Multiple sequence alignment - TraesCS2B01G448800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)



BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G448800 chr2B 100.000 2255 0 0 1 2255 641858339 641860593 0.000000e+00 4165.0
1 TraesCS2B01G448800 chr6D 98.106 1109 21 0 562 1670 389254676 389253568 0.000000e+00 1932.0
2 TraesCS2B01G448800 chr6D 97.836 1109 24 0 562 1670 389249881 389248773 0.000000e+00 1916.0
3 TraesCS2B01G448800 chr6D 92.925 424 19 5 1805 2227 431006231 431005818 6.890000e-170 606.0
4 TraesCS2B01G448800 chr6D 100.000 33 0 0 2223 2255 168246294 168246326 6.720000e-06 62.1
5 TraesCS2B01G448800 chr5D 98.106 1109 20 1 562 1670 503238533 503237426 0.000000e+00 1930.0
6 TraesCS2B01G448800 chr5D 98.016 1109 21 1 562 1670 503242782 503241675 0.000000e+00 1925.0
7 TraesCS2B01G448800 chr5D 97.836 1109 24 0 562 1670 503228755 503227647 0.000000e+00 1916.0
8 TraesCS2B01G448800 chr5D 93.632 424 17 5 1805 2227 503254833 503254419 1.900000e-175 625.0
9 TraesCS2B01G448800 chr5D 95.862 145 5 1 1667 1811 352066440 352066297 1.350000e-57 233.0
10 TraesCS2B01G448800 chr5D 100.000 33 0 0 2223 2255 329125327 329125295 6.720000e-06 62.1
11 TraesCS2B01G448800 chr5D 100.000 33 0 0 2223 2255 357552519 357552551 6.720000e-06 62.1
12 TraesCS2B01G448800 chr3A 98.016 1109 22 0 562 1670 66007625 66008733 0.000000e+00 1927.0
13 TraesCS2B01G448800 chr7B 98.016 1109 21 1 562 1670 663101918 663103025 0.000000e+00 1925.0
14 TraesCS2B01G448800 chr7B 97.241 145 3 1 1667 1811 662738084 662738227 6.220000e-61 244.0
15 TraesCS2B01G448800 chr7B 96.552 145 4 1 1667 1811 662737004 662736861 2.890000e-59 239.0
16 TraesCS2B01G448800 chr1D 97.926 1109 23 0 562 1670 51916750 51917858 0.000000e+00 1921.0
17 TraesCS2B01G448800 chr1D 93.412 425 11 7 1806 2227 200552965 200552555 4.120000e-172 614.0
18 TraesCS2B01G448800 chr1D 100.000 33 0 0 2223 2255 144237799 144237831 6.720000e-06 62.1
19 TraesCS2B01G448800 chr3D 97.926 1109 22 1 562 1670 589266016 589267123 0.000000e+00 1919.0
20 TraesCS2B01G448800 chr3D 94.811 424 12 5 1805 2227 158939293 158938879 0.000000e+00 652.0
21 TraesCS2B01G448800 chr3D 93.160 424 19 4 1805 2227 589250273 589249859 4.120000e-172 614.0
22 TraesCS2B01G448800 chr5A 95.550 427 8 4 1805 2227 482021950 482022369 0.000000e+00 673.0
23 TraesCS2B01G448800 chr5B 95.519 424 9 4 1805 2227 429065662 429065248 0.000000e+00 669.0
24 TraesCS2B01G448800 chr5B 95.172 145 6 1 1667 1811 432876208 432876065 6.270000e-56 228.0
25 TraesCS2B01G448800 chrUn 93.632 424 17 5 1805 2227 341019158 341019572 1.900000e-175 625.0
26 TraesCS2B01G448800 chrUn 92.453 424 16 4 1805 2227 362350808 362351216 1.930000e-165 592.0
27 TraesCS2B01G448800 chrUn 100.000 33 0 0 2223 2255 93417255 93417223 6.720000e-06 62.1
28 TraesCS2B01G448800 chrUn 100.000 33 0 0 2223 2255 97067419 97067387 6.720000e-06 62.1
29 TraesCS2B01G448800 chrUn 100.000 33 0 0 2223 2255 278886407 278886375 6.720000e-06 62.1
30 TraesCS2B01G448800 chrUn 100.000 33 0 0 2223 2255 327660787 327660755 6.720000e-06 62.1
31 TraesCS2B01G448800 chr6B 80.347 519 68 21 1 501 61229244 61228742 1.650000e-96 363.0
32 TraesCS2B01G448800 chr6B 95.862 145 5 1 1667 1811 450081475 450081618 1.350000e-57 233.0
33 TraesCS2B01G448800 chr6B 95.172 145 6 1 1667 1811 657529951 657530094 6.270000e-56 228.0
34 TraesCS2B01G448800 chr3B 96.552 145 4 1 1667 1811 201561290 201561433 2.890000e-59 239.0
35 TraesCS2B01G448800 chr3B 83.908 87 12 2 205 291 572847748 572847832 5.160000e-12 82.4
36 TraesCS2B01G448800 chr2D 96.552 145 3 2 1667 1811 196964261 196964403 2.890000e-59 239.0
37 TraesCS2B01G448800 chr1B 96.552 145 4 1 1667 1811 633729380 633729523 2.890000e-59 239.0
38 TraesCS2B01G448800 chr4D 100.000 33 0 0 2223 2255 19923556 19923588 6.720000e-06 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G448800 chr2B 641858339 641860593 2254 False 4165.0 4165 100.000 1 2255 1 chr2B.!!$F1 2254
1 TraesCS2B01G448800 chr6D 389248773 389254676 5903 True 1924.0 1932 97.971 562 1670 2 chr6D.!!$R2 1108
2 TraesCS2B01G448800 chr5D 503237426 503242782 5356 True 1927.5 1930 98.061 562 1670 2 chr5D.!!$R5 1108
3 TraesCS2B01G448800 chr5D 503227647 503228755 1108 True 1916.0 1916 97.836 562 1670 1 chr5D.!!$R3 1108
4 TraesCS2B01G448800 chr3A 66007625 66008733 1108 False 1927.0 1927 98.016 562 1670 1 chr3A.!!$F1 1108
5 TraesCS2B01G448800 chr7B 663101918 663103025 1107 False 1925.0 1925 98.016 562 1670 1 chr7B.!!$F2 1108
6 TraesCS2B01G448800 chr1D 51916750 51917858 1108 False 1921.0 1921 97.926 562 1670 1 chr1D.!!$F1 1108
7 TraesCS2B01G448800 chr3D 589266016 589267123 1107 False 1919.0 1919 97.926 562 1670 1 chr3D.!!$F1 1108
8 TraesCS2B01G448800 chr6B 61228742 61229244 502 True 363.0 363 80.347 1 501 1 chr6B.!!$R1 500


AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
538 541 0.118547 AGGCTACCTAGTTGTGGGGT 59.881 55.0 0.0 0.0 37.16 4.95 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1800 10880 0.239879 TTTGGTGAATCGGAAAGCGC 59.76 50.0 0.0 0.0 0.0 5.92 R


All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
48 50 9.696917 GTGACACCATTTCTAAAATTCAAAGAT 57.303 29.630 0.00 0.00 0.00 2.40
126 128 9.387123 GTGAACACTTTTAAAAATTGCAAACAA 57.613 25.926 1.71 0.00 40.87 2.83
258 261 9.160496 ACTTCTGAACAATTTTTAAAATGTGCA 57.840 25.926 12.67 12.67 35.50 4.57
259 262 9.985318 CTTCTGAACAATTTTTAAAATGTGCAA 57.015 25.926 13.77 3.21 37.01 4.08
279 282 9.376075 TGTGCAAACATTTTCTAAAATTCAAGA 57.624 25.926 0.00 0.00 36.52 3.02
394 397 7.841915 AACATTTTCCGAAAACATGAAAAGT 57.158 28.000 8.46 0.00 40.23 2.66
395 398 7.841915 ACATTTTCCGAAAACATGAAAAGTT 57.158 28.000 8.46 0.00 40.23 2.66
396 399 8.262715 ACATTTTCCGAAAACATGAAAAGTTT 57.737 26.923 8.46 0.00 40.23 2.66
