Multiple sequence alignment - TraesCS2B01G448600

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G448600 chr2B 100.000 4612 0 0 1 4612 641186090 641190701 0.000000e+00 8517.0
1 TraesCS2B01G448600 chr2B 84.468 940 107 19 2362 3294 641171621 641172528 0.000000e+00 891.0
2 TraesCS2B01G448600 chr2B 87.656 721 73 11 3393 4106 641172525 641173236 0.000000e+00 824.0
3 TraesCS2B01G448600 chr2B 81.298 786 87 29 987 1726 641170066 641170837 2.390000e-162 582.0
4 TraesCS2B01G448600 chr2B 81.837 479 49 19 4154 4607 641173316 641173781 7.290000e-98 368.0
5 TraesCS2B01G448600 chr2D 94.260 2892 133 12 1540 4402 538590271 538593158 0.000000e+00 4390.0
6 TraesCS2B01G448600 chr2D 94.915 1652 65 7 2481 4120 538318597 538320241 0.000000e+00 2567.0
7 TraesCS2B01G448600 chr2D 92.024 1517 91 15 6 1507 538316109 538317610 0.000000e+00 2104.0
8 TraesCS2B01G448600 chr2D 94.915 1003 47 2 1546 2548 538317600 538318598 0.000000e+00 1567.0
9 TraesCS2B01G448600 chr2D 94.850 602 29 2 906 1507 538589688 538590287 0.000000e+00 939.0
10 TraesCS2B01G448600 chr2D 84.352 933 108 18 2369 3294 538310112 538311013 0.000000e+00 880.0
11 TraesCS2B01G448600 chr2D 87.240 721 76 11 3393 4106 538311010 538311721 0.000000e+00 808.0
12 TraesCS2B01G448600 chr2D 95.766 496 21 0 4112 4607 538320261 538320756 0.000000e+00 800.0
13 TraesCS2B01G448600 chr2D 87.959 490 45 5 987 1466 538308546 538309031 2.410000e-157 566.0
14 TraesCS2B01G448600 chr2D 82.427 478 47 18 4154 4607 538311801 538312265 2.600000e-102 383.0
15 TraesCS2B01G448600 chr2D 91.489 94 6 2 1634 1726 538309230 538309322 1.350000e-25 128.0
16 TraesCS2B01G448600 chr2A 94.398 2374 108 9 835 3188 680540921 680543289 0.000000e+00 3624.0
17 TraesCS2B01G448600 chr2A 93.916 1167 43 9 3259 4402 680543467 680544628 0.000000e+00 1736.0
18 TraesCS2B01G448600 chr2A 84.690 934 103 20 2369 3294 680516915 680517816 0.000000e+00 896.0
19 TraesCS2B01G448600 chr2A 87.240 721 76 12 3393 4106 680517813 680518524 0.000000e+00 808.0
20 TraesCS2B01G448600 chr2A 86.963 698 79 10 6 701 680540117 680540804 0.000000e+00 774.0
21 TraesCS2B01G448600 chr2A 87.755 441 43 3 987 1417 680515367 680515806 5.330000e-139 505.0
22 TraesCS2B01G448600 chr2A 82.051 507 54 18 4131 4612 680518586 680519080 9.300000e-107 398.0
23 TraesCS2B01G448600 chr7A 79.531 469 82 12 90 547 197291457 197291922 5.760000e-84 322.0
24 TraesCS2B01G448600 chr5B 80.585 376 54 13 154 517 14279007 14279375 5.880000e-69 272.0
25 TraesCS2B01G448600 chr7D 77.612 469 72 25 89 547 461647494 461647939 2.130000e-63 254.0
26 TraesCS2B01G448600 chr1B 79.430 316 55 7 89 400 193003002 193002693 1.010000e-51 215.0
