Multiple sequence alignment - TraesCS2B01G448400
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS2B01G448400 | chr2B | 100.000 | 6944 | 0 | 0 | 1 | 6944 | 641096167 | 641103110 | 0.000000e+00 | 12824.0 |
1 | TraesCS2B01G448400 | chr2B | 100.000 | 194 | 0 | 0 | 7153 | 7346 | 641103319 | 641103512 | 7.010000e-95 | 359.0 |
2 | TraesCS2B01G448400 | chr2A | 95.739 | 3004 | 94 | 15 | 813 | 3801 | 680507002 | 680509986 | 0.000000e+00 | 4807.0 |
3 | TraesCS2B01G448400 | chr2A | 96.033 | 2823 | 79 | 10 | 3794 | 6601 | 680510171 | 680512975 | 0.000000e+00 | 4562.0 |
4 | TraesCS2B01G448400 | chr2A | 92.718 | 206 | 15 | 0 | 6736 | 6941 | 680513534 | 680513739 | 1.550000e-76 | 298.0 |
5 | TraesCS2B01G448400 | chr2A | 90.104 | 192 | 13 | 3 | 7161 | 7346 | 680514128 | 680514319 | 2.050000e-60 | 244.0 |
6 | TraesCS2B01G448400 | chr2A | 91.241 | 137 | 12 | 0 | 6599 | 6735 | 680513134 | 680513270 | 3.500000e-43 | 187.0 |
7 | TraesCS2B01G448400 | chr2D | 94.934 | 3020 | 88 | 16 | 3907 | 6911 | 538279260 | 538282229 | 0.000000e+00 | 4669.0 |
8 | TraesCS2B01G448400 | chr2D | 95.439 | 2083 | 62 | 5 | 1827 | 3908 | 538277123 | 538279173 | 0.000000e+00 | 3290.0 |
9 | TraesCS2B01G448400 | chr2D | 95.155 | 1032 | 36 | 7 | 808 | 1828 | 538276015 | 538277043 | 0.000000e+00 | 1616.0 |
10 | TraesCS2B01G448400 | chr2D | 93.322 | 599 | 35 | 5 | 4203 | 4797 | 107944513 | 107945110 | 0.000000e+00 | 880.0 |
11 | TraesCS2B01G448400 | chr2D | 93.519 | 216 | 13 | 1 | 5174 | 5389 | 107945131 | 107945345 | 3.310000e-83 | 320.0 |
12 | TraesCS2B01G448400 | chr2D | 88.750 | 160 | 17 | 1 | 48 | 206 | 94457663 | 94457822 | 2.090000e-45 | 195.0 |
13 | TraesCS2B01G448400 | chr2D | 100.000 | 32 | 0 | 0 | 245 | 276 | 538275998 | 538276029 | 7.960000e-05 | 60.2 |
14 | TraesCS2B01G448400 | chrUn | 94.176 | 601 | 28 | 5 | 4203 | 4797 | 21182466 | 21183065 | 0.000000e+00 | 909.0 |
15 | TraesCS2B01G448400 | chrUn | 96.468 | 538 | 17 | 2 | 276 | 812 | 83928945 | 83928409 | 0.000000e+00 | 887.0 |
16 | TraesCS2B01G448400 | chrUn | 96.296 | 216 | 7 | 1 | 5174 | 5389 | 21183086 | 21183300 | 3.260000e-93 | 353.0 |
17 | TraesCS2B01G448400 | chrUn | 87.701 | 187 | 22 | 1 | 21 | 206 | 73632342 | 73632528 | 4.460000e-52 | 217.0 |
18 | TraesCS2B01G448400 | chr6D | 96.636 | 535 | 16 | 2 | 276 | 809 | 464465468 | 464466001 | 0.000000e+00 | 887.0 |
19 | TraesCS2B01G448400 | chr6D | 95.693 | 534 | 21 | 2 | 276 | 808 | 14615634 | 14616166 | 0.000000e+00 | 857.0 |
20 | TraesCS2B01G448400 | chr6D | 89.375 | 160 | 16 | 1 | 48 | 206 | 9462617 | 9462776 | 4.490000e-47 | 200.0 |
21 | TraesCS2B01G448400 | chr6D | 88.272 | 162 | 18 | 1 | 48 | 208 | 267236417 | 267236578 | 7.520000e-45 | 193.0 |
22 | TraesCS2B01G448400 | chr6D | 81.714 | 175 | 29 | 3 | 34 | 206 | 14256382 | 14256209 | 7.680000e-30 | 143.0 |
23 | TraesCS2B01G448400 | chr5B | 96.276 | 537 | 18 | 2 | 276 | 811 | 680927342 | 680927877 | 0.000000e+00 | 880.0 |
24 | TraesCS2B01G448400 | chr5B | 85.625 | 160 | 22 | 1 | 48 | 206 | 134910607 | 134910766 | 4.560000e-37 | 167.0 |
25 | TraesCS2B01G448400 | chr3A | 96.449 | 535 | 16 | 3 | 276 | 809 | 716637302 | 716636770 | 0.000000e+00 | 880.0 |
26 | TraesCS2B01G448400 | chr3D | 95.888 | 535 | 19 | 3 | 276 | 809 | 5040413 | 5039881 | 0.000000e+00 | 863.0 |
27 | TraesCS2B01G448400 | chr3D | 93.895 | 344 | 20 | 1 | 4203 | 4545 | 319530067 | 319529724 | 1.090000e-142 | 518.0 |
28 | TraesCS2B01G448400 | chr3D | 94.388 | 196 | 8 | 2 | 5194 | 5389 | 319529725 | 319529533 | 1.550000e-76 | 298.0 |
29 | TraesCS2B01G448400 | chr7B | 95.547 | 539 | 20 | 4 | 276 | 811 | 138474945 | 138475482 | 0.000000e+00 | 859.0 |
30 | TraesCS2B01G448400 | chr3B | 95.709 | 536 | 20 | 2 | 275 | 808 | 59705223 | 59704689 | 0.000000e+00 | 859.0 |
31 | TraesCS2B01G448400 | chr3B | 95.693 | 534 | 21 | 2 | 276 | 808 | 2501269 | 2501801 | 0.000000e+00 | 857.0 |
32 | TraesCS2B01G448400 | chr3B | 83.750 | 160 | 25 | 1 | 48 | 206 | 312195898 | 312196057 | 4.590000e-32 | 150.0 |
33 | TraesCS2B01G448400 | chr7A | 92.333 | 600 | 40 | 5 | 4203 | 4797 | 115569664 | 115569066 | 0.000000e+00 | 848.0 |