398 401 9.553418 CATTTTCCGAAAACATGAAAAGTTTTT 57.447 25.926 8.46 0.00 46.01 1.94
522 525 8.183536 AGAAAAATGAACATTTCAAAAACAGGC 58.816 29.630 12.20 0.00 43.95 4.85
523 526 7.628769 AAAATGAACATTTCAAAAACAGGCT 57.371 28.000 12.20 0.00 43.95 4.58
524 527 8.729805 AAAATGAACATTTCAAAAACAGGCTA 57.270 26.923 12.20 0.00 43.95 3.93
525 528 7.713764 AATGAACATTTCAAAAACAGGCTAC 57.286 32.000 0.00 0.00 43.95 3.58
526 529 5.596845 TGAACATTTCAAAAACAGGCTACC 58.403 37.500 0.00 0.00 36.59 3.18
527 530 5.362430 TGAACATTTCAAAAACAGGCTACCT 59.638 36.000 0.00 0.00 36.59 3.08
528 531 6.547880 TGAACATTTCAAAAACAGGCTACCTA 59.452 34.615 0.00 0.00 36.59 3.08
529 532 6.575162 ACATTTCAAAAACAGGCTACCTAG 57.425 37.500 0.00 0.00 29.64 3.02
530 533 6.068670 ACATTTCAAAAACAGGCTACCTAGT 58.931 36.000 0.00 0.00 29.64 2.57
531 534 6.549736 ACATTTCAAAAACAGGCTACCTAGTT 59.450 34.615 0.00 0.00 29.64 2.24
532 535 6.385649 TTTCAAAAACAGGCTACCTAGTTG 57.614 37.500 0.00 0.00 29.97 3.16
533 536 5.043737 TCAAAAACAGGCTACCTAGTTGT 57.956 39.130 0.00 0.00 29.97 3.32
534 537 4.819630 TCAAAAACAGGCTACCTAGTTGTG 59.180 41.667 0.00 0.00 29.97 3.33
535 538 3.418684 AAACAGGCTACCTAGTTGTGG 57.581 47.619 0.00 0.00 29.97 4.17
536 539 1.276622 ACAGGCTACCTAGTTGTGGG 58.723 55.000 0.00 0.00 29.64 4.61
537 540 0.541863 CAGGCTACCTAGTTGTGGGG 59.458 60.000 0.00 0.00 29.64 4.96
538 541 0.118547 AGGCTACCTAGTTGTGGGGT 59.881 55.000 0.00 0.00 37.16 4.95
539 542 1.363629 AGGCTACCTAGTTGTGGGGTA 59.636 52.381 0.00 0.00 34.86 3.69
543 546 1.652947 ACCTAGTTGTGGGGTAGTGG 58.347 55.000 0.00 0.00 0.00 4.00
544 547 0.909623 CCTAGTTGTGGGGTAGTGGG 59.090 60.000 0.00 0.00 0.00 4.61
545 548 0.252197 CTAGTTGTGGGGTAGTGGGC 59.748 60.000 0.00 0.00 0.00 5.36
546 549 0.178885 TAGTTGTGGGGTAGTGGGCT 60.179 55.000 0.00 0.00 0.00 5.19
547 550 1.303317 GTTGTGGGGTAGTGGGCTG 60.303 63.158 0.00 0.00 0.00 4.85
548 551 2.534396 TTGTGGGGTAGTGGGCTGG 61.534 63.158 0.00 0.00 0.00 4.85
549 552 4.426313 GTGGGGTAGTGGGCTGGC 62.426 72.222 0.00 0.00 0.00 4.85
560 563 3.200522 GGCTGGCCCAAATTCTCG 58.799 61.111 0.00 0.00 0.00 4.04
639 642 2.852449 ACAAGCCTCTTATCCATTCCCA 59.148 45.455 0.00 0.00 0.00 4.37
703 706 6.736581 TCACATTGGGTTTAGGGATAATCAA 58.263 36.000 0.00 0.00 0.00 2.57
784 5036 0.753262 CCCGTCCCATCGAGAAAGAT 59.247 55.000 0.00 0.00 0.00 2.40
969 10016 7.312154 GCACATGGTTTCATAAAATCTGTACA 58.688 34.615 0.00 0.00 31.33 2.90
1006 10053 1.089920 CGAGCAGGTTTCCATGAAGG 58.910 55.000 0.00 0.00 39.47 3.46
1032 10079 6.541641 AGATCTTGTTCAGCATGTTCTATTCC 59.458 38.462 0.00 0.00 37.40 3.01
1126 10173 1.302511 GTCGCCCCTTCTTCTTGCA 60.303 57.895 0.00 0.00 0.00 4.08
1145 10192 6.267471 TCTTGCACCAAAGATCTTACCATTTT 59.733 34.615 8.75 0.00 31.19 1.82
1155 10202 6.472887 AGATCTTACCATTTTCGAAGGAACA 58.527 36.000 8.78 0.00 0.00 3.18
1369 10449 5.855045 ACCGAGACAGAATTTAGAACTTGT 58.145 37.500 0.00 0.00 0.00 3.16
1471 10551 2.568062 TGCATTGCCAGAATCCATGTTT 59.432 40.909 6.12 0.00 0.00 2.83
1553 10633 1.215647 CCTTTCTCCTCGGTCCACG 59.784 63.158 0.00 0.00 46.11 4.94
1612 10692 3.385111 ACGGAAGAAAGAACTCACAGAGT 59.615 43.478 0.00 0.00 45.64 3.24
1691 10771 8.798859 TTCTCTATGATCAGAAAAAGGAAAGG 57.201 34.615 0.09 0.00 0.00 3.11
1692 10772 8.150827 TCTCTATGATCAGAAAAAGGAAAGGA 57.849 34.615 0.09 0.00 0.00 3.36
1693 10773 8.043710 TCTCTATGATCAGAAAAAGGAAAGGAC 58.956 37.037 0.09 0.00 0.00 3.85
1694 10774 7.922382 TCTATGATCAGAAAAAGGAAAGGACT 58.078 34.615 0.09 0.00 0.00 3.85
1695 10775 9.046846 TCTATGATCAGAAAAAGGAAAGGACTA 57.953 33.333 0.09 0.00 0.00 2.59
1696 10776 9.844257 CTATGATCAGAAAAAGGAAAGGACTAT 57.156 33.333 0.09 0.00 0.00 2.12
1698 10778 8.940397 TGATCAGAAAAAGGAAAGGACTATTT 57.060 30.769 0.00 0.00 0.00 1.40
1699 10779 9.367160 TGATCAGAAAAAGGAAAGGACTATTTT 57.633 29.630 0.00 0.00 0.00 1.82
1700 10780 9.631452 GATCAGAAAAAGGAAAGGACTATTTTG 57.369 33.333 0.00 0.00 0.00 2.44
1701 10781 8.533569 TCAGAAAAAGGAAAGGACTATTTTGT 57.466 30.769 0.00 0.00 0.00 2.83
1702 10782 8.977412 TCAGAAAAAGGAAAGGACTATTTTGTT 58.023 29.630 0.00 0.00 0.00 2.83
1703 10783 9.249457 CAGAAAAAGGAAAGGACTATTTTGTTC 57.751 33.333 0.00 0.00 0.00 3.18
1704 10784 8.421784 AGAAAAAGGAAAGGACTATTTTGTTCC 58.578 33.333 0.00 0.00 35.74 3.62
1705 10785 7.914427 AAAAGGAAAGGACTATTTTGTTCCT 57.086 32.000 0.00 0.00 45.25 3.36
1706 10786 9.429109 AAAAAGGAAAGGACTATTTTGTTCCTA 57.571 29.630 3.33 0.00 43.12 2.94
1707 10787 8.637196 AAAGGAAAGGACTATTTTGTTCCTAG 57.363 34.615 3.33 0.00 43.12 3.02
1708 10788 6.181190 AGGAAAGGACTATTTTGTTCCTAGC 58.819 40.000 0.95 0.00 42.33 3.42
1709 10789 5.357314 GGAAAGGACTATTTTGTTCCTAGCC 59.643 44.000 0.00 0.00 33.28 3.93
1710 10790 4.505324 AGGACTATTTTGTTCCTAGCCC 57.495 45.455 0.00 0.00 0.00 5.19
1711 10791 3.202373 AGGACTATTTTGTTCCTAGCCCC 59.798 47.826 0.00 0.00 0.00 5.80
1712 10792 3.202373 GGACTATTTTGTTCCTAGCCCCT 59.798 47.826 0.00 0.00 0.00 4.79
1713 10793 4.200092 GACTATTTTGTTCCTAGCCCCTG 58.800 47.826 0.00 0.00 0.00 4.45
1714 10794 2.532250 ATTTTGTTCCTAGCCCCTGG 57.468 50.000 0.00 0.00 0.00 4.45
1715 10795 0.407918 TTTTGTTCCTAGCCCCTGGG 59.592 55.000 5.50 5.50 33.15 4.45
1725 10805 3.793060 CCCCTGGGGCGTAGATAG 58.207 66.667 21.20 0.00 35.35 2.08
1726 10806 1.155390 CCCCTGGGGCGTAGATAGA 59.845 63.158 21.20 0.00 35.35 1.98
1727 10807 0.471211 CCCCTGGGGCGTAGATAGAA 60.471 60.000 21.20 0.00 35.35 2.10
1728 10808 1.645710 CCCTGGGGCGTAGATAGAAT 58.354 55.000 4.27 0.00 0.00 2.40
1729 10809 1.978580 CCCTGGGGCGTAGATAGAATT 59.021 52.381 4.27 0.00 0.00 2.17
1730 10810 3.170717 CCCTGGGGCGTAGATAGAATTA 58.829 50.000 4.27 0.00 0.00 1.40
1731 10811 3.195825 CCCTGGGGCGTAGATAGAATTAG 59.804 52.174 4.27 0.00 0.00 1.73
1732 10812 4.087182 CCTGGGGCGTAGATAGAATTAGA 58.913 47.826 0.00 0.00 0.00 2.10
1733 10813 4.712337 CCTGGGGCGTAGATAGAATTAGAT 59.288 45.833 0.00 0.00 0.00 1.98