27 TraesCS2B01G448600 chr1B 100.000 29 0 0 3935 3963 20038517 20038489 2.000000e-03 54.7
28 TraesCS2B01G448600 chr1A 78.387 310 53 11 100 400 145990160 145990464 6.090000e-44 189.0
29 TraesCS2B01G448600 chr3A 83.810 105 14 1 262 366 666227266 666227367 3.800000e-16 97.1
30 TraesCS2B01G448600 chr6A 100.000 28 0 0 3936 3963 592590535 592590508 8.000000e-03 52.8
31 TraesCS2B01G448600 chr3B 96.774 31 1 0 3933 3963 13104144 13104174 8.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G448600 chr2B 641186090 641190701 4611 False 8517.000000 8517 100.000000 1 4612 1 chr2B.!!$F1 4611
1 TraesCS2B01G448600 chr2B 641170066 641173781 3715 False 666.250000 891 83.814750 987 4607 4 chr2B.!!$F2 3620
2 TraesCS2B01G448600 chr2D 538589688 538593158 3470 False 2664.500000 4390 94.555000 906 4402 2 chr2D.!!$F2 3496
3 TraesCS2B01G448600 chr2D 538308546 538320756 12210 False 1089.222222 2567 90.120778 6 4607 9 chr2D.!!$F1 4601
4 TraesCS2B01G448600 chr2A 680540117 680544628 4511 False 2044.666667 3624 91.759000 6 4402 3 chr2A.!!$F2 4396
5 TraesCS2B01G448600 chr2A 680515367 680519080 3713 False 651.750000 896 85.434000 987 4612 4 chr2A.!!$F1 3625

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
112 7671 2.238521 ACATCGGAGCAAACCAACATT 58.761 42.857 0.0 0.0 0.00 2.71 F
1621 9261 1.216930 TCTGGATGACCCATCGACCTA 59.783 52.381 0.0 0.0 45.57 3.08 F
2828 10700 0.106819 ATGCAGGGCTTCAGCTTAGG 60.107 55.000 0.0 0.0 41.70 2.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1973 9692 0.247460 TGAGAAGTCCATCCTGCGTG 59.753 55.0 0.00 0.0 0.00 5.34 R
3371 11356 0.037326 TACCTTGTTGCTGCTCCTCG 60.037 55.0 0.00 0.0 0.00 4.63 R
4573 12653 0.393820 CTTTTTGCACCCATGGCAGT 59.606 50.0 6.09 0.0 43.05 4.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
112 7671 2.238521 ACATCGGAGCAAACCAACATT 58.761 42.857 0.00 0.00 0.00 2.71
210 7769 4.019771 ACCTTGACAACCCAAACACATTTT 60.020 37.500 0.00 0.00 0.00 1.82
516 8078 7.222611 CGGAAACTTTCATTTTCATGTCTGTTT 59.777 33.333 3.93 0.00 35.08 2.83
520 8082 5.437289 TTCATTTTCATGTCTGTTTCGCT 57.563 34.783 0.00 0.00 0.00 4.93
547 8109 4.965119 ACGAAGTTCTGCTTTTGTTTCT 57.035 36.364 0.56 0.00 37.78 2.52
678 8240 6.322969 TCCTACCTGATGCTCGTATTTTTCTA 59.677 38.462 0.00 0.00 0.00 2.10
723 8294 8.638873 TGTGGACGAGATATTCATGTTAACTAT 58.361 33.333 7.22 0.00 0.00 2.12
774 8355 5.879777 TCTTAAAATGATGTGCCGATTGAGA 59.120 36.000 0.00 0.00 0.00 3.27
784 8365 2.629617 TGCCGATTGAGATGCTCATAGA 59.370 45.455 0.00 0.00 40.39 1.98
785 8366 3.070015 TGCCGATTGAGATGCTCATAGAA 59.930 43.478 0.00 0.00 40.39 2.10
820 8401 7.072030 GCATGTTTGCGTTTATAGAGATTAGG 58.928 38.462 0.00 0.00 39.49 2.69
