCTTT | 58.848 | 45.455 | 0.00 | 0.00 | 0.00 | 2.52 |
174 | 175 | 3.190118 | CACCCTCATGCAAACTCTCTTTC | 59.810 | 47.826 | 0.00 | 0.00 | 0.00 | 2.62 |
175 | 176 | 2.751806 | CCCTCATGCAAACTCTCTTTCC | 59.248 | 50.000 | 0.00 | 0.00 | 0.00 | 3.13 |
176 | 177 | 2.751806 | CCTCATGCAAACTCTCTTTCCC | 59.248 | 50.000 | 0.00 | 0.00 | 0.00 | 3.97 |
177 | 178 | 2.751806 | CTCATGCAAACTCTCTTTCCCC | 59.248 | 50.000 | 0.00 | 0.00 | 0.00 | 4.81 |
178 | 179 | 2.376518 | TCATGCAAACTCTCTTTCCCCT | 59.623 | 45.455 | 0.00 | 0.00 | 0.00 | 4.79 |
179 | 180 | 2.276732 | TGCAAACTCTCTTTCCCCTG | 57.723 | 50.000 | 0.00 | 0.00 | 0.00 | 4.45 |
180 | 181 | 0.884514 | GCAAACTCTCTTTCCCCTGC | 59.115 | 55.000 | 0.00 | 0.00 | 0.00 | 4.85 |
181 | 182 | 1.539157 | CAAACTCTCTTTCCCCTGCC | 58.461 | 55.000 | 0.00 | 0.00 | 0.00 | 4.85 |
182 | 183 | 0.405973 | AAACTCTCTTTCCCCTGCCC | 59.594 | 55.000 | 0.00 | 0.00 | 0.00 | 5.36 |
183 | 184 | 0.772124 | AACTCTCTTTCCCCTGCCCA | 60.772 | 55.000 | 0.00 | 0.00 | 0.00 | 5.36 |
184 | 185 | 0.772124 | ACTCTCTTTCCCCTGCCCAA | 60.772 | 55.000 | 0.00 | 0.00 | 0.00 | 4.12 |
185 | 186 | 0.322906 | CTCTCTTTCCCCTGCCCAAC | 60.323 | 60.000 | 0.00 | 0.00 | 0.00 | 3.77 |
186 | 187 | 0.772124 | TCTCTTTCCCCTGCCCAACT | 60.772 | 55.000 | 0.00 | 0.00 | 0.00 | 3.16 |
187 | 188 | 0.610232 | CTCTTTCCCCTGCCCAACTG | 60.610 | 60.000 | 0.00 | 0.00 | 0.00 | 3.16 |
188 | 189 | 1.153756 | CTTTCCCCTGCCCAACTGT | 59.846 | 57.895 | 0.00 | 0.00 | 0.00 | 3.55 |
189 | 190 | 0.469892 | CTTTCCCCTGCCCAACTGTT | 60.470 | 55.000 | 0.00 | 0.00 | 0.00 | 3.16 |
190 | 191 | 0.031616 | TTTCCCCTGCCCAACTGTTT | 60.032 | 50.000 | 0.00 | 0.00 | 0.00 | 2.83 |
191 | 192 | 0.854218 | TTCCCCTGCCCAACTGTTTA | 59.146 | 50.000 | 0.00 | 0.00 | 0.00 | 2.01 |
192 | 193 | 0.111639 | TCCCCTGCCCAACTGTTTAC | 59.888 | 55.000 | 0.00 | 0.00 | 0.00 | 2.01 |
193 | 194 | 0.898326 | CCCCTGCCCAACTGTTTACC | 60.898 | 60.000 | 0.00 | 0.00 | 0.00 | 2.85 |
194 | 195 | 0.178975 | CCCTGCCCAACTGTTTACCA | 60.179 | 55.000 | 0.00 | 0.00 | 0.00 | 3.25 |
195 | 196 | 1.698506 | CCTGCCCAACTGTTTACCAA | 58.301 | 50.000 | 0.00 | 0.00 | 0.00 | 3.67 |
196 | 197 | 2.035632 | CCTGCCCAACTGTTTACCAAA | 58.964 | 47.619 | 0.00 | 0.00 | 0.00 | 3.28 |
197 | 198 | 2.223947 | CCTGCCCAACTGTTTACCAAAC | 60.224 | 50.000 | 0.00 | 0.00 | 41.73 | 2.93 |
209 | 210 | 6.995511 | TGTTTACCAAACAGGCTGTATATC | 57.004 | 37.500 | 22.37 | 7.04 | 45.79 | 1.63 |
210 | 211 | 5.883673 | TGTTTACCAAACAGGCTGTATATCC | 59.116 | 40.000 | 22.37 | 5.17 | 45.79 | 2.59 |
211 | 212 | 3.577805 | ACCAAACAGGCTGTATATCCC | 57.422 | 47.619 | 22.37 | 0.00 | 43.14 | 3.85 |
212 | 213 | 3.123273 | ACCAAACAGGCTGTATATCCCT | 58.877 | 45.455 | 22.37 | 0.00 | 43.14 | 4.20 |
215 | 216 | 3.944476 | CAGGCTGTATATCCCTGCC | 57.056 | 57.895 | 6.28 | 12.62 | 44.61 | 4.85 |
494 | 532 | 2.373224 | GCATCTCCTTCCCTTTCCTTG | 58.627 | 52.381 | 0.00 | 0.00 | 0.00 | 3.61 |
503 | 541 | 2.547595 | CCTTTCCTTGCCCTCCCCA | 61.548 | 63.158 | 0.00 | 0.00 | 0.00 | 4.96 |
504 | 542 | 1.699752 | CTTTCCTTGCCCTCCCCAT | 59.300 | 57.895 | 0.00 | 0.00 | 0.00 | 4.00 |
559 | 599 | 3.968837 | TACGACCCAGACCCGCCAT | 62.969 | 63.158 | 0.00 | 0.00 | 0.00 | 4.40 |
781 | 821 | 2.609610 | TCCCTCCCTCCGGTTTGG | 60.610 | 66.667 | 0.00 | 2.35 | 40.09 | 3.28 |
800 | 840 | 3.436243 | TGGTCCCTCTTCTCTTCTTCTC | 58.564 | 50.000 | 0.00 | 0.00 | 0.00 | 2.87 |
823 | 866 | 1.888018 | CCAAGCTCCCGTTCTCGTA | 59.112 | 57.895 | 0.00 | 0.00 | 35.01 | 3.43 |
826 | 869 | 2.194271 | CAAGCTCCCGTTCTCGTATTC | 58.806 | 52.381 | 0.00 | 0.00 | 35.01 | 1.75 |
827 | 870 | 1.765230 | AGCTCCCGTTCTCGTATTCT | 58.235 | 50.000 | 0.00 | 0.00 | 35.01 | 2.40 |
876 | 919 | 2.159352 | CGTGTCCCCGTTTCTTGTTTTT | 60.159 | 45.455 | 0.00 | 0.00 | 0.00 | 1.94 |
900 | 943 | 2.743928 | CTCAGGACAAGGCCGTGC | 60.744 | 66.667 | 19.37 | 11.24 | 0.00 | 5.34 |
917 | 960 | 2.579787 | CCTGACGACGCATCCGAC | 60.580 | 66.667 | 0.00 | 0.00 | 38.29 | 4.79 |
1175 | 1218 | 2.421835 | GATGCGCCGAATGCTTCTCG | 62.422 | 60.000 | 4.18 | 0.00 | 38.05 | 4.04 |
1248 | 1302 | 2.995466 | ATCATGTGCTTGTTTGGTCG | 57.005 | 45.000 | 0.00 | 0.00 | 0.00 | 4.79 |
1285 | 1339 | 1.518903 | GGTGGGTCTGTTCTTGCTGC | 61.519 | 60.000 | 0.00 | 0.00 | 0.00 | 5.25 |
1286 | 1340 | 1.228245 | TGGGTCTGTTCTTGCTGCC | 60.228 | 57.895 | 0.00 | 0.00 | 0.00 | 4.85 |
1292 | 1346 | 0.809385 | CTGTTCTTGCTGCCATCCTG | 59.191 | 55.000 | 0.00 | 0.00 | 0.00 | 3.86 |
1300 | 1354 | 0.677731 | GCTGCCATCCTGCTTGTGTA | 60.678 | 55.000 | 0.00 | 0.00 | 35.71 | 2.90 |
1323 | 1377 | 8.397906 | TGTATGTATTCATGCTTAAGTTGCTTC | 58.602 | 33.333 | 4.02 | 0.00 | 37.52 | 3.86 |
1325 | 1379 | 3.829886 | TTCATGCTTAAGTTGCTTCGG | 57.170 | 42.857 | 4.02 | 0.00 | 0.00 | 4.30 |
1395 | 1450 | 4.835927 | GACGCATCGATCCCAACT | 57.164 | 55.556 | 0.00 | 0.00 | 0.00 | 3.16 |
