Multiple sequence alignment - TraesCS2B01G448400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)



BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G448400 chr2B 100.000 6944 0 0 1 6944 641096167 641103110 0.000000e+00 12824.0
1 TraesCS2B01G448400 chr2B 100.000 194 0 0 7153 7346 641103319 641103512 7.010000e-95 359.0
2 TraesCS2B01G448400 chr2A 95.739 3004 94 15 813 3801 680507002 680509986 0.000000e+00 4807.0
3 TraesCS2B01G448400 chr2A 96.033 2823 79 10 3794 6601 680510171 680512975 0.000000e+00 4562.0
4 TraesCS2B01G448400 chr2A 92.718 206 15 0 6736 6941 680513534 680513739 1.550000e-76 298.0
5 TraesCS2B01G448400 chr2A 90.104 192 13 3 7161 7346 680514128 680514319 2.050000e-60 244.0
6 TraesCS2B01G448400 chr2A 91.241 137 12 0 6599 6735 680513134 680513270 3.500000e-43 187.0
7 TraesCS2B01G448400 chr2D 94.934 3020 88 16 3907 6911 538279260 538282229 0.000000e+00 4669.0
8 TraesCS2B01G448400 chr2D 95.439 2083 62 5 1827 3908 538277123 538279173 0.000000e+00 3290.0
9 TraesCS2B01G448400 chr2D 95.155 1032 36 7 808 1828 538276015 538277043 0.000000e+00 1616.0
10 TraesCS2B01G448400 chr2D 93.322 599 35 5 4203 4797 107944513 107945110 0.000000e+00 880.0
11 TraesCS2B01G448400 chr2D 93.519 216 13 1 5174 5389 107945131 107945345 3.310000e-83 320.0
12 TraesCS2B01G448400 chr2D 88.750 160 17 1 48 206 94457663 94457822 2.090000e-45 195.0
13 TraesCS2B01G448400 chr2D 100.000 32 0 0 245 276 538275998 538276029 7.960000e-05 60.2
14 TraesCS2B01G448400 chrUn 94.176 601 28 5 4203 4797 21182466 21183065 0.000000e+00 909.0
15 TraesCS2B01G448400 chrUn 96.468 538 17 2 276 812 83928945 83928409 0.000000e+00 887.0
16 TraesCS2B01G448400 chrUn 96.296 216 7 1 5174 5389 21183086 21183300 3.260000e-93 353.0
17 TraesCS2B01G448400 chrUn 87.701 187 22 1 21 206 73632342 73632528 4.460000e-52 217.0
18 TraesCS2B01G448400 chr6D 96.636 535 16 2 276 809 464465468 464466001 0.000000e+00 887.0
19 TraesCS2B01G448400 chr6D 95.693 534 21 2 276 808 14615634 14616166 0.000000e+00 857.0
20 TraesCS2B01G448400 chr6D 89.375 160 16 1 48 206 9462617 9462776 4.490000e-47 200.0
21 TraesCS2B01G448400 chr6D 88.272 162 18 1 48 208 267236417 267236578 7.520000e-45 193.0
22 TraesCS2B01G448400 chr6D 81.714 175 29 3 34 206 14256382 14256209 7.680000e-30 143.0
23 TraesCS2B01G448400 chr5B 96.276 537 18 2 276 811 680927342 680927877 0.000000e+00 880.0
24 TraesCS2B01G448400 chr5B 85.625 160 22 1 48 206 134910607 134910766 4.560000e-37 167.0
25 TraesCS2B01G448400 chr3A 96.449 535 16 3 276 809 716637302 716636770 0.000000e+00 880.0
26 TraesCS2B01G448400 chr3D 95.888 535 19 3 276 809 5040413 5039881 0.000000e+00 863.0
27 TraesCS2B01G448400 chr3D 93.895 344 20 1 4203 4545 319530067 319529724 1.090000e-142 518.0
28 TraesCS2B01G448400 chr3D 94.388 196 8 2 5194 5389 319529725 319529533 1.550000e-76 298.0
29 TraesCS2B01G448400 chr7B 95.547 539 20 4 276 811 138474945 138475482 0.000000e+00 859.0
30 TraesCS2B01G448400 chr3B 95.709 536 20 2 275 808 59705223 59704689 0.000000e+00 859.0
31 TraesCS2B01G448400 chr3B 95.693 534 21 2 276 808 2501269 2501801 0.000000e+00 857.0
32 TraesCS2B01G448400 chr3B 83.750 160 25 1 48 206 312195898 312196057 4.590000e-32 150.0
33 TraesCS2B01G448400 chr7A 92.333 600 40 5 4203 4797 115569664 115569066 0.000000e+00 848.0
34 TraesCS2B01G448400 chr7A 94.286 210 12 0 5174 5383 115569045 115568836 9.190000e-84 322.0
35 TraesCS2B01G448400 chr7D 89.375 160 16 1 48 206 454325040 454324881 4.490000e-47 200.0
36 TraesCS2B01G448400 chr7D 88.125 160 18 1 48 206 6883026 6883185 9.730000e-44 189.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G448400 chr2B 641096167 641103512 7345 False 6591.5 12824 100.0000 1 7346 2 chr2B.!!$F1 7345
1 TraesCS2B01G448400 chr2A 680507002 680514319 7317 False 2019.6 4807 93.1670 813 7346 5 chr2A.!!$F1 6533
2 TraesCS2B01G448400 chr2D 538275998 538282229 6231 False 2408.8 4669 96.3820 245 6911 4 chr2D.!!$F3 6666
3 TraesCS2B01G448400 chr2D 107944513 107945345 832 False 600.0 880 93.4205 4203 5389 2 chr2D.!!$F2 1186
4 TraesCS2B01G448400 chrUn 83928409 83928945 536 True 887.0 887 96.4680 276 812 1 chrUn.!!$R1 536
5 TraesCS2B01G448400 chrUn 21182466 21183300 834 False 631.0 909 95.2360 4203 5389 2 chrUn.!!$F2 1186
6 TraesCS2B01G448400 chr6D 464465468 464466001 533 False 887.0 887 96.6360 276 809 1 chr6D.!!$F4 533
7 TraesCS2B01G448400 chr6D 14615634 14616166 532 False 857.0 857 95.6930 276 808 1 chr6D.!!$F2 532
8 TraesCS2B01G448400 chr5B 680927342 680927877 535 False 880.0 880 96.2760 276 811 1 chr5B.!!$F2 535
9 TraesCS2B01G448400 chr3A 716636770 716637302 532 True 880.0 880 96.4490 276 809 1 chr3A.!!$R1 533
10 TraesCS2B01G448400 chr3D 5039881 5040413 532 True 863.0 863 95.8880 276 809 1 chr3D.!!$R1 533
11 TraesCS2B01G448400 chr3D 319529533 319530067 534 True 408.0 518 94.1415 4203 5389 2 chr3D.!!$R2 1186
12 TraesCS2B01G448400 chr7B 138474945 138475482 537 False 859.0 859 95.5470 276 811 1 chr7B.!!$F1 535
13 TraesCS2B01G448400 chr3B 59704689 59705223 534 True 859.0 859 95.7090 275 808 1 chr3B.!!$R1 533
14 TraesCS2B01G448400 chr3B 2501269 2501801 532 False 857.0 857 95.6930 276 808 1 chr3B.!!$F1 532
15 TraesCS2B01G448400 chr7A 115568836 115569664 828 True 585.0 848 93.3095 4203 5383 2 chr7A.!!$R1 1180


AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
230 231 0.037605 ACAAATCCGGACGTGTCTCC 60.038 55.000 6.12 0.00 0.00 3.71 F
697 701 0.103208 CCTTCGGCTCGCTTCAGTAT 59.897 55.000 0.00 0.00 0.00 2.12 F
1338 1357 1.112113 GGCATTACCTCCTCTCGTCA 58.888 55.000 0.00 0.00 34.51 4.35 F
2535 2647 1.269448 GGCGCAAGTTCAATCTTCCAA 59.731 47.619 10.83 0.00 41.68 3.53 F
3033 3145 0.694771 ACAGCTGCTTCCAATCCAGA 59.305 50.000 15.27 0.00 0.00 3.86 F
3340 3452 1.074471 GCCTAGTCCATCCCCTCCA 60.074 63.158 0.00 0.00 0.00 3.86 F
4595 4998 1.136891 TGGACTGGTCATGCATAGACG 59.863 52.381 17.40 10.64 36.87 4.18 F
5408 5817 2.170012 AGGCGAAGGTATTACTGGGA 57.830 50.000 0.00 0.00 0.00 4.37 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1672 1699 1.067071 ACTAGCCGGTAAGCTCAACAC 60.067 52.381 1.90 0.0 43.67 3.32 R
2439 2551 0.251922 AGGGCCAACTGAATGCATGT 60.252 50.000 6.18 0.0 0.00 3.21 R
2979 3091 0.689080 TTGCTTGGGGGTTCTGCAAA 60.689 50.000 0.00 0.0 40.10 3.68 R
4516 4917 0.034670 GAGCCTGGCTGGAGTTGAAT 60.035 55.000 28.82 0.0 39.88 2.57 R
4822 5229 5.754778 ACGAACAACCAAAATAACTGTAGC 58.245 37.500 0.00 0.0 0.00 3.58 R
5305 5714 1.302511 GCAAGGCGTTCCTCTTCCA 60.303 57.895 0.00 0.0 43.40 3.53 R
5419 5830 0.109153 ATCAAGCTCAGCCACACACA 59.891 50.000 0.00 0.0 0.00 3.72 R