828 8409 7.014905 TGCGTTTATAGAGATTAGGGTATGTGT 59.985 37.037 0.00 0.00 0.00 3.72
839 8420 4.913335 AGGGTATGTGTGTACGTATGAG 57.087 45.455 0.00 0.00 31.37 2.90
876 8457 9.612066 AGAAAAAGATTTATTGGAAACTTTGCA 57.388 25.926 0.00 0.00 0.00 4.08
926 8507 4.202101 CCAATGCCTAAACAAGTGTGTGAA 60.202 41.667 0.00 0.00 38.27 3.18
928 8509 5.789643 ATGCCTAAACAAGTGTGTGAAAT 57.210 34.783 0.00 0.00 38.27 2.17
935 8516 5.384063 AACAAGTGTGTGAAATTGTGACA 57.616 34.783 0.00 0.00 38.27 3.58
1315 8908 1.300963 GAGCTGGCCATTGACTCCA 59.699 57.895 5.51 0.00 0.00 3.86
1398 8991 1.586154 CTGTCCCACCGATTGTTGCC 61.586 60.000 0.00 0.00 0.00 4.52
1519 9135 7.935755 CCATCTTCATCTCACACTGGTTTATAT 59.064 37.037 0.00 0.00 0.00 0.86
1521 9137 8.722480 TCTTCATCTCACACTGGTTTATATTG 57.278 34.615 0.00 0.00 0.00 1.90
1535 9161 7.822658 TGGTTTATATTGGTGTAGAACAAAGC 58.177 34.615 0.00 0.00 0.00 3.51
1621 9261 1.216930 TCTGGATGACCCATCGACCTA 59.783 52.381 0.00 0.00 45.57 3.08
1713 9360 2.345991 GTGCAGGGCTACCACGAA 59.654 61.111 0.00 0.00 40.13 3.85
1751 9464 7.246171 ACAACAGGGGTATACTGATCATATC 57.754 40.000 2.25 0.00 39.24 1.63
2012 9731 6.607970 TCTCAGCCATGAAATTTATGGAGAT 58.392 36.000 19.35 2.93 46.42 2.75
2053 9772 1.135915 AGATGAGGCTACTGCAACTCG 59.864 52.381 0.00 0.00 41.91 4.18
2057 9776 1.473278 GAGGCTACTGCAACTCGTAGT 59.527 52.381 11.27 0.00 43.69 2.73
2147 9866 1.202615 GCTCAGATCATACAGCAGGCA 60.203 52.381 0.00 0.00 0.00 4.75
2239 9964 2.054021 TCATCCACCTGTCAACCAAGA 58.946 47.619 0.00 0.00 0.00 3.02
2341 10066 4.546570 GTTGAACCCAACTCTGTTAATGC 58.453 43.478 0.00 0.00 46.84 3.56
2379 10179 2.890311 TCGACCACAAATCAGGCAATTT 59.110 40.909 0.00 0.00 0.00 1.82
2391 10191 0.179113 GGCAATTTGTGGGCATACCG 60.179 55.000 0.00 0.00 44.64 4.02
2515 10378 4.513318 GGCTATTGGCAAGAAGAGACATAC 59.487 45.833 14.60 0.00 44.01 2.39
2536 10402 3.297134 AGAACCACTGAACCACATTGT 57.703 42.857 0.00 0.00 0.00 2.71
2572 10438 3.150767 GACAGACCTCTGATAGCCGTAT 58.849 50.000 9.35 0.00 46.59 3.06
2582 10448 4.588951 TCTGATAGCCGTATTCATGGAACT 59.411 41.667 0.00 0.00 31.77 3.01
2736 10602 3.587061 TGAAACCCAGAAGGAGCAGATTA 59.413 43.478 0.00 0.00 39.89 1.75
2743 10609 6.069381 ACCCAGAAGGAGCAGATTAAAGTTAT 60.069 38.462 0.00 0.00 39.89 1.89
2828 10700 0.106819 ATGCAGGGCTTCAGCTTAGG 60.107 55.000 0.00 0.00 41.70 2.69
2899 10771 2.234908 CTCTAGAAAGTGACCCTGGTGG 59.765 54.545 0.00 0.00 41.37 4.61
2982 10854 2.124778 GGGAGCCTCTTCAGCAGC 60.125 66.667 0.00 0.00 0.00 5.25
3201 11079 8.553459 ACTAGATGACCTTGATTTAACAACAG 57.447 34.615 0.00 0.00 0.00 3.16
3229 11107 7.345653 TCCTTCAAATACTGATATGTCTGACCT 59.654 37.037 5.17 0.00 32.78 3.85