1406 | 1461 | 2.141517 | GATCCCAACTCTCATGATGCG | 58.858 | 52.381 | 0.00 | 0.00 | 0.00 | 4.73 |
1440 | 1497 | 5.006844 | CCTGTTTGTGTGTGTGTATTAACGA | 59.993 | 40.000 | 0.00 | 0.00 | 0.00 | 3.85 |
1464 | 1521 | 6.407202 | ACTAAGTTGCTTGGACATTAGTAGG | 58.593 | 40.000 | 0.00 | 0.00 | 33.06 | 3.18 |
1497 | 1554 | 5.118990 | TGCACTGCTTTTGGATCTAGTATC | 58.881 | 41.667 | 1.98 | 0.00 | 0.00 | 2.24 |
1687 | 1983 | 9.739276 | AGATTTTGCATATAAATCGAGGGAATA | 57.261 | 29.630 | 13.88 | 0.00 | 43.46 | 1.75 |
1715 | 2011 | 8.481974 | AAATACAAATGTTTATTAAACCCGCC | 57.518 | 30.769 | 14.99 | 0.00 | 40.67 | 6.13 |
2052 | 2348 | 7.698836 | AAGCATGATTACAAGTGTTGTTTTC | 57.301 | 32.000 | 0.00 | 0.00 | 42.22 | 2.29 |
2170 | 2466 | 4.097714 | CGCACAAATTACACATGACCATC | 58.902 | 43.478 | 0.00 | 0.00 | 0.00 | 3.51 |
2206 | 2502 | 8.944029 | GTGATATCTAGCATAATGTTGCAATCT | 58.056 | 33.333 | 0.59 | 0.00 | 45.23 | 2.40 |
2292 | 2588 | 6.350110 | GCAAAGCTCTGATGTTAATACCCAAA | 60.350 | 38.462 | 0.00 | 0.00 | 0.00 | 3.28 |
2293 | 2589 | 7.601856 | CAAAGCTCTGATGTTAATACCCAAAA | 58.398 | 34.615 | 0.00 | 0.00 | 0.00 | 2.44 |
2297 | 2593 | 8.815912 | AGCTCTGATGTTAATACCCAAAATTTT | 58.184 | 29.630 | 0.00 | 0.00 | 0.00 | 1.82 |
2364 | 2661 | 8.380867 | TCATCATAGATCCTTGAATAGTTGCAT | 58.619 | 33.333 | 0.00 | 0.00 | 0.00 | 3.96 |
2365 | 2662 | 7.974482 | TCATAGATCCTTGAATAGTTGCATG | 57.026 | 36.000 | 0.00 | 0.00 | 0.00 | 4.06 |
2393 | 2690 | 8.406297 | GTGAAAAGTAGGGAATGCCTATTTAAG | 58.594 | 37.037 | 8.83 | 0.00 | 0.00 | 1.85 |
2419 | 2716 | 9.869757 | GTTTAATGCATAAACCTTACCTGATTT | 57.130 | 29.630 | 0.00 | 0.00 | 45.02 | 2.17 |
2472 | 2769 | 8.506437 | CAAGCTCTTATATTCTGTTGTGTTTGA | 58.494 | 33.333 | 0.00 | 0.00 | 0.00 | 2.69 |
2528 | 2825 | 0.532573 | GACGAGTGGAGCTGGATTCA | 59.467 | 55.000 | 0.00 | 0.00 | 0.00 | 2.57 |
2572 | 2869 | 4.994907 | TGTAGCTTTAATGGCTCTACGA | 57.005 | 40.909 | 6.71 | 0.00 | 40.74 | 3.43 |
2710 | 3007 | 2.354704 | CGGTACCATCTTTGAGGCTTCA | 60.355 | 50.000 | 13.54 | 0.00 | 0.00 | 3.02 |
2734 | 3031 | 7.395772 | TCACTTGCATGGGTATAATTTTTCTCA | 59.604 | 33.333 | 1.28 | 0.00 | 0.00 | 3.27 |
2762 | 3059 | 3.496884 | TGTTCAGAAACTGGCGTTATGAC | 59.503 | 43.478 | 0.00 | 0.00 | 36.30 | 3.06 |
2780 | 3077 | 7.480855 | CGTTATGACTAGTGCTAATGTATACCG | 59.519 | 40.741 | 0.00 | 0.00 | 0.00 | 4.02 |
2864 | 3161 | 3.863142 | AGGTCAGAAAATGCAGATTGC | 57.137 | 42.857 | 0.00 | 0.00 | 45.29 | 3.56 |
2866 | 3163 | 2.417787 | GGTCAGAAAATGCAGATTGCCC | 60.418 | 50.000 | 0.00 | 0.00 | 44.23 | 5.36 |
2868 | 3165 | 2.494471 | TCAGAAAATGCAGATTGCCCAG | 59.506 | 45.455 | 0.00 | 0.00 | 44.23 | 4.45 |
3046 | 3346 | 9.770097 | TTTTAGTTCAGAGAGGCATATATTCTG | 57.230 | 33.333 | 5.37 | 5.37 | 37.27 | 3.02 |
3188 | 3488 | 2.095461 | TCATCTGTTCCGTCTCTCCTG | 58.905 | 52.381 | 0.00 | 0.00 | 0.00 | 3.86 |
3594 | 3894 | 6.223852 | AGTAACGGAAATAGGATATGTGCAG | 58.776 | 40.000 | 0.00 | 0.00 | 0.00 | 4.41 |
3787 | 4087 | 0.323629 | TTCCAGGGTCATTCGTGTCC | 59.676 | 55.000 | 0.00 | 0.00 | 0.00 | 4.02 |
3883 | 4183 | 0.949105 | CGCTAGTGTTTTCCCGCACT | 60.949 | 55.000 | 0.00 | 0.00 | 46.33 | 4.40 |
3997 | 4297 | 4.083431 | TCTGTTCTACTCCTCTTTTCGACG | 60.083 | 45.833 | 0.00 | 0.00 | 0.00 | 5.12 |
4171 | 4471 | 3.753434 | CTGTGCCCTCTCGTCGCT | 61.753 | 66.667 | 0.00 | 0.00 | 0.00 | 4.93 |
4267 | 4567 | 1.886542 | GCCGTCATGTTCTTCCCTTTT | 59.113 | 47.619 | 0.00 | 0.00 | 0.00 | 2.27 |
4330 | 4630 | 1.196808 | CATTGATGCGGCGGGTTATAC | 59.803 | 52.381 | 9.78 | 0.00 | 0.00 | 1.47 |
4383 | 4683 | 2.037251 | AGTGGCGGCATATTATCGAACT | 59.963 | 45.455 | 17.19 | 0.00 | 0.00 | 3.01 |
4479 | 4786 | 2.047274 | CATCCACTTGTCGGCGGT | 60.047 | 61.111 | 7.21 | 0.00 | 0.00 | 5.68 |
4520 | 4830 | 7.093068 | TGCAGAGTATAAGAATAGTTGGGTCAA | 60.093 | 37.037 | 0.00 | 0.00 | 0.00 | 3.18 |
4527 | 4837 | 4.398319 | AGAATAGTTGGGTCAAACTGTGG | 58.602 | 43.478 | 1.22 | 0.00 | 40.58 | 4.17 |
4612 | 4922 | 0.682209 | CCAGTTGGGCAGAATCTGGG | 60.682 | 60.000 | 12.66 | 0.00 | 41.10 | 4.45 |
4651 | 4961 | 1.192428 | AAGAAATCGCGGGACCTAGT | 58.808 | 50.000 | 6.13 | 0.00 | 0.00 | 2.57 |
4682 | 4997 | 5.728351 | TCGTACAACTGAACCTTTTCAAG | 57.272 | 39.130 | 0.00 | 0.00 | 41.34 | 3.02 |
4684 | 4999 | 4.035208 | CGTACAACTGAACCTTTTCAAGCT | 59.965 | 41.667 | 0.00 | 0.00 | 41.34 | 3.74 |
4696 | 5011 | 5.045872 | CCTTTTCAAGCTGTTTCTTTCTGG | 58.954 | 41.667 | 0.00 | 0.00 | 0.00 | 3.86 |
4699 | 5014 | 4.104383 | TCAAGCTGTTTCTTTCTGGGAT | 57.896 | 40.909 | 0.00 | 0.00 | 0.00 | 3.85 |
4703 | 5018 | 2.489722 | GCTGTTTCTTTCTGGGATCCAC | 59.510 | 50.000 | 15.23 | 3.53 | 0.00 | 4.02 |
4823 | 5284 | 4.515191 | GCAGTAGAATGTTTCAGAACCACA | 59.485 | 41.667 | 0.00 | 0.00 | 34.80 | 4.17 |