6924 7796 0.523072 ATGACCGCTTGCATGTCAAC 59.477 50.000 15.46 0.0 41.85 3.18 R


All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.290622 CAACTGGCAGGTGGGGCT 62.291 66.667 24.89 0.00 0.00 5.19
18 19 4.290622 AACTGGCAGGTGGGGCTG 62.291 66.667 20.34 0.00 38.09 4.85
20 21 4.421515 CTGGCAGGTGGGGCTGAG 62.422 72.222 6.61 0.00 34.81 3.35
21 22 4.980592 TGGCAGGTGGGGCTGAGA 62.981 66.667 0.00 0.00 0.00 3.27
22 23 4.106925 GGCAGGTGGGGCTGAGAG 62.107 72.222 0.00 0.00 0.00 3.20
23 24 4.106925 GCAGGTGGGGCTGAGAGG 62.107 72.222 0.00 0.00 0.00 3.69
24 25 3.406200 CAGGTGGGGCTGAGAGGG 61.406 72.222 0.00 0.00 0.00 4.30
25 26 3.615811 AGGTGGGGCTGAGAGGGA 61.616 66.667 0.00 0.00 0.00 4.20
26 27 2.610859 GGTGGGGCTGAGAGGGAA 60.611 66.667 0.00 0.00 0.00 3.97
27 28 2.231380 GGTGGGGCTGAGAGGGAAA 61.231 63.158 0.00 0.00 0.00 3.13
28 29 1.002011 GTGGGGCTGAGAGGGAAAC 60.002 63.158 0.00 0.00 0.00 2.78
29 30 1.151810 TGGGGCTGAGAGGGAAACT 60.152 57.895 0.00 0.00 0.00 2.66
30 31 0.118346 TGGGGCTGAGAGGGAAACTA 59.882 55.000 0.00 0.00 0.00 2.24
31 32 1.286248 GGGGCTGAGAGGGAAACTAA 58.714 55.000 0.00 0.00 0.00 2.24
32 33 1.210722 GGGGCTGAGAGGGAAACTAAG 59.789 57.143 0.00 0.00 0.00 2.18
33 34 1.407575 GGGCTGAGAGGGAAACTAAGC 60.408 57.143 0.00 0.00 32.34 3.09
34 35 1.557371 GGCTGAGAGGGAAACTAAGCT 59.443 52.381 0.00 0.00 33.19 3.74
35 36 2.626840 GCTGAGAGGGAAACTAAGCTG 58.373 52.381 0.00 0.00 31.14 4.24
36 37 2.234908 GCTGAGAGGGAAACTAAGCTGA 59.765 50.000 0.00 0.00 31.14 4.26
37 38 3.855858 CTGAGAGGGAAACTAAGCTGAC 58.144 50.000 0.00 0.00 0.00 3.51
38 39 3.239449 TGAGAGGGAAACTAAGCTGACA 58.761 45.455 0.00 0.00 0.00 3.58
39 40 3.646162 TGAGAGGGAAACTAAGCTGACAA 59.354 43.478 0.00 0.00 0.00 3.18
40 41 4.249661 GAGAGGGAAACTAAGCTGACAAG 58.750 47.826 0.00 0.00 0.00 3.16
41 42 3.008485 AGAGGGAAACTAAGCTGACAAGG 59.992 47.826 0.00 0.00 0.00 3.61
42 43 2.711547 AGGGAAACTAAGCTGACAAGGT 59.288 45.455 0.00 0.00 34.99 3.50
43 44 2.814336 GGGAAACTAAGCTGACAAGGTG 59.186 50.000 0.00 0.00 33.40 4.00
44 45 3.477530 GGAAACTAAGCTGACAAGGTGT 58.522 45.455 0.00 0.00 33.40 4.16
54 55 2.969443 GACAAGGTGTCATTTGACCG 57.031 50.000 8.16 0.00 46.22 4.79
55 56 1.535462 GACAAGGTGTCATTTGACCGG 59.465 52.381 0.00 0.00 46.22 5.28
56 57 1.133915 ACAAGGTGTCATTTGACCGGT 60.134 47.619 6.92 6.92 44.15 5.28
57 58 1.535462 CAAGGTGTCATTTGACCGGTC 59.465 52.381 28.17 28.17 44.15 4.79
58 59 0.762418 AGGTGTCATTTGACCGGTCA 59.238 50.000 33.23 33.23 44.15 4.02
59 60 1.142060 AGGTGTCATTTGACCGGTCAA 59.858 47.619 39.59 39.59 46.72 3.18
89 90 7.478520 AAAATACGAAGCTATATGGTGTGAC 57.521 36.000 0.00 0.00 0.00 3.67
90 91 5.784578 ATACGAAGCTATATGGTGTGACA 57.215 39.130 0.00 0.00 0.00 3.58
91 92 4.046938 ACGAAGCTATATGGTGTGACAG 57.953 45.455 0.00 0.00 0.00 3.51
92 93 3.447586 ACGAAGCTATATGGTGTGACAGT 59.552 43.478 0.00 0.00 0.00 3.55
93 94 3.798878 CGAAGCTATATGGTGTGACAGTG 59.201 47.826 0.00 0.00 0.00 3.66
94 95 4.440112 CGAAGCTATATGGTGTGACAGTGA 60.440 45.833 0.00 0.00 0.00 3.41
95 96 4.392921 AGCTATATGGTGTGACAGTGAC 57.607 45.455 0.00 0.00 0.00 3.67
96 97 3.133003 AGCTATATGGTGTGACAGTGACC 59.867 47.826 0.00 0.00 0.00 4.02
97 98 2.672961 ATATGGTGTGACAGTGACCG 57.327 50.000 0.00 0.00 31.87 4.79
98 99 1.334160 TATGGTGTGACAGTGACCGT 58.666 50.000 0.00 0.00 33.46 4.83
99 100 1.334160 ATGGTGTGACAGTGACCGTA 58.666 50.000 0.00 0.00 31.87 4.02
100 101 1.334160 TGGTGTGACAGTGACCGTAT 58.666 50.000 0.00 0.00 31.87 3.06
101 102 2.516906 TGGTGTGACAGTGACCGTATA 58.483 47.619 0.00 0.00 31.87 1.47
102 103 2.892215 TGGTGTGACAGTGACCGTATAA 59.108 45.455 0.00 0.00 31.87 0.98
103 104 3.512329 TGGTGTGACAGTGACCGTATAAT 59.488 43.478 0.00 0.00 31.87 1.28
104 105 4.110482 GGTGTGACAGTGACCGTATAATC 58.890 47.826 0.00 0.00 0.00 1.75
105 106 4.381185 GGTGTGACAGTGACCGTATAATCA 60.381 45.833 0.00 0.00 0.00 2.57
106 107 4.561606 GTGTGACAGTGACCGTATAATCAC 59.438 45.833 0.00 0.00 44.64 3.06
107 108 4.110482 GTGACAGTGACCGTATAATCACC 58.890 47.826 0.00 0.00 45.28 4.02
108 109 3.764972 TGACAGTGACCGTATAATCACCA 59.235 43.478 0.00 0.47 45.28 4.17
109 110 4.404394 TGACAGTGACCGTATAATCACCAT 59.596 41.667 0.00 0.26 45.28 3.55
110 111 5.595133 TGACAGTGACCGTATAATCACCATA 59.405 40.000 0.00 0.00 45.28 2.74
111 112 6.097129 TGACAGTGACCGTATAATCACCATAA 59.903 38.462 0.00 0.00 45.28 1.90
112 113 6.278363 ACAGTGACCGTATAATCACCATAAC 58.722 40.000 0.00 0.00 45.28 1.89
113 114 6.127281 ACAGTGACCGTATAATCACCATAACA 60.127 38.462 0.00 0.00 45.28 2.41
114 115 6.200286 CAGTGACCGTATAATCACCATAACAC 59.800 42.308 8.65 0.00 45.28 3.32
115 116 5.174398 GTGACCGTATAATCACCATAACACG 59.826 44.000 0.00 0.00 39.49 4.49
116 117 5.163530 TGACCGTATAATCACCATAACACGT 60.164 40.000 0.00 0.00 0.00 4.49
117 118 6.039159 TGACCGTATAATCACCATAACACGTA 59.961 38.462 0.00 0.00 0.00 3.57
118 119 6.985117 ACCGTATAATCACCATAACACGTAT 58.015 36.000 0.00 0.00 0.00 3.06
119 120 8.109705 ACCGTATAATCACCATAACACGTATA 57.890 34.615 0.00 0.00 0.00 1.47
120 121 8.742777 ACCGTATAATCACCATAACACGTATAT 58.257 33.333 0.00 0.00 0.00 0.86
128 129 9.639601 ATCACCATAACACGTATATAATGACTG 57.360 33.333 0.00 0.00 0.00 3.51
129 130 8.635328 TCACCATAACACGTATATAATGACTGT 58.365 33.333 0.00 0.00 0.00 3.55
130 131 8.699749 CACCATAACACGTATATAATGACTGTG 58.300 37.037 0.00 0.00 0.00 3.66
131 132 8.418662 ACCATAACACGTATATAATGACTGTGT 58.581 33.333 0.00 0.00 40.48 3.72
132 133 9.256477 CCATAACACGTATATAATGACTGTGTT 57.744 33.333 11.83 11.83 46.89 3.32
136 137 8.638685 ACACGTATATAATGACTGTGTTAACC 57.361 34.615 2.48 0.00 35.74 2.85
137 138 7.433131 ACACGTATATAATGACTGTGTTAACCG 59.567 37.037 2.48 0.00 35.74 4.44
138 139 7.433131 CACGTATATAATGACTGTGTTAACCGT 59.567 37.037 2.48 0.00 0.00 4.83
139 140 8.620416 ACGTATATAATGACTGTGTTAACCGTA 58.380 33.333 2.48 0.00 0.00 4.02
140 141 9.616634 CGTATATAATGACTGTGTTAACCGTAT 57.383 33.333 2.48 0.00 0.00 3.06
146 147 8.836268 AATGACTGTGTTAACCGTATTCTTAA 57.164 30.769 2.48 0.00 0.00 1.85
147 148 7.878477 TGACTGTGTTAACCGTATTCTTAAG 57.122 36.000 2.48 0.00 0.00 1.85
148 149 7.436118 TGACTGTGTTAACCGTATTCTTAAGT 58.564 34.615 2.48 0.00 0.00 2.24
149 150 8.575589 TGACTGTGTTAACCGTATTCTTAAGTA 58.424 33.333 2.48 0.00 0.00 2.24
150 151 8.748380 ACTGTGTTAACCGTATTCTTAAGTAC 57.252 34.615 2.48 0.00 0.00 2.73
151 152 8.359642 ACTGTGTTAACCGTATTCTTAAGTACA 58.640 33.333 2.48 0.00 0.00 2.90
152 153 8.746922 TGTGTTAACCGTATTCTTAAGTACAG 57.253 34.615 2.48 0.00 0.00 2.74
153 154 8.359642 TGTGTTAACCGTATTCTTAAGTACAGT 58.640 33.333 2.48 0.00 0.00 3.55
154 155 8.642020 GTGTTAACCGTATTCTTAAGTACAGTG 58.358 37.037 2.48 0.00 0.00 3.66
155 156 8.575589 TGTTAACCGTATTCTTAAGTACAGTGA 58.424 33.333 2.48 0.00 0.00 3.41