1734 10814 5.892119 CCTGGGGCGTAGATAGAATTAGATA 59.108 44.000 0.00 0.00 0.00 1.98
1735 10815 6.380274 CCTGGGGCGTAGATAGAATTAGATAA 59.620 42.308 0.00 0.00 0.00 1.75
1736 10816 7.093465 CCTGGGGCGTAGATAGAATTAGATAAA 60.093 40.741 0.00 0.00 0.00 1.40
1737 10817 8.197592 TGGGGCGTAGATAGAATTAGATAAAA 57.802 34.615 0.00 0.00 0.00 1.52
1738 10818 8.822805 TGGGGCGTAGATAGAATTAGATAAAAT 58.177 33.333 0.00 0.00 0.00 1.82
1768 10848 7.646548 AGATTTGAAAGGCCTAAATTAGACC 57.353 36.000 5.16 0.00 0.00 3.85
1769 10849 7.182060 AGATTTGAAAGGCCTAAATTAGACCA 58.818 34.615 5.16 0.00 29.63 4.02
1770 10850 7.673926 AGATTTGAAAGGCCTAAATTAGACCAA 59.326 33.333 5.16 0.00 29.63 3.67
1771 10851 7.604657 TTTGAAAGGCCTAAATTAGACCAAA 57.395 32.000 5.16 0.94 29.63 3.28
1772 10852 6.834168 TGAAAGGCCTAAATTAGACCAAAG 57.166 37.500 5.16 0.00 29.63 2.77
1773 10853 6.311735 TGAAAGGCCTAAATTAGACCAAAGT 58.688 36.000 5.16 0.00 29.63 2.66
1774 10854 7.463431 TGAAAGGCCTAAATTAGACCAAAGTA 58.537 34.615 5.16 0.00 29.63 2.24
1775 10855 7.945664 TGAAAGGCCTAAATTAGACCAAAGTAA 59.054 33.333 5.16 0.00 29.63 2.24
1776 10856 8.895141 AAAGGCCTAAATTAGACCAAAGTAAT 57.105 30.769 5.16 0.00 29.63 1.89
1777 10857 8.895141 AAGGCCTAAATTAGACCAAAGTAATT 57.105 30.769 5.16 0.00 29.63 1.40
1778 10858 8.521170 AGGCCTAAATTAGACCAAAGTAATTC 57.479 34.615 1.29 0.00 29.63 2.17
1779 10859 7.560262 AGGCCTAAATTAGACCAAAGTAATTCC 59.440 37.037 1.29 0.00 29.63 3.01
1780 10860 7.415229 GCCTAAATTAGACCAAAGTAATTCCG 58.585 38.462 0.83 0.00 30.22 4.30
1781 10861 7.066645 GCCTAAATTAGACCAAAGTAATTCCGT 59.933 37.037 0.83 0.00 30.22 4.69
1782 10862 8.610035 CCTAAATTAGACCAAAGTAATTCCGTC 58.390 37.037 0.83 0.00 30.22 4.79
1783 10863 9.379791 CTAAATTAGACCAAAGTAATTCCGTCT 57.620 33.333 9.09 9.09 33.98 4.18
1784 10864 7.611213 AATTAGACCAAAGTAATTCCGTCTG 57.389 36.000 12.55 0.00 32.52 3.51
1785 10865 3.335579 AGACCAAAGTAATTCCGTCTGC 58.664 45.455 4.58 0.00 30.21 4.26
1786 10866 3.008049 AGACCAAAGTAATTCCGTCTGCT 59.992 43.478 4.58 0.00 30.21 4.24
1787 10867 4.222145 AGACCAAAGTAATTCCGTCTGCTA 59.778 41.667 4.58 0.00 30.21 3.49
1788 10868 4.504858 ACCAAAGTAATTCCGTCTGCTAG 58.495 43.478 0.00 0.00 0.00 3.42
1789 10869 4.222145 ACCAAAGTAATTCCGTCTGCTAGA 59.778 41.667 0.00 0.00 0.00 2.43
1790 10870 5.175859 CCAAAGTAATTCCGTCTGCTAGAA 58.824 41.667 0.00 0.00 0.00 2.10
1791 10871 5.817816 CCAAAGTAATTCCGTCTGCTAGAAT 59.182 40.000 0.00 0.00 0.00 2.40
1792 10872 6.984474 CCAAAGTAATTCCGTCTGCTAGAATA 59.016 38.462 0.00 0.00 30.21 1.75
1793 10873 7.494625 CCAAAGTAATTCCGTCTGCTAGAATAA 59.505 37.037 0.00 0.00 30.21 1.40
1794 10874 8.543774 CAAAGTAATTCCGTCTGCTAGAATAAG 58.456 37.037 0.00 0.00 30.21 1.73
1795 10875 7.584122 AGTAATTCCGTCTGCTAGAATAAGA 57.416 36.000 0.00 0.00 30.21 2.10
1796 10876 8.008513 AGTAATTCCGTCTGCTAGAATAAGAA 57.991 34.615 0.00 0.00 30.21 2.52
1797 10877 8.475639 AGTAATTCCGTCTGCTAGAATAAGAAA 58.524 33.333 0.00 0.00 30.21 2.52
1798 10878 9.095065 GTAATTCCGTCTGCTAGAATAAGAAAA 57.905 33.333 0.00 0.00 30.21 2.29
1799 10879 8.561738 AATTCCGTCTGCTAGAATAAGAAAAA 57.438 30.769 0.00 0.00 30.21 1.94
1800 10880 7.596749 TTCCGTCTGCTAGAATAAGAAAAAG 57.403 36.000 0.00 0.00 0.00 2.27
1801 10881 5.581085 TCCGTCTGCTAGAATAAGAAAAAGC 59.419 40.000 0.00 0.00 0.00 3.51
1802 10882 5.484958 CGTCTGCTAGAATAAGAAAAAGCG 58.515 41.667 0.00 0.00 32.67 4.68
1803 10883 5.259380 GTCTGCTAGAATAAGAAAAAGCGC 58.741 41.667 0.00 0.00 32.67 5.92
1804 10884 5.064071 GTCTGCTAGAATAAGAAAAAGCGCT 59.936 40.000 2.64 2.64 32.67 5.92
1805 10885 5.643777 TCTGCTAGAATAAGAAAAAGCGCTT 59.356 36.000 18.98 18.98 32.67 4.68
1806 10886 6.149474 TCTGCTAGAATAAGAAAAAGCGCTTT 59.851 34.615 29.11 29.11 32.67 3.51
1807 10887 6.314784 TGCTAGAATAAGAAAAAGCGCTTTC 58.685 36.000 33.69 23.05 35.85 2.62
1808 10888 5.739630 GCTAGAATAAGAAAAAGCGCTTTCC 59.260 40.000 33.69 26.35 36.18 3.13
1809 10889 4.723248 AGAATAAGAAAAAGCGCTTTCCG 58.277 39.130 33.69 0.00 36.18 4.30
1810 10890 4.454504 AGAATAAGAAAAAGCGCTTTCCGA 59.545 37.500 33.69 20.60 40.02 4.55
1811 10891 4.965119 ATAAGAAAAAGCGCTTTCCGAT 57.035 36.364 33.69 22.04 40.02 4.18
1813 10893 3.203161 AGAAAAAGCGCTTTCCGATTC 57.797 42.857 33.69 29.46 46.01 2.52
1814 10894 2.552315 AGAAAAAGCGCTTTCCGATTCA 59.448 40.909 33.69 0.00 46.01 2.57
1815 10895 2.331809 AAAAGCGCTTTCCGATTCAC 57.668 45.000 33.69 0.00 46.01 3.18
1816 10896 0.521735 AAAGCGCTTTCCGATTCACC 59.478 50.000 29.11 0.00 46.01 4.02
1817 10897 0.605319 AAGCGCTTTCCGATTCACCA 60.605 50.000 18.98 0.00 42.72 4.17
1818 10898 0.605319 AGCGCTTTCCGATTCACCAA 60.605 50.000 2.64 0.00 40.02 3.67
1819 10899 0.239879 GCGCTTTCCGATTCACCAAA 59.760 50.000 0.00 0.00 40.02 3.28
1820 10900 1.963747 CGCTTTCCGATTCACCAAAC 58.036 50.000 0.00 0.00 40.02 2.93
1821 10901 1.401018 CGCTTTCCGATTCACCAAACC 60.401 52.381 0.00 0.00 40.02 3.27
1822 10902 1.611491 GCTTTCCGATTCACCAAACCA 59.389 47.619 0.00 0.00 0.00 3.67
1823 10903 2.035321 GCTTTCCGATTCACCAAACCAA 59.965 45.455 0.00 0.00 0.00 3.67
1824 10904 3.306019 GCTTTCCGATTCACCAAACCAAT 60.306 43.478 0.00 0.00 0.00 3.16
1825 10905 4.799255 GCTTTCCGATTCACCAAACCAATT 60.799 41.667 0.00 0.00 0.00 2.32
1826 10906 4.513198 TTCCGATTCACCAAACCAATTC 57.487 40.909 0.00 0.00 0.00 2.17
1827 10907 3.761897 TCCGATTCACCAAACCAATTCT 58.238 40.909 0.00 0.00 0.00 2.40
1828 10908 4.148838 TCCGATTCACCAAACCAATTCTT 58.851 39.130 0.00 0.00 0.00 2.52
1829 10909 5.317808 TCCGATTCACCAAACCAATTCTTA 58.682 37.500 0.00 0.00 0.00 2.10
1830 10910 5.949354 TCCGATTCACCAAACCAATTCTTAT 59.051 36.000 0.00 0.00 0.00 1.73
1831 10911 6.094881 TCCGATTCACCAAACCAATTCTTATC 59.905 38.462 0.00 0.00 0.00 1.75
1832 10912 6.095440 CCGATTCACCAAACCAATTCTTATCT 59.905 38.462 0.00 0.00 0.00 1.98
1833 10913 7.189512 CGATTCACCAAACCAATTCTTATCTC 58.810 38.462 0.00 0.00 0.00 2.75