34 | TraesCS2B01G448400 | chr7A | 94.286 | 210 | 12 | 0 | 5174 | 5383 | 115569045 | 115568836 | 9.190000e-84 | 322.0 |
35 | TraesCS2B01G448400 | chr7D | 89.375 | 160 | 16 | 1 | 48 | 206 | 454325040 | 454324881 | 4.490000e-47 | 200.0 |
36 | TraesCS2B01G448400 | chr7D | 88.125 | 160 | 18 | 1 | 48 | 206 | 6883026 | 6883185 | 9.730000e-44 | 189.0 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS2B01G448400 | chr2B | 641096167 | 641103512 | 7345 | False | 6591.5 | 12824 | 100.0000 | 1 | 7346 | 2 | chr2B.!!$F1 | 7345 |
1 | TraesCS2B01G448400 | chr2A | 680507002 | 680514319 | 7317 | False | 2019.6 | 4807 | 93.1670 | 813 | 7346 | 5 | chr2A.!!$F1 | 6533 |
2 | TraesCS2B01G448400 | chr2D | 538275998 | 538282229 | 6231 | False | 2408.8 | 4669 | 96.3820 | 245 | 6911 | 4 | chr2D.!!$F3 | 6666 |
3 | TraesCS2B01G448400 | chr2D | 107944513 | 107945345 | 832 | False | 600.0 | 880 | 93.4205 | 4203 | 5389 | 2 | chr2D.!!$F2 | 1186 |
4 | TraesCS2B01G448400 | chrUn | 83928409 | 83928945 | 536 | True | 887.0 | 887 | 96.4680 | 276 | 812 | 1 | chrUn.!!$R1 | 536 |
5 | TraesCS2B01G448400 | chrUn | 21182466 | 21183300 | 834 | False | 631.0 | 909 | 95.2360 | 4203 | 5389 | 2 | chrUn.!!$F2 | 1186 |
6 | TraesCS2B01G448400 | chr6D | 464465468 | 464466001 | 533 | False | 887.0 | 887 | 96.6360 | 276 | 809 | 1 | chr6D.!!$F4 | 533 |
7 | TraesCS2B01G448400 | chr6D | 14615634 | 14616166 | 532 | False | 857.0 | 857 | 95.6930 | 276 | 808 | 1 | chr6D.!!$F2 | 532 |
8 | TraesCS2B01G448400 | chr5B | 680927342 | 680927877 | 535 | False | 880.0 | 880 | 96.2760 | 276 | 811 | 1 | chr5B.!!$F2 | 535 |
9 | TraesCS2B01G448400 | chr3A | 716636770 | 716637302 | 532 | True | 880.0 | 880 | 96.4490 | 276 | 809 | 1 | chr3A.!!$R1 | 533 |
10 | TraesCS2B01G448400 | chr3D | 5039881 | 5040413 | 532 | True | 863.0 | 863 | 95.8880 | 276 | 809 | 1 | chr3D.!!$R1 | 533 |
11 | TraesCS2B01G448400 | chr3D | 319529533 | 319530067 | 534 | True | 408.0 | 518 | 94.1415 | 4203 | 5389 | 2 | chr3D.!!$R2 | 1186 |
12 | TraesCS2B01G448400 | chr7B | 138474945 | 138475482 | 537 | False | 859.0 | 859 | 95.5470 | 276 | 811 | 1 | chr7B.!!$F1 | 535 |
13 | TraesCS2B01G448400 | chr3B | 59704689 | 59705223 | 534 | True | 859.0 | 859 | 95.7090 | 275 | 808 | 1 | chr3B.!!$R1 | 533 |
14 | TraesCS2B01G448400 | chr3B | 2501269 | 2501801 | 532 | False | 857.0 | 857 | 95.6930 | 276 | 808 | 1 | chr3B.!!$F1 | 532 |
15 | TraesCS2B01G448400 | chr7A | 115568836 | 115569664 | 828 | True | 585.0 | 848 | 93.3095 | 4203 | 5383 | 2 | chr7A.!!$R1 | 1180 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
230 | 231 | 0.037605 | ACAAATCCGGACGTGTCTCC | 60.038 | 55.000 | 6.12 | 0.00 | 0.00 | 3.71 | F |
697 | 701 | 0.103208 | CCTTCGGCTCGCTTCAGTAT | 59.897 | 55.000 | 0.00 | 0.00 | 0.00 | 2.12 | F |
1338 | 1357 | 1.112113 | GGCATTACCTCCTCTCGTCA | 58.888 | 55.000 | 0.00 | 0.00 | 34.51 | 4.35 | F |
2535 | 2647 | 1.269448 | GGCGCAAGTTCAATCTTCCAA | 59.731 | 47.619 | 10.83 | 0.00 | 41.68 | 3.53 | F |
3033 | 3145 | 0.694771 | ACAGCTGCTTCCAATCCAGA | 59.305 | 50.000 | 15.27 | 0.00 | 0.00 | 3.86 | F |
3340 | 3452 | 1.074471 | GCCTAGTCCATCCCCTCCA | 60.074 | 63.158 | 0.00 | 0.00 | 0.00 | 3.86 | F |
4595 | 4998 | 1.136891 | TGGACTGGTCATGCATAGACG | 59.863 | 52.381 | 17.40 | 10.64 | 36.87 | 4.18 | F |
5408 | 5817 | 2.170012 | AGGCGAAGGTATTACTGGGA | 57.830 | 50.000 | 0.00 | 0.00 | 0.00 | 4.37 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
1672 | 1699 | 1.067071 | ACTAGCCGGTAAGCTCAACAC | 60.067 | 52.381 | 1.90 | 0.0 | 43.67 | 3.32 | R |
2439 | 2551 | 0.251922 | AGGGCCAACTGAATGCATGT | 60.252 | 50.000 | 6.18 | 0.0 | 0.00 | 3.21 | R |
2979 | 3091 | 0.689080 | TTGCTTGGGGGTTCTGCAAA | 60.689 | 50.000 | 0.00 | 0.0 | 40.10 | 3.68 | R |
4516 | 4917 | 0.034670 | GAGCCTGGCTGGAGTTGAAT | 60.035 | 55.000 | 28.82 | 0.0 | 39.88 | 2.57 | R |
4822 | 5229 | 5.754778 | ACGAACAACCAAAATAACTGTAGC | 58.245 | 37.500 | 0.00 | 0.0 | 0.00 | 3.58 | R |
5305 | 5714 | 1.302511 | GCAAGGCGTTCCTCTTCCA | 60.303 | 57.895 | 0.00 | 0.0 | 43.40 | 3.53 | R |
5419 | 5830 | 0.109153 | ATCAAGCTCAGCCACACACA | 59.891 | 50.000 | 0.00 | 0.0 | 0.00 | 3.72 | R |