156 157 8.854312 GTTAACCGTATTCTTAAGTACAGTGAC 58.146 37.037 1.63 0.00 0.00 3.67
157 158 5.958955 ACCGTATTCTTAAGTACAGTGACC 58.041 41.667 1.63 0.00 0.00 4.02
158 159 5.477984 ACCGTATTCTTAAGTACAGTGACCA 59.522 40.000 1.63 0.00 0.00 4.02
159 160 6.015180 ACCGTATTCTTAAGTACAGTGACCAA 60.015 38.462 1.63 0.00 0.00 3.67
160 161 6.869913 CCGTATTCTTAAGTACAGTGACCAAA 59.130 38.462 1.63 0.00 0.00 3.28
161 162 7.063074 CCGTATTCTTAAGTACAGTGACCAAAG 59.937 40.741 1.63 0.00 0.00 2.77
162 163 7.597743 CGTATTCTTAAGTACAGTGACCAAAGT 59.402 37.037 1.63 0.00 0.00 2.66
163 164 7.730364 ATTCTTAAGTACAGTGACCAAAGTG 57.270 36.000 1.63 0.00 0.00 3.16
164 165 6.474140 TCTTAAGTACAGTGACCAAAGTGA 57.526 37.500 1.63 0.00 0.00 3.41
165 166 6.880484 TCTTAAGTACAGTGACCAAAGTGAA 58.120 36.000 1.63 0.00 0.00 3.18
166 167 6.759827 TCTTAAGTACAGTGACCAAAGTGAAC 59.240 38.462 1.63 0.00 0.00 3.18
167 168 3.454375 AGTACAGTGACCAAAGTGAACG 58.546 45.455 0.00 0.00 0.00 3.95
168 169 2.396590 ACAGTGACCAAAGTGAACGT 57.603 45.000 0.00 0.00 0.00 3.99
169 170 3.530265 ACAGTGACCAAAGTGAACGTA 57.470 42.857 0.00 0.00 0.00 3.57
170 171 3.192466 ACAGTGACCAAAGTGAACGTAC 58.808 45.455 0.00 0.00 0.00 3.67
171 172 3.191669 CAGTGACCAAAGTGAACGTACA 58.808 45.455 0.00 0.00 0.00 2.90
172 173 3.807622 CAGTGACCAAAGTGAACGTACAT 59.192 43.478 0.00 0.00 0.00 2.29
173 174 3.807622 AGTGACCAAAGTGAACGTACATG 59.192 43.478 0.00 0.00 0.00 3.21
174 175 3.805422 GTGACCAAAGTGAACGTACATGA 59.195 43.478 0.00 0.00 0.00 3.07
175 176 3.805422 TGACCAAAGTGAACGTACATGAC 59.195 43.478 0.00 0.00 0.00 3.06
176 177 3.799366 ACCAAAGTGAACGTACATGACA 58.201 40.909 0.00 0.00 0.00 3.58
177 178 4.193090 ACCAAAGTGAACGTACATGACAA 58.807 39.130 0.00 0.00 0.00 3.18
178 179 4.272504 ACCAAAGTGAACGTACATGACAAG 59.727 41.667 0.00 0.00 0.00 3.16
179 180 4.272504 CCAAAGTGAACGTACATGACAAGT 59.727 41.667 0.00 0.00 0.00 3.16
180 181 5.220777 CCAAAGTGAACGTACATGACAAGTT 60.221 40.000 0.00 1.21 0.00 2.66
181 182 5.652744 AAGTGAACGTACATGACAAGTTC 57.347 39.130 17.15 17.15 40.90 3.01
182 183 4.689071 AGTGAACGTACATGACAAGTTCA 58.311 39.130 20.34 20.34 45.78 3.18
184 185 4.689071 TGAACGTACATGACAAGTTCAGT 58.311 39.130 20.34 0.00 43.95 3.41
185 186 4.506288 TGAACGTACATGACAAGTTCAGTG 59.494 41.667 20.34 0.00 43.95 3.66
186 187 4.316205 ACGTACATGACAAGTTCAGTGA 57.684 40.909 0.00 0.00 37.77 3.41
187 188 4.049186 ACGTACATGACAAGTTCAGTGAC 58.951 43.478 0.00 0.00 37.77 3.67
188 189 3.428870 CGTACATGACAAGTTCAGTGACC 59.571 47.826 0.00 0.00 37.77 4.02
189 190 3.558931 ACATGACAAGTTCAGTGACCA 57.441 42.857 0.00 0.00 37.77 4.02
190 191 4.090761 ACATGACAAGTTCAGTGACCAT 57.909 40.909 0.00 0.00 37.77 3.55
191 192 4.067896 ACATGACAAGTTCAGTGACCATC 58.932 43.478 0.00 0.00 37.77 3.51
192 193 3.836365 TGACAAGTTCAGTGACCATCA 57.164 42.857 0.00 0.00 0.00 3.07
193 194 4.149511 TGACAAGTTCAGTGACCATCAA 57.850 40.909 0.00 0.00 0.00 2.57
194 195 4.717877 TGACAAGTTCAGTGACCATCAAT 58.282 39.130 0.00 0.00 0.00 2.57
195 196 4.516321 TGACAAGTTCAGTGACCATCAATG 59.484 41.667 0.00 0.00 43.13 2.82
196 197 4.464008 ACAAGTTCAGTGACCATCAATGT 58.536 39.130 6.20 0.00 42.45 2.71
197 198 5.620206 ACAAGTTCAGTGACCATCAATGTA 58.380 37.500 6.20 0.00 42.45 2.29
198 199 6.240894 ACAAGTTCAGTGACCATCAATGTAT 58.759 36.000 6.20 0.00 42.45 2.29
199 200 6.716628 ACAAGTTCAGTGACCATCAATGTATT 59.283 34.615 6.20 0.00 42.45 1.89
200 201 7.231317 ACAAGTTCAGTGACCATCAATGTATTT 59.769 33.333 6.20 0.00 42.45 1.40
201 202 7.765695 AGTTCAGTGACCATCAATGTATTTT 57.234 32.000 6.20 0.00 42.45 1.82
202 203 8.862325 AGTTCAGTGACCATCAATGTATTTTA 57.138 30.769 6.20 0.00 42.45 1.52
203 204 8.730680 AGTTCAGTGACCATCAATGTATTTTAC 58.269 33.333 6.20 0.00 42.45 2.01
204 205 8.730680 GTTCAGTGACCATCAATGTATTTTACT 58.269 33.333 6.20 0.00 42.45 2.24
205 206 8.492673 TCAGTGACCATCAATGTATTTTACTC 57.507 34.615 6.20 0.00 42.45 2.59
206 207 8.100164 TCAGTGACCATCAATGTATTTTACTCA 58.900 33.333 6.20 0.00 42.45 3.41
207 208 8.729756 CAGTGACCATCAATGTATTTTACTCAA 58.270 33.333 0.00 0.00 37.65 3.02
208 209 9.295825 AGTGACCATCAATGTATTTTACTCAAA 57.704 29.630 0.00 0.00 0.00 2.69
209 210 9.906660 GTGACCATCAATGTATTTTACTCAAAA 57.093 29.630 0.00 0.00 38.00 2.44
220 221 8.669394 GTATTTTACTCAAAAGACAAATCCGG 57.331 34.615 0.00 0.00 42.66 5.14
221 222 6.945938 TTTTACTCAAAAGACAAATCCGGA 57.054 33.333 6.61 6.61 0.00 5.14
222 223 5.934935 TTACTCAAAAGACAAATCCGGAC 57.065 39.130 6.12 0.00 0.00 4.79
223 224 2.806244 ACTCAAAAGACAAATCCGGACG 59.194 45.455 6.12 0.00 0.00 4.79
224 225 2.806244 CTCAAAAGACAAATCCGGACGT 59.194 45.455 6.12 4.06 0.00 4.34
225 226 2.546368 TCAAAAGACAAATCCGGACGTG 59.454 45.455 6.12 10.87 0.00 4.49
226 227 2.249844 AAAGACAAATCCGGACGTGT 57.750 45.000 19.22 19.22 0.00 4.49
227 228 1.792006 AAGACAAATCCGGACGTGTC 58.208 50.000 29.56 29.56 40.56 3.67
228 229 0.966920 AGACAAATCCGGACGTGTCT 59.033 50.000 32.06 32.06 44.51 3.41
229 230 1.067776 AGACAAATCCGGACGTGTCTC 60.068 52.381 32.06 17.94 45.88 3.36
230 231 0.037605 ACAAATCCGGACGTGTCTCC 60.038 55.000 6.12 0.00 0.00 3.71
237 238 3.509388 GGACGTGTCTCCGAATGTT 57.491 52.632 0.00 0.00 0.00 2.71
238 239 1.068474 GGACGTGTCTCCGAATGTTG 58.932 55.000 0.00 0.00 0.00 3.33
239 240 1.068474 GACGTGTCTCCGAATGTTGG 58.932 55.000 0.00 0.00 0.00 3.77
240 241 0.391597 ACGTGTCTCCGAATGTTGGT 59.608 50.000 0.00 0.00 0.00 3.67
241 242 1.202604 ACGTGTCTCCGAATGTTGGTT 60.203 47.619 0.00 0.00 0.00 3.67
242 243 2.036217 ACGTGTCTCCGAATGTTGGTTA 59.964 45.455 0.00 0.00 0.00 2.85
243 244 2.666508 CGTGTCTCCGAATGTTGGTTAG 59.333 50.000 0.00 0.00 0.00 2.34
269 270 2.904664 TTCAGCACTGAAGACAGCG 58.095 52.632 8.99 0.00 46.95 5.18
270 271 0.104855 TTCAGCACTGAAGACAGCGT 59.895 50.000 8.99 0.00 46.95 5.07
271 272 0.319040 TCAGCACTGAAGACAGCGTC 60.319 55.000 0.00 1.15 46.95 5.19
272 273 1.372251 AGCACTGAAGACAGCGTCG 60.372 57.895 0.00 0.00 46.95 5.12
273 274 2.375766 GCACTGAAGACAGCGTCGG 61.376 63.158 0.00 0.00 46.95 4.79
280 281 3.414700 GACAGCGTCGGTTGCCAG 61.415 66.667 0.00 0.00 0.00 4.85
404 408 4.862823 GGTCTCCCCGCCTAGCCT 62.863 72.222 0.00 0.00 0.00 4.58
508 512 3.242673 GGATCTCGTCGTTGTTCGTCTAT 60.243 47.826 0.00 0.00 40.80 1.98
513 517 2.975193 CGTCGTTGTTCGTCTATGTTCA 59.025 45.455 0.00 0.00 40.80 3.18
613 617 0.669625 GGCCTTAGCACGACGACTTT 60.670 55.000 0.00 0.00 42.56 2.66
696 700 1.511305 CCTTCGGCTCGCTTCAGTA 59.489 57.895 0.00 0.00 0.00 2.74
697 701 0.103208 CCTTCGGCTCGCTTCAGTAT 59.897 55.000 0.00 0.00 0.00 2.12
747 751 8.630037 ACGGATCTGGATGTAATTTTTATTTCC 58.370 33.333 6.47 0.00 0.00 3.13
758 762 8.562892 TGTAATTTTTATTTCCGGTGTTCGTTA 58.437 29.630 0.00 0.00 37.11 3.18