1834 10914 7.066284 CGATTCACCAAACCAATTCTTATCTCT 59.934 37.037 0.00 0.00 0.00 3.10
1835 10915 8.655935 ATTCACCAAACCAATTCTTATCTCTT 57.344 30.769 0.00 0.00 0.00 2.85
1836 10916 8.477419 TTCACCAAACCAATTCTTATCTCTTT 57.523 30.769 0.00 0.00 0.00 2.52
1837 10917 8.110860 TCACCAAACCAATTCTTATCTCTTTC 57.889 34.615 0.00 0.00 0.00 2.62
1838 10918 7.944554 TCACCAAACCAATTCTTATCTCTTTCT 59.055 33.333 0.00 0.00 0.00 2.52
1839 10919 8.025445 CACCAAACCAATTCTTATCTCTTTCTG 58.975 37.037 0.00 0.00 0.00 3.02
1840 10920 7.944554 ACCAAACCAATTCTTATCTCTTTCTGA 59.055 33.333 0.00 0.00 0.00 3.27
1841 10921 8.796475 CCAAACCAATTCTTATCTCTTTCTGAA 58.204 33.333 0.00 0.00 0.00 3.02
1844 10924 9.799106 AACCAATTCTTATCTCTTTCTGAAAGA 57.201 29.630 26.29 26.29 44.82 2.52
1948 11028 8.485578 AGAATGGGTTTAGTTGGTTAAATTCA 57.514 30.769 0.00 0.00 0.00 2.57
1949 11029 8.929487 AGAATGGGTTTAGTTGGTTAAATTCAA 58.071 29.630 0.00 0.00 0.00 2.69
1950 11030 9.549078 GAATGGGTTTAGTTGGTTAAATTCAAA 57.451 29.630 0.00 0.00 0.00 2.69
1951 11031 9.907229 AATGGGTTTAGTTGGTTAAATTCAAAA 57.093 25.926 0.00 0.00 0.00 2.44
1952 11032 9.907229 ATGGGTTTAGTTGGTTAAATTCAAAAA 57.093 25.926 0.00 0.00 0.00 1.94
1953 11033 9.384764 TGGGTTTAGTTGGTTAAATTCAAAAAG 57.615 29.630 0.00 0.00 0.00 2.27
1954 11034 9.386010 GGGTTTAGTTGGTTAAATTCAAAAAGT 57.614 29.630 0.00 0.00 0.00 2.66
1975 11055 9.783256 AAAAGTTAATAAAATAACTAGGCAGCG 57.217 29.630 0.00 0.00 43.52 5.18
1976 11056 8.726870 AAGTTAATAAAATAACTAGGCAGCGA 57.273 30.769 0.00 0.00 43.52 4.93
1977 11057 8.726870 AGTTAATAAAATAACTAGGCAGCGAA 57.273 30.769 0.00 0.00 42.73 4.70
1978 11058 8.827677 AGTTAATAAAATAACTAGGCAGCGAAG 58.172 33.333 0.00 0.00 42.73 3.79
1979 11059 8.610035 GTTAATAAAATAACTAGGCAGCGAAGT 58.390 33.333 0.00 0.00 33.84 3.01
1980 11060 7.625828 AATAAAATAACTAGGCAGCGAAGTT 57.374 32.000 13.74 13.74 37.27 2.66
1981 11061 8.726870 AATAAAATAACTAGGCAGCGAAGTTA 57.273 30.769 16.44 16.44 39.36 2.24
1982 11062 8.904099 ATAAAATAACTAGGCAGCGAAGTTAT 57.096 30.769 18.64 18.64 44.38 1.89
1985 11065 7.625828 AATAACTAGGCAGCGAAGTTATTTT 57.374 32.000 24.62 13.73 46.57 1.82
1986 11066 8.726870 AATAACTAGGCAGCGAAGTTATTTTA 57.273 30.769 24.62 8.32 46.57 1.52
1987 11067 8.904099 ATAACTAGGCAGCGAAGTTATTTTAT 57.096 30.769 18.64 5.52 41.41 1.40
1988 11068 7.625828 AACTAGGCAGCGAAGTTATTTTATT 57.374 32.000 8.81 0.00 31.84 1.40
1989 11069 8.726870 AACTAGGCAGCGAAGTTATTTTATTA 57.273 30.769 8.81 0.00 31.84 0.98
1990 11070 8.139521 ACTAGGCAGCGAAGTTATTTTATTAC 57.860 34.615 0.00 0.00 0.00 1.89
1991 11071 6.373186 AGGCAGCGAAGTTATTTTATTACC 57.627 37.500 0.00 0.00 0.00 2.85
2091 11171 9.651913 TTTCTTTAAAACAAAGATGAAACAGCT 57.348 25.926 0.62 0.00 36.30 4.24
2092 11172 8.856490 TCTTTAAAACAAAGATGAAACAGCTC 57.144 30.769 0.00 0.00 31.86 4.09
2093 11173 8.686334 TCTTTAAAACAAAGATGAAACAGCTCT 58.314 29.630 0.00 0.00 31.86 4.09
2094 11174 8.856490 TTTAAAACAAAGATGAAACAGCTCTC 57.144 30.769 0.00 0.00 0.00 3.20
2095 11175 6.705863 AAAACAAAGATGAAACAGCTCTCT 57.294 33.333 0.00 0.00 0.00 3.10
2096 11176 6.705863 AAACAAAGATGAAACAGCTCTCTT 57.294 33.333 0.00 0.00 0.00 2.85
2097 11177 5.686159 ACAAAGATGAAACAGCTCTCTTG 57.314 39.130 0.00 0.00 0.00 3.02
2098 11178 5.371526 ACAAAGATGAAACAGCTCTCTTGA 58.628 37.500 0.00 0.00 0.00 3.02
2099 11179 6.002704 ACAAAGATGAAACAGCTCTCTTGAT 58.997 36.000 0.00 0.00 0.00 2.57
2100 11180 6.149142 ACAAAGATGAAACAGCTCTCTTGATC 59.851 38.462 0.00 0.00 0.00 2.92
2101 11181 4.768583 AGATGAAACAGCTCTCTTGATCC 58.231 43.478 0.00 0.00 0.00 3.36
2102 11182 4.224594 AGATGAAACAGCTCTCTTGATCCA 59.775 41.667 0.00 0.00 0.00 3.41
2103 11183 3.935315 TGAAACAGCTCTCTTGATCCAG 58.065 45.455 0.00 0.00 0.00 3.86
2104 11184 3.326006 TGAAACAGCTCTCTTGATCCAGT 59.674 43.478 0.00 0.00 0.00 4.00
2105 11185 4.202398 TGAAACAGCTCTCTTGATCCAGTT 60.202 41.667 0.00 0.00 0.00 3.16
2106 11186 3.608316 ACAGCTCTCTTGATCCAGTTC 57.392 47.619 0.00 0.00 0.00 3.01
2107 11187 2.235898 ACAGCTCTCTTGATCCAGTTCC 59.764 50.000 0.00 0.00 0.00 3.62
2108 11188 2.235650 CAGCTCTCTTGATCCAGTTCCA 59.764 50.000 0.00 0.00 0.00 3.53
2109 11189 3.113824 AGCTCTCTTGATCCAGTTCCAT 58.886 45.455 0.00 0.00 0.00 3.41
2110 11190 4.100653 CAGCTCTCTTGATCCAGTTCCATA 59.899 45.833 0.00 0.00 0.00 2.74
2111 11191 4.718774 AGCTCTCTTGATCCAGTTCCATAA 59.281 41.667 0.00 0.00 0.00 1.90
2112 11192 5.369110 AGCTCTCTTGATCCAGTTCCATAAT 59.631 40.000 0.00 0.00 0.00 1.28
2113 11193 6.060788 GCTCTCTTGATCCAGTTCCATAATT 58.939 40.000 0.00 0.00 0.00 1.40
2114 11194 7.071698 AGCTCTCTTGATCCAGTTCCATAATTA 59.928 37.037 0.00 0.00 0.00 1.40
2115 11195 7.716998 GCTCTCTTGATCCAGTTCCATAATTAA 59.283 37.037 0.00 0.00 0.00 1.40
2116 11196 8.964476 TCTCTTGATCCAGTTCCATAATTAAC 57.036 34.615 0.00 0.00 0.00 2.01
2117 11197 8.772250 TCTCTTGATCCAGTTCCATAATTAACT 58.228 33.333 0.00 0.00 36.38 2.24
2128 11208 9.739276 AGTTCCATAATTAACTGATTGAGTGAA 57.261 29.630 0.00 0.00 34.70 3.18
2132 11212 9.956720 CCATAATTAACTGATTGAGTGAATTCC 57.043 33.333 2.23 0.00 40.55 3.01
2136 11216 9.865321 AATTAACTGATTGAGTGAATTCCAATG 57.135 29.630 11.64 3.60 40.55 2.82
2137 11217 8.634335 TTAACTGATTGAGTGAATTCCAATGA 57.366 30.769 11.64 4.63 34.02 2.57
2138 11218 7.528996 AACTGATTGAGTGAATTCCAATGAA 57.471 32.000 11.64 0.00 34.02 2.57
2139 11219 7.528996 ACTGATTGAGTGAATTCCAATGAAA 57.471 32.000 11.64 0.00 30.93 2.69
2140 11220 7.954835 ACTGATTGAGTGAATTCCAATGAAAA 58.045 30.769 11.64 0.00 30.93 2.29
2141 11221 7.869429 ACTGATTGAGTGAATTCCAATGAAAAC 59.131 33.333 11.64 0.00 30.93 2.43
2142 11222 7.153985 TGATTGAGTGAATTCCAATGAAAACC 58.846 34.615 11.64 0.49 33.32 3.27
2143 11223 6.729690 TTGAGTGAATTCCAATGAAAACCT 57.270 33.333 2.27 0.00 33.32 3.50
2144 11224 7.831691 TTGAGTGAATTCCAATGAAAACCTA 57.168 32.000 2.27 0.00 33.32 3.08
2145 11225 8.421249 TTGAGTGAATTCCAATGAAAACCTAT 57.579 30.769 2.27 0.00 33.32 2.57