4872 | 5337 | 4.062677 | AGTACAGTACAGCGAACCAAAA | 57.937 | 40.909 | 13.37 | 0.00 | 0.00 | 2.44 |
4971 | 5441 | 3.589988 | GCTGCTGCTTTCAACTAGAGTA | 58.410 | 45.455 | 8.53 | 0.00 | 36.03 | 2.59 |
4972 | 5442 | 3.369451 | GCTGCTGCTTTCAACTAGAGTAC | 59.631 | 47.826 | 8.53 | 0.00 | 36.03 | 2.73 |
4973 | 5443 | 3.926616 | TGCTGCTTTCAACTAGAGTACC | 58.073 | 45.455 | 0.00 | 0.00 | 0.00 | 3.34 |
4994 | 5464 | 1.300542 | GACGATAGCTCTGCCTGCC | 60.301 | 63.158 | 0.00 | 0.00 | 42.67 | 4.85 |
5118 | 5588 | 1.398692 | GTGGAAACTGGAAAGTGCCA | 58.601 | 50.000 | 0.00 | 0.00 | 36.30 | 4.92 |
5166 | 5636 | 0.752009 | CATGGCTCTGCTGATTGGCT | 60.752 | 55.000 | 7.65 | 0.00 | 0.00 | 4.75 |
5210 | 5686 | 2.787129 | CGCAAGCAAGCAACATGATATG | 59.213 | 45.455 | 0.00 | 0.00 | 0.00 | 1.78 |
5227 | 5706 | 6.094193 | TGATATGTGTTGATAGCTCTCCTG | 57.906 | 41.667 | 0.00 | 0.00 | 0.00 | 3.86 |
5229 | 5708 | 6.777580 | TGATATGTGTTGATAGCTCTCCTGTA | 59.222 | 38.462 | 0.00 | 0.00 | 0.00 | 2.74 |
5269 | 5755 | 1.947456 | AGTTCGAGTTTGTTTGGGAGC | 59.053 | 47.619 | 0.00 | 0.00 | 0.00 | 4.70 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
0 | 1 | 6.581171 | GAAATTGGTTTCCTCAACTCTCAT | 57.419 | 37.500 | 0.00 | 0.00 | 38.20 | 2.90 |
12 | 13 | 7.097192 | GGAAGAAATAGGTGGAAATTGGTTTC | 58.903 | 38.462 | 0.00 | 0.00 | 42.39 | 2.78 |
13 | 14 | 6.013725 | GGGAAGAAATAGGTGGAAATTGGTTT | 60.014 | 38.462 | 0.00 | 0.00 | 0.00 | 3.27 |
14 | 15 | 5.483937 | GGGAAGAAATAGGTGGAAATTGGTT | 59.516 | 40.000 | 0.00 | 0.00 | 0.00 | 3.67 |
15 | 16 | 5.023452 | GGGAAGAAATAGGTGGAAATTGGT | 58.977 | 41.667 | 0.00 | 0.00 | 0.00 | 3.67 |
16 | 17 | 5.022787 | TGGGAAGAAATAGGTGGAAATTGG | 58.977 | 41.667 | 0.00 | 0.00 | 0.00 | 3.16 |
17 | 18 | 6.603940 | TTGGGAAGAAATAGGTGGAAATTG | 57.396 | 37.500 | 0.00 | 0.00 | 0.00 | 2.32 |
18 | 19 | 6.213397 | CCTTTGGGAAGAAATAGGTGGAAATT | 59.787 | 38.462 | 0.00 | 0.00 | 34.71 | 1.82 |
19 | 20 | 5.721480 | CCTTTGGGAAGAAATAGGTGGAAAT | 59.279 | 40.000 | 0.00 | 0.00 | 34.71 | 2.17 |
20 | 21 | 5.083821 | CCTTTGGGAAGAAATAGGTGGAAA | 58.916 | 41.667 | 0.00 | 0.00 | 34.71 | 3.13 |
21 | 22 | 4.355588 | TCCTTTGGGAAGAAATAGGTGGAA | 59.644 | 41.667 | 0.00 | 0.00 | 38.93 | 3.53 |
22 | 23 | 3.920197 | TCCTTTGGGAAGAAATAGGTGGA | 59.080 | 43.478 | 0.00 | 0.00 | 38.93 | 4.02 |
23 | 24 | 4.316025 | TCCTTTGGGAAGAAATAGGTGG | 57.684 | 45.455 | 0.00 | 0.00 | 38.93 | 4.61 |
24 | 25 | 5.828328 | GGTATCCTTTGGGAAGAAATAGGTG | 59.172 | 44.000 | 0.00 | 0.00 | 45.78 | 4.00 |
25 | 26 | 5.103643 | GGGTATCCTTTGGGAAGAAATAGGT | 60.104 | 44.000 | 0.00 | 0.00 | 45.78 | 3.08 |
26 | 27 | 5.134509 | AGGGTATCCTTTGGGAAGAAATAGG | 59.865 | 44.000 | 0.00 | 0.00 | 45.78 | 2.57 |
27 | 28 | 6.064717 | CAGGGTATCCTTTGGGAAGAAATAG | 58.935 | 44.000 | 0.00 | 0.00 | 45.78 | 1.73 |
28 | 29 | 5.494706 | ACAGGGTATCCTTTGGGAAGAAATA | 59.505 | 40.000 | 0.00 | 0.00 | 45.78 | 1.40 |
29 | 30 | 4.294970 | ACAGGGTATCCTTTGGGAAGAAAT | 59.705 | 41.667 | 0.00 | 0.00 | 45.78 | 2.17 |
30 | 31 | 3.660669 | ACAGGGTATCCTTTGGGAAGAAA | 59.339 | 43.478 | 0.00 | 0.00 | 45.78 | 2.52 |
31 | 32 | 3.265489 | ACAGGGTATCCTTTGGGAAGAA | 58.735 | 45.455 | 0.00 | 0.00 | 45.78 | 2.52 |
32 | 33 | 2.929301 | ACAGGGTATCCTTTGGGAAGA | 58.071 | 47.619 | 0.00 | 0.00 | 45.78 | 2.87 |
33 | 34 | 3.739401 | AACAGGGTATCCTTTGGGAAG | 57.261 | 47.619 | 0.00 | 0.00 | 45.78 | 3.46 |
34 | 35 | 5.806955 | ATTAACAGGGTATCCTTTGGGAA | 57.193 | 39.130 | 0.00 | 0.00 | 45.78 | 3.97 |
35 | 36 | 5.630539 | CGAATTAACAGGGTATCCTTTGGGA | 60.631 | 44.000 | 0.00 | 0.00 | 42.67 | 4.37 |
36 | 37 | 4.578928 | CGAATTAACAGGGTATCCTTTGGG | 59.421 | 45.833 | 0.00 | 0.00 | 42.67 | 4.12 |
37 | 38 | 5.065988 | CACGAATTAACAGGGTATCCTTTGG | 59.934 | 44.000 | 0.00 | 0.00 | 42.67 | 3.28 |
38 | 39 | 5.878116 | TCACGAATTAACAGGGTATCCTTTG | 59.122 | 40.000 | 0.00 | 0.00 | 42.67 | 2.77 |
39 | 40 | 6.057321 | TCACGAATTAACAGGGTATCCTTT | 57.943 | 37.500 | 0.00 | 0.00 | 42.67 | 3.11 |
40 | 41 | 5.671493 | CTCACGAATTAACAGGGTATCCTT | 58.329 | 41.667 | 0.00 | 0.00 | 42.67 | 3.36 |
41 | 42 | 4.443034 | GCTCACGAATTAACAGGGTATCCT | 60.443 | 45.833 | 0.00 | 0.00 | 46.26 | 3.24 |
42 | 43 | 3.808174 | GCTCACGAATTAACAGGGTATCC | 59.192 | 47.826 | 0.00 | 0.00 | 0.00 | 2.59 |
43 | 44 | 4.439057 | TGCTCACGAATTAACAGGGTATC | 58.561 | 43.478 | 0.00 | 0.00 | 0.00 | 2.24 |
44 | 45 | 4.161565 | TCTGCTCACGAATTAACAGGGTAT | 59.838 | 41.667 | 0.00 | 0.00 | 0.00 | 2.73 |
45 | 46 | 3.512329 | TCTGCTCACGAATTAACAGGGTA | 59.488 | 43.478 | 0.00 | 0.00 | 0.00 | 3.69 |
46 | 47 | 2.301870 | TCTGCTCACGAATTAACAGGGT | 59.698 | 45.455 | 0.00 | 0.00 | 0.00 | 4.34 |
47 | 48 | 2.972625 | TCTGCTCACGAATTAACAGGG | 58.027 | 47.619 | 0.00 | 0.00 | 0.00 | 4.45 |
48 | 49 | 5.551760 | AATTCTGCTCACGAATTAACAGG | 57.448 | 39.130 | 0.00 | 0.00 | 38.82 | 4.00 |