763 767 8.994429 TTTTATTTCCGGTGTTCGTTATACTA 57.006 30.769 0.00 0.00 37.11 1.82
777 781 9.309516 GTTCGTTATACTACCATGATTGAAGAA 57.690 33.333 0.00 0.00 0.00 2.52
977 984 2.450345 CCGTAAGCGAAACGAGCCC 61.450 63.158 9.61 0.00 42.90 5.19
1338 1357 1.112113 GGCATTACCTCCTCTCGTCA 58.888 55.000 0.00 0.00 34.51 4.35
1490 1509 1.963515 CCTTTGGTTGAGAAAGGTGGG 59.036 52.381 0.00 0.00 43.13 4.61
1555 1574 5.992829 ACGTTGATATGTGTTCACCAAACTA 59.007 36.000 0.37 0.00 38.76 2.24
1556 1575 6.653320 ACGTTGATATGTGTTCACCAAACTAT 59.347 34.615 0.37 0.00 38.76 2.12
1627 1646 8.158132 TCCAGTTTTCCACACTACAATATGTAA 58.842 33.333 0.00 0.00 31.67 2.41
1637 1656 7.921214 CACACTACAATATGTAACTAGGGTCTG 59.079 40.741 0.00 0.00 31.67 3.51
1719 1747 7.517614 TTGTAAGTTGTATGCATCAAAGGAA 57.482 32.000 0.19 0.00 0.00 3.36
1729 1757 2.417787 GCATCAAAGGAAAGCCCATGTC 60.418 50.000 0.00 0.00 37.41 3.06
1777 1805 3.980698 AGGCCTTCCTTATGGTTATGCTA 59.019 43.478 0.00 0.00 40.66 3.49
1888 1997 4.223032 GTGGATTTGAGGAGTTGTAGGAGA 59.777 45.833 0.00 0.00 0.00 3.71
1889 1998 4.223032 TGGATTTGAGGAGTTGTAGGAGAC 59.777 45.833 0.00 0.00 0.00 3.36
1891 2000 5.657302 GGATTTGAGGAGTTGTAGGAGACTA 59.343 44.000 0.00 0.00 43.67 2.59
1892 2001 6.183360 GGATTTGAGGAGTTGTAGGAGACTAG 60.183 46.154 0.00 0.00 45.49 2.57
1894 2003 3.850774 TGAGGAGTTGTAGGAGACTAGGA 59.149 47.826 0.00 0.00 45.49 2.94
1895 2004 4.080243 TGAGGAGTTGTAGGAGACTAGGAG 60.080 50.000 0.00 0.00 45.49 3.69
1896 2005 3.853784 AGGAGTTGTAGGAGACTAGGAGT 59.146 47.826 0.00 0.00 45.49 3.85
1897 2006 4.292836 AGGAGTTGTAGGAGACTAGGAGTT 59.707 45.833 0.00 0.00 45.49 3.01
1898 2007 5.491800 AGGAGTTGTAGGAGACTAGGAGTTA 59.508 44.000 0.00 0.00 45.49 2.24
1899 2008 5.824097 GGAGTTGTAGGAGACTAGGAGTTAG 59.176 48.000 0.00 0.00 45.49 2.34
1900 2009 6.352910 GGAGTTGTAGGAGACTAGGAGTTAGA 60.353 46.154 0.00 0.00 45.49 2.10
1901 2010 7.030234 AGTTGTAGGAGACTAGGAGTTAGAA 57.970 40.000 0.00 0.00 45.49 2.10
1947 2056 9.890629 AATGTGTAGATTGCTAGATCAGTAAAA 57.109 29.630 0.00 0.00 32.19 1.52
2096 2207 2.875296 ACCAGCTTAATGTGAGCCAAA 58.125 42.857 0.00 0.00 41.03 3.28
2179 2290 9.938280 AGTATGCTACACTTTTGTATCTAAACA 57.062 29.630 0.00 0.00 37.58 2.83
2312 2424 7.891183 ATTGTATGGGACAGGTACAAACAAATA 59.109 33.333 0.00 0.00 43.86 1.40
2350 2462 2.210424 AGAGCAGGCAGATCTGGAC 58.790 57.895 23.89 8.26 42.46 4.02
2439 2551 6.636562 TGGAATTTTTACTAAGCGGACAAA 57.363 33.333 0.00 0.00 0.00 2.83
2495 2607 3.269178 GAAAGGAGACATGAAGAGCCTG 58.731 50.000 0.00 0.00 0.00 4.85
2535 2647 1.269448 GGCGCAAGTTCAATCTTCCAA 59.731 47.619 10.83 0.00 41.68 3.53
2655 2767 3.675775 GCACAAAAACAGCCTTCTTGTCA 60.676 43.478 0.00 0.00 0.00 3.58
2677 2789 4.486125 TGCAATATGTACAGAGAAGGCA 57.514 40.909 0.33 3.04 0.00 4.75
2917 3029 5.765176 CAAAGACAACAATCTGATTCAGCA 58.235 37.500 8.89 0.00 0.00 4.41
3033 3145 0.694771 ACAGCTGCTTCCAATCCAGA 59.305 50.000 15.27 0.00 0.00 3.86
3340 3452 1.074471 GCCTAGTCCATCCCCTCCA 60.074 63.158 0.00 0.00 0.00 3.86
3425 3537 7.244886 TCTAATTCAGATCTCAACTTGTCCA 57.755 36.000 0.00 0.00 0.00 4.02
3784 3897 3.435671 CGGGTGAACTCAATGTTACCTTC 59.564 47.826 0.00 0.00 39.30 3.46
3880 4185 2.239907 AGGGTTTGCTATGAGAGGAACC 59.760 50.000 0.00 0.00 34.83 3.62
3908 4213 7.254863 GGGACGTTAAACATTGTTCTTTCTACA 60.255 37.037 1.83 0.00 0.00 2.74
3909 4214 8.287503 GGACGTTAAACATTGTTCTTTCTACAT 58.712 33.333 1.83 0.00 0.00 2.29
3910 4215 9.103048 GACGTTAAACATTGTTCTTTCTACATG 57.897 33.333 1.83 0.00 0.00 3.21
3911 4216 8.617809 ACGTTAAACATTGTTCTTTCTACATGT 58.382 29.630 2.69 2.69 0.00 3.21
3912 4217 9.103048 CGTTAAACATTGTTCTTTCTACATGTC 57.897 33.333 0.00 0.00 0.00 3.06
3913 4218 9.944663 GTTAAACATTGTTCTTTCTACATGTCA 57.055 29.630 0.00 0.00 0.00 3.58
3916 4221 6.533730 ACATTGTTCTTTCTACATGTCAGGA 58.466 36.000 0.00 0.00 0.00 3.86
3917 4222 6.428159 ACATTGTTCTTTCTACATGTCAGGAC 59.572 38.462 0.00 0.07 0.00 3.85
3969 4365 9.057089 GTGTAAATAGGAAAGATAAGGATGTGG 57.943 37.037 0.00 0.00 0.00 4.17
4082 4478 6.015688 ACGTTCTCCAGATAAATAATAGCGGA 60.016 38.462 0.00 0.00 0.00 5.54
4163 4559 6.403878 AGTAACTATGCTGTTCGGTGTAATT 58.596 36.000 0.00 0.00 0.00 1.40
4308 4704 9.799106 ACAATATATTTAGGGTCTCTTTGGATG 57.201 33.333 0.00 0.00 0.00 3.51
4542 4943 1.305549 CCAGCCAGGCTCCCAAAAT 60.306 57.895 12.53 0.00 36.40 1.82
4554 4957 4.518970 GGCTCCCAAAATCTTATATCGCAA 59.481 41.667 0.00 0.00 0.00 4.85
4595 4998 1.136891 TGGACTGGTCATGCATAGACG 59.863 52.381 17.40 10.64 36.87 4.18
4636 5039 8.545472 TGAGTAGTTTTACTAGGTTTATGCCAT 58.455 33.333 0.00 0.00 40.21 4.40
4637 5040 8.959705 AGTAGTTTTACTAGGTTTATGCCATC 57.040 34.615 0.00 0.00 38.35 3.51
4786 5193 5.488262 AGGCAATTTACCATTTTCAAGCT 57.512 34.783 0.00 0.00 0.00 3.74
4797 5204 6.951971 ACCATTTTCAAGCTAGATAGTGTCT 58.048 36.000 0.00 0.00 41.11 3.41
4798 5205 8.079211 ACCATTTTCAAGCTAGATAGTGTCTA 57.921 34.615 0.00 0.00 38.42 2.59
5075 5482 5.005740 GCTAACATATCATGATTGGAGGCA 58.994 41.667 14.65 0.00 0.00 4.75
5295 5704 7.402811 TTCTTGAAACTACAACACTACGATG 57.597 36.000 0.00 0.00 0.00 3.84
5305 5714 4.142071 ACAACACTACGATGCTCATGAGAT 60.142 41.667 27.04 15.87 0.00 2.75
5407 5816 3.277142 AAAGGCGAAGGTATTACTGGG 57.723 47.619 0.00 0.00 0.00 4.45
5408 5817 2.170012 AGGCGAAGGTATTACTGGGA 57.830 50.000 0.00 0.00 0.00 4.37
5600 6011 5.243954 GGAGGAGGTAATTCAAAGTTGCTTT 59.756 40.000 0.00 0.00 33.58 3.51
5611 6022 4.993584 TCAAAGTTGCTTTTGTTGCTTTCA 59.006 33.333 8.17 0.00 38.77 2.69
5614 6025 1.919918 TGCTTTTGTTGCTTTCACGG 58.080 45.000 0.00 0.00 0.00 4.94
5618 6029 1.088306 TTTGTTGCTTTCACGGTCGT 58.912 45.000 0.00 0.00 0.00 4.34
5694 6107 2.644676 GGGCCTAGTGTTGAGGATTTC 58.355 52.381 0.84 0.00 35.99 2.17
5985 6398 1.515952 CAGAGCTGAAGACGAGGCG 60.516 63.158 0.00 0.00 0.00 5.52
6166 6579 1.412710 ACTCTCAAGACGAGCCAACAA 59.587 47.619 0.00 0.00 41.98 2.83
6230 6643 6.058833 TCCTCTCTAGCTACAATACTGACTG 58.941 44.000 0.00 0.00 0.00 3.51
6231 6644 6.058833 CCTCTCTAGCTACAATACTGACTGA 58.941 44.000 0.00 0.00 0.00 3.41
6232 6645 6.017440 CCTCTCTAGCTACAATACTGACTGAC 60.017 46.154 0.00 0.00 0.00 3.51
6233 6646 6.654959 TCTCTAGCTACAATACTGACTGACT 58.345 40.000 0.00 0.00 0.00 3.41
6263 6676 5.503662 TGCAGAACATATACAGCCATTTG 57.496 39.130 0.00 0.00 0.00 2.32
6323 6736 2.909965 ACAACCCATGCGGCGTTT 60.910 55.556 9.37 0.00 33.26 3.60
6354 6767 0.792640 AGCGCTCGTGAAACTTCATG 59.207 50.000 2.64 5.46 43.79 3.07
6485 6898 1.902508 TGAATGAGAAAGAGGGCGAGT 59.097 47.619 0.00 0.00 0.00 4.18
6517 6930 4.209080 GCTTGTTCATGTGTAACCTTTTGC 59.791 41.667 0.00 0.00 34.36 3.68
6523 6936 3.791973 TGTGTAACCTTTTGCCTGTTG 57.208 42.857 0.00 0.00 34.36 3.33
6535 6948 1.133945 TGCCTGTTGGTTGCTGACTTA 60.134 47.619 0.00 0.00 35.27 2.24