3327 11312 5.084818 TGTGTTTCATGACCGTCTGATAT 57.915 39.130 0.00 0.00 0.00 1.63
3371 11356 3.997021 CCCTGCACGATATAACTGATTCC 59.003 47.826 0.00 0.00 0.00 3.01
3542 11527 1.989966 TAGGCGCACTAGCACGAGAC 61.990 60.000 10.83 0.00 42.27 3.36
3562 11547 2.238646 ACGGAATATTGGCACCTCTCAA 59.761 45.455 0.00 0.00 0.00 3.02
3662 11648 2.378547 TGGTCTTTTCCCTGCCTGTAAT 59.621 45.455 0.00 0.00 0.00 1.89
3740 11726 1.080705 GTTGTCGGTCCTGAGGTCG 60.081 63.158 0.00 4.49 0.00 4.79
3746 11732 0.669077 CGGTCCTGAGGTCGATAAGG 59.331 60.000 10.42 0.00 0.00 2.69
3812 11798 9.761504 CACTATGATTCTCATACAACTGAAGAT 57.238 33.333 0.00 0.00 38.26 2.40
3830 11816 0.391661 ATGAACGCCTTGCTGATCGT 60.392 50.000 0.00 0.00 36.67 3.73
3851 11837 3.923461 GTGATCCTCGTGTCTCAAAAGAG 59.077 47.826 0.00 0.00 30.24 2.85
3859 11845 2.294233 GTGTCTCAAAAGAGCAATGGCA 59.706 45.455 0.00 0.00 44.61 4.92
4066 12057 5.357878 TGCCCTTAATCAATGTCATCAGAAC 59.642 40.000 0.00 0.00 0.00 3.01
4252 12307 5.845953 CGATATATGCTTTTAAACACAGGCG 59.154 40.000 0.00 0.00 0.00 5.52
4477 12557 3.118531 AGTATTTGCCCTGATCTCCTGT 58.881 45.455 0.00 0.00 0.00 4.00
4573 12653 1.141657 GGCCAGGAGATGACTATGCAA 59.858 52.381 0.00 0.00 0.00 4.08
4599 12679 1.836604 GGGTGCAAAAAGGAGGGCA 60.837 57.895 0.00 0.00 0.00 5.36
4601 12681 0.467804 GGTGCAAAAAGGAGGGCAAA 59.532 50.000 0.00 0.00 38.10 3.68
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 0.320374 TCCGCTCCGTTTTCATCTGT 59.680 50.000 0.00 0.00 0.00 3.41
3 4 1.438651 TTCCGCTCCGTTTTCATCTG 58.561 50.000 0.00 0.00 0.00 2.90
4 5 2.178912 TTTCCGCTCCGTTTTCATCT 57.821 45.000 0.00 0.00 0.00 2.90
96 7655 6.538189 AATTAAAAATGTTGGTTTGCTCCG 57.462 33.333 0.00 0.00 0.00 4.63
313 7873 0.253327 GGTCGAGCCTGAAATTCCCT 59.747 55.000 2.39 0.00 0.00 4.20
516 8078 1.864711 CAGAACTTCGTTTTCCAGCGA 59.135 47.619 0.00 0.00 35.17 4.93
520 8082 4.082463 ACAAAAGCAGAACTTCGTTTTCCA 60.082 37.500 0.00 0.00 37.75 3.53
593 8155 6.699895 AAAACGGAAACAAAGAGACAAAAC 57.300 33.333 0.00 0.00 0.00 2.43
639 8201 7.684428 GCATCAGGTAGGAAAAACAGAGTTTTT 60.684 37.037 17.51 17.51 34.64 1.94
640 8202 6.239036 GCATCAGGTAGGAAAAACAGAGTTTT 60.239 38.462 2.26 2.26 33.40 2.43
641 8203 5.241728 GCATCAGGTAGGAAAAACAGAGTTT 59.758 40.000 0.00 0.00 0.00 2.66
644 8206 4.583871 AGCATCAGGTAGGAAAAACAGAG 58.416 43.478 0.00 0.00 0.00 3.35
678 8240 6.038271 GTCCACACGAAGGCTGAAATATATTT 59.962 38.462 10.51 10.51 0.00 1.40
718 8289 6.665680 AGGTCACTACAGACATCTTCATAGTT 59.334 38.462 0.00 0.00 40.29 2.24
723 8294 4.588951 ACAAGGTCACTACAGACATCTTCA 59.411 41.667 0.00 0.00 40.29 3.02
736 8307 8.517878 CATCATTTTAAGATTGACAAGGTCACT 58.482 33.333 0.00 0.00 42.60 3.41