49 | 50 | 9.214953 | GATAAAATTCTGCTCACGAATTAACAG | 57.785 | 33.333 | 0.00 | 0.00 | 39.46 | 3.16 |
50 | 51 | 8.181573 | GGATAAAATTCTGCTCACGAATTAACA | 58.818 | 33.333 | 0.00 | 0.00 | 39.46 | 2.41 |
51 | 52 | 7.644157 | GGGATAAAATTCTGCTCACGAATTAAC | 59.356 | 37.037 | 0.00 | 0.00 | 39.46 | 2.01 |
52 | 53 | 7.338196 | TGGGATAAAATTCTGCTCACGAATTAA | 59.662 | 33.333 | 0.00 | 0.00 | 39.46 | 1.40 |
53 | 54 | 6.826231 | TGGGATAAAATTCTGCTCACGAATTA | 59.174 | 34.615 | 0.00 | 0.00 | 39.46 | 1.40 |
54 | 55 | 5.652014 | TGGGATAAAATTCTGCTCACGAATT | 59.348 | 36.000 | 0.00 | 0.00 | 41.46 | 2.17 |
55 | 56 | 5.192927 | TGGGATAAAATTCTGCTCACGAAT | 58.807 | 37.500 | 0.00 | 0.00 | 32.75 | 3.34 |
56 | 57 | 4.584874 | TGGGATAAAATTCTGCTCACGAA | 58.415 | 39.130 | 0.00 | 0.00 | 0.00 | 3.85 |
57 | 58 | 4.214986 | TGGGATAAAATTCTGCTCACGA | 57.785 | 40.909 | 0.00 | 0.00 | 0.00 | 4.35 |
58 | 59 | 4.336433 | ACATGGGATAAAATTCTGCTCACG | 59.664 | 41.667 | 0.00 | 0.00 | 0.00 | 4.35 |
59 | 60 | 5.841957 | ACATGGGATAAAATTCTGCTCAC | 57.158 | 39.130 | 0.00 | 0.00 | 0.00 | 3.51 |
60 | 61 | 7.953005 | TTAACATGGGATAAAATTCTGCTCA | 57.047 | 32.000 | 0.00 | 0.00 | 0.00 | 4.26 |
61 | 62 | 9.468532 | GAATTAACATGGGATAAAATTCTGCTC | 57.531 | 33.333 | 0.00 | 0.00 | 32.95 | 4.26 |
62 | 63 | 8.424133 | GGAATTAACATGGGATAAAATTCTGCT | 58.576 | 33.333 | 0.00 | 0.00 | 34.99 | 4.24 |
63 | 64 | 7.657354 | GGGAATTAACATGGGATAAAATTCTGC | 59.343 | 37.037 | 0.00 | 0.00 | 34.99 | 4.26 |
64 | 65 | 8.703743 | TGGGAATTAACATGGGATAAAATTCTG | 58.296 | 33.333 | 0.00 | 0.00 | 34.99 | 3.02 |
65 | 66 | 8.704668 | GTGGGAATTAACATGGGATAAAATTCT | 58.295 | 33.333 | 0.00 | 0.00 | 34.99 | 2.40 |
66 | 67 | 7.931407 | GGTGGGAATTAACATGGGATAAAATTC | 59.069 | 37.037 | 0.00 | 3.43 | 34.25 | 2.17 |
67 | 68 | 7.404396 | TGGTGGGAATTAACATGGGATAAAATT | 59.596 | 33.333 | 0.00 | 0.00 | 0.00 | 1.82 |
68 | 69 | 6.905776 | TGGTGGGAATTAACATGGGATAAAAT | 59.094 | 34.615 | 0.00 | 0.00 | 0.00 | 1.82 |
69 | 70 | 6.264528 | TGGTGGGAATTAACATGGGATAAAA | 58.735 | 36.000 | 0.00 | 0.00 | 0.00 | 1.52 |
70 | 71 | 5.843469 | TGGTGGGAATTAACATGGGATAAA | 58.157 | 37.500 | 0.00 | 0.00 | 0.00 | 1.40 |
71 | 72 | 5.473849 | TGGTGGGAATTAACATGGGATAA | 57.526 | 39.130 | 0.00 | 0.00 | 0.00 | 1.75 |
72 | 73 | 5.678142 | ATGGTGGGAATTAACATGGGATA | 57.322 | 39.130 | 0.00 | 0.00 | 0.00 | 2.59 |
73 | 74 | 4.557899 | ATGGTGGGAATTAACATGGGAT | 57.442 | 40.909 | 0.00 | 0.00 | 0.00 | 3.85 |
74 | 75 | 5.392995 | CATATGGTGGGAATTAACATGGGA | 58.607 | 41.667 | 0.00 | 0.00 | 0.00 | 4.37 |
75 | 76 | 4.021192 | GCATATGGTGGGAATTAACATGGG | 60.021 | 45.833 | 4.56 | 0.00 | 0.00 | 4.00 |
76 | 77 | 4.021192 | GGCATATGGTGGGAATTAACATGG | 60.021 | 45.833 | 4.56 | 0.00 | 0.00 | 3.66 |
77 | 78 | 4.588106 | TGGCATATGGTGGGAATTAACATG | 59.412 | 41.667 | 4.56 | 0.00 | 0.00 | 3.21 |
78 | 79 | 4.813809 | TGGCATATGGTGGGAATTAACAT | 58.186 | 39.130 | 4.56 | 0.00 | 0.00 | 2.71 |
79 | 80 | 4.256983 | TGGCATATGGTGGGAATTAACA | 57.743 | 40.909 | 4.56 | 0.00 | 0.00 | 2.41 |
80 | 81 | 5.105146 | TGTTTGGCATATGGTGGGAATTAAC | 60.105 | 40.000 | 4.56 | 0.00 | 0.00 | 2.01 |
81 | 82 | 5.026121 | TGTTTGGCATATGGTGGGAATTAA | 58.974 | 37.500 | 4.56 | 0.00 | 0.00 | 1.40 |
82 | 83 | 4.614475 | TGTTTGGCATATGGTGGGAATTA | 58.386 | 39.130 | 4.56 | 0.00 | 0.00 | 1.40 |
83 | 84 | 3.448934 | TGTTTGGCATATGGTGGGAATT | 58.551 | 40.909 | 4.56 | 0.00 | 0.00 | 2.17 |
84 | 85 | 3.113191 | TGTTTGGCATATGGTGGGAAT | 57.887 | 42.857 | 4.56 | 0.00 | 0.00 | 3.01 |
85 | 86 | 2.612285 | TGTTTGGCATATGGTGGGAA | 57.388 | 45.000 | 4.56 | 0.00 | 0.00 | 3.97 |
86 | 87 | 2.042297 | TCTTGTTTGGCATATGGTGGGA | 59.958 | 45.455 | 4.56 | 0.00 | 0.00 | 4.37 |
87 | 88 | 2.428171 | CTCTTGTTTGGCATATGGTGGG | 59.572 | 50.000 | 4.56 | 0.00 | 0.00 | 4.61 |
88 | 89 | 3.355378 | TCTCTTGTTTGGCATATGGTGG | 58.645 | 45.455 | 4.56 | 0.00 | 0.00 | 4.61 |
89 | 90 | 5.125900 | TCATTCTCTTGTTTGGCATATGGTG | 59.874 | 40.000 | 4.56 | 0.00 | 0.00 | 4.17 |
90 | 91 | 5.263599 | TCATTCTCTTGTTTGGCATATGGT | 58.736 | 37.500 | 4.56 | 0.00 | 0.00 | 3.55 |
91 | 92 | 5.591472 | TCTCATTCTCTTGTTTGGCATATGG | 59.409 | 40.000 | 4.56 | 0.00 | 0.00 | 2.74 |
92 | 93 | 6.318144 | ACTCTCATTCTCTTGTTTGGCATATG | 59.682 | 38.462 | 0.00 | 0.00 | 0.00 | 1.78 |
93 | 94 | 6.421485 | ACTCTCATTCTCTTGTTTGGCATAT | 58.579 | 36.000 | 0.00 | 0.00 | 0.00 | 1.78 |
94 | 95 | 5.809001 | ACTCTCATTCTCTTGTTTGGCATA | 58.191 | 37.500 | 0.00 | 0.00 | 0.00 | 3.14 |
95 | 96 | 4.660168 | ACTCTCATTCTCTTGTTTGGCAT | 58.340 | 39.130 | 0.00 | 0.00 | 0.00 | 4.40 |
96 | 97 | 4.090761 | ACTCTCATTCTCTTGTTTGGCA | 57.909 | 40.909 | 0.00 | 0.00 | 0.00 | 4.92 |
97 | 98 | 6.560253 | TTTACTCTCATTCTCTTGTTTGGC | 57.440 | 37.500 | 0.00 | 0.00 | 0.00 | 4.52 |
98 | 99 | 9.007901 | AGATTTTACTCTCATTCTCTTGTTTGG | 57.992 | 33.333 | 0.00 | 0.00 | 0.00 | 3.28 |