6602 7208 8.748380 TGTCATGACATGATTTATCTCGTATC 57.252 34.615 24.56 4.44 42.04 2.24
6603 7209 8.359642 TGTCATGACATGATTTATCTCGTATCA 58.640 33.333 24.56 6.88 42.04 2.15
6604 7210 9.363763 GTCATGACATGATTTATCTCGTATCAT 57.636 33.333 20.67 0.00 42.04 2.45
6605 7211 9.933723 TCATGACATGATTTATCTCGTATCATT 57.066 29.630 14.24 0.00 37.00 2.57
6606 7212 9.968743 CATGACATGATTTATCTCGTATCATTG 57.031 33.333 10.03 0.00 37.00 2.82
6607 7213 9.716531 ATGACATGATTTATCTCGTATCATTGT 57.283 29.630 0.00 0.00 37.00 2.71
6637 7243 9.176181 ACTTTATTTATTTGTGTACTTTGTGCG 57.824 29.630 0.00 0.00 0.00 5.34
6652 7258 1.675483 TGTGCGTCATCTGCAAGTTTT 59.325 42.857 0.00 0.00 45.23 2.43
6681 7287 6.463995 TTGTTACTGTGGATCTTTGCTTTT 57.536 33.333 0.00 0.00 0.00 2.27
6694 7300 1.609208 TGCTTTTGAGTTCCTCAGGC 58.391 50.000 0.00 2.53 41.75 4.85
6703 7309 2.210013 TTCCTCAGGCTGCTCACGT 61.210 57.895 10.34 0.00 0.00 4.49
6825 7697 7.174946 CCCATAAGAAGTGTACAATGTGAAAGT 59.825 37.037 0.00 0.00 0.00 2.66
6914 7786 6.094881 TGGTTGAAAGTTAGGTTCACTTCTTG 59.905 38.462 0.00 0.00 34.78 3.02
6924 7796 3.119708 GGTTCACTTCTTGGCTAGCATTG 60.120 47.826 18.24 5.41 0.00 2.82
6934 7806 1.473677 GGCTAGCATTGTTGACATGCA 59.526 47.619 18.24 0.00 43.25 3.96
6941 7813 0.310543 TTGTTGACATGCAAGCGGTC 59.689 50.000 9.01 9.01 37.12 4.79
6942 7814 0.817229 TGTTGACATGCAAGCGGTCA 60.817 50.000 13.17 13.17 39.60 4.02
6943 7815 0.523072 GTTGACATGCAAGCGGTCAT 59.477 50.000 16.49 0.00 40.84 3.06
7184 8225 1.604378 CCACCCTGGATCGCTTTCT 59.396 57.895 0.00 0.00 40.96 2.52
7185 8226 0.035056 CCACCCTGGATCGCTTTCTT 60.035 55.000 0.00 0.00 40.96 2.52
7186 8227 1.373570 CACCCTGGATCGCTTTCTTC 58.626 55.000 0.00 0.00 0.00 2.87
7229 8275 9.128404 CTCATTTTCTCTATCCCAATGAATCAA 57.872 33.333 0.00 0.00 34.31 2.57
7249 8295 4.750598 TCAATGCATGTGTTTGGACAATTG 59.249 37.500 0.00 3.24 37.57 2.32
7250 8296 3.109044 TGCATGTGTTTGGACAATTGG 57.891 42.857 10.83 0.00 37.57 3.16
7252 8298 2.036992 GCATGTGTTTGGACAATTGGGA 59.963 45.455 10.83 0.00 37.57 4.37
7253 8299 3.861886 GCATGTGTTTGGACAATTGGGAG 60.862 47.826 10.83 0.00 37.57 4.30
7254 8300 3.304911 TGTGTTTGGACAATTGGGAGA 57.695 42.857 10.83 0.00 37.57 3.71
7256 8302 3.383185 TGTGTTTGGACAATTGGGAGAAC 59.617 43.478 10.83 9.66 37.57 3.01
7257 8303 3.383185 GTGTTTGGACAATTGGGAGAACA 59.617 43.478 10.83 11.94 37.57 3.18
7258 8304 3.383185 TGTTTGGACAATTGGGAGAACAC 59.617 43.478 10.83 0.00 31.49 3.32
7259 8305 3.304911 TTGGACAATTGGGAGAACACA 57.695 42.857 10.83 0.00 0.00 3.72
7313 8360 4.030452 GCACGCCCAAGCACTGTC 62.030 66.667 0.00 0.00 39.83 3.51
7314 8361 2.281070 CACGCCCAAGCACTGTCT 60.281 61.111 0.00 0.00 39.83 3.41
7316 8363 2.281070 CGCCCAAGCACTGTCTGT 60.281 61.111 0.00 0.00 39.83 3.41
7340 8387 6.001460 TGGACAAACGAGGAATCAAATTAGT 58.999 36.000 0.00 0.00 0.00 2.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.290622 AGCCCCACCTGCCAGTTG 62.291 66.667 0.00 0.00 0.00 3.16
1 2 4.290622 CAGCCCCACCTGCCAGTT 62.291 66.667 0.00 0.00 0.00 3.16
3 4 4.421515 CTCAGCCCCACCTGCCAG 62.422 72.222 0.00 0.00 32.87 4.85
4 5 4.980592 TCTCAGCCCCACCTGCCA 62.981 66.667 0.00 0.00 32.87 4.92
5 6 4.106925 CTCTCAGCCCCACCTGCC 62.107 72.222 0.00 0.00 32.87 4.85
6 7 4.106925 CCTCTCAGCCCCACCTGC 62.107 72.222 0.00 0.00 32.87 4.85
7 8 3.406200 CCCTCTCAGCCCCACCTG 61.406 72.222 0.00 0.00 0.00 4.00
8 9 2.713111 TTTCCCTCTCAGCCCCACCT 62.713 60.000 0.00 0.00 0.00 4.00
9 10 2.231380 TTTCCCTCTCAGCCCCACC 61.231 63.158 0.00 0.00 0.00 4.61
10 11 1.002011 GTTTCCCTCTCAGCCCCAC 60.002 63.158 0.00 0.00 0.00 4.61
11 12 0.118346 TAGTTTCCCTCTCAGCCCCA 59.882 55.000 0.00 0.00 0.00 4.96
12 13 1.210722 CTTAGTTTCCCTCTCAGCCCC 59.789 57.143 0.00 0.00 0.00 5.80
13 14 1.407575 GCTTAGTTTCCCTCTCAGCCC 60.408 57.143 0.00 0.00 0.00 5.19
14 15 1.557371 AGCTTAGTTTCCCTCTCAGCC 59.443 52.381 0.00 0.00 34.04 4.85
15 16 2.234908 TCAGCTTAGTTTCCCTCTCAGC 59.765 50.000 0.00 0.00 33.82 4.26
16 17 3.259374 TGTCAGCTTAGTTTCCCTCTCAG 59.741 47.826 0.00 0.00 0.00 3.35
17 18 3.239449 TGTCAGCTTAGTTTCCCTCTCA 58.761 45.455 0.00 0.00 0.00 3.27
18 19 3.963428 TGTCAGCTTAGTTTCCCTCTC 57.037 47.619 0.00 0.00 0.00 3.20
19 20 3.008485 CCTTGTCAGCTTAGTTTCCCTCT 59.992 47.826 0.00 0.00 0.00 3.69
20 21 3.244596 ACCTTGTCAGCTTAGTTTCCCTC 60.245 47.826 0.00 0.00 0.00 4.30
21 22 2.711547 ACCTTGTCAGCTTAGTTTCCCT 59.288 45.455 0.00 0.00 0.00 4.20
22 23 2.814336 CACCTTGTCAGCTTAGTTTCCC 59.186 50.000 0.00 0.00 0.00 3.97
23 24 3.477530 ACACCTTGTCAGCTTAGTTTCC 58.522 45.455 0.00 0.00 0.00 3.13
24 25 4.733972 GACACCTTGTCAGCTTAGTTTC 57.266 45.455 1.34 0.00 46.22 2.78
36 37 1.133915 ACCGGTCAAATGACACCTTGT 60.134 47.619 14.93 2.31 46.47 3.16
37 38 1.535462 GACCGGTCAAATGACACCTTG 59.465 52.381 29.75 1.76 46.47 3.61
38 39 1.142060 TGACCGGTCAAATGACACCTT 59.858 47.619 34.60 0.00 46.47 3.50
39 40 0.762418 TGACCGGTCAAATGACACCT 59.238 50.000 34.60 0.00 46.47 4.00
40 41 1.600023 TTGACCGGTCAAATGACACC 58.400 50.000 40.69 11.49 45.56 4.16
64 65 7.551262 TGTCACACCATATAGCTTCGTATTTTT 59.449 33.333 0.00 0.00 0.00 1.94
65 66 7.045416 TGTCACACCATATAGCTTCGTATTTT 58.955 34.615 0.00 0.00 0.00 1.82
66 67 6.578944 TGTCACACCATATAGCTTCGTATTT 58.421 36.000 0.00 0.00 0.00 1.40
67 68 6.156748 TGTCACACCATATAGCTTCGTATT 57.843 37.500 0.00 0.00 0.00 1.89
68 69 5.302059 ACTGTCACACCATATAGCTTCGTAT 59.698 40.000 0.00 0.00 0.00 3.06
69 70 4.643334 ACTGTCACACCATATAGCTTCGTA 59.357 41.667 0.00 0.00 0.00 3.43
70 71 3.447586 ACTGTCACACCATATAGCTTCGT 59.552 43.478 0.00 0.00 0.00 3.85
71 72 3.798878 CACTGTCACACCATATAGCTTCG 59.201 47.826 0.00 0.00 0.00 3.79
72 73 4.806247 GTCACTGTCACACCATATAGCTTC 59.194 45.833 0.00 0.00 0.00 3.86
73 74 4.383118 GGTCACTGTCACACCATATAGCTT 60.383 45.833 0.00 0.00 0.00 3.74
74 75 3.133003 GGTCACTGTCACACCATATAGCT 59.867 47.826 0.00 0.00 0.00 3.32
75 76 3.458189 GGTCACTGTCACACCATATAGC 58.542 50.000 0.00 0.00 0.00 2.97
76 77 3.130516 ACGGTCACTGTCACACCATATAG 59.869 47.826 0.00 0.00 0.00 1.31
77 78 3.093814 ACGGTCACTGTCACACCATATA 58.906 45.455 0.00 0.00 0.00 0.86
78 79 1.899814 ACGGTCACTGTCACACCATAT 59.100 47.619 0.00 0.00 0.00 1.78
79 80 1.334160 ACGGTCACTGTCACACCATA 58.666 50.000 0.00 0.00 0.00 2.74
80 81 1.334160 TACGGTCACTGTCACACCAT 58.666 50.000 0.00 0.00 0.00 3.55
81 82 1.334160 ATACGGTCACTGTCACACCA 58.666 50.000 0.00 0.00 0.00 4.17
82 83 3.581024 TTATACGGTCACTGTCACACC 57.419 47.619 0.00 0.00 0.00 4.16
83 84 4.561606 GTGATTATACGGTCACTGTCACAC 59.438 45.833 0.00 0.00 41.10 3.82
84 85 4.381185 GGTGATTATACGGTCACTGTCACA 60.381 45.833 0.00 0.00 43.23 3.58
85 86 4.110482 GGTGATTATACGGTCACTGTCAC 58.890 47.826 0.00 0.00 43.23 3.67