2146 11226 7.829725 TGAGTGAATTCCAATGAAAACCTATG 58.170 34.615 2.27 0.00 33.32 2.23
2147 11227 7.451255 TGAGTGAATTCCAATGAAAACCTATGT 59.549 33.333 2.27 0.00 33.32 2.29
2148 11228 8.193953 AGTGAATTCCAATGAAAACCTATGTT 57.806 30.769 2.27 0.00 33.32 2.71
2149 11229 8.650490 AGTGAATTCCAATGAAAACCTATGTTT 58.350 29.630 2.27 0.00 46.50 2.83
2150 11230 9.921637 GTGAATTCCAATGAAAACCTATGTTTA 57.078 29.630 2.27 0.00 43.80 2.01
2236 11316 8.521170 ACCTAAGTTTTAGAATAGCAATTCCC 57.479 34.615 0.00 0.00 42.20 3.97
2237 11317 8.113462 ACCTAAGTTTTAGAATAGCAATTCCCA 58.887 33.333 0.00 0.00 42.20 4.37
2238 11318 9.136323 CCTAAGTTTTAGAATAGCAATTCCCAT 57.864 33.333 0.00 0.00 42.20 4.00
2241 11321 8.011844 AGTTTTAGAATAGCAATTCCCATTCC 57.988 34.615 0.00 0.00 42.20 3.01
2242 11322 7.619302 AGTTTTAGAATAGCAATTCCCATTCCA 59.381 33.333 0.00 0.00 42.20 3.53
2243 11323 6.959639 TTAGAATAGCAATTCCCATTCCAC 57.040 37.500 0.00 0.00 42.20 4.02
2244 11324 4.218312 AGAATAGCAATTCCCATTCCACC 58.782 43.478 0.00 0.00 42.20 4.61
2245 11325 2.452600 TAGCAATTCCCATTCCACCC 57.547 50.000 0.00 0.00 0.00 4.61
2246 11326 0.413037 AGCAATTCCCATTCCACCCA 59.587 50.000 0.00 0.00 0.00 4.51
2247 11327 1.203288 AGCAATTCCCATTCCACCCAA 60.203 47.619 0.00 0.00 0.00 4.12
2248 11328 1.627834 GCAATTCCCATTCCACCCAAA 59.372 47.619 0.00 0.00 0.00 3.28
2249 11329 2.039613 GCAATTCCCATTCCACCCAAAA 59.960 45.455 0.00 0.00 0.00 2.44
2250 11330 3.673902 CAATTCCCATTCCACCCAAAAC 58.326 45.455 0.00 0.00 0.00 2.43
2251 11331 2.785357 TTCCCATTCCACCCAAAACT 57.215 45.000 0.00 0.00 0.00 2.66
2252 11332 2.785357 TCCCATTCCACCCAAAACTT 57.215 45.000 0.00 0.00 0.00 2.66
2253 11333 3.053359 TCCCATTCCACCCAAAACTTT 57.947 42.857 0.00 0.00 0.00 2.66
2254 11334 4.200447 TCCCATTCCACCCAAAACTTTA 57.800 40.909 0.00 0.00 0.00 1.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
15 17 8.641498 ATTTTAGAAATGGTGTCACATTCTCT 57.359 30.769 16.53 10.14 40.01 3.10
98 100 9.553418 GTTTGCAATTTTTAAAAGTGTTCACAT 57.447 25.926 17.14 0.00 0.00 3.21
220 223 9.772973 AAATTGTTCAGAAGTTAAAAATACCCC 57.227 29.630 0.00 0.00 0.00 4.95
368 371 9.372369 ACTTTTCATGTTTTCGGAAAATGTTTA 57.628 25.926 17.98 4.83 39.13 2.01
369 372 8.262715 ACTTTTCATGTTTTCGGAAAATGTTT 57.737 26.923 17.98 2.58 39.13 2.83
370 373 7.841915 ACTTTTCATGTTTTCGGAAAATGTT 57.158 28.000 17.98 4.79 39.13 2.71
371 374 7.841915 AACTTTTCATGTTTTCGGAAAATGT 57.158 28.000 17.98 8.05 39.13 2.71
372 375 9.553418 AAAAACTTTTCATGTTTTCGGAAAATG 57.447 25.926 17.98 13.32 43.94 2.32
496 499 8.183536 GCCTGTTTTTGAAATGTTCATTTTTCT 58.816 29.630 11.30 0.00 39.84 2.52
497 500 8.183536 AGCCTGTTTTTGAAATGTTCATTTTTC 58.816 29.630 11.30 2.94 39.84 2.29
498 501 8.054152 AGCCTGTTTTTGAAATGTTCATTTTT 57.946 26.923 11.30 0.00 39.84 1.94
499 502 7.628769 AGCCTGTTTTTGAAATGTTCATTTT 57.371 28.000 11.30 0.00 39.84 1.82
500 503 7.226523 GGTAGCCTGTTTTTGAAATGTTCATTT 59.773 33.333 10.04 10.04 39.84 2.32
501 504 6.705825 GGTAGCCTGTTTTTGAAATGTTCATT 59.294 34.615 0.00 0.00 39.84 2.57
502 505 6.041979 AGGTAGCCTGTTTTTGAAATGTTCAT 59.958 34.615 0.00 0.00 33.85 2.57
503 506 5.362430 AGGTAGCCTGTTTTTGAAATGTTCA 59.638 36.000 0.00 0.00 32.50 3.18
504 507 5.842907 AGGTAGCCTGTTTTTGAAATGTTC 58.157 37.500 0.00 0.00 29.57 3.18
505 508 5.869649 AGGTAGCCTGTTTTTGAAATGTT 57.130 34.783 0.00 0.00 29.57 2.71
506 509 6.068670 ACTAGGTAGCCTGTTTTTGAAATGT 58.931 36.000 0.00 0.00 34.61 2.71
507 510 6.575162 ACTAGGTAGCCTGTTTTTGAAATG 57.425 37.500 0.00 0.00 34.61 2.32
508 511 6.549736 ACAACTAGGTAGCCTGTTTTTGAAAT 59.450 34.615 0.00 0.00 34.61 2.17
509 512 5.889289 ACAACTAGGTAGCCTGTTTTTGAAA 59.111 36.000 0.00 0.00 34.61 2.69
510 513 5.298276 CACAACTAGGTAGCCTGTTTTTGAA 59.702 40.000 0.00 0.00 34.61 2.69
511 514 4.819630 CACAACTAGGTAGCCTGTTTTTGA 59.180 41.667 0.00 0.00 34.61 2.69
512 515 4.023193 CCACAACTAGGTAGCCTGTTTTTG 60.023 45.833 0.00 0.00 34.61 2.44
513 516 4.142038 CCACAACTAGGTAGCCTGTTTTT 58.858 43.478 0.00 0.00 34.61 1.94
514 517 3.497942 CCCACAACTAGGTAGCCTGTTTT 60.498 47.826 0.00 0.00 34.61 2.43
515 518 2.039879 CCCACAACTAGGTAGCCTGTTT 59.960 50.000 0.00 0.00 34.61 2.83
516 519 1.628846 CCCACAACTAGGTAGCCTGTT 59.371 52.381 0.00 0.00 34.61 3.16
517 520 1.276622 CCCACAACTAGGTAGCCTGT 58.723 55.000 0.00 0.00 34.61 4.00
518 521 0.541863 CCCCACAACTAGGTAGCCTG 59.458 60.000 0.00 0.00 34.61 4.85
519 522 0.118547 ACCCCACAACTAGGTAGCCT 59.881 55.000 0.00 0.00 37.71 4.58
520 523 1.761198 CTACCCCACAACTAGGTAGCC 59.239 57.143 2.71 0.00 44.85 3.93
523 526 2.560386 CCCACTACCCCACAACTAGGTA 60.560 54.545 0.00 0.00 35.02 3.08
524 527 1.652947 CCACTACCCCACAACTAGGT 58.347 55.000 0.00 0.00 37.69 3.08
525 528 0.909623 CCCACTACCCCACAACTAGG 59.090 60.000 0.00 0.00 0.00 3.02
526 529 0.252197 GCCCACTACCCCACAACTAG 59.748 60.000 0.00 0.00 0.00 2.57
527 530 0.178885 AGCCCACTACCCCACAACTA 60.179 55.000 0.00 0.00 0.00 2.24
528 531 1.463410 AGCCCACTACCCCACAACT 60.463 57.895 0.00 0.00 0.00 3.16
529 532 1.303317 CAGCCCACTACCCCACAAC 60.303 63.158 0.00 0.00 0.00 3.32
530 533 2.534396 CCAGCCCACTACCCCACAA 61.534 63.158 0.00 0.00 0.00 3.33
531 534 2.933287 CCAGCCCACTACCCCACA 60.933 66.667 0.00 0.00 0.00 4.17
532 535 4.426313 GCCAGCCCACTACCCCAC 62.426 72.222 0.00 0.00 0.00 4.61
543 546 1.250840 AACGAGAATTTGGGCCAGCC 61.251 55.000 6.23 0.00 0.00 4.85
544 547 1.401905 CTAACGAGAATTTGGGCCAGC 59.598 52.381 6.23 0.00 0.00 4.85
545 548 1.401905 GCTAACGAGAATTTGGGCCAG 59.598 52.381 6.23 0.00 0.00 4.85
546 549 1.459450 GCTAACGAGAATTTGGGCCA 58.541 50.000 0.00 0.00 0.00 5.36
547 550 0.738975 GGCTAACGAGAATTTGGGCC 59.261 55.000 0.00 0.00 0.00 5.80
548 551 1.401905 CAGGCTAACGAGAATTTGGGC 59.598 52.381 0.00 0.00 0.00 5.36
549 552 2.017049 CCAGGCTAACGAGAATTTGGG 58.983 52.381 0.00 0.00 0.00 4.12
550 553 2.939103 CTCCAGGCTAACGAGAATTTGG 59.061 50.000 0.00 0.00 0.00 3.28