6924 | 7796 | 0.523072 | ATGACCGCTTGCATGTCAAC | 59.477 | 50.000 | 15.46 | 0.0 | 41.85 | 3.18 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
17 | 18 | 4.290622 | CAACTGGCAGGTGGGGCT | 62.291 | 66.667 | 24.89 | 0.00 | 0.00 | 5.19 |
18 | 19 | 4.290622 | AACTGGCAGGTGGGGCTG | 62.291 | 66.667 | 20.34 | 0.00 | 38.09 | 4.85 |
20 | 21 | 4.421515 | CTGGCAGGTGGGGCTGAG | 62.422 | 72.222 | 6.61 | 0.00 | 34.81 | 3.35 |
21 | 22 | 4.980592 | TGGCAGGTGGGGCTGAGA | 62.981 | 66.667 | 0.00 | 0.00 | 0.00 | 3.27 |
22 | 23 | 4.106925 | GGCAGGTGGGGCTGAGAG | 62.107 | 72.222 | 0.00 | 0.00 | 0.00 | 3.20 |
23 | 24 | 4.106925 | GCAGGTGGGGCTGAGAGG | 62.107 | 72.222 | 0.00 | 0.00 | 0.00 | 3.69 |
24 | 25 | 3.406200 | CAGGTGGGGCTGAGAGGG | 61.406 | 72.222 | 0.00 | 0.00 | 0.00 | 4.30 |
25 | 26 | 3.615811 | AGGTGGGGCTGAGAGGGA | 61.616 | 66.667 | 0.00 | 0.00 | 0.00 | 4.20 |
26 | 27 | 2.610859 | GGTGGGGCTGAGAGGGAA | 60.611 | 66.667 | 0.00 | 0.00 | 0.00 | 3.97 |
27 | 28 | 2.231380 | GGTGGGGCTGAGAGGGAAA | 61.231 | 63.158 | 0.00 | 0.00 | 0.00 | 3.13 |
28 | 29 | 1.002011 | GTGGGGCTGAGAGGGAAAC | 60.002 | 63.158 | 0.00 | 0.00 | 0.00 | 2.78 |
29 | 30 | 1.151810 | TGGGGCTGAGAGGGAAACT | 60.152 | 57.895 | 0.00 | 0.00 | 0.00 | 2.66 |
30 | 31 | 0.118346 | TGGGGCTGAGAGGGAAACTA | 59.882 | 55.000 | 0.00 | 0.00 | 0.00 | 2.24 |
31 | 32 | 1.286248 | GGGGCTGAGAGGGAAACTAA | 58.714 | 55.000 | 0.00 | 0.00 | 0.00 | 2.24 |
32 | 33 | 1.210722 | GGGGCTGAGAGGGAAACTAAG | 59.789 | 57.143 | 0.00 | 0.00 | 0.00 | 2.18 |
33 | 34 | 1.407575 | GGGCTGAGAGGGAAACTAAGC | 60.408 | 57.143 | 0.00 | 0.00 | 32.34 | 3.09 |
34 | 35 | 1.557371 | GGCTGAGAGGGAAACTAAGCT | 59.443 | 52.381 | 0.00 | 0.00 | 33.19 | 3.74 |
35 | 36 | 2.626840 | GCTGAGAGGGAAACTAAGCTG | 58.373 | 52.381 | 0.00 | 0.00 | 31.14 | 4.24 |
36 | 37 | 2.234908 | GCTGAGAGGGAAACTAAGCTGA | 59.765 | 50.000 | 0.00 | 0.00 | 31.14 | 4.26 |
37 | 38 | 3.855858 | CTGAGAGGGAAACTAAGCTGAC | 58.144 | 50.000 | 0.00 | 0.00 | 0.00 | 3.51 |
38 | 39 | 3.239449 | TGAGAGGGAAACTAAGCTGACA | 58.761 | 45.455 | 0.00 | 0.00 | 0.00 | 3.58 |
39 | 40 | 3.646162 | TGAGAGGGAAACTAAGCTGACAA | 59.354 | 43.478 | 0.00 | 0.00 | 0.00 | 3.18 |
40 | 41 | 4.249661 | GAGAGGGAAACTAAGCTGACAAG | 58.750 | 47.826 | 0.00 | 0.00 | 0.00 | 3.16 |
41 | 42 | 3.008485 | AGAGGGAAACTAAGCTGACAAGG | 59.992 | 47.826 | 0.00 | 0.00 | 0.00 | 3.61 |
42 | 43 | 2.711547 | AGGGAAACTAAGCTGACAAGGT | 59.288 | 45.455 | 0.00 | 0.00 | 34.99 | 3.50 |
43 | 44 | 2.814336 | GGGAAACTAAGCTGACAAGGTG | 59.186 | 50.000 | 0.00 | 0.00 | 33.40 | 4.00 |
44 | 45 | 3.477530 | GGAAACTAAGCTGACAAGGTGT | 58.522 | 45.455 | 0.00 | 0.00 | 33.40 | 4.16 |
54 | 55 | 2.969443 | GACAAGGTGTCATTTGACCG | 57.031 | 50.000 | 8.16 | 0.00 | 46.22 | 4.79 |
55 | 56 | 1.535462 | GACAAGGTGTCATTTGACCGG | 59.465 | 52.381 | 0.00 | 0.00 | 46.22 | 5.28 |
56 | 57 | 1.133915 | ACAAGGTGTCATTTGACCGGT | 60.134 | 47.619 | 6.92 | 6.92 | 44.15 | 5.28 |
57 | 58 | 1.535462 | CAAGGTGTCATTTGACCGGTC | 59.465 | 52.381 | 28.17 | 28.17 | 44.15 | 4.79 |
58 | 59 | 0.762418 | AGGTGTCATTTGACCGGTCA | 59.238 | 50.000 | 33.23 | 33.23 | 44.15 | 4.02 |
59 | 60 | 1.142060 | AGGTGTCATTTGACCGGTCAA | 59.858 | 47.619 | 39.59 | 39.59 | 46.72 | 3.18 |
89 | 90 | 7.478520 | AAAATACGAAGCTATATGGTGTGAC | 57.521 | 36.000 | 0.00 | 0.00 | 0.00 | 3.67 |
90 | 91 | 5.784578 | ATACGAAGCTATATGGTGTGACA | 57.215 | 39.130 | 0.00 | 0.00 | 0.00 | 3.58 |
91 | 92 | 4.046938 | ACGAAGCTATATGGTGTGACAG | 57.953 | 45.455 | 0.00 | 0.00 | 0.00 | 3.51 |
92 | 93 | 3.447586 | ACGAAGCTATATGGTGTGACAGT | 59.552 | 43.478 | 0.00 | 0.00 | 0.00 | 3.55 |
93 | 94 | 3.798878 | CGAAGCTATATGGTGTGACAGTG | 59.201 | 47.826 | 0.00 | 0.00 | 0.00 | 3.66 |
94 | 95 | 4.440112 | CGAAGCTATATGGTGTGACAGTGA | 60.440 | 45.833 | 0.00 | 0.00 | 0.00 | 3.41 |
95 | 96 | 4.392921 | AGCTATATGGTGTGACAGTGAC | 57.607 | 45.455 | 0.00 | 0.00 | 0.00 | 3.67 |
96 | 97 | 3.133003 | AGCTATATGGTGTGACAGTGACC | 59.867 | 47.826 | 0.00 | 0.00 | 0.00 | 4.02 |
97 | 98 | 2.672961 | ATATGGTGTGACAGTGACCG | 57.327 | 50.000 | 0.00 | 0.00 | 31.87 | 4.79 |
98 | 99 | 1.334160 | TATGGTGTGACAGTGACCGT | 58.666 | 50.000 | 0.00 | 0.00 | 33.46 | 4.83 |
99 | 100 | 1.334160 | ATGGTGTGACAGTGACCGTA | 58.666 | 50.000 | 0.00 | 0.00 | 31.87 | 4.02 |