105 | 106 | 8.700973 | GGGAAGTAGATTTTACTCTCATTCTCT | 58.299 | 37.037 | 0.00 | 0.00 | 0.00 | 3.10 |
106 | 107 | 8.478877 | TGGGAAGTAGATTTTACTCTCATTCTC | 58.521 | 37.037 | 0.00 | 0.00 | 0.00 | 2.87 |
107 | 108 | 8.380742 | TGGGAAGTAGATTTTACTCTCATTCT | 57.619 | 34.615 | 0.00 | 0.00 | 0.00 | 2.40 |
108 | 109 | 9.050601 | CATGGGAAGTAGATTTTACTCTCATTC | 57.949 | 37.037 | 0.00 | 0.00 | 0.00 | 2.67 |
109 | 110 | 8.772250 | TCATGGGAAGTAGATTTTACTCTCATT | 58.228 | 33.333 | 0.00 | 0.00 | 0.00 | 2.57 |
110 | 111 | 8.207545 | GTCATGGGAAGTAGATTTTACTCTCAT | 58.792 | 37.037 | 0.00 | 0.00 | 0.00 | 2.90 |
111 | 112 | 7.400339 | AGTCATGGGAAGTAGATTTTACTCTCA | 59.600 | 37.037 | 0.00 | 0.00 | 0.00 | 3.27 |
112 | 113 | 7.787028 | AGTCATGGGAAGTAGATTTTACTCTC | 58.213 | 38.462 | 0.00 | 0.00 | 0.00 | 3.20 |
113 | 114 | 7.741554 | AGTCATGGGAAGTAGATTTTACTCT | 57.258 | 36.000 | 0.00 | 0.00 | 0.00 | 3.24 |
116 | 117 | 9.274206 | GGATTAGTCATGGGAAGTAGATTTTAC | 57.726 | 37.037 | 0.00 | 0.00 | 0.00 | 2.01 |
117 | 118 | 8.437575 | GGGATTAGTCATGGGAAGTAGATTTTA | 58.562 | 37.037 | 0.00 | 0.00 | 0.00 | 1.52 |
118 | 119 | 7.129504 | AGGGATTAGTCATGGGAAGTAGATTTT | 59.870 | 37.037 | 0.00 | 0.00 | 0.00 | 1.82 |
119 | 120 | 6.621514 | AGGGATTAGTCATGGGAAGTAGATTT | 59.378 | 38.462 | 0.00 | 0.00 | 0.00 | 2.17 |
120 | 121 | 6.153924 | AGGGATTAGTCATGGGAAGTAGATT | 58.846 | 40.000 | 0.00 | 0.00 | 0.00 | 2.40 |
121 | 122 | 5.731924 | AGGGATTAGTCATGGGAAGTAGAT | 58.268 | 41.667 | 0.00 | 0.00 | 0.00 | 1.98 |
122 | 123 | 5.103043 | AGAGGGATTAGTCATGGGAAGTAGA | 60.103 | 44.000 | 0.00 | 0.00 | 0.00 | 2.59 |
123 | 124 | 5.151454 | AGAGGGATTAGTCATGGGAAGTAG | 58.849 | 45.833 | 0.00 | 0.00 | 0.00 | 2.57 |
124 | 125 | 5.157770 | AGAGGGATTAGTCATGGGAAGTA | 57.842 | 43.478 | 0.00 | 0.00 | 0.00 | 2.24 |
125 | 126 | 4.014273 | AGAGGGATTAGTCATGGGAAGT | 57.986 | 45.455 | 0.00 | 0.00 | 0.00 | 3.01 |
126 | 127 | 7.580495 | GCTTATAGAGGGATTAGTCATGGGAAG | 60.580 | 44.444 | 0.00 | 0.00 | 0.00 | 3.46 |
127 | 128 | 6.213600 | GCTTATAGAGGGATTAGTCATGGGAA | 59.786 | 42.308 | 0.00 | 0.00 | 0.00 | 3.97 |
128 | 129 | 5.721960 | GCTTATAGAGGGATTAGTCATGGGA | 59.278 | 44.000 | 0.00 | 0.00 | 0.00 | 4.37 |
129 | 130 | 5.485353 | TGCTTATAGAGGGATTAGTCATGGG | 59.515 | 44.000 | 0.00 | 0.00 | 0.00 | 4.00 |
130 | 131 | 6.402222 | GTGCTTATAGAGGGATTAGTCATGG | 58.598 | 44.000 | 0.00 | 0.00 | 0.00 | 3.66 |
131 | 132 | 6.402222 | GGTGCTTATAGAGGGATTAGTCATG | 58.598 | 44.000 | 0.00 | 0.00 | 0.00 | 3.07 |
132 | 133 | 5.485708 | GGGTGCTTATAGAGGGATTAGTCAT | 59.514 | 44.000 | 0.00 | 0.00 | 0.00 | 3.06 |
133 | 134 | 4.838986 | GGGTGCTTATAGAGGGATTAGTCA | 59.161 | 45.833 | 0.00 | 0.00 | 0.00 | 3.41 |
134 | 135 | 5.088026 | AGGGTGCTTATAGAGGGATTAGTC | 58.912 | 45.833 | 0.00 | 0.00 | 0.00 | 2.59 |
135 | 136 | 5.088026 | GAGGGTGCTTATAGAGGGATTAGT | 58.912 | 45.833 | 0.00 | 0.00 | 0.00 | 2.24 |
136 | 137 | 5.087323 | TGAGGGTGCTTATAGAGGGATTAG | 58.913 | 45.833 | 0.00 | 0.00 | 0.00 | 1.73 |
137 | 138 | 5.087923 | TGAGGGTGCTTATAGAGGGATTA | 57.912 | 43.478 | 0.00 | 0.00 | 0.00 | 1.75 |
138 | 139 | 3.941629 | TGAGGGTGCTTATAGAGGGATT | 58.058 | 45.455 | 0.00 | 0.00 | 0.00 | 3.01 |
139 | 140 | 3.637821 | TGAGGGTGCTTATAGAGGGAT | 57.362 | 47.619 | 0.00 | 0.00 | 0.00 | 3.85 |
140 | 141 | 3.242867 | CATGAGGGTGCTTATAGAGGGA | 58.757 | 50.000 | 0.00 | 0.00 | 0.00 | 4.20 |
141 | 142 | 2.289945 | GCATGAGGGTGCTTATAGAGGG | 60.290 | 54.545 | 0.00 | 0.00 | 41.82 | 4.30 |
142 | 143 | 2.369860 | TGCATGAGGGTGCTTATAGAGG | 59.630 | 50.000 | 0.00 | 0.00 | 45.27 | 3.69 |
143 | 144 | 3.758755 | TGCATGAGGGTGCTTATAGAG | 57.241 | 47.619 | 0.00 | 0.00 | 45.27 | 2.43 |
144 | 145 | 4.080356 | AGTTTGCATGAGGGTGCTTATAGA | 60.080 | 41.667 | 0.00 | 0.00 | 45.27 | 1.98 |
145 | 146 | 4.202441 | AGTTTGCATGAGGGTGCTTATAG | 58.798 | 43.478 | 0.00 | 0.00 | 45.27 | 1.31 |
146 | 147 | 4.080356 | AGAGTTTGCATGAGGGTGCTTATA | 60.080 | 41.667 | 0.00 | 0.00 | 45.27 | 0.98 |
147 | 148 | 3.019564 | GAGTTTGCATGAGGGTGCTTAT | 58.980 | 45.455 | 0.00 | 0.00 | 45.27 | 1.73 |
148 | 149 | 2.040278 | AGAGTTTGCATGAGGGTGCTTA | 59.960 | 45.455 | 0.00 | 0.00 | 45.27 | 3.09 |
149 | 150 | 1.202976 | AGAGTTTGCATGAGGGTGCTT | 60.203 | 47.619 | 0.00 | 0.00 | 45.27 | 3.91 |
150 | 151 | 0.403271 | AGAGTTTGCATGAGGGTGCT | 59.597 | 50.000 | 0.00 | 0.00 | 45.27 | 4.40 |
151 | 152 | 0.807496 | GAGAGTTTGCATGAGGGTGC | 59.193 | 55.000 | 0.00 | 0.00 | 45.25 | 5.01 |
152 | 153 | 2.486472 | AGAGAGTTTGCATGAGGGTG | 57.514 | 50.000 | 0.00 | 0.00 | 0.00 | 4.61 |
153 | 154 | 3.416156 | GAAAGAGAGTTTGCATGAGGGT | 58.584 | 45.455 | 0.00 | 0.00 | 0.00 | 4.34 |
154 | 155 | 2.751806 | GGAAAGAGAGTTTGCATGAGGG | 59.248 | 50.000 | 0.00 | 0.00 | 0.00 | 4.30 |