86 87 3.764972 TGGTGATTATACGGTCACTGTCA 59.235 43.478 0.00 0.00 43.23 3.58
87 88 4.380841 TGGTGATTATACGGTCACTGTC 57.619 45.455 0.00 0.00 43.23 3.51
88 89 6.127281 TGTTATGGTGATTATACGGTCACTGT 60.127 38.462 0.00 0.00 43.23 3.55
89 90 6.200286 GTGTTATGGTGATTATACGGTCACTG 59.800 42.308 10.30 0.00 43.23 3.66
90 91 6.278363 GTGTTATGGTGATTATACGGTCACT 58.722 40.000 10.30 0.00 43.23 3.41
91 92 5.174398 CGTGTTATGGTGATTATACGGTCAC 59.826 44.000 0.00 0.00 43.02 3.67
92 93 5.163530 ACGTGTTATGGTGATTATACGGTCA 60.164 40.000 0.00 0.00 34.90 4.02
93 94 5.284079 ACGTGTTATGGTGATTATACGGTC 58.716 41.667 0.00 0.00 34.90 4.79
94 95 5.266733 ACGTGTTATGGTGATTATACGGT 57.733 39.130 0.00 0.00 34.90 4.83
102 103 9.639601 CAGTCATTATATACGTGTTATGGTGAT 57.360 33.333 0.00 0.00 0.00 3.06
103 104 8.635328 ACAGTCATTATATACGTGTTATGGTGA 58.365 33.333 0.00 2.54 0.00 4.02
104 105 8.699749 CACAGTCATTATATACGTGTTATGGTG 58.300 37.037 0.00 0.32 0.00 4.17
105 106 8.418662 ACACAGTCATTATATACGTGTTATGGT 58.581 33.333 0.00 0.00 33.07 3.55
106 107 8.812147 ACACAGTCATTATATACGTGTTATGG 57.188 34.615 0.00 0.00 33.07 2.74
110 111 9.090692 GGTTAACACAGTCATTATATACGTGTT 57.909 33.333 8.10 9.61 41.50 3.32
111 112 7.433131 CGGTTAACACAGTCATTATATACGTGT 59.567 37.037 8.10 0.00 36.02 4.49
112 113 7.433131 ACGGTTAACACAGTCATTATATACGTG 59.567 37.037 8.10 0.00 0.00 4.49
113 114 7.483307 ACGGTTAACACAGTCATTATATACGT 58.517 34.615 8.10 0.00 0.00 3.57
114 115 7.919313 ACGGTTAACACAGTCATTATATACG 57.081 36.000 8.10 0.00 0.00 3.06
120 121 9.926158 TTAAGAATACGGTTAACACAGTCATTA 57.074 29.630 8.10 0.00 32.96 1.90
121 122 8.836268 TTAAGAATACGGTTAACACAGTCATT 57.164 30.769 8.10 5.58 32.96 2.57
122 123 8.092687 ACTTAAGAATACGGTTAACACAGTCAT 58.907 33.333 10.09 0.00 32.96 3.06
123 124 7.436118 ACTTAAGAATACGGTTAACACAGTCA 58.564 34.615 10.09 0.00 32.96 3.41
124 125 7.880059 ACTTAAGAATACGGTTAACACAGTC 57.120 36.000 10.09 0.69 32.96 3.51
125 126 8.359642 TGTACTTAAGAATACGGTTAACACAGT 58.640 33.333 10.09 6.87 35.30 3.55
126 127 8.746922 TGTACTTAAGAATACGGTTAACACAG 57.253 34.615 10.09 0.76 0.00 3.66
127 128 8.359642 ACTGTACTTAAGAATACGGTTAACACA 58.640 33.333 10.09 0.00 37.58 3.72
128 129 8.642020 CACTGTACTTAAGAATACGGTTAACAC 58.358 37.037 10.09 0.00 38.56 3.32
129 130 8.575589 TCACTGTACTTAAGAATACGGTTAACA 58.424 33.333 10.09 0.00 38.56 2.41
130 131 8.854312 GTCACTGTACTTAAGAATACGGTTAAC 58.146 37.037 10.09 9.67 38.56 2.01
131 132 8.028938 GGTCACTGTACTTAAGAATACGGTTAA 58.971 37.037 10.09 2.04 38.56 2.01
132 133 7.176515 TGGTCACTGTACTTAAGAATACGGTTA 59.823 37.037 10.09 2.61 38.56 2.85
133 134 6.015180 TGGTCACTGTACTTAAGAATACGGTT 60.015 38.462 10.09 0.00 38.56 4.44
134 135 5.477984 TGGTCACTGTACTTAAGAATACGGT 59.522 40.000 10.09 10.33 40.74 4.83
135 136 5.957798 TGGTCACTGTACTTAAGAATACGG 58.042 41.667 10.09 9.70 34.41 4.02
136 137 7.597743 ACTTTGGTCACTGTACTTAAGAATACG 59.402 37.037 10.09 2.31 0.00 3.06
137 138 8.709646 CACTTTGGTCACTGTACTTAAGAATAC 58.290 37.037 10.09 2.89 0.00 1.89
138 139 8.644216 TCACTTTGGTCACTGTACTTAAGAATA 58.356 33.333 10.09 0.00 0.00 1.75
139 140 7.506114 TCACTTTGGTCACTGTACTTAAGAAT 58.494 34.615 10.09 0.00 0.00 2.40
140 141 6.880484 TCACTTTGGTCACTGTACTTAAGAA 58.120 36.000 10.09 0.00 0.00 2.52
141 142 6.474140 TCACTTTGGTCACTGTACTTAAGA 57.526 37.500 10.09 0.00 0.00 2.10
142 143 6.292168 CGTTCACTTTGGTCACTGTACTTAAG 60.292 42.308 0.00 0.00 0.00 1.85
143 144 5.521010 CGTTCACTTTGGTCACTGTACTTAA 59.479 40.000 0.00 0.00 0.00 1.85
144 145 5.045215 CGTTCACTTTGGTCACTGTACTTA 58.955 41.667 0.00 0.00 0.00 2.24
145 146 3.869246 CGTTCACTTTGGTCACTGTACTT 59.131 43.478 0.00 0.00 0.00 2.24
146 147 3.118884 ACGTTCACTTTGGTCACTGTACT 60.119 43.478 0.00 0.00 0.00 2.73
147 148 3.192466 ACGTTCACTTTGGTCACTGTAC 58.808 45.455 0.00 0.00 0.00 2.90
148 149 3.530265 ACGTTCACTTTGGTCACTGTA 57.470 42.857 0.00 0.00 0.00 2.74
149 150 2.396590 ACGTTCACTTTGGTCACTGT 57.603 45.000 0.00 0.00 0.00 3.55
150 151 3.191669 TGTACGTTCACTTTGGTCACTG 58.808 45.455 0.00 0.00 0.00 3.66
151 152 3.530265 TGTACGTTCACTTTGGTCACT 57.470 42.857 0.00 0.00 0.00 3.41
152 153 3.805422 TCATGTACGTTCACTTTGGTCAC 59.195 43.478 0.00 0.00 0.00 3.67
153 154 3.805422 GTCATGTACGTTCACTTTGGTCA 59.195 43.478 0.00 0.00 0.00 4.02
154 155 3.805422 TGTCATGTACGTTCACTTTGGTC 59.195 43.478 0.00 0.00 0.00 4.02
155 156 3.799366 TGTCATGTACGTTCACTTTGGT 58.201 40.909 0.00 0.00 0.00 3.67
156 157 4.272504 ACTTGTCATGTACGTTCACTTTGG 59.727 41.667 0.00 0.00 0.00 3.28
157 158 5.403897 ACTTGTCATGTACGTTCACTTTG 57.596 39.130 0.00 0.00 0.00 2.77
158 159 5.583061 TGAACTTGTCATGTACGTTCACTTT 59.417 36.000 15.34 0.00 39.03 2.66
159 160 5.113383 TGAACTTGTCATGTACGTTCACTT 58.887 37.500 15.34 0.00 39.03 3.16
160 161 4.689071 TGAACTTGTCATGTACGTTCACT 58.311 39.130 15.34 0.00 39.03 3.41
161 162 4.506654 ACTGAACTTGTCATGTACGTTCAC 59.493 41.667 15.34 0.00 39.03 3.18
162 163 4.506288 CACTGAACTTGTCATGTACGTTCA 59.494 41.667 17.06 17.06 40.91 3.18
163 164 4.743151 TCACTGAACTTGTCATGTACGTTC 59.257 41.667 0.00 11.98 35.07 3.95
164 165 4.506654 GTCACTGAACTTGTCATGTACGTT 59.493 41.667 0.00 0.00 35.07 3.99
165 166 4.049186 GTCACTGAACTTGTCATGTACGT 58.951 43.478 0.00 0.00 35.07 3.57
166 167 3.428870 GGTCACTGAACTTGTCATGTACG 59.571 47.826 0.00 0.00 35.07 3.67
167 168 4.377021 TGGTCACTGAACTTGTCATGTAC 58.623 43.478 0.00 0.00 35.07 2.90
168 169 4.681074 TGGTCACTGAACTTGTCATGTA 57.319 40.909 0.00 0.00 35.07 2.29
169 170 3.558931 TGGTCACTGAACTTGTCATGT 57.441 42.857 0.00 0.00 35.07 3.21
170 171 4.067192 TGATGGTCACTGAACTTGTCATG 58.933 43.478 0.00 0.00 35.07 3.07
171 172 4.356405 TGATGGTCACTGAACTTGTCAT 57.644 40.909 0.00 0.00 35.07 3.06
172 173 3.836365 TGATGGTCACTGAACTTGTCA 57.164 42.857 0.00 0.00 34.17 3.58
173 174 4.516698 ACATTGATGGTCACTGAACTTGTC 59.483 41.667 4.59 0.00 32.25 3.18
174 175 4.464008 ACATTGATGGTCACTGAACTTGT 58.536 39.130 4.59 0.00 32.25 3.16
175 176 6.748333 ATACATTGATGGTCACTGAACTTG 57.252 37.500 4.59 0.00 32.25 3.16
176 177 7.765695 AAATACATTGATGGTCACTGAACTT 57.234 32.000 4.59 0.00 32.25 2.66
177 178 7.765695 AAAATACATTGATGGTCACTGAACT 57.234 32.000 4.59 0.00 32.25 3.01
178 179 8.730680 AGTAAAATACATTGATGGTCACTGAAC 58.269 33.333 4.59 0.00 32.25 3.18
179 180 8.862325 AGTAAAATACATTGATGGTCACTGAA 57.138 30.769 4.59 0.00 32.25 3.02
180 181 8.100164 TGAGTAAAATACATTGATGGTCACTGA 58.900 33.333 4.59 0.00 32.25 3.41
181 182 8.267620 TGAGTAAAATACATTGATGGTCACTG 57.732 34.615 0.00 0.00 33.82 3.66
182 183 8.862325 TTGAGTAAAATACATTGATGGTCACT 57.138 30.769 0.00 0.00 0.00 3.41
183 184 9.906660 TTTTGAGTAAAATACATTGATGGTCAC 57.093 29.630 0.00 0.00 31.13 3.67