100 | 101 | 1.334160 | TGGTGTGACAGTGACCGTAT | 58.666 | 50.000 | 0.00 | 0.00 | 31.87 | 3.06 |
101 | 102 | 2.516906 | TGGTGTGACAGTGACCGTATA | 58.483 | 47.619 | 0.00 | 0.00 | 31.87 | 1.47 |
102 | 103 | 2.892215 | TGGTGTGACAGTGACCGTATAA | 59.108 | 45.455 | 0.00 | 0.00 | 31.87 | 0.98 |
103 | 104 | 3.512329 | TGGTGTGACAGTGACCGTATAAT | 59.488 | 43.478 | 0.00 | 0.00 | 31.87 | 1.28 |
104 | 105 | 4.110482 | GGTGTGACAGTGACCGTATAATC | 58.890 | 47.826 | 0.00 | 0.00 | 0.00 | 1.75 |
105 | 106 | 4.381185 | GGTGTGACAGTGACCGTATAATCA | 60.381 | 45.833 | 0.00 | 0.00 | 0.00 | 2.57 |
106 | 107 | 4.561606 | GTGTGACAGTGACCGTATAATCAC | 59.438 | 45.833 | 0.00 | 0.00 | 44.64 | 3.06 |
107 | 108 | 4.110482 | GTGACAGTGACCGTATAATCACC | 58.890 | 47.826 | 0.00 | 0.00 | 45.28 | 4.02 |
108 | 109 | 3.764972 | TGACAGTGACCGTATAATCACCA | 59.235 | 43.478 | 0.00 | 0.47 | 45.28 | 4.17 |
109 | 110 | 4.404394 | TGACAGTGACCGTATAATCACCAT | 59.596 | 41.667 | 0.00 | 0.26 | 45.28 | 3.55 |
110 | 111 | 5.595133 | TGACAGTGACCGTATAATCACCATA | 59.405 | 40.000 | 0.00 | 0.00 | 45.28 | 2.74 |
111 | 112 | 6.097129 | TGACAGTGACCGTATAATCACCATAA | 59.903 | 38.462 | 0.00 | 0.00 | 45.28 | 1.90 |
112 | 113 | 6.278363 | ACAGTGACCGTATAATCACCATAAC | 58.722 | 40.000 | 0.00 | 0.00 | 45.28 | 1.89 |
113 | 114 | 6.127281 | ACAGTGACCGTATAATCACCATAACA | 60.127 | 38.462 | 0.00 | 0.00 | 45.28 | 2.41 |
114 | 115 | 6.200286 | CAGTGACCGTATAATCACCATAACAC | 59.800 | 42.308 | 8.65 | 0.00 | 45.28 | 3.32 |
115 | 116 | 5.174398 | GTGACCGTATAATCACCATAACACG | 59.826 | 44.000 | 0.00 | 0.00 | 39.49 | 4.49 |
116 | 117 | 5.163530 | TGACCGTATAATCACCATAACACGT | 60.164 | 40.000 | 0.00 | 0.00 | 0.00 | 4.49 |
117 | 118 | 6.039159 | TGACCGTATAATCACCATAACACGTA | 59.961 | 38.462 | 0.00 | 0.00 | 0.00 | 3.57 |
118 | 119 | 6.985117 | ACCGTATAATCACCATAACACGTAT | 58.015 | 36.000 | 0.00 | 0.00 | 0.00 | 3.06 |
119 | 120 | 8.109705 | ACCGTATAATCACCATAACACGTATA | 57.890 | 34.615 | 0.00 | 0.00 | 0.00 | 1.47 |
120 | 121 | 8.742777 | ACCGTATAATCACCATAACACGTATAT | 58.257 | 33.333 | 0.00 | 0.00 | 0.00 | 0.86 |
128 | 129 | 9.639601 | ATCACCATAACACGTATATAATGACTG | 57.360 | 33.333 | 0.00 | 0.00 | 0.00 | 3.51 |
129 | 130 | 8.635328 | TCACCATAACACGTATATAATGACTGT | 58.365 | 33.333 | 0.00 | 0.00 | 0.00 | 3.55 |
130 | 131 | 8.699749 | CACCATAACACGTATATAATGACTGTG | 58.300 | 37.037 | 0.00 | 0.00 | 0.00 | 3.66 |
131 | 132 | 8.418662 | ACCATAACACGTATATAATGACTGTGT | 58.581 | 33.333 | 0.00 | 0.00 | 40.48 | 3.72 |
132 | 133 | 9.256477 | CCATAACACGTATATAATGACTGTGTT | 57.744 | 33.333 | 11.83 | 11.83 | 46.89 | 3.32 |
136 | 137 | 8.638685 | ACACGTATATAATGACTGTGTTAACC | 57.361 | 34.615 | 2.48 | 0.00 | 35.74 | 2.85 |
137 | 138 | 7.433131 | ACACGTATATAATGACTGTGTTAACCG | 59.567 | 37.037 | 2.48 | 0.00 | 35.74 | 4.44 |
138 | 139 | 7.433131 | CACGTATATAATGACTGTGTTAACCGT | 59.567 | 37.037 | 2.48 | 0.00 | 0.00 | 4.83 |
139 | 140 | 8.620416 | ACGTATATAATGACTGTGTTAACCGTA | 58.380 | 33.333 | 2.48 | 0.00 | 0.00 | 4.02 |
140 | 141 | 9.616634 | CGTATATAATGACTGTGTTAACCGTAT | 57.383 | 33.333 | 2.48 | 0.00 | 0.00 | 3.06 |
146 | 147 | 8.836268 | AATGACTGTGTTAACCGTATTCTTAA | 57.164 | 30.769 | 2.48 | 0.00 | 0.00 | 1.85 |
147 | 148 | 7.878477 | TGACTGTGTTAACCGTATTCTTAAG | 57.122 | 36.000 | 2.48 | 0.00 | 0.00 | 1.85 |
148 | 149 | 7.436118 | TGACTGTGTTAACCGTATTCTTAAGT | 58.564 | 34.615 | 2.48 | 0.00 | 0.00 | 2.24 |
149 | 150 | 8.575589 | TGACTGTGTTAACCGTATTCTTAAGTA | 58.424 | 33.333 | 2.48 | 0.00 | 0.00 | 2.24 |
150 | 151 | 8.748380 | ACTGTGTTAACCGTATTCTTAAGTAC | 57.252 | 34.615 | 2.48 | 0.00 | 0.00 | 2.73 |
151 | 152 | 8.359642 | ACTGTGTTAACCGTATTCTTAAGTACA | 58.640 | 33.333 | 2.48 | 0.00 | 0.00 | 2.90 |
152 | 153 | 8.746922 | TGTGTTAACCGTATTCTTAAGTACAG | 57.253 | 34.615 | 2.48 | 0.00 | 0.00 | 2.74 |
153 | 154 | 8.359642 | TGTGTTAACCGTATTCTTAAGTACAGT | 58.640 | 33.333 | 2.48 | 0.00 | 0.00 | 3.55 |
154 | 155 | 8.642020 | GTGTTAACCGTATTCTTAAGTACAGTG | 58.358 | 37.037 | 2.48 | 0.00 | 0.00 | 3.66 |
155 | 156 | 8.575589 | TGTTAACCGTATTCTTAAGTACAGTGA | 58.424 | 33.333 | 2.48 | 0.00 | 0.00 | 3.41 |