155 | 156 | 2.751806 | GGGAAAGAGAGTTTGCATGAGG | 59.248 | 50.000 | 0.00 | 0.00 | 0.00 | 3.86 |
156 | 157 | 2.751806 | GGGGAAAGAGAGTTTGCATGAG | 59.248 | 50.000 | 0.00 | 0.00 | 0.00 | 2.90 |
157 | 158 | 2.376518 | AGGGGAAAGAGAGTTTGCATGA | 59.623 | 45.455 | 0.00 | 0.00 | 0.00 | 3.07 |
158 | 159 | 2.490903 | CAGGGGAAAGAGAGTTTGCATG | 59.509 | 50.000 | 0.00 | 0.00 | 0.00 | 4.06 |
159 | 160 | 2.800250 | CAGGGGAAAGAGAGTTTGCAT | 58.200 | 47.619 | 0.00 | 0.00 | 0.00 | 3.96 |
160 | 161 | 1.819305 | GCAGGGGAAAGAGAGTTTGCA | 60.819 | 52.381 | 0.00 | 0.00 | 0.00 | 4.08 |
161 | 162 | 0.884514 | GCAGGGGAAAGAGAGTTTGC | 59.115 | 55.000 | 0.00 | 0.00 | 0.00 | 3.68 |
162 | 163 | 1.539157 | GGCAGGGGAAAGAGAGTTTG | 58.461 | 55.000 | 0.00 | 0.00 | 0.00 | 2.93 |
163 | 164 | 0.405973 | GGGCAGGGGAAAGAGAGTTT | 59.594 | 55.000 | 0.00 | 0.00 | 0.00 | 2.66 |
164 | 165 | 0.772124 | TGGGCAGGGGAAAGAGAGTT | 60.772 | 55.000 | 0.00 | 0.00 | 0.00 | 3.01 |
165 | 166 | 0.772124 | TTGGGCAGGGGAAAGAGAGT | 60.772 | 55.000 | 0.00 | 0.00 | 0.00 | 3.24 |
166 | 167 | 0.322906 | GTTGGGCAGGGGAAAGAGAG | 60.323 | 60.000 | 0.00 | 0.00 | 0.00 | 3.20 |
167 | 168 | 0.772124 | AGTTGGGCAGGGGAAAGAGA | 60.772 | 55.000 | 0.00 | 0.00 | 0.00 | 3.10 |
168 | 169 | 0.610232 | CAGTTGGGCAGGGGAAAGAG | 60.610 | 60.000 | 0.00 | 0.00 | 0.00 | 2.85 |
169 | 170 | 1.360393 | ACAGTTGGGCAGGGGAAAGA | 61.360 | 55.000 | 0.00 | 0.00 | 0.00 | 2.52 |
170 | 171 | 0.469892 | AACAGTTGGGCAGGGGAAAG | 60.470 | 55.000 | 0.00 | 0.00 | 0.00 | 2.62 |
171 | 172 | 0.031616 | AAACAGTTGGGCAGGGGAAA | 60.032 | 50.000 | 0.00 | 0.00 | 0.00 | 3.13 |
172 | 173 | 0.854218 | TAAACAGTTGGGCAGGGGAA | 59.146 | 50.000 | 0.00 | 0.00 | 0.00 | 3.97 |
173 | 174 | 0.111639 | GTAAACAGTTGGGCAGGGGA | 59.888 | 55.000 | 0.00 | 0.00 | 0.00 | 4.81 |
174 | 175 | 0.898326 | GGTAAACAGTTGGGCAGGGG | 60.898 | 60.000 | 0.00 | 0.00 | 0.00 | 4.79 |
175 | 176 | 0.178975 | TGGTAAACAGTTGGGCAGGG | 60.179 | 55.000 | 0.00 | 0.00 | 0.00 | 4.45 |
176 | 177 | 1.698506 | TTGGTAAACAGTTGGGCAGG | 58.301 | 50.000 | 0.00 | 0.00 | 0.00 | 4.85 |
177 | 178 | 2.428890 | TGTTTGGTAAACAGTTGGGCAG | 59.571 | 45.455 | 3.20 | 0.00 | 45.79 | 4.85 |
178 | 179 | 2.457598 | TGTTTGGTAAACAGTTGGGCA | 58.542 | 42.857 | 3.20 | 0.00 | 45.79 | 5.36 |
187 | 188 | 5.298527 | GGGATATACAGCCTGTTTGGTAAAC | 59.701 | 44.000 | 1.02 | 0.00 | 41.73 | 2.01 |
188 | 189 | 5.192923 | AGGGATATACAGCCTGTTTGGTAAA | 59.807 | 40.000 | 1.02 | 0.00 | 38.35 | 2.01 |
189 | 190 | 4.724798 | AGGGATATACAGCCTGTTTGGTAA | 59.275 | 41.667 | 1.02 | 0.00 | 38.35 | 2.85 |
190 | 191 | 4.102524 | CAGGGATATACAGCCTGTTTGGTA | 59.897 | 45.833 | 1.02 | 0.00 | 38.35 | 3.25 |
191 | 192 | 3.117888 | CAGGGATATACAGCCTGTTTGGT | 60.118 | 47.826 | 1.02 | 0.00 | 38.35 | 3.67 |
192 | 193 | 3.480470 | CAGGGATATACAGCCTGTTTGG | 58.520 | 50.000 | 1.02 | 0.00 | 39.35 | 3.28 |
193 | 194 | 2.880890 | GCAGGGATATACAGCCTGTTTG | 59.119 | 50.000 | 1.02 | 0.00 | 32.81 | 2.93 |
194 | 195 | 2.158608 | GGCAGGGATATACAGCCTGTTT | 60.159 | 50.000 | 1.02 | 0.00 | 42.01 | 2.83 |
195 | 196 | 1.421646 | GGCAGGGATATACAGCCTGTT | 59.578 | 52.381 | 1.02 | 0.00 | 42.01 | 3.16 |
196 | 197 | 1.059913 | GGCAGGGATATACAGCCTGT | 58.940 | 55.000 | 12.22 | 1.54 | 42.01 | 4.00 |
197 | 198 | 0.036952 | CGGCAGGGATATACAGCCTG | 60.037 | 60.000 | 16.13 | 0.00 | 43.07 | 4.85 |
198 | 199 | 0.178932 | TCGGCAGGGATATACAGCCT | 60.179 | 55.000 | 16.13 | 0.00 | 43.07 | 4.58 |
199 | 200 | 0.037232 | GTCGGCAGGGATATACAGCC | 60.037 | 60.000 | 9.96 | 9.96 | 41.86 | 4.85 |
200 | 201 | 0.388649 | CGTCGGCAGGGATATACAGC | 60.389 | 60.000 | 0.00 | 0.00 | 0.00 | 4.40 |
201 | 202 | 1.200252 | CTCGTCGGCAGGGATATACAG | 59.800 | 57.143 | 0.00 | 0.00 | 0.00 | 2.74 |
202 | 203 | 1.244816 | CTCGTCGGCAGGGATATACA | 58.755 | 55.000 | 0.00 | 0.00 | 0.00 | 2.29 |
203 | 204 | 1.245732 | ACTCGTCGGCAGGGATATAC | 58.754 | 55.000 | 0.00 | 0.00 | 0.00 | 1.47 |
204 | 205 | 2.617276 | CCTACTCGTCGGCAGGGATATA | 60.617 | 54.545 | 0.00 | 0.00 | 0.00 | 0.86 |
205 | 206 | 1.535833 | CTACTCGTCGGCAGGGATAT | 58.464 | 55.000 | 0.00 | 0.00 | 0.00 | 1.63 |
206 | 207 | 0.536687 | CCTACTCGTCGGCAGGGATA | 60.537 | 60.000 | 0.00 | 0.00 | 0.00 | 2.59 |
207 | 208 | 1.828660 | CCTACTCGTCGGCAGGGAT | 60.829 | 63.158 | 0.00 | 0.00 | 0.00 | 3.85 |
208 | 209 | 2.439701 | CCTACTCGTCGGCAGGGA | 60.440 | 66.667 | 0.00 | 0.00 | 0.00 | 4.20 |
209 | 210 | 2.439701 | TCCTACTCGTCGGCAGGG | 60.440 | 66.667 | 7.54 | 0.08 | 0.00 | 4.45 |
210 | 211 | 2.482333 | CCTCCTACTCGTCGGCAGG | 61.482 | 68.421 | 0.00 | 0.00 | 0.00 | 4.85 |
211 | 212 | 2.482333 | CCCTCCTACTCGTCGGCAG | 61.482 | 68.421 | 0.00 | 0.00 | 0.00 | 4.85 |
212 | 213 | 2.439701 | CCCTCCTACTCGTCGGCA | 60.440 | 66.667 | 0.00 | 0.00 | 0.00 | 5.69 |
213 | 214 | 2.615227 | TACCCCTCCTACTCGTCGGC | 62.615 | 65.000 | 0.00 | 0.00 | 0.00 | 5.54 |