193 194 9.840427 CGGATTTGTCTTTTGAGTAAAATACAT 57.160 29.630 0.00 0.00 40.37 2.29
194 195 8.293867 CCGGATTTGTCTTTTGAGTAAAATACA 58.706 33.333 0.00 0.00 39.56 2.29
195 196 8.508875 TCCGGATTTGTCTTTTGAGTAAAATAC 58.491 33.333 0.00 0.00 35.39 1.89
196 197 8.508875 GTCCGGATTTGTCTTTTGAGTAAAATA 58.491 33.333 7.81 0.00 35.39 1.40
197 198 7.368059 GTCCGGATTTGTCTTTTGAGTAAAAT 58.632 34.615 7.81 0.00 35.39 1.82
198 199 6.512091 CGTCCGGATTTGTCTTTTGAGTAAAA 60.512 38.462 7.81 0.00 34.75 1.52
199 200 5.049954 CGTCCGGATTTGTCTTTTGAGTAAA 60.050 40.000 7.81 0.00 0.00 2.01
200 201 4.449743 CGTCCGGATTTGTCTTTTGAGTAA 59.550 41.667 7.81 0.00 0.00 2.24
201 202 3.991773 CGTCCGGATTTGTCTTTTGAGTA 59.008 43.478 7.81 0.00 0.00 2.59
202 203 2.806244 CGTCCGGATTTGTCTTTTGAGT 59.194 45.455 7.81 0.00 0.00 3.41
203 204 2.806244 ACGTCCGGATTTGTCTTTTGAG 59.194 45.455 7.81 0.00 0.00 3.02
204 205 2.546368 CACGTCCGGATTTGTCTTTTGA 59.454 45.455 7.81 0.00 0.00 2.69
205 206 2.289547 ACACGTCCGGATTTGTCTTTTG 59.710 45.455 7.81 0.00 0.00 2.44
206 207 2.546789 GACACGTCCGGATTTGTCTTTT 59.453 45.455 28.53 7.74 36.29 2.27
207 208 2.140717 GACACGTCCGGATTTGTCTTT 58.859 47.619 28.53 8.04 36.29 2.52
208 209 1.343465 AGACACGTCCGGATTTGTCTT 59.657 47.619 31.07 20.86 45.06 3.01
209 210 0.966920 AGACACGTCCGGATTTGTCT 59.033 50.000 31.07 31.07 43.08 3.41
210 211 1.347320 GAGACACGTCCGGATTTGTC 58.653 55.000 28.58 28.58 38.95 3.18
211 212 0.037605 GGAGACACGTCCGGATTTGT 60.038 55.000 18.18 18.18 0.00 2.83
212 213 2.750815 GGAGACACGTCCGGATTTG 58.249 57.895 7.81 10.81 0.00 2.32
219 220 1.068474 CAACATTCGGAGACACGTCC 58.932 55.000 0.00 0.00 34.32 4.79
220 221 1.068474 CCAACATTCGGAGACACGTC 58.932 55.000 0.00 0.00 34.32 4.34
221 222 0.391597 ACCAACATTCGGAGACACGT 59.608 50.000 0.00 0.00 34.32 4.49
222 223 1.508632 AACCAACATTCGGAGACACG 58.491 50.000 0.00 0.00 34.32 4.49
223 224 3.000727 CCTAACCAACATTCGGAGACAC 58.999 50.000 0.00 0.00 34.32 3.67
224 225 2.901192 TCCTAACCAACATTCGGAGACA 59.099 45.455 0.00 0.00 34.32 3.41
225 226 3.604875 TCCTAACCAACATTCGGAGAC 57.395 47.619 0.00 0.00 34.32 3.36
226 227 4.627284 TTTCCTAACCAACATTCGGAGA 57.373 40.909 0.00 0.00 0.00 3.71
227 228 5.648092 AGAATTTCCTAACCAACATTCGGAG 59.352 40.000 0.00 0.00 0.00 4.63
228 229 5.566469 AGAATTTCCTAACCAACATTCGGA 58.434 37.500 0.00 0.00 0.00 4.55
229 230 5.897377 AGAATTTCCTAACCAACATTCGG 57.103 39.130 0.00 0.00 0.00 4.30
230 231 6.908825 TGAAGAATTTCCTAACCAACATTCG 58.091 36.000 0.00 0.00 32.09 3.34
231 232 6.808704 GCTGAAGAATTTCCTAACCAACATTC 59.191 38.462 0.00 0.00 32.09 2.67
232 233 6.267471 TGCTGAAGAATTTCCTAACCAACATT 59.733 34.615 0.00 0.00 32.09 2.71
233 234 5.774690 TGCTGAAGAATTTCCTAACCAACAT 59.225 36.000 0.00 0.00 32.09 2.71
234 235 5.009610 GTGCTGAAGAATTTCCTAACCAACA 59.990 40.000 0.00 0.00 32.09 3.33
235 236 5.241728 AGTGCTGAAGAATTTCCTAACCAAC 59.758 40.000 0.00 0.00 32.09 3.77
236 237 5.241506 CAGTGCTGAAGAATTTCCTAACCAA 59.758 40.000 0.00 0.00 32.09 3.67
237 238 4.761739 CAGTGCTGAAGAATTTCCTAACCA 59.238 41.667 0.00 0.00 32.09 3.67
238 239 5.003804 TCAGTGCTGAAGAATTTCCTAACC 58.996 41.667 0.00 0.00 36.53 2.85
239 240 6.560253 TTCAGTGCTGAAGAATTTCCTAAC 57.440 37.500 10.26 0.00 43.90 2.34
508 512 2.158885 TCAACCCGAAGACACATGAACA 60.159 45.455 0.00 0.00 0.00 3.18
513 517 2.305927 AGGATTCAACCCGAAGACACAT 59.694 45.455 0.00 0.00 36.95 3.21
613 617 4.139786 ACTTGTTGTAGTAGACAGTCGGA 58.860 43.478 0.00 0.00 39.88 4.55
696 700 2.159282 CCACCTAGCGACGACTACAAAT 60.159 50.000 0.00 0.00 0.00 2.32
697 701 1.200716 CCACCTAGCGACGACTACAAA 59.799 52.381 0.00 0.00 0.00 2.83
747 751 4.923893 TCATGGTAGTATAACGAACACCG 58.076 43.478 0.00 0.00 45.44 4.94
809 814 3.904234 GTGAAATAAAAACCGACGCTGTC 59.096 43.478 0.00 0.00 0.00 3.51
811 816 4.084013 AGAGTGAAATAAAAACCGACGCTG 60.084 41.667 0.00 0.00 0.00 5.18
960 967 1.411493 GAGGGCTCGTTTCGCTTACG 61.411 60.000 0.00 0.00 40.23 3.18
961 968 1.411493 CGAGGGCTCGTTTCGCTTAC 61.411 60.000 0.00 0.00 46.99 2.34
962 969 1.153901 CGAGGGCTCGTTTCGCTTA 60.154 57.895 0.00 0.00 46.99 3.09
1598 1617 5.570234 TTGTAGTGTGGAAAACTGGAAAC 57.430 39.130 0.00 0.00 33.41 2.78
1627 1646 4.021016 CAGCTTTGTTAGACAGACCCTAGT 60.021 45.833 0.00 0.00 0.00 2.57
1672 1699 1.067071 ACTAGCCGGTAAGCTCAACAC 60.067 52.381 1.90 0.00 43.67 3.32
1729 1757 4.978083 AATGCAAATGCTCTAGTTCCAG 57.022 40.909 6.97 0.00 42.66 3.86
1777 1805 3.137176 CCCCCATCTCATTCATACACAGT 59.863 47.826 0.00 0.00 0.00 3.55
1845 1954 4.700213 CCACCAAGATTGACCGAAGTAAAT 59.300 41.667 0.00 0.00 28.78 1.40
1853 1962 3.081061 TCAAATCCACCAAGATTGACCG 58.919 45.455 0.00 0.00 36.59 4.79
1947 2056 5.104610 ACTTTCTCCACTCATAGTGCATCAT 60.105 40.000 1.43 0.00 44.63 2.45
2087 2198 6.969473 GCTCATACTAAGAAAATTTGGCTCAC 59.031 38.462 0.00 0.00 0.00 3.51
2178 2289 8.801715 AGAAGCACACAAAAATACACTATTTG 57.198 30.769 0.00 0.00 38.32 2.32
2189 2300 5.050227 GCATTGCAATAGAAGCACACAAAAA 60.050 36.000 12.53 0.00 42.54 1.94
2194 2305 3.176708 CTGCATTGCAATAGAAGCACAC 58.823 45.455 12.53 0.00 42.54 3.82
2312 2424 5.301298 GCTCTGGAATAAGCTGATTTGGATT 59.699 40.000 0.00 0.00 35.60 3.01
2350 2462 5.011090 TCTCAATCGTAGAACCAGGATTG 57.989 43.478 10.67 10.67 45.54 2.67
2439 2551 0.251922 AGGGCCAACTGAATGCATGT 60.252 50.000 6.18 0.00 0.00 3.21
2495 2607 2.033801 CCTGATGGCGGTCATGATTTTC 59.966 50.000 0.00 0.00 35.97 2.29
2535 2647 5.086058 CAGTTCTGCAATTTATACGCGTTT 58.914 37.500 20.78 13.35 0.00 3.60
2655 2767 4.818546 GTGCCTTCTCTGTACATATTGCAT 59.181 41.667 0.00 0.00 0.00 3.96
2979 3091 0.689080 TTGCTTGGGGGTTCTGCAAA 60.689 50.000 0.00 0.00 40.10 3.68
3033 3145 1.339055 TGCTGCGCCTAAGTTGAAGAT 60.339 47.619 4.18 0.00 0.00 2.40
3079 3191 4.020218 TGAACAGGTTCTTGGTCTATGGAG 60.020 45.833 12.86 0.00 40.14 3.86
3312 3424 4.944317 GGGATGGACTAGGCTTTATATTGC 59.056 45.833 0.00 0.00 0.00 3.56
3340 3452 2.426024 GCTTGGTTCATGCATCTCACAT 59.574 45.455 0.00 0.00 35.13 3.21
3425 3537 2.257353 GTGCAAACTGCTCGGGATT 58.743 52.632 0.00 0.00 45.31 3.01
3513 3625 0.921896 ATAGCTTGCCTGGGACATGT 59.078 50.000 0.00 0.00 38.20 3.21
3763 3876 4.652822 AGAAGGTAACATTGAGTTCACCC 58.347 43.478 0.00 0.00 41.64 4.61
3840 4145 2.487934 CTTCGATGTGATGGATCCACC 58.512 52.381 18.99 8.28 39.54 4.61
3880 4185 5.432885 AAGAACAATGTTTAACGTCCCAG 57.567 39.130 0.00 0.00 0.00 4.45
3908 4213 3.244215 ACAGATCAAACACGTCCTGACAT 60.244 43.478 0.00 0.00 0.00 3.06
3909 4214 2.102420 ACAGATCAAACACGTCCTGACA 59.898 45.455 0.00 0.00 0.00 3.58
3910 4215 2.755650 ACAGATCAAACACGTCCTGAC 58.244 47.619 0.00 0.00 0.00 3.51
3911 4216 3.130633 CAACAGATCAAACACGTCCTGA 58.869 45.455 0.00 0.00 0.00 3.86
3912 4217 2.872245 ACAACAGATCAAACACGTCCTG 59.128 45.455 0.00 0.00 0.00 3.86