156 | 157 | 8.854312 | GTTAACCGTATTCTTAAGTACAGTGAC | 58.146 | 37.037 | 1.63 | 0.00 | 0.00 | 3.67 |
157 | 158 | 5.958955 | ACCGTATTCTTAAGTACAGTGACC | 58.041 | 41.667 | 1.63 | 0.00 | 0.00 | 4.02 |
158 | 159 | 5.477984 | ACCGTATTCTTAAGTACAGTGACCA | 59.522 | 40.000 | 1.63 | 0.00 | 0.00 | 4.02 |
159 | 160 | 6.015180 | ACCGTATTCTTAAGTACAGTGACCAA | 60.015 | 38.462 | 1.63 | 0.00 | 0.00 | 3.67 |
160 | 161 | 6.869913 | CCGTATTCTTAAGTACAGTGACCAAA | 59.130 | 38.462 | 1.63 | 0.00 | 0.00 | 3.28 |
161 | 162 | 7.063074 | CCGTATTCTTAAGTACAGTGACCAAAG | 59.937 | 40.741 | 1.63 | 0.00 | 0.00 | 2.77 |
162 | 163 | 7.597743 | CGTATTCTTAAGTACAGTGACCAAAGT | 59.402 | 37.037 | 1.63 | 0.00 | 0.00 | 2.66 |
163 | 164 | 7.730364 | ATTCTTAAGTACAGTGACCAAAGTG | 57.270 | 36.000 | 1.63 | 0.00 | 0.00 | 3.16 |
164 | 165 | 6.474140 | TCTTAAGTACAGTGACCAAAGTGA | 57.526 | 37.500 | 1.63 | 0.00 | 0.00 | 3.41 |
165 | 166 | 6.880484 | TCTTAAGTACAGTGACCAAAGTGAA | 58.120 | 36.000 | 1.63 | 0.00 | 0.00 | 3.18 |
166 | 167 | 6.759827 | TCTTAAGTACAGTGACCAAAGTGAAC | 59.240 | 38.462 | 1.63 | 0.00 | 0.00 | 3.18 |
167 | 168 | 3.454375 | AGTACAGTGACCAAAGTGAACG | 58.546 | 45.455 | 0.00 | 0.00 | 0.00 | 3.95 |
168 | 169 | 2.396590 | ACAGTGACCAAAGTGAACGT | 57.603 | 45.000 | 0.00 | 0.00 | 0.00 | 3.99 |
169 | 170 | 3.530265 | ACAGTGACCAAAGTGAACGTA | 57.470 | 42.857 | 0.00 | 0.00 | 0.00 | 3.57 |
170 | 171 | 3.192466 | ACAGTGACCAAAGTGAACGTAC | 58.808 | 45.455 | 0.00 | 0.00 | 0.00 | 3.67 |
171 | 172 | 3.191669 | CAGTGACCAAAGTGAACGTACA | 58.808 | 45.455 | 0.00 | 0.00 | 0.00 | 2.90 |
172 | 173 | 3.807622 | CAGTGACCAAAGTGAACGTACAT | 59.192 | 43.478 | 0.00 | 0.00 | 0.00 | 2.29 |
173 | 174 | 3.807622 | AGTGACCAAAGTGAACGTACATG | 59.192 | 43.478 | 0.00 | 0.00 | 0.00 | 3.21 |
174 | 175 | 3.805422 | GTGACCAAAGTGAACGTACATGA | 59.195 | 43.478 | 0.00 | 0.00 | 0.00 | 3.07 |
175 | 176 | 3.805422 | TGACCAAAGTGAACGTACATGAC | 59.195 | 43.478 | 0.00 | 0.00 | 0.00 | 3.06 |
176 | 177 | 3.799366 | ACCAAAGTGAACGTACATGACA | 58.201 | 40.909 | 0.00 | 0.00 | 0.00 | 3.58 |
177 | 178 | 4.193090 | ACCAAAGTGAACGTACATGACAA | 58.807 | 39.130 | 0.00 | 0.00 | 0.00 | 3.18 |
178 | 179 | 4.272504 | ACCAAAGTGAACGTACATGACAAG | 59.727 | 41.667 | 0.00 | 0.00 | 0.00 | 3.16 |
179 | 180 | 4.272504 | CCAAAGTGAACGTACATGACAAGT | 59.727 | 41.667 | 0.00 | 0.00 | 0.00 | 3.16 |
180 | 181 | 5.220777 | CCAAAGTGAACGTACATGACAAGTT | 60.221 | 40.000 | 0.00 | 1.21 | 0.00 | 2.66 |
181 | 182 | 5.652744 | AAGTGAACGTACATGACAAGTTC | 57.347 | 39.130 | 17.15 | 17.15 | 40.90 | 3.01 |
182 | 183 | 4.689071 | AGTGAACGTACATGACAAGTTCA | 58.311 | 39.130 | 20.34 | 20.34 | 45.78 | 3.18 |
184 | 185 | 4.689071 | TGAACGTACATGACAAGTTCAGT | 58.311 | 39.130 | 20.34 | 0.00 | 43.95 | 3.41 |
185 | 186 | 4.506288 | TGAACGTACATGACAAGTTCAGTG | 59.494 | 41.667 | 20.34 | 0.00 | 43.95 | 3.66 |
186 | 187 | 4.316205 | ACGTACATGACAAGTTCAGTGA | 57.684 | 40.909 | 0.00 | 0.00 | 37.77 | 3.41 |
187 | 188 | 4.049186 | ACGTACATGACAAGTTCAGTGAC | 58.951 | 43.478 | 0.00 | 0.00 | 37.77 | 3.67 |
188 | 189 | 3.428870 | CGTACATGACAAGTTCAGTGACC | 59.571 | 47.826 | 0.00 | 0.00 | 37.77 | 4.02 |
189 | 190 | 3.558931 | ACATGACAAGTTCAGTGACCA | 57.441 | 42.857 | 0.00 | 0.00 | 37.77 | 4.02 |
190 | 191 | 4.090761 | ACATGACAAGTTCAGTGACCAT | 57.909 | 40.909 | 0.00 | 0.00 | 37.77 | 3.55 |
191 | 192 | 4.067896 | ACATGACAAGTTCAGTGACCATC | 58.932 | 43.478 | 0.00 | 0.00 | 37.77 | 3.51 |
192 | 193 | 3.836365 | TGACAAGTTCAGTGACCATCA | 57.164 | 42.857 | 0.00 | 0.00 | 0.00 | 3.07 |
193 | 194 | 4.149511 | TGACAAGTTCAGTGACCATCAA | 57.850 | 40.909 | 0.00 | 0.00 | 0.00 | 2.57 |
194 | 195 | 4.717877 | TGACAAGTTCAGTGACCATCAAT | 58.282 | 39.130 | 0.00 | 0.00 | 0.00 | 2.57 |
195 | 196 | 4.516321 | TGACAAGTTCAGTGACCATCAATG | 59.484 | 41.667 | 0.00 | 0.00 | 43.13 | 2.82 |
196 | 197 | 4.464008 | ACAAGTTCAGTGACCATCAATGT | 58.536 | 39.130 | 6.20 | 0.00 | 42.45 | 2.71 |
197 | 198 | 5.620206 | ACAAGTTCAGTGACCATCAATGTA | 58.380 | 37.500 | 6.20 | 0.00 | 42.45 | 2.29 |
198 | 199 | 6.240894 | ACAAGTTCAGTGACCATCAATGTAT | 58.759 | 36.000 | 6.20 | 0.00 | 42.45 | 2.29 |
199 | 200 | 6.716628 | ACAAGTTCAGTGACCATCAATGTATT | 59.283 | 34.615 | 6.20 | 0.00 | 42.45 | 1.89 |