214 | 215 | 0.817229 | GTACCCCTCCTACTCGTCGG | 60.817 | 65.000 | 0.00 | 0.00 | 0.00 | 4.79 |
215 | 216 | 0.107508 | TGTACCCCTCCTACTCGTCG | 60.108 | 60.000 | 0.00 | 0.00 | 0.00 | 5.12 |
216 | 217 | 1.340405 | TGTGTACCCCTCCTACTCGTC | 60.340 | 57.143 | 0.00 | 0.00 | 0.00 | 4.20 |
356 | 363 | 1.680735 | TGATGACTTTGGCTTTGCGTT | 59.319 | 42.857 | 0.00 | 0.00 | 0.00 | 4.84 |
494 | 532 | 3.584403 | GGATGGGATGGGGAGGGC | 61.584 | 72.222 | 0.00 | 0.00 | 0.00 | 5.19 |
503 | 541 | 3.809013 | GCGGTGTGGGGATGGGAT | 61.809 | 66.667 | 0.00 | 0.00 | 0.00 | 3.85 |
559 | 599 | 1.884075 | CTCCGACGTTGTGGGATGGA | 61.884 | 60.000 | 1.30 | 0.00 | 39.55 | 3.41 |
733 | 773 | 1.808411 | GTTTCTTGGATCTGCACCGA | 58.192 | 50.000 | 0.00 | 0.00 | 0.00 | 4.69 |
781 | 821 | 3.699538 | GAGGAGAAGAAGAGAAGAGGGAC | 59.300 | 52.174 | 0.00 | 0.00 | 0.00 | 4.46 |
800 | 840 | 4.394712 | AACGGGAGCTTGGCGAGG | 62.395 | 66.667 | 3.44 | 0.00 | 0.00 | 4.63 |
876 | 919 | 1.198713 | GCCTTGTCCTGAGAGATCCA | 58.801 | 55.000 | 0.00 | 0.00 | 0.00 | 3.41 |
900 | 943 | 2.579787 | GTCGGATGCGTCGTCAGG | 60.580 | 66.667 | 6.49 | 0.00 | 0.00 | 3.86 |
902 | 945 | 2.460837 | TTTCGTCGGATGCGTCGTCA | 62.461 | 55.000 | 22.91 | 10.62 | 0.00 | 4.35 |
911 | 954 | 2.012051 | GCCTGACCAATTTCGTCGGAT | 61.012 | 52.381 | 11.33 | 0.00 | 38.66 | 4.18 |
912 | 955 | 0.672401 | GCCTGACCAATTTCGTCGGA | 60.672 | 55.000 | 11.33 | 0.00 | 38.66 | 4.55 |
917 | 960 | 3.051392 | GCCCGCCTGACCAATTTCG | 62.051 | 63.158 | 0.00 | 0.00 | 0.00 | 3.46 |
1175 | 1218 | 4.310769 | AGAGCATCAATGGTAATAGCGAC | 58.689 | 43.478 | 0.00 | 0.00 | 38.85 | 5.19 |
1248 | 1302 | 0.318120 | CCAACCAATCCACCAACTGC | 59.682 | 55.000 | 0.00 | 0.00 | 0.00 | 4.40 |
1285 | 1339 | 5.125356 | TGAATACATACACAAGCAGGATGG | 58.875 | 41.667 | 0.00 | 0.00 | 35.86 | 3.51 |
1286 | 1340 | 6.665465 | CATGAATACATACACAAGCAGGATG | 58.335 | 40.000 | 0.00 | 0.00 | 35.36 | 3.51 |
1292 | 1346 | 7.697691 | ACTTAAGCATGAATACATACACAAGC | 58.302 | 34.615 | 1.29 | 0.00 | 35.09 | 4.01 |
1300 | 1354 | 6.458751 | CCGAAGCAACTTAAGCATGAATACAT | 60.459 | 38.462 | 11.86 | 0.00 | 37.19 | 2.29 |
1323 | 1377 | 1.291877 | AAGCGCACTTTCTACTGCCG | 61.292 | 55.000 | 11.47 | 0.00 | 29.41 | 5.69 |
1325 | 1379 | 0.453449 | GCAAGCGCACTTTCTACTGC | 60.453 | 55.000 | 11.47 | 0.00 | 38.36 | 4.40 |
1391 | 1446 | 1.062148 | CTGCACGCATCATGAGAGTTG | 59.938 | 52.381 | 0.09 | 0.00 | 0.00 | 3.16 |
1395 | 1450 | 0.247185 | TGTCTGCACGCATCATGAGA | 59.753 | 50.000 | 0.09 | 0.00 | 0.00 | 3.27 |
1440 | 1497 | 6.212791 | TCCTACTAATGTCCAAGCAACTTAGT | 59.787 | 38.462 | 0.00 | 0.00 | 34.69 | 2.24 |
1497 | 1554 | 6.815142 | TCAATGCGTTGGATATCAGATAGATG | 59.185 | 38.462 | 18.37 | 0.00 | 35.78 | 2.90 |
1647 | 1943 | 5.478407 | TGCAAAATCTAACATGAGACGAGA | 58.522 | 37.500 | 0.00 | 0.00 | 0.00 | 4.04 |
1715 | 2011 | 8.135529 | GTGCACTTATTTTAGGGGCTTTATTAG | 58.864 | 37.037 | 10.32 | 0.00 | 0.00 | 1.73 |
2052 | 2348 | 3.733337 | AGCTCCTATTAGCATTCCAACG | 58.267 | 45.455 | 0.00 | 0.00 | 45.30 | 4.10 |
2170 | 2466 | 4.155709 | TGCTAGATATCACCAAGAGGGAG | 58.844 | 47.826 | 5.32 | 0.00 | 41.15 | 4.30 |
2206 | 2502 | 1.207089 | CTGCGAGTGGAAACCAGGATA | 59.793 | 52.381 | 0.00 | 0.00 | 32.34 | 2.59 |
2260 | 2556 | 3.428532 | ACATCAGAGCTTTGCCATTTCT | 58.571 | 40.909 | 0.00 | 0.00 | 0.00 | 2.52 |
2361 | 2658 | 4.737054 | CATTCCCTACTTTTCACACATGC | 58.263 | 43.478 | 0.00 | 0.00 | 0.00 | 4.06 |
2364 | 2661 | 3.153919 | GGCATTCCCTACTTTTCACACA | 58.846 | 45.455 | 0.00 | 0.00 | 0.00 | 3.72 |
2365 | 2662 | 3.421844 | AGGCATTCCCTACTTTTCACAC | 58.578 | 45.455 | 0.00 | 0.00 | 44.08 | 3.82 |
2393 | 2690 | 9.869757 | AAATCAGGTAAGGTTTATGCATTAAAC | 57.130 | 29.630 | 3.54 | 4.59 | 45.97 | 2.01 |
2528 | 2825 | 3.837355 | AGTTTGGAGAAAAGGCACTCAT | 58.163 | 40.909 | 0.00 | 0.00 | 38.49 | 2.90 |
2572 | 2869 | 5.782845 | TCCCAAGCCAATACCAACTAAAAAT | 59.217 | 36.000 | 0.00 | 0.00 | 0.00 | 1.82 |
2710 | 3007 | 7.716799 | TGAGAAAAATTATACCCATGCAAGT | 57.283 | 32.000 | 0.00 | 0.00 | 0.00 | 3.16 |
2734 | 3031 | 2.489329 | CGCCAGTTTCTGAACATGGAAT | 59.511 | 45.455 | 19.27 | 0.00 | 36.76 | 3.01 |
2762 | 3059 | 4.022242 | ACTGCCGGTATACATTAGCACTAG | 60.022 | 45.833 | 1.90 | 0.00 | 0.00 | 2.57 |
2780 | 3077 | 8.240682 | TGTTTATCATGTATGTTGTTTACTGCC | 58.759 | 33.333 | 0.00 | 0.00 | 0.00 | 4.85 |
2864 | 3161 | 2.158755 | ACCAAGTGTCAAAGACTCTGGG | 60.159 | 50.000 | 16.99 | 16.99 | 46.71 | 4.45 |
2866 | 3163 | 5.334414 | GCATAACCAAGTGTCAAAGACTCTG | 60.334 | 44.000 | 2.89 | 0.00 | 36.66 | 3.35 |
2868 | 3165 | 4.757149 | AGCATAACCAAGTGTCAAAGACTC | 59.243 | 41.667 | 0.00 | 0.00 | 33.15 | 3.36 |
3046 | 3346 | 1.821216 | ACATGTCCGATTTCACCACC | 58.179 | 50.000 | 0.00 | 0.00 | 0.00 | 4.61 |