551 554 3.600388 ACTCCAGGCTAACGAGAATTTG 58.400 45.455 11.20 0.00 0.00 2.32
552 555 3.983044 ACTCCAGGCTAACGAGAATTT 57.017 42.857 11.20 0.00 0.00 1.82
553 556 3.676324 CGAACTCCAGGCTAACGAGAATT 60.676 47.826 11.20 0.00 0.00 2.17
554 557 2.159226 CGAACTCCAGGCTAACGAGAAT 60.159 50.000 11.20 1.89 0.00 2.40
555 558 1.201647 CGAACTCCAGGCTAACGAGAA 59.798 52.381 11.20 0.00 0.00 2.87
556 559 0.809385 CGAACTCCAGGCTAACGAGA 59.191 55.000 11.20 0.00 0.00 4.04
557 560 0.802607 GCGAACTCCAGGCTAACGAG 60.803 60.000 0.00 0.00 0.00 4.18
558 561 1.214589 GCGAACTCCAGGCTAACGA 59.785 57.895 0.00 0.00 0.00 3.85
559 562 1.810030 GGCGAACTCCAGGCTAACG 60.810 63.158 0.00 0.00 0.00 3.18
560 563 1.019805 GTGGCGAACTCCAGGCTAAC 61.020 60.000 0.00 0.00 36.67 2.34
703 706 1.895798 TGGAAGTCATCAGTTCGAGCT 59.104 47.619 0.00 0.00 33.22 4.09
747 750 3.240302 CGGGGAAGGGATATAACTCAGT 58.760 50.000 0.00 0.00 0.00 3.41
784 5036 6.544564 CCCTTTGCCTTAGGATTCGTTAATTA 59.455 38.462 0.69 0.00 34.56 1.40
814 5066 2.979678 AGGAAGAGTGGCCTTGAGTTTA 59.020 45.455 3.32 0.00 0.00 2.01
886 5138 3.136443 AGGACCAGTTGACACTTGAATCA 59.864 43.478 0.00 0.00 0.00 2.57
894 5146 3.587797 TTCGATAGGACCAGTTGACAC 57.412 47.619 0.00 0.00 0.00 3.67
1006 10053 7.254727 GGAATAGAACATGCTGAACAAGATCTC 60.255 40.741 0.00 0.00 32.27 2.75
1032 10079 3.068307 CGGGTTCTTCTCCTACCAGTATG 59.932 52.174 0.00 0.00 33.51 2.39
1126 10173 6.151144 CCTTCGAAAATGGTAAGATCTTTGGT 59.849 38.462 14.36 0.00 0.00 3.67
1145 10192 1.344065 TGTAGCCCTTGTTCCTTCGA 58.656 50.000 0.00 0.00 0.00 3.71
1155 10202 7.161404 GGAAATTGAAAAGAAATGTAGCCCTT 58.839 34.615 0.00 0.00 0.00 3.95
1471 10551 3.013921 GGTCAACCCGCTTCAAATATGA 58.986 45.455 0.00 0.00 0.00 2.15
1612 10692 5.869579 AGTACTATTAGTTACCGATCCCGA 58.130 41.667 0.85 0.00 38.22 5.14
1673 10753 8.940397 AAATAGTCCTTTCCTTTTTCTGATCA 57.060 30.769 0.00 0.00 0.00 2.92
1674 10754 9.631452 CAAAATAGTCCTTTCCTTTTTCTGATC 57.369 33.333 0.00 0.00 0.00 2.92
1675 10755 9.147732 ACAAAATAGTCCTTTCCTTTTTCTGAT 57.852 29.630 0.00 0.00 0.00 2.90
1676 10756 8.533569 ACAAAATAGTCCTTTCCTTTTTCTGA 57.466 30.769 0.00 0.00 0.00 3.27
1677 10757 9.249457 GAACAAAATAGTCCTTTCCTTTTTCTG 57.751 33.333 0.00 0.00 0.00 3.02
1678 10758 8.421784 GGAACAAAATAGTCCTTTCCTTTTTCT 58.578 33.333 0.00 0.00 31.54 2.52
1679 10759 8.421784 AGGAACAAAATAGTCCTTTCCTTTTTC 58.578 33.333 0.00 0.00 39.91 2.29
1680 10760 8.319057 AGGAACAAAATAGTCCTTTCCTTTTT 57.681 30.769 0.00 0.00 39.91 1.94
1681 10761 7.914427 AGGAACAAAATAGTCCTTTCCTTTT 57.086 32.000 0.00 0.00 39.91 2.27
1682 10762 7.176865 GCTAGGAACAAAATAGTCCTTTCCTTT 59.823 37.037 6.03 0.00 39.91 3.11
1683 10763 6.659668 GCTAGGAACAAAATAGTCCTTTCCTT 59.340 38.462 6.03 0.00 39.91 3.36
1684 10764 6.181190 GCTAGGAACAAAATAGTCCTTTCCT 58.819 40.000 6.00 6.00 44.06 3.36
1685 10765 5.357314 GGCTAGGAACAAAATAGTCCTTTCC 59.643 44.000 0.00 0.00 33.96 3.13
1686 10766 5.357314 GGGCTAGGAACAAAATAGTCCTTTC 59.643 44.000 0.00 0.00 38.12 2.62
1687 10767 5.262009 GGGCTAGGAACAAAATAGTCCTTT 58.738 41.667 0.00 0.00 38.12 3.11
1688 10768 4.325109 GGGGCTAGGAACAAAATAGTCCTT 60.325 45.833 2.44 0.00 40.46 3.36
1689 10769 3.202373 GGGGCTAGGAACAAAATAGTCCT 59.798 47.826 2.44 0.00 40.46 3.85
1690 10770 3.202373 AGGGGCTAGGAACAAAATAGTCC 59.798 47.826 0.00 0.00 40.00 3.85
1691 10771 4.200092 CAGGGGCTAGGAACAAAATAGTC 58.800 47.826 0.00 0.00 0.00 2.59
1692 10772 3.053619 CCAGGGGCTAGGAACAAAATAGT 60.054 47.826 0.00 0.00 0.00 2.12
1693 10773 3.555966 CCAGGGGCTAGGAACAAAATAG 58.444 50.000 0.00 0.00 0.00 1.73
1694 10774 2.243736 CCCAGGGGCTAGGAACAAAATA 59.756 50.000 0.00 0.00 0.00 1.40
1695 10775 1.007118 CCCAGGGGCTAGGAACAAAAT 59.993 52.381 0.00 0.00 0.00 1.82
1696 10776 0.407918 CCCAGGGGCTAGGAACAAAA 59.592 55.000 0.00 0.00 0.00 2.44
1697 10777 1.506028 CCCCAGGGGCTAGGAACAAA 61.506 60.000 13.35 0.00 35.35 2.83
1698 10778 1.928567 CCCCAGGGGCTAGGAACAA 60.929 63.158 13.35 0.00 35.35 2.83
1699 10779 2.286121 CCCCAGGGGCTAGGAACA 60.286 66.667 13.35 0.00 35.35 3.18
1709 10789 1.645710 ATTCTATCTACGCCCCAGGG 58.354 55.000 0.00 0.00 38.57 4.45
1710 10790 4.087182 TCTAATTCTATCTACGCCCCAGG 58.913 47.826 0.00 0.00 0.00 4.45
1711 10791 5.923733 ATCTAATTCTATCTACGCCCCAG 57.076 43.478 0.00 0.00 0.00 4.45
1712 10792 7.786046 TTTATCTAATTCTATCTACGCCCCA 57.214 36.000 0.00 0.00 0.00 4.96
1755 10835 7.066645 ACGGAATTACTTTGGTCTAATTTAGGC 59.933 37.037 3.66 1.47 0.00 3.93
1756 10836 8.502105 ACGGAATTACTTTGGTCTAATTTAGG 57.498 34.615 3.66 0.00 0.00 2.69
1757 10837 9.379791 AGACGGAATTACTTTGGTCTAATTTAG 57.620 33.333 0.00 0.00 33.33 1.85
1758 10838 9.158233 CAGACGGAATTACTTTGGTCTAATTTA 57.842 33.333 0.00 0.00 33.73 1.40
1759 10839 7.361799 GCAGACGGAATTACTTTGGTCTAATTT 60.362 37.037 0.00 0.00 33.73 1.82
1760 10840 6.093633 GCAGACGGAATTACTTTGGTCTAATT 59.906 38.462 0.00 0.00 33.73 1.40
1761 10841 5.585047 GCAGACGGAATTACTTTGGTCTAAT 59.415 40.000 0.00 0.00 33.73 1.73
1762 10842 4.933400 GCAGACGGAATTACTTTGGTCTAA 59.067 41.667 0.00 0.00 33.73 2.10
1763 10843 4.222145 AGCAGACGGAATTACTTTGGTCTA 59.778 41.667 0.00 0.00 33.73 2.59
1764 10844 3.008049 AGCAGACGGAATTACTTTGGTCT 59.992 43.478 0.00 0.00 35.28 3.85
1765 10845 3.335579 AGCAGACGGAATTACTTTGGTC 58.664 45.455 0.00 0.00 0.00 4.02
1766 10846 3.418684 AGCAGACGGAATTACTTTGGT 57.581 42.857 0.00 0.00 0.00 3.67
1767 10847 4.755411 TCTAGCAGACGGAATTACTTTGG 58.245 43.478 0.00 0.00 0.00 3.28
1768 10848 6.910536 ATTCTAGCAGACGGAATTACTTTG 57.089 37.500 0.00 0.00 0.00 2.77
1769 10849 8.475639 TCTTATTCTAGCAGACGGAATTACTTT 58.524 33.333 0.00 0.00 32.78 2.66
1770 10850 8.008513 TCTTATTCTAGCAGACGGAATTACTT 57.991 34.615 0.00 0.00 32.78 2.24
1771 10851 7.584122 TCTTATTCTAGCAGACGGAATTACT 57.416 36.000 0.00 0.00 32.78 2.24
1772 10852 8.644318 TTTCTTATTCTAGCAGACGGAATTAC 57.356 34.615 0.00 0.00 32.78 1.89