3913 4218 3.194005 ACAACAGATCAAACACGTCCT 57.806 42.857 0.00 0.00 0.00 3.85
3914 4219 3.311322 TCAACAACAGATCAAACACGTCC 59.689 43.478 0.00 0.00 0.00 4.79
3916 4221 4.188462 TCTCAACAACAGATCAAACACGT 58.812 39.130 0.00 0.00 0.00 4.49
3917 4222 4.319046 CCTCTCAACAACAGATCAAACACG 60.319 45.833 0.00 0.00 0.00 4.49
3969 4365 9.419297 GGAAATTAAACTGGGTTCAGATAAAAC 57.581 33.333 0.00 0.00 43.49 2.43
4027 4423 7.833682 AGTACATGTTCATGGTCCAAAATATCA 59.166 33.333 2.30 0.00 0.00 2.15
4035 4431 4.759693 GTGAAAGTACATGTTCATGGTCCA 59.240 41.667 2.30 0.00 36.23 4.02
4036 4432 4.142902 CGTGAAAGTACATGTTCATGGTCC 60.143 45.833 2.30 4.68 37.19 4.46
4082 4478 7.363793 CCTTGTTATGCAGCTTAATTTTAGGGT 60.364 37.037 4.17 0.00 0.00 4.34
4163 4559 4.160329 ACTCTGATCCTCCAACACAACTA 58.840 43.478 0.00 0.00 0.00 2.24
4308 4704 8.840867 CATCACTTTTCTTTTAAGATGCGTTAC 58.159 33.333 0.00 0.00 34.49 2.50
4516 4917 0.034670 GAGCCTGGCTGGAGTTGAAT 60.035 55.000 28.82 0.00 39.88 2.57
4542 4943 8.773645 CAAAATGTATCCTGTTGCGATATAAGA 58.226 33.333 0.00 0.00 0.00 2.10
4554 4957 7.287696 AGTCCAAGAAAACAAAATGTATCCTGT 59.712 33.333 0.00 0.00 0.00 4.00
4636 5039 8.762645 ACTTCTCACATGATACCTAATTTGAGA 58.237 33.333 0.00 0.09 37.15 3.27
4637 5040 8.954950 ACTTCTCACATGATACCTAATTTGAG 57.045 34.615 0.00 0.00 0.00 3.02
4797 5204 8.724229 GCAGTATCTGAATTGTATGCATGATTA 58.276 33.333 10.16 0.00 32.44 1.75
4798 5205 7.447545 AGCAGTATCTGAATTGTATGCATGATT 59.552 33.333 10.16 6.96 34.93 2.57
4822 5229 5.754778 ACGAACAACCAAAATAACTGTAGC 58.245 37.500 0.00 0.00 0.00 3.58
5075 5482 7.703058 ATATTCTTGTTTTTCTCCGGAACAT 57.297 32.000 5.23 0.00 33.73 2.71
5295 5704 3.465871 GTTCCTCTTCCATCTCATGAGC 58.534 50.000 18.36 0.00 0.00 4.26
5305 5714 1.302511 GCAAGGCGTTCCTCTTCCA 60.303 57.895 0.00 0.00 43.40 3.53
5407 5816 6.908825 TCAGCCACACACAAAAGTATAATTC 58.091 36.000 0.00 0.00 0.00 2.17
5408 5817 6.570378 GCTCAGCCACACACAAAAGTATAATT 60.570 38.462 0.00 0.00 0.00 1.40
5419 5830 0.109153 ATCAAGCTCAGCCACACACA 59.891 50.000 0.00 0.00 0.00 3.72
5600 6011 1.088306 AACGACCGTGAAAGCAACAA 58.912 45.000 0.00 0.00 0.00 2.83
5611 6022 4.094294 CACAATAAATCCATCAACGACCGT 59.906 41.667 0.00 0.00 0.00 4.83
5614 6025 9.567848 AATTAACACAATAAATCCATCAACGAC 57.432 29.630 0.00 0.00 0.00 4.34
5694 6107 7.275183 TCTTGGGTGTATGAGTCATTATGAAG 58.725 38.462 11.68 6.89 0.00 3.02
6166 6579 0.613777 GGAGGAAACGATGGTCCACT 59.386 55.000 0.00 0.00 36.28 4.00
6230 6643 1.527034 TGTTCTGCAATGAGCCAGTC 58.473 50.000 0.00 0.00 44.83 3.51
6231 6644 2.211250 ATGTTCTGCAATGAGCCAGT 57.789 45.000 0.00 0.00 44.83 4.00
6232 6645 4.818005 TGTATATGTTCTGCAATGAGCCAG 59.182 41.667 0.00 0.00 44.83 4.85
6233 6646 4.779696 TGTATATGTTCTGCAATGAGCCA 58.220 39.130 0.00 0.00 44.83 4.75
6263 6676 3.555956 CAGAACGGTGATACAGGTTATGC 59.444 47.826 0.00 0.00 0.00 3.14
6323 6736 2.281900 AGCGCTTGGCCCGTTTTA 60.282 55.556 2.64 0.00 45.17 1.52
6354 6767 3.744660 GTCAGGGGACATCAACATATCC 58.255 50.000 0.00 0.00 43.73 2.59
6439 6852 9.613428 ATTTCTTAGATCCGTTGACATAATCAA 57.387 29.630 0.00 0.00 45.39 2.57
6440 6853 9.045223 CATTTCTTAGATCCGTTGACATAATCA 57.955 33.333 0.00 0.00 34.65 2.57
6441 6854 9.261180 TCATTTCTTAGATCCGTTGACATAATC 57.739 33.333 0.00 0.00 0.00 1.75
6442 6855 9.613428 TTCATTTCTTAGATCCGTTGACATAAT 57.387 29.630 0.00 0.00 0.00 1.28
6443 6856 9.613428 ATTCATTTCTTAGATCCGTTGACATAA 57.387 29.630 0.00 0.00 0.00 1.90
6444 6857 9.045223 CATTCATTTCTTAGATCCGTTGACATA 57.955 33.333 0.00 0.00 0.00 2.29
6485 6898 3.631686 ACACATGAACAAGCAGCTAAACA 59.368 39.130 0.00 0.00 0.00 2.83
6517 6930 2.549754 CAGTAAGTCAGCAACCAACAGG 59.450 50.000 0.00 0.00 0.00 4.00
6523 6936 4.814771 ACAGTTTACAGTAAGTCAGCAACC 59.185 41.667 0.00 0.00 0.00 3.77
6535 6948 4.497291 TCCAAGGTCAACAGTTTACAGT 57.503 40.909 0.12 0.00 0.00 3.55
6611 7217 9.176181 CGCACAAAGTACACAAATAAATAAAGT 57.824 29.630 0.00 0.00 0.00 2.66
6612 7218 9.176181 ACGCACAAAGTACACAAATAAATAAAG 57.824 29.630 0.00 0.00 0.00 1.85
6613 7219 9.171701 GACGCACAAAGTACACAAATAAATAAA 57.828 29.630 0.00 0.00 0.00 1.40
6614 7220 8.343366 TGACGCACAAAGTACACAAATAAATAA 58.657 29.630 0.00 0.00 0.00 1.40
6615 7221 7.862648 TGACGCACAAAGTACACAAATAAATA 58.137 30.769 0.00 0.00 0.00 1.40
6616 7222 6.730175 TGACGCACAAAGTACACAAATAAAT 58.270 32.000 0.00 0.00 0.00 1.40
6617 7223 6.120378 TGACGCACAAAGTACACAAATAAA 57.880 33.333 0.00 0.00 0.00 1.40
6618 7224 5.736486 TGACGCACAAAGTACACAAATAA 57.264 34.783 0.00 0.00 0.00 1.40
6619 7225 5.699001 AGATGACGCACAAAGTACACAAATA 59.301 36.000 0.00 0.00 0.00 1.40
6620 7226 4.515191 AGATGACGCACAAAGTACACAAAT 59.485 37.500 0.00 0.00 0.00 2.32
6621 7227 3.874543 AGATGACGCACAAAGTACACAAA 59.125 39.130 0.00 0.00 0.00 2.83
6622 7228 3.247411 CAGATGACGCACAAAGTACACAA 59.753 43.478 0.00 0.00 0.00 3.33
6623 7229 2.799978 CAGATGACGCACAAAGTACACA 59.200 45.455 0.00 0.00 0.00 3.72
6652 7258 4.085357 AGATCCACAGTAACAAGCAACA 57.915 40.909 0.00 0.00 0.00 3.33
6659 7265 5.592282 TCAAAAGCAAAGATCCACAGTAACA 59.408 36.000 0.00 0.00 0.00 2.41
6694 7300 4.386230 CGTTTTGAGAATAACGTGAGCAG 58.614 43.478 0.00 0.00 0.00 4.24
6703 7309 7.095940 CGTTTACTGTCTCCGTTTTGAGAATAA 60.096 37.037 0.00 0.00 42.75 1.40
6793 7665 9.357161 ACATTGTACACTTCTTATGGGTTTTAA 57.643 29.630 0.00 0.00 0.00 1.52
6877 7749 8.793592 CCTAACTTTCAACCAAGCTATAACTTT 58.206 33.333 0.00 0.00 0.00 2.66
6914 7786 1.473677 TGCATGTCAACAATGCTAGCC 59.526 47.619 13.29 0.00 41.52 3.93
6924 7796 0.523072 ATGACCGCTTGCATGTCAAC 59.477 50.000 15.46 0.00 41.85 3.18
7176 8217 9.057089 AGAGAAGAAATAAAAAGAAGAAAGCGA 57.943 29.630 0.00 0.00 0.00 4.93
7229 8275 3.557475 CCCAATTGTCCAAACACATGCAT 60.557 43.478 4.43 0.00 34.35 3.96
7249 8295 1.680338 ACAAGCAGTTGTGTTCTCCC 58.320 50.000 0.00 0.00 45.58 4.30
7250 8296 5.348997 GTCTATACAAGCAGTTGTGTTCTCC 59.651 44.000 1.78 0.00 46.75 3.71
7252 8298 4.923871 CGTCTATACAAGCAGTTGTGTTCT 59.076 41.667 1.78 0.00 46.75 3.01
7253 8299 4.921515 TCGTCTATACAAGCAGTTGTGTTC 59.078 41.667 1.78 0.00 46.75 3.18
7254 8300 4.878439 TCGTCTATACAAGCAGTTGTGTT 58.122 39.130 1.78 0.00 46.75 3.32
7256 8302 5.576774 TCATTCGTCTATACAAGCAGTTGTG 59.423 40.000 1.78 0.00 46.75 3.33
7258 8304 5.233050 CCTCATTCGTCTATACAAGCAGTTG 59.767 44.000 0.00 0.00 39.82 3.16
7259 8305 5.352284 CCTCATTCGTCTATACAAGCAGTT 58.648 41.667 0.00 0.00 0.00 3.16
7313 8360 2.766313 TGATTCCTCGTTTGTCCACAG 58.234 47.619 0.00 0.00 0.00 3.66
7314 8361 2.920724 TGATTCCTCGTTTGTCCACA 57.079 45.000 0.00 0.00 0.00 4.17
7316 8363 6.001460 ACTAATTTGATTCCTCGTTTGTCCA 58.999 36.000 0.00 0.00 0.00 4.02



Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.