3188 | 3488 | 5.863397 | TGTGATAGCATAAAACAAAAGCAGC | 59.137 | 36.000 | 0.00 | 0.00 | 0.00 | 5.25 |
3594 | 3894 | 4.691216 | GTGTACAGATTCAACCTCCTGTTC | 59.309 | 45.833 | 0.00 | 0.00 | 40.07 | 3.18 |
3629 | 3929 | 3.685836 | AACACGTTTTTGTACAGGCTC | 57.314 | 42.857 | 0.00 | 0.00 | 0.00 | 4.70 |
3787 | 4087 | 5.353400 | CCCAATTCTATCCACGATCATGATG | 59.647 | 44.000 | 14.30 | 8.18 | 0.00 | 3.07 |
3964 | 4264 | 5.642165 | AGGAGTAGAACAGAACTAACCTCA | 58.358 | 41.667 | 0.00 | 0.00 | 29.85 | 3.86 |
4011 | 4311 | 0.538287 | ACAAGAGGGTTCAGCCTTGC | 60.538 | 55.000 | 0.00 | 0.00 | 39.51 | 4.01 |
4162 | 4462 | 1.081175 | CAGAGCAACAGCGACGAGA | 60.081 | 57.895 | 0.00 | 0.00 | 0.00 | 4.04 |
4267 | 4567 | 0.246635 | GCCTACAGCCTTTCGTCTCA | 59.753 | 55.000 | 0.00 | 0.00 | 34.35 | 3.27 |
4288 | 4588 | 1.996786 | TATCGGCCTCGGTGTCGTTC | 61.997 | 60.000 | 0.00 | 0.00 | 37.69 | 3.95 |
4348 | 4648 | 0.250038 | GCCACTGCTCTCAAGACACA | 60.250 | 55.000 | 0.00 | 0.00 | 33.53 | 3.72 |
4354 | 4654 | 1.898330 | TATGCCGCCACTGCTCTCAA | 61.898 | 55.000 | 0.00 | 0.00 | 34.43 | 3.02 |
4479 | 4786 | 4.284550 | GCAACCCCCTCTGCACCA | 62.285 | 66.667 | 0.00 | 0.00 | 38.48 | 4.17 |
4492 | 4802 | 7.048512 | ACCCAACTATTCTTATACTCTGCAAC | 58.951 | 38.462 | 0.00 | 0.00 | 0.00 | 4.17 |
4520 | 4830 | 2.413310 | AAACAGAACCGACCACAGTT | 57.587 | 45.000 | 0.00 | 0.00 | 0.00 | 3.16 |
4527 | 4837 | 6.870439 | AGTATAGGTTACAAAACAGAACCGAC | 59.130 | 38.462 | 0.00 | 0.00 | 46.03 | 4.79 |
4651 | 4961 | 7.972832 | AGGTTCAGTTGTACGAAATGAATTA | 57.027 | 32.000 | 17.48 | 1.58 | 32.93 | 1.40 |
4682 | 4997 | 2.489722 | GTGGATCCCAGAAAGAAACAGC | 59.510 | 50.000 | 9.90 | 0.00 | 32.34 | 4.40 |
4684 | 4999 | 3.874383 | TGTGGATCCCAGAAAGAAACA | 57.126 | 42.857 | 9.90 | 0.00 | 32.34 | 2.83 |
4711 | 5026 | 4.902443 | TCTGTTTGTTATTTTGGCACGA | 57.098 | 36.364 | 0.00 | 0.00 | 0.00 | 4.35 |
4712 | 5027 | 6.199908 | TCAATTCTGTTTGTTATTTTGGCACG | 59.800 | 34.615 | 0.00 | 0.00 | 0.00 | 5.34 |
4769 | 5230 | 5.927030 | GTTGATTGATCAGCGTAAACAGAA | 58.073 | 37.500 | 0.00 | 0.00 | 38.19 | 3.02 |
4802 | 5263 | 6.294176 | GCATTGTGGTTCTGAAACATTCTACT | 60.294 | 38.462 | 11.84 | 0.00 | 37.10 | 2.57 |
4803 | 5264 | 5.858581 | GCATTGTGGTTCTGAAACATTCTAC | 59.141 | 40.000 | 11.84 | 0.00 | 37.10 | 2.59 |
4804 | 5265 | 5.769662 | AGCATTGTGGTTCTGAAACATTCTA | 59.230 | 36.000 | 11.84 | 0.00 | 37.10 | 2.10 |
4805 | 5266 | 4.586001 | AGCATTGTGGTTCTGAAACATTCT | 59.414 | 37.500 | 11.84 | 2.35 | 37.10 | 2.40 |
4823 | 5284 | 0.251033 | TGCTCAGCACTGGAAGCATT | 60.251 | 50.000 | 0.00 | 0.00 | 36.10 | 3.56 |
4876 | 5341 | 9.830975 | GTGCCCTGGTCATTATTATTTTTAATT | 57.169 | 29.630 | 0.00 | 0.00 | 0.00 | 1.40 |
4877 | 5342 | 8.986991 | TGTGCCCTGGTCATTATTATTTTTAAT | 58.013 | 29.630 | 0.00 | 0.00 | 0.00 | 1.40 |
4879 | 5344 | 7.962995 | TGTGCCCTGGTCATTATTATTTTTA | 57.037 | 32.000 | 0.00 | 0.00 | 0.00 | 1.52 |
4881 | 5346 | 6.610830 | TGATGTGCCCTGGTCATTATTATTTT | 59.389 | 34.615 | 0.00 | 0.00 | 0.00 | 1.82 |
4885 | 5350 | 4.165950 | ACTGATGTGCCCTGGTCATTATTA | 59.834 | 41.667 | 0.00 | 0.00 | 0.00 | 0.98 |
4887 | 5352 | 2.511218 | ACTGATGTGCCCTGGTCATTAT | 59.489 | 45.455 | 0.00 | 0.00 | 0.00 | 1.28 |
4888 | 5353 | 1.915489 | ACTGATGTGCCCTGGTCATTA | 59.085 | 47.619 | 0.00 | 0.00 | 0.00 | 1.90 |
4890 | 5355 | 1.487976 | CTACTGATGTGCCCTGGTCAT | 59.512 | 52.381 | 0.00 | 0.00 | 0.00 | 3.06 |
4891 | 5356 | 0.904649 | CTACTGATGTGCCCTGGTCA | 59.095 | 55.000 | 0.00 | 0.00 | 0.00 | 4.02 |
4892 | 5357 | 0.179000 | CCTACTGATGTGCCCTGGTC | 59.821 | 60.000 | 0.00 | 0.00 | 0.00 | 4.02 |
4893 | 5358 | 1.915078 | GCCTACTGATGTGCCCTGGT | 61.915 | 60.000 | 0.00 | 0.00 | 0.00 | 4.00 |
4894 | 5359 | 1.153086 | GCCTACTGATGTGCCCTGG | 60.153 | 63.158 | 0.00 | 0.00 | 0.00 | 4.45 |
4956 | 5426 | 4.496360 | GTCCTGGTACTCTAGTTGAAAGC | 58.504 | 47.826 | 0.00 | 0.00 | 0.00 | 3.51 |
4957 | 5427 | 4.458295 | TCGTCCTGGTACTCTAGTTGAAAG | 59.542 | 45.833 | 0.00 | 0.00 | 0.00 | 2.62 |
4958 | 5428 | 4.401022 | TCGTCCTGGTACTCTAGTTGAAA | 58.599 | 43.478 | 0.00 | 0.00 | 0.00 | 2.69 |
4971 | 5441 | 1.395826 | GGCAGAGCTATCGTCCTGGT | 61.396 | 60.000 | 0.00 | 0.00 | 0.00 | 4.00 |
4972 | 5442 | 1.112315 | AGGCAGAGCTATCGTCCTGG | 61.112 | 60.000 | 0.00 | 0.00 | 32.90 | 4.45 |
4973 | 5443 | 0.031857 | CAGGCAGAGCTATCGTCCTG | 59.968 | 60.000 | 6.47 | 6.47 | 40.71 | 3.86 |
5166 | 5636 | 2.111999 | CTCCCTCGCCCAAGTGAACA | 62.112 | 60.000 | 0.00 | 0.00 | 30.51 | 3.18 |
5210 | 5686 | 6.015010 | ACCATATACAGGAGAGCTATCAACAC | 60.015 | 42.308 | 11.08 | 0.00 | 0.00 | 3.32 |
5229 | 5708 | 8.707449 | TCGAACTAGTATTACCCAAAACCATAT | 58.293 | 33.333 | 0.00 | 0.00 | 0.00 | 1.78 |
5269 | 5755 | 2.165437 | GGTCACCAGCTCTAGTCTTCTG | 59.835 | 54.545 | 0.00 | 0.00 | 0.00 | 3.02 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.