200 | 201 | 7.231317 | ACAAGTTCAGTGACCATCAATGTATTT | 59.769 | 33.333 | 6.20 | 0.00 | 42.45 | 1.40 |
201 | 202 | 7.765695 | AGTTCAGTGACCATCAATGTATTTT | 57.234 | 32.000 | 6.20 | 0.00 | 42.45 | 1.82 |
202 | 203 | 8.862325 | AGTTCAGTGACCATCAATGTATTTTA | 57.138 | 30.769 | 6.20 | 0.00 | 42.45 | 1.52 |
203 | 204 | 8.730680 | AGTTCAGTGACCATCAATGTATTTTAC | 58.269 | 33.333 | 6.20 | 0.00 | 42.45 | 2.01 |
204 | 205 | 8.730680 | GTTCAGTGACCATCAATGTATTTTACT | 58.269 | 33.333 | 6.20 | 0.00 | 42.45 | 2.24 |
205 | 206 | 8.492673 | TCAGTGACCATCAATGTATTTTACTC | 57.507 | 34.615 | 6.20 | 0.00 | 42.45 | 2.59 |
206 | 207 | 8.100164 | TCAGTGACCATCAATGTATTTTACTCA | 58.900 | 33.333 | 6.20 | 0.00 | 42.45 | 3.41 |
207 | 208 | 8.729756 | CAGTGACCATCAATGTATTTTACTCAA | 58.270 | 33.333 | 0.00 | 0.00 | 37.65 | 3.02 |
208 | 209 | 9.295825 | AGTGACCATCAATGTATTTTACTCAAA | 57.704 | 29.630 | 0.00 | 0.00 | 0.00 | 2.69 |
209 | 210 | 9.906660 | GTGACCATCAATGTATTTTACTCAAAA | 57.093 | 29.630 | 0.00 | 0.00 | 38.00 | 2.44 |
220 | 221 | 8.669394 | GTATTTTACTCAAAAGACAAATCCGG | 57.331 | 34.615 | 0.00 | 0.00 | 42.66 | 5.14 |
221 | 222 | 6.945938 | TTTTACTCAAAAGACAAATCCGGA | 57.054 | 33.333 | 6.61 | 6.61 | 0.00 | 5.14 |
222 | 223 | 5.934935 | TTACTCAAAAGACAAATCCGGAC | 57.065 | 39.130 | 6.12 | 0.00 | 0.00 | 4.79 |
223 | 224 | 2.806244 | ACTCAAAAGACAAATCCGGACG | 59.194 | 45.455 | 6.12 | 0.00 | 0.00 | 4.79 |
224 | 225 | 2.806244 | CTCAAAAGACAAATCCGGACGT | 59.194 | 45.455 | 6.12 | 4.06 | 0.00 | 4.34 |
225 | 226 | 2.546368 | TCAAAAGACAAATCCGGACGTG | 59.454 | 45.455 | 6.12 | 10.87 | 0.00 | 4.49 |
226 | 227 | 2.249844 | AAAGACAAATCCGGACGTGT | 57.750 | 45.000 | 19.22 | 19.22 | 0.00 | 4.49 |
227 | 228 | 1.792006 | AAGACAAATCCGGACGTGTC | 58.208 | 50.000 | 29.56 | 29.56 | 40.56 | 3.67 |
228 | 229 | 0.966920 | AGACAAATCCGGACGTGTCT | 59.033 | 50.000 | 32.06 | 32.06 | 44.51 | 3.41 |
229 | 230 | 1.067776 | AGACAAATCCGGACGTGTCTC | 60.068 | 52.381 | 32.06 | 17.94 | 45.88 | 3.36 |
230 | 231 | 0.037605 | ACAAATCCGGACGTGTCTCC | 60.038 | 55.000 | 6.12 | 0.00 | 0.00 | 3.71 |
237 | 238 | 3.509388 | GGACGTGTCTCCGAATGTT | 57.491 | 52.632 | 0.00 | 0.00 | 0.00 | 2.71 |
238 | 239 | 1.068474 | GGACGTGTCTCCGAATGTTG | 58.932 | 55.000 | 0.00 | 0.00 | 0.00 | 3.33 |
239 | 240 | 1.068474 | GACGTGTCTCCGAATGTTGG | 58.932 | 55.000 | 0.00 | 0.00 | 0.00 | 3.77 |
240 | 241 | 0.391597 | ACGTGTCTCCGAATGTTGGT | 59.608 | 50.000 | 0.00 | 0.00 | 0.00 | 3.67 |
241 | 242 | 1.202604 | ACGTGTCTCCGAATGTTGGTT | 60.203 | 47.619 | 0.00 | 0.00 | 0.00 | 3.67 |
242 | 243 | 2.036217 | ACGTGTCTCCGAATGTTGGTTA | 59.964 | 45.455 | 0.00 | 0.00 | 0.00 | 2.85 |
243 | 244 | 2.666508 | CGTGTCTCCGAATGTTGGTTAG | 59.333 | 50.000 | 0.00 | 0.00 | 0.00 | 2.34 |
269 | 270 | 2.904664 | TTCAGCACTGAAGACAGCG | 58.095 | 52.632 | 8.99 | 0.00 | 46.95 | 5.18 |
270 | 271 | 0.104855 | TTCAGCACTGAAGACAGCGT | 59.895 | 50.000 | 8.99 | 0.00 | 46.95 | 5.07 |
271 | 272 | 0.319040 | TCAGCACTGAAGACAGCGTC | 60.319 | 55.000 | 0.00 | 1.15 | 46.95 | 5.19 |
272 | 273 | 1.372251 | AGCACTGAAGACAGCGTCG | 60.372 | 57.895 | 0.00 | 0.00 | 46.95 | 5.12 |
273 | 274 | 2.375766 | GCACTGAAGACAGCGTCGG | 61.376 | 63.158 | 0.00 | 0.00 | 46.95 | 4.79 |
280 | 281 | 3.414700 | GACAGCGTCGGTTGCCAG | 61.415 | 66.667 | 0.00 | 0.00 | 0.00 | 4.85 |
404 | 408 | 4.862823 | GGTCTCCCCGCCTAGCCT | 62.863 | 72.222 | 0.00 | 0.00 | 0.00 | 4.58 |
508 | 512 | 3.242673 | GGATCTCGTCGTTGTTCGTCTAT | 60.243 | 47.826 | 0.00 | 0.00 | 40.80 | 1.98 |
513 | 517 | 2.975193 | CGTCGTTGTTCGTCTATGTTCA | 59.025 | 45.455 | 0.00 | 0.00 | 40.80 | 3.18 |
613 | 617 | 0.669625 | GGCCTTAGCACGACGACTTT | 60.670 | 55.000 | 0.00 | 0.00 | 42.56 | 2.66 |
696 | 700 | 1.511305 | CCTTCGGCTCGCTTCAGTA | 59.489 | 57.895 | 0.00 | 0.00 | 0.00 | 2.74 |
697 | 701 | 0.103208 | CCTTCGGCTCGCTTCAGTAT | 59.897 | 55.000 | 0.00 | 0.00 | 0.00 | 2.12 |
747 | 751 | 8.630037 | ACGGATCTGGATGTAATTTTTATTTCC | 58.370 | 33.333 | 6.47 | 0.00 | 0.00 | 3.13 |
758 | 762 | 8.562892 | TGTAATTTTTATTTCCGGTGTTCGTTA | 58.437 | 29.630 | 0.00 | 0.00 | 37.11 | 3.18 |
763 | 767 | 8.994429 | TTTTATTTCCGGTGTTCGTTATACTA | 57.006 | 30.769 | 0.00 | 0.00 | 37.11 | 1.82 |