774 8355 5.430886 TGCACACACTATTTCTATGAGCAT 58.569 37.500 0.00 0.00 0.00 3.79
784 8365 3.243367 ACGCAAACATGCACACACTATTT 60.243 39.130 0.00 0.00 34.41 1.40
785 8366 2.293122 ACGCAAACATGCACACACTATT 59.707 40.909 0.00 0.00 34.41 1.73
804 8385 8.358148 ACACACATACCCTAATCTCTATAAACG 58.642 37.037 0.00 0.00 0.00 3.60
813 8394 6.774170 TCATACGTACACACATACCCTAATCT 59.226 38.462 0.00 0.00 0.00 2.40
816 8397 5.221106 GCTCATACGTACACACATACCCTAA 60.221 44.000 0.00 0.00 0.00 2.69
817 8398 4.276678 GCTCATACGTACACACATACCCTA 59.723 45.833 0.00 0.00 0.00 3.53
819 8400 3.067742 AGCTCATACGTACACACATACCC 59.932 47.826 0.00 0.00 0.00 3.69
820 8401 4.288531 GAGCTCATACGTACACACATACC 58.711 47.826 9.40 0.00 0.00 2.73
828 8409 3.564235 AAACACGAGCTCATACGTACA 57.436 42.857 15.40 0.00 40.76 2.90
832 8413 5.756950 TTTCTAAAACACGAGCTCATACG 57.243 39.130 15.40 2.30 0.00 3.06
874 8455 2.781681 TGGCTACTAAAACCTCCTGC 57.218 50.000 0.00 0.00 0.00 4.85
876 8457 9.628500 CTAAAATATTGGCTACTAAAACCTCCT 57.372 33.333 0.00 0.00 0.00 3.69
926 8507 0.467844 TGGCTGGCACTGTCACAATT 60.468 50.000 0.00 0.00 36.87 2.32
928 8509 0.890542 GATGGCTGGCACTGTCACAA 60.891 55.000 5.88 0.00 46.24 3.33
967 8548 3.536956 AGGGCGTGATTTCTATTTCGA 57.463 42.857 0.00 0.00 0.00 3.71
1306 8899 2.434884 CAGGCGCGTGGAGTCAAT 60.435 61.111 21.95 0.00 0.00 2.57
1377 8970 1.156736 CAACAATCGGTGGGACAGAC 58.843 55.000 0.00 0.00 41.80 3.51
1398 8991 6.485984 ACAAGTATATATATACCTCCCGAGCG 59.514 42.308 23.49 5.59 39.42 5.03
1483 9078 9.553064 GTGTGAGATGAAGATGGTAATAGATTT 57.447 33.333 0.00 0.00 0.00 2.17
1519 9135 0.948678 GGCGCTTTGTTCTACACCAA 59.051 50.000 7.64 0.00 0.00 3.67
1521 9137 1.197036 GAAGGCGCTTTGTTCTACACC 59.803 52.381 10.44 0.00 0.00 4.16
1535 9161 1.208052 TGAAATGAGGAGGAGAAGGCG 59.792 52.381 0.00 0.00 0.00 5.52
1621 9261 6.016555 AGGTGTGCACTATTTAGGGAAAAAT 58.983 36.000 19.41 0.00 33.69 1.82
1713 9360 3.480470 CCTGTTGTTCATCAGGTTCTGT 58.520 45.455 17.11 0.00 44.19 3.41
1751 9464 7.811236 GCCATATGTATTTGTTCTCCATCAATG 59.189 37.037 1.24 0.00 0.00 2.82
1830 9543 3.449377 TCCTCATTGCCTACAATACGACA 59.551 43.478 0.00 0.00 44.83 4.35
1973 9692 0.247460 TGAGAAGTCCATCCTGCGTG 59.753 55.000 0.00 0.00 0.00 5.34
1975 9694 0.809241 GCTGAGAAGTCCATCCTGCG 60.809 60.000 0.00 0.00 0.00 5.18
2012 9731 4.881850 TCTATCAGTTCAGTATGTCTCGCA 59.118 41.667 0.00 0.00 37.40 5.10
2053 9772 3.243134 GCATCCGACTCTCTGGTTACTAC 60.243 52.174 0.00 0.00 0.00 2.73
2057 9776 2.025155 GAGCATCCGACTCTCTGGTTA 58.975 52.381 0.00 0.00 0.00 2.85
2101 9820 1.457643 TCCGTATGCCTCTCCCCTG 60.458 63.158 0.00 0.00 0.00 4.45