1773 10853 9.661563 TTTTTCTTATTCTAGCAGACGGAATTA 57.338 29.630 0.00 0.00 32.78 1.40
1774 10854 8.561738 TTTTTCTTATTCTAGCAGACGGAATT 57.438 30.769 0.00 0.00 32.78 2.17
1775 10855 7.201652 GCTTTTTCTTATTCTAGCAGACGGAAT 60.202 37.037 0.00 0.00 34.59 3.01
1776 10856 6.092259 GCTTTTTCTTATTCTAGCAGACGGAA 59.908 38.462 0.00 0.00 0.00 4.30
1777 10857 5.581085 GCTTTTTCTTATTCTAGCAGACGGA 59.419 40.000 0.00 0.00 0.00 4.69
1778 10858 5.500931 CGCTTTTTCTTATTCTAGCAGACGG 60.501 44.000 0.00 0.00 0.00 4.79
1779 10859 5.484958 CGCTTTTTCTTATTCTAGCAGACG 58.515 41.667 0.00 0.00 0.00 4.18
1780 10860 5.064071 AGCGCTTTTTCTTATTCTAGCAGAC 59.936 40.000 2.64 0.00 0.00 3.51
1781 10861 5.178797 AGCGCTTTTTCTTATTCTAGCAGA 58.821 37.500 2.64 0.00 0.00 4.26
1782 10862 5.476752 AGCGCTTTTTCTTATTCTAGCAG 57.523 39.130 2.64 0.00 0.00 4.24
1783 10863 5.880054 AAGCGCTTTTTCTTATTCTAGCA 57.120 34.783 18.98 0.00 0.00 3.49
1784 10864 5.739630 GGAAAGCGCTTTTTCTTATTCTAGC 59.260 40.000 34.01 17.04 37.26 3.42
1785 10865 5.960105 CGGAAAGCGCTTTTTCTTATTCTAG 59.040 40.000 34.01 14.18 37.26 2.43
1786 10866 5.640357 TCGGAAAGCGCTTTTTCTTATTCTA 59.360 36.000 34.01 10.44 37.26 2.10
1787 10867 4.454504 TCGGAAAGCGCTTTTTCTTATTCT 59.545 37.500 34.01 10.19 37.26 2.40
1788 10868 4.719040 TCGGAAAGCGCTTTTTCTTATTC 58.281 39.130 34.01 19.51 37.26 1.75
1789 10869 4.759516 TCGGAAAGCGCTTTTTCTTATT 57.240 36.364 34.01 11.79 37.26 1.40
1790 10870 4.965119 ATCGGAAAGCGCTTTTTCTTAT 57.035 36.364 34.01 20.09 37.26 1.73
1791 10871 4.214545 TGAATCGGAAAGCGCTTTTTCTTA 59.785 37.500 34.01 18.89 37.26 2.10
1792 10872 3.004315 TGAATCGGAAAGCGCTTTTTCTT 59.996 39.130 34.01 23.59 37.26 2.52
1793 10873 2.552315 TGAATCGGAAAGCGCTTTTTCT 59.448 40.909 34.01 14.63 37.26 2.52
1794 10874 2.656897 GTGAATCGGAAAGCGCTTTTTC 59.343 45.455 34.01 29.78 36.55 2.29
1795 10875 2.607038 GGTGAATCGGAAAGCGCTTTTT 60.607 45.455 34.01 24.32 32.11 1.94
1796 10876 1.068541 GGTGAATCGGAAAGCGCTTTT 60.069 47.619 34.01 19.53 32.11 2.27
1797 10877 0.521735 GGTGAATCGGAAAGCGCTTT 59.478 50.000 34.16 34.16 35.14 3.51
1798 10878 0.605319 TGGTGAATCGGAAAGCGCTT 60.605 50.000 18.98 18.98 0.00 4.68
1799 10879 0.605319 TTGGTGAATCGGAAAGCGCT 60.605 50.000 2.64 2.64 0.00 5.92
1800 10880 0.239879 TTTGGTGAATCGGAAAGCGC 59.760 50.000 0.00 0.00 0.00 5.92
1801 10881 1.401018 GGTTTGGTGAATCGGAAAGCG 60.401 52.381 0.00 0.00 0.00 4.68
1802 10882 1.611491 TGGTTTGGTGAATCGGAAAGC 59.389 47.619 0.00 0.00 0.00 3.51
1803 10883 4.519540 ATTGGTTTGGTGAATCGGAAAG 57.480 40.909 0.00 0.00 0.00 2.62
1804 10884 4.586841 AGAATTGGTTTGGTGAATCGGAAA 59.413 37.500 0.00 0.00 0.00 3.13
1805 10885 4.148838 AGAATTGGTTTGGTGAATCGGAA 58.851 39.130 0.00 0.00 0.00 4.30
1806 10886 3.761897 AGAATTGGTTTGGTGAATCGGA 58.238 40.909 0.00 0.00 0.00 4.55
1807 10887 4.519540 AAGAATTGGTTTGGTGAATCGG 57.480 40.909 0.00 0.00 0.00 4.18
1808 10888 7.066284 AGAGATAAGAATTGGTTTGGTGAATCG 59.934 37.037 0.00 0.00 0.00 3.34
1809 10889 8.286191 AGAGATAAGAATTGGTTTGGTGAATC 57.714 34.615 0.00 0.00 0.00 2.52
1810 10890 8.655935 AAGAGATAAGAATTGGTTTGGTGAAT 57.344 30.769 0.00 0.00 0.00 2.57
1811 10891 8.477419 AAAGAGATAAGAATTGGTTTGGTGAA 57.523 30.769 0.00 0.00 0.00 3.18
1812 10892 7.944554 AGAAAGAGATAAGAATTGGTTTGGTGA 59.055 33.333 0.00 0.00 0.00 4.02
1813 10893 8.025445 CAGAAAGAGATAAGAATTGGTTTGGTG 58.975 37.037 0.00 0.00 0.00 4.17
1814 10894 7.944554 TCAGAAAGAGATAAGAATTGGTTTGGT 59.055 33.333 0.00 0.00 0.00 3.67
1815 10895 8.340618 TCAGAAAGAGATAAGAATTGGTTTGG 57.659 34.615 0.00 0.00 0.00 3.28
1818 10898 9.799106 TCTTTCAGAAAGAGATAAGAATTGGTT 57.201 29.630 19.96 0.00 42.31 3.67
1922 11002 8.929487 TGAATTTAACCAACTAAACCCATTCTT 58.071 29.630 0.00 0.00 0.00 2.52
1923 11003 8.485578 TGAATTTAACCAACTAAACCCATTCT 57.514 30.769 0.00 0.00 0.00 2.40
1924 11004 9.549078 TTTGAATTTAACCAACTAAACCCATTC 57.451 29.630 0.00 0.00 0.00 2.67
1925 11005 9.907229 TTTTGAATTTAACCAACTAAACCCATT 57.093 25.926 0.00 0.00 0.00 3.16
1926 11006 9.907229 TTTTTGAATTTAACCAACTAAACCCAT 57.093 25.926 0.00 0.00 0.00 4.00
1927 11007 9.384764 CTTTTTGAATTTAACCAACTAAACCCA 57.615 29.630 0.00 0.00 0.00 4.51
1928 11008 9.386010 ACTTTTTGAATTTAACCAACTAAACCC 57.614 29.630 0.00 0.00 0.00 4.11
1949 11029 9.783256 CGCTGCCTAGTTATTTTATTAACTTTT 57.217 29.630 2.54 0.00 41.47 2.27
1950 11030 9.169592 TCGCTGCCTAGTTATTTTATTAACTTT 57.830 29.630 2.54 0.00 41.47 2.66
1951 11031 8.726870 TCGCTGCCTAGTTATTTTATTAACTT 57.273 30.769 2.54 0.00 41.47 2.66
1952 11032 8.726870 TTCGCTGCCTAGTTATTTTATTAACT 57.273 30.769 0.00 2.77 43.19 2.24
1953 11033 8.610035 ACTTCGCTGCCTAGTTATTTTATTAAC 58.390 33.333 0.00 0.00 33.20 2.01
1954 11034 8.726870 ACTTCGCTGCCTAGTTATTTTATTAA 57.273 30.769 0.00 0.00 0.00 1.40
1955 11035 8.726870 AACTTCGCTGCCTAGTTATTTTATTA 57.273 30.769 11.05 0.00 30.75 0.98
1956 11036 7.625828 AACTTCGCTGCCTAGTTATTTTATT 57.374 32.000 11.05 0.00 30.75 1.40
1957 11037 8.904099 ATAACTTCGCTGCCTAGTTATTTTAT 57.096 30.769 19.89 7.57 40.40 1.40
1958 11038 8.726870 AATAACTTCGCTGCCTAGTTATTTTA 57.273 30.769 25.47 10.18 45.63 1.52
1959 11039 7.625828 AATAACTTCGCTGCCTAGTTATTTT 57.374 32.000 25.47 15.15 45.63 1.82
1962 11042 8.904099 ATAAAATAACTTCGCTGCCTAGTTAT 57.096 30.769 19.89 19.89 43.37 1.89
1963 11043 8.726870 AATAAAATAACTTCGCTGCCTAGTTA 57.273 30.769 17.91 17.91 38.36 2.24
1964 11044 7.625828 AATAAAATAACTTCGCTGCCTAGTT 57.374 32.000 15.45 15.45 36.23 2.24
1965 11045 7.226128 GGTAATAAAATAACTTCGCTGCCTAGT 59.774 37.037 0.00 0.00 0.00 2.57
1966 11046 7.441458 AGGTAATAAAATAACTTCGCTGCCTAG 59.559 37.037 0.00 0.00 0.00 3.02
1967 11047 7.277396 AGGTAATAAAATAACTTCGCTGCCTA 58.723 34.615 0.00 0.00 0.00 3.93
1968 11048 6.120220 AGGTAATAAAATAACTTCGCTGCCT 58.880 36.000 0.00 0.00 0.00 4.75