777 | 781 | 9.309516 | GTTCGTTATACTACCATGATTGAAGAA | 57.690 | 33.333 | 0.00 | 0.00 | 0.00 | 2.52 |
977 | 984 | 2.450345 | CCGTAAGCGAAACGAGCCC | 61.450 | 63.158 | 9.61 | 0.00 | 42.90 | 5.19 |
1338 | 1357 | 1.112113 | GGCATTACCTCCTCTCGTCA | 58.888 | 55.000 | 0.00 | 0.00 | 34.51 | 4.35 |
1490 | 1509 | 1.963515 | CCTTTGGTTGAGAAAGGTGGG | 59.036 | 52.381 | 0.00 | 0.00 | 43.13 | 4.61 |
1555 | 1574 | 5.992829 | ACGTTGATATGTGTTCACCAAACTA | 59.007 | 36.000 | 0.37 | 0.00 | 38.76 | 2.24 |
1556 | 1575 | 6.653320 | ACGTTGATATGTGTTCACCAAACTAT | 59.347 | 34.615 | 0.37 | 0.00 | 38.76 | 2.12 |
1627 | 1646 | 8.158132 | TCCAGTTTTCCACACTACAATATGTAA | 58.842 | 33.333 | 0.00 | 0.00 | 31.67 | 2.41 |
1637 | 1656 | 7.921214 | CACACTACAATATGTAACTAGGGTCTG | 59.079 | 40.741 | 0.00 | 0.00 | 31.67 | 3.51 |
1719 | 1747 | 7.517614 | TTGTAAGTTGTATGCATCAAAGGAA | 57.482 | 32.000 | 0.19 | 0.00 | 0.00 | 3.36 |
1729 | 1757 | 2.417787 | GCATCAAAGGAAAGCCCATGTC | 60.418 | 50.000 | 0.00 | 0.00 | 37.41 | 3.06 |
1777 | 1805 | 3.980698 | AGGCCTTCCTTATGGTTATGCTA | 59.019 | 43.478 | 0.00 | 0.00 | 40.66 | 3.49 |
1888 | 1997 | 4.223032 | GTGGATTTGAGGAGTTGTAGGAGA | 59.777 | 45.833 | 0.00 | 0.00 | 0.00 | 3.71 |
1889 | 1998 | 4.223032 | TGGATTTGAGGAGTTGTAGGAGAC | 59.777 | 45.833 | 0.00 | 0.00 | 0.00 | 3.36 |
1891 | 2000 | 5.657302 | GGATTTGAGGAGTTGTAGGAGACTA | 59.343 | 44.000 | 0.00 | 0.00 | 43.67 | 2.59 |
1892 | 2001 | 6.183360 | GGATTTGAGGAGTTGTAGGAGACTAG | 60.183 | 46.154 | 0.00 | 0.00 | 45.49 | 2.57 |
1894 | 2003 | 3.850774 | TGAGGAGTTGTAGGAGACTAGGA | 59.149 | 47.826 | 0.00 | 0.00 | 45.49 | 2.94 |
1895 | 2004 | 4.080243 | TGAGGAGTTGTAGGAGACTAGGAG | 60.080 | 50.000 | 0.00 | 0.00 | 45.49 | 3.69 |
1896 | 2005 | 3.853784 | AGGAGTTGTAGGAGACTAGGAGT | 59.146 | 47.826 | 0.00 | 0.00 | 45.49 | 3.85 |
1897 | 2006 | 4.292836 | AGGAGTTGTAGGAGACTAGGAGTT | 59.707 | 45.833 | 0.00 | 0.00 | 45.49 | 3.01 |
1898 | 2007 | 5.491800 | AGGAGTTGTAGGAGACTAGGAGTTA | 59.508 | 44.000 | 0.00 | 0.00 | 45.49 | 2.24 |
1899 | 2008 | 5.824097 | GGAGTTGTAGGAGACTAGGAGTTAG | 59.176 | 48.000 | 0.00 | 0.00 | 45.49 | 2.34 |
1900 | 2009 | 6.352910 | GGAGTTGTAGGAGACTAGGAGTTAGA | 60.353 | 46.154 | 0.00 | 0.00 | 45.49 | 2.10 |
1901 | 2010 | 7.030234 | AGTTGTAGGAGACTAGGAGTTAGAA | 57.970 | 40.000 | 0.00 | 0.00 | 45.49 | 2.10 |
1947 | 2056 | 9.890629 | AATGTGTAGATTGCTAGATCAGTAAAA | 57.109 | 29.630 | 0.00 | 0.00 | 32.19 | 1.52 |
2096 | 2207 | 2.875296 | ACCAGCTTAATGTGAGCCAAA | 58.125 | 42.857 | 0.00 | 0.00 | 41.03 | 3.28 |
2179 | 2290 | 9.938280 | AGTATGCTACACTTTTGTATCTAAACA | 57.062 | 29.630 | 0.00 | 0.00 | 37.58 | 2.83 |
2312 | 2424 | 7.891183 | ATTGTATGGGACAGGTACAAACAAATA | 59.109 | 33.333 | 0.00 | 0.00 | 43.86 | 1.40 |
2350 | 2462 | 2.210424 | AGAGCAGGCAGATCTGGAC | 58.790 | 57.895 | 23.89 | 8.26 | 42.46 | 4.02 |
2439 | 2551 | 6.636562 | TGGAATTTTTACTAAGCGGACAAA | 57.363 | 33.333 | 0.00 | 0.00 | 0.00 | 2.83 |
2495 | 2607 | 3.269178 | GAAAGGAGACATGAAGAGCCTG | 58.731 | 50.000 | 0.00 | 0.00 | 0.00 | 4.85 |
2535 | 2647 | 1.269448 | GGCGCAAGTTCAATCTTCCAA | 59.731 | 47.619 | 10.83 | 0.00 | 41.68 | 3.53 |
2655 | 2767 | 3.675775 | GCACAAAAACAGCCTTCTTGTCA | 60.676 | 43.478 | 0.00 | 0.00 | 0.00 | 3.58 |
2677 | 2789 | 4.486125 | TGCAATATGTACAGAGAAGGCA | 57.514 | 40.909 | 0.33 | 3.04 | 0.00 | 4.75 |
2917 | 3029 | 5.765176 | CAAAGACAACAATCTGATTCAGCA | 58.235 | 37.500 | 8.89 | 0.00 | 0.00 | 4.41 |
3033 | 3145 | 0.694771 | ACAGCTGCTTCCAATCCAGA | 59.305 | 50.000 | 15.27 | 0.00 | 0.00 | 3.86 |
3340 | 3452 | 1.074471 | GCCTAGTCCATCCCCTCCA | 60.074 | 63.158 | 0.00 | 0.00 | 0.00 | 3.86 |
3425 | 3537 | 7.244886 | TCTAATTCAGATCTCAACTTGTCCA | 57.755 | 36.000 | 0.00 | 0.00 | 0.00 | 4.02 |
3784 | 3897 | 3.435671 | CGGGTGAACTCAATGTTACCTTC | 59.564 | 47.826 | 0.00 | 0.00 | 39.30 | 3.46 |
3880 | 4185 | 2.239907 | AGGGTTTGCTATGAGAGGAACC | 59.760 | 50.000 | 0.00 | 0.00 | 34.83 | 3.62 |
3908 | 4213 | 7.254863 | GGGACGTTAAACATTGTTCTTTCTACA | 60.255 | 37.037 | 1.83 | 0.00 | 0.00 | 2.74 |
3909 | 4214 | 8.287503 | GGACGTTAAACATTGTTCTTTCTACAT | 58.712 | 33.333 | 1.83 | 0.00 | 0.00 | 2.29 |
3910 | 4215 | 9.103048 | GACGTTAAACATTGTTCTTTCTACATG | 57.897 | 33.333 | 1.83 | 0.00 | 0.00 | 3.21 |