2147 9866 3.953612 TCTCATGAAAAGGCTGTTTGTGT 59.046 39.130 0.00 0.00 0.00 3.72
2188 9913 6.226787 CCATCAAGATCCAGACAGTATAACC 58.773 44.000 0.00 0.00 0.00 2.85
2239 9964 2.341846 TGCCTCTTCTCCGTGTTTTT 57.658 45.000 0.00 0.00 0.00 1.94
2341 10066 3.186119 GTCGATGCCTTTCTCTTCTCTG 58.814 50.000 0.00 0.00 0.00 3.35
2379 10179 1.829456 CAGGATCGGTATGCCCACA 59.171 57.895 0.00 0.00 0.00 4.17
2383 10183 0.179045 AGTTGCAGGATCGGTATGCC 60.179 55.000 3.12 0.00 39.22 4.40
2391 10191 4.994217 GGCTTCTCTATTAGTTGCAGGATC 59.006 45.833 0.00 0.00 0.00 3.36
2493 10293 5.118990 TGTATGTCTCTTCTTGCCAATAGC 58.881 41.667 0.00 0.00 44.14 2.97
2515 10378 2.951642 ACAATGTGGTTCAGTGGTTCTG 59.048 45.455 0.00 0.00 45.00 3.02
2534 10400 0.321671 GTCCTTCTGCCTGCTGTACA 59.678 55.000 0.00 0.00 0.00 2.90
2535 10401 0.321671 TGTCCTTCTGCCTGCTGTAC 59.678 55.000 0.00 0.00 0.00 2.90
2536 10402 0.610174 CTGTCCTTCTGCCTGCTGTA 59.390 55.000 0.00 0.00 0.00 2.74
2582 10448 1.000717 TGACGCTCAAAGTCGACATGA 60.001 47.619 19.50 19.25 41.24 3.07
2899 10771 1.893062 GGACCAAAATCCTGCAGCC 59.107 57.895 8.66 0.00 35.68 4.85
2982 10854 1.089920 CAATCTGGAAAGGCAGGACG 58.910 55.000 0.00 0.00 0.00 4.79
2992 10864 4.422073 ACTGACACTTCACAATCTGGAA 57.578 40.909 0.00 0.00 0.00 3.53
3201 11079 7.170658 GTCAGACATATCAGTATTTGAAGGAGC 59.829 40.741 0.00 0.00 39.77 4.70
3229 11107 1.643868 ATTCCGCGCGAAATGCTCAA 61.644 50.000 34.63 10.33 43.27 3.02
3272 11257 2.759795 GCAAGGGCCCTTCTGACT 59.240 61.111 35.15 10.39 33.42 3.41
3327 11312 4.658901 GGATACCTTATTGGAACCCTCAGA 59.341 45.833 0.00 0.00 39.71 3.27
3371 11356 0.037326 TACCTTGTTGCTGCTCCTCG 60.037 55.000 0.00 0.00 0.00 4.63
3542 11527 2.620251 TGAGAGGTGCCAATATTCCG 57.380 50.000 0.00 0.00 0.00 4.30
3610 11595 6.153340 AGCAATGAATACCTTAACAATGTGCT 59.847 34.615 0.00 0.00 0.00 4.40
3740 11726 1.339727 ACCCGCCACTTGTTCCTTATC 60.340 52.381 0.00 0.00 0.00 1.75
3746 11732 1.104577 TCCAAACCCGCCACTTGTTC 61.105 55.000 0.00 0.00 0.00 3.18
3812 11798 1.005037 ACGATCAGCAAGGCGTTCA 60.005 52.632 0.00 0.00 32.42 3.18
3851 11837 1.787012 CAACAAGGACTTGCCATTGC 58.213 50.000 11.73 0.00 44.03 3.56
3859 11845 6.096846 GGTATTCCAATATGCAACAAGGACTT 59.903 38.462 0.00 0.00 0.00 3.01
4066 12057 7.271511 AGCACAAGAGGAGTTAATTATCTCTG 58.728 38.462 18.58 13.07 35.30 3.35
4228 12283 5.845953 CGCCTGTGTTTAAAAGCATATATCG 59.154 40.000 0.00 0.00 0.00 2.92
4252 12307 3.269178 AGCTTTAGATGCAGCACTTCTC 58.731 45.455 4.07 0.00 38.61 2.87
4477 12557 4.248859 GCATGTCAGTTCTTGAGCTCTTA 58.751 43.478 16.19 1.96 36.21 2.10
4573 12653 0.393820 CTTTTTGCACCCATGGCAGT 59.606 50.000 6.09 0.00 43.05 4.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.