1969 11049 6.373186 AGGTAATAAAATAACTTCGCTGCC 57.627 37.500 0.00 0.00 0.00 4.85
1970 11050 9.946165 ATTTAGGTAATAAAATAACTTCGCTGC 57.054 29.630 0.00 0.00 36.94 5.25
2065 11145 9.651913 AGCTGTTTCATCTTTGTTTTAAAGAAA 57.348 25.926 6.23 0.31 39.43 2.52
2066 11146 9.301153 GAGCTGTTTCATCTTTGTTTTAAAGAA 57.699 29.630 6.23 0.00 39.43 2.52
2067 11147 8.686334 AGAGCTGTTTCATCTTTGTTTTAAAGA 58.314 29.630 0.00 4.75 40.17 2.52
2068 11148 8.862550 AGAGCTGTTTCATCTTTGTTTTAAAG 57.137 30.769 0.00 0.00 0.00 1.85
2069 11149 8.686334 AGAGAGCTGTTTCATCTTTGTTTTAAA 58.314 29.630 0.00 0.00 0.00 1.52
2070 11150 8.225603 AGAGAGCTGTTTCATCTTTGTTTTAA 57.774 30.769 0.00 0.00 0.00 1.52
2071 11151 7.807977 AGAGAGCTGTTTCATCTTTGTTTTA 57.192 32.000 0.00 0.00 0.00 1.52
2072 11152 6.705863 AGAGAGCTGTTTCATCTTTGTTTT 57.294 33.333 0.00 0.00 0.00 2.43
2073 11153 6.319658 TCAAGAGAGCTGTTTCATCTTTGTTT 59.680 34.615 0.00 0.00 0.00 2.83
2074 11154 5.824624 TCAAGAGAGCTGTTTCATCTTTGTT 59.175 36.000 0.00 0.00 0.00 2.83
2075 11155 5.371526 TCAAGAGAGCTGTTTCATCTTTGT 58.628 37.500 0.00 0.00 0.00 2.83
2076 11156 5.936686 TCAAGAGAGCTGTTTCATCTTTG 57.063 39.130 0.00 0.00 0.00 2.77
2077 11157 5.647225 GGATCAAGAGAGCTGTTTCATCTTT 59.353 40.000 0.00 0.00 0.00 2.52
2078 11158 5.184711 GGATCAAGAGAGCTGTTTCATCTT 58.815 41.667 0.00 0.00 0.00 2.40
2079 11159 4.224594 TGGATCAAGAGAGCTGTTTCATCT 59.775 41.667 0.00 0.00 0.00 2.90
2080 11160 4.511527 TGGATCAAGAGAGCTGTTTCATC 58.488 43.478 0.00 0.00 0.00 2.92
2081 11161 4.019501 ACTGGATCAAGAGAGCTGTTTCAT 60.020 41.667 3.42 0.00 0.00 2.57
2082 11162 3.326006 ACTGGATCAAGAGAGCTGTTTCA 59.674 43.478 3.42 0.00 0.00 2.69
2083 11163 3.936564 ACTGGATCAAGAGAGCTGTTTC 58.063 45.455 3.42 0.00 0.00 2.78
2084 11164 4.322567 GAACTGGATCAAGAGAGCTGTTT 58.677 43.478 3.42 0.00 31.26 2.83
2085 11165 3.307339 GGAACTGGATCAAGAGAGCTGTT 60.307 47.826 3.42 0.00 32.75 3.16
2086 11166 2.235898 GGAACTGGATCAAGAGAGCTGT 59.764 50.000 3.42 0.00 0.00 4.40
2087 11167 2.235650 TGGAACTGGATCAAGAGAGCTG 59.764 50.000 3.42 0.00 0.00 4.24
2088 11168 2.544721 TGGAACTGGATCAAGAGAGCT 58.455 47.619 3.42 0.00 0.00 4.09
2089 11169 3.557228 ATGGAACTGGATCAAGAGAGC 57.443 47.619 3.42 0.00 0.00 4.09
2090 11170 9.050601 GTTAATTATGGAACTGGATCAAGAGAG 57.949 37.037 3.42 0.00 0.00 3.20
2091 11171 8.772250 AGTTAATTATGGAACTGGATCAAGAGA 58.228 33.333 3.42 0.00 34.61 3.10
2092 11172 8.834465 CAGTTAATTATGGAACTGGATCAAGAG 58.166 37.037 3.42 0.00 45.76 2.85
2093 11173 8.737168 CAGTTAATTATGGAACTGGATCAAGA 57.263 34.615 3.42 0.00 45.76 3.02
2102 11182 9.739276 TTCACTCAATCAGTTAATTATGGAACT 57.261 29.630 0.00 0.00 36.31 3.01
2106 11186 9.956720 GGAATTCACTCAATCAGTTAATTATGG 57.043 33.333 7.93 0.00 38.51 2.74
2110 11190 9.865321 CATTGGAATTCACTCAATCAGTTAATT 57.135 29.630 7.93 0.00 40.29 1.40
2111 11191 9.246670 TCATTGGAATTCACTCAATCAGTTAAT 57.753 29.630 7.93 0.00 31.29 1.40
2112 11192 8.634335 TCATTGGAATTCACTCAATCAGTTAA 57.366 30.769 7.93 0.00 30.26 2.01
2113 11193 8.634335 TTCATTGGAATTCACTCAATCAGTTA 57.366 30.769 7.93 0.00 30.26 2.24
2114 11194 7.528996 TTCATTGGAATTCACTCAATCAGTT 57.471 32.000 7.93 0.00 30.26 3.16
2115 11195 7.528996 TTTCATTGGAATTCACTCAATCAGT 57.471 32.000 7.93 0.00 31.24 3.41
2116 11196 7.330208 GGTTTTCATTGGAATTCACTCAATCAG 59.670 37.037 7.93 0.00 31.93 2.90
2117 11197 7.015487 AGGTTTTCATTGGAATTCACTCAATCA 59.985 33.333 7.93 0.00 31.93 2.57
2118 11198 7.381323 AGGTTTTCATTGGAATTCACTCAATC 58.619 34.615 7.93 0.00 31.93 2.67
2119 11199 7.307131 AGGTTTTCATTGGAATTCACTCAAT 57.693 32.000 7.93 5.28 31.93 2.57
2120 11200 6.729690 AGGTTTTCATTGGAATTCACTCAA 57.270 33.333 7.93 2.98 31.93 3.02
2121 11201 7.451255 ACATAGGTTTTCATTGGAATTCACTCA 59.549 33.333 7.93 0.00 31.93 3.41
2122 11202 7.830739 ACATAGGTTTTCATTGGAATTCACTC 58.169 34.615 7.93 0.00 31.93 3.51
2123 11203 7.781324 ACATAGGTTTTCATTGGAATTCACT 57.219 32.000 7.93 0.00 31.93 3.41
2124 11204 8.831715 AAACATAGGTTTTCATTGGAATTCAC 57.168 30.769 7.93 0.00 44.63 3.18
2210 11290 9.623000 GGGAATTGCTATTCTAAAACTTAGGTA 57.377 33.333 18.26 0.00 40.07 3.08
2211 11291 8.113462 TGGGAATTGCTATTCTAAAACTTAGGT 58.887 33.333 18.26 0.00 40.07 3.08
2212 11292 8.519799 TGGGAATTGCTATTCTAAAACTTAGG 57.480 34.615 18.26 0.00 40.07 2.69
2215 11295 8.478066 GGAATGGGAATTGCTATTCTAAAACTT 58.522 33.333 26.98 0.00 40.07 2.66
2216 11296 7.619302 TGGAATGGGAATTGCTATTCTAAAACT 59.381 33.333 26.98 0.00 40.07 2.66
2217 11297 7.706607 GTGGAATGGGAATTGCTATTCTAAAAC 59.293 37.037 26.98 18.68 40.07 2.43
2218 11298 7.147742 GGTGGAATGGGAATTGCTATTCTAAAA 60.148 37.037 26.98 13.36 40.07 1.52
2219 11299 6.323739 GGTGGAATGGGAATTGCTATTCTAAA 59.676 38.462 26.98 15.23 40.07 1.85
2220 11300 5.833131 GGTGGAATGGGAATTGCTATTCTAA 59.167 40.000 26.98 17.12 40.07 2.10
2221 11301 5.385198 GGTGGAATGGGAATTGCTATTCTA 58.615 41.667 26.98 21.74 40.07 2.10
2222 11302 4.218312 GGTGGAATGGGAATTGCTATTCT 58.782 43.478 26.98 2.06 40.07 2.40
2223 11303 3.321968 GGGTGGAATGGGAATTGCTATTC 59.678 47.826 22.49 22.49 39.57 1.75
2224 11304 3.308401 GGGTGGAATGGGAATTGCTATT 58.692 45.455 8.28 8.28 0.00 1.73
2225 11305 2.247111 TGGGTGGAATGGGAATTGCTAT 59.753 45.455 0.00 0.00 0.00 2.97
2226 11306 1.643286 TGGGTGGAATGGGAATTGCTA 59.357 47.619 0.00 0.00 0.00 3.49
2227 11307 0.413037 TGGGTGGAATGGGAATTGCT 59.587 50.000 0.00 0.00 0.00 3.91
2228 11308 1.274712 TTGGGTGGAATGGGAATTGC 58.725 50.000 0.00 0.00 0.00 3.56
2229 11309 3.327464 AGTTTTGGGTGGAATGGGAATTG 59.673 43.478 0.00 0.00 0.00 2.32
2230 11310 3.597182 AGTTTTGGGTGGAATGGGAATT 58.403 40.909 0.00 0.00 0.00 2.17
2231 11311 3.274281 AGTTTTGGGTGGAATGGGAAT 57.726 42.857 0.00 0.00 0.00 3.01
2232 11312 2.785357 AGTTTTGGGTGGAATGGGAA 57.215 45.000 0.00 0.00 0.00 3.97
2233 11313 2.785357 AAGTTTTGGGTGGAATGGGA 57.215 45.000 0.00 0.00 0.00 4.37



Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.