3911 | 4216 | 8.617809 | ACGTTAAACATTGTTCTTTCTACATGT | 58.382 | 29.630 | 2.69 | 2.69 | 0.00 | 3.21 |
3912 | 4217 | 9.103048 | CGTTAAACATTGTTCTTTCTACATGTC | 57.897 | 33.333 | 0.00 | 0.00 | 0.00 | 3.06 |
3913 | 4218 | 9.944663 | GTTAAACATTGTTCTTTCTACATGTCA | 57.055 | 29.630 | 0.00 | 0.00 | 0.00 | 3.58 |
3916 | 4221 | 6.533730 | ACATTGTTCTTTCTACATGTCAGGA | 58.466 | 36.000 | 0.00 | 0.00 | 0.00 | 3.86 |
3917 | 4222 | 6.428159 | ACATTGTTCTTTCTACATGTCAGGAC | 59.572 | 38.462 | 0.00 | 0.07 | 0.00 | 3.85 |
3969 | 4365 | 9.057089 | GTGTAAATAGGAAAGATAAGGATGTGG | 57.943 | 37.037 | 0.00 | 0.00 | 0.00 | 4.17 |
4082 | 4478 | 6.015688 | ACGTTCTCCAGATAAATAATAGCGGA | 60.016 | 38.462 | 0.00 | 0.00 | 0.00 | 5.54 |
4163 | 4559 | 6.403878 | AGTAACTATGCTGTTCGGTGTAATT | 58.596 | 36.000 | 0.00 | 0.00 | 0.00 | 1.40 |
4308 | 4704 | 9.799106 | ACAATATATTTAGGGTCTCTTTGGATG | 57.201 | 33.333 | 0.00 | 0.00 | 0.00 | 3.51 |
4542 | 4943 | 1.305549 | CCAGCCAGGCTCCCAAAAT | 60.306 | 57.895 | 12.53 | 0.00 | 36.40 | 1.82 |
4554 | 4957 | 4.518970 | GGCTCCCAAAATCTTATATCGCAA | 59.481 | 41.667 | 0.00 | 0.00 | 0.00 | 4.85 |
4595 | 4998 | 1.136891 | TGGACTGGTCATGCATAGACG | 59.863 | 52.381 | 17.40 | 10.64 | 36.87 | 4.18 |
4636 | 5039 | 8.545472 | TGAGTAGTTTTACTAGGTTTATGCCAT | 58.455 | 33.333 | 0.00 | 0.00 | 40.21 | 4.40 |
4637 | 5040 | 8.959705 | AGTAGTTTTACTAGGTTTATGCCATC | 57.040 | 34.615 | 0.00 | 0.00 | 38.35 | 3.51 |
4786 | 5193 | 5.488262 | AGGCAATTTACCATTTTCAAGCT | 57.512 | 34.783 | 0.00 | 0.00 | 0.00 | 3.74 |
4797 | 5204 | 6.951971 | ACCATTTTCAAGCTAGATAGTGTCT | 58.048 | 36.000 | 0.00 | 0.00 | 41.11 | 3.41 |
4798 | 5205 | 8.079211 | ACCATTTTCAAGCTAGATAGTGTCTA | 57.921 | 34.615 | 0.00 | 0.00 | 38.42 | 2.59 |
5075 | 5482 | 5.005740 | GCTAACATATCATGATTGGAGGCA | 58.994 | 41.667 | 14.65 | 0.00 | 0.00 | 4.75 |
5295 | 5704 | 7.402811 | TTCTTGAAACTACAACACTACGATG | 57.597 | 36.000 | 0.00 | 0.00 | 0.00 | 3.84 |
5305 | 5714 | 4.142071 | ACAACACTACGATGCTCATGAGAT | 60.142 | 41.667 | 27.04 | 15.87 | 0.00 | 2.75 |
5407 | 5816 | 3.277142 | AAAGGCGAAGGTATTACTGGG | 57.723 | 47.619 | 0.00 | 0.00 | 0.00 | 4.45 |
5408 | 5817 | 2.170012 | AGGCGAAGGTATTACTGGGA | 57.830 | 50.000 | 0.00 | 0.00 | 0.00 | 4.37 |
5600 | 6011 | 5.243954 | GGAGGAGGTAATTCAAAGTTGCTTT | 59.756 | 40.000 | 0.00 | 0.00 | 33.58 | 3.51 |
5611 | 6022 | 4.993584 | TCAAAGTTGCTTTTGTTGCTTTCA | 59.006 | 33.333 | 8.17 | 0.00 | 38.77 | 2.69 |
5614 | 6025 | 1.919918 | TGCTTTTGTTGCTTTCACGG | 58.080 | 45.000 | 0.00 | 0.00 | 0.00 | 4.94 |
5618 | 6029 | 1.088306 | TTTGTTGCTTTCACGGTCGT | 58.912 | 45.000 | 0.00 | 0.00 | 0.00 | 4.34 |
5694 | 6107 | 2.644676 | GGGCCTAGTGTTGAGGATTTC | 58.355 | 52.381 | 0.84 | 0.00 | 35.99 | 2.17 |
5985 | 6398 | 1.515952 | CAGAGCTGAAGACGAGGCG | 60.516 | 63.158 | 0.00 | 0.00 | 0.00 | 5.52 |
6166 | 6579 | 1.412710 | ACTCTCAAGACGAGCCAACAA | 59.587 | 47.619 | 0.00 | 0.00 | 41.98 | 2.83 |
6230 | 6643 | 6.058833 | TCCTCTCTAGCTACAATACTGACTG | 58.941 | 44.000 | 0.00 | 0.00 | 0.00 | 3.51 |
6231 | 6644 | 6.058833 | CCTCTCTAGCTACAATACTGACTGA | 58.941 | 44.000 | 0.00 | 0.00 | 0.00 | 3.41 |
6232 | 6645 | 6.017440 | CCTCTCTAGCTACAATACTGACTGAC | 60.017 | 46.154 | 0.00 | 0.00 | 0.00 | 3.51 |
6233 | 6646 | 6.654959 | TCTCTAGCTACAATACTGACTGACT | 58.345 | 40.000 | 0.00 | 0.00 | 0.00 | 3.41 |
6263 | 6676 | 5.503662 | TGCAGAACATATACAGCCATTTG | 57.496 | 39.130 | 0.00 | 0.00 | 0.00 | 2.32 |
6323 | 6736 | 2.909965 | ACAACCCATGCGGCGTTT | 60.910 | 55.556 | 9.37 | 0.00 | 33.26 | 3.60 |
6354 | 6767 | 0.792640 | AGCGCTCGTGAAACTTCATG | 59.207 | 50.000 | 2.64 | 5.46 | 43.79 | 3.07 |
6485 | 6898 | 1.902508 | TGAATGAGAAAGAGGGCGAGT | 59.097 | 47.619 | 0.00 | 0.00 | 0.00 | 4.18 |
6517 | 6930 | 4.209080 | GCTTGTTCATGTGTAACCTTTTGC | 59.791 | 41.667 | 0.00 | 0.00 | 34.36 | 3.68 |
6523 | 6936 | 3.791973 | TGTGTAACCTTTTGCCTGTTG | 57.208 | 42.857 | 0.00 | 0.00 | 34.36 | 3.33 |
6535 | 6948 | 1.133945 | TGCCTGTTGGTTGCTGACTTA | 60.134 | 47.619 | 0.00 | 0.00 | 35.27 | 2.24 |
6602 | 7208 | 8.748380 | TGTCATGACATGATTTATCTCGTATC | 57.252 | 34.615 | 24.56 | 4.44 | 42.04 | 2.24 |
6603 | 7209 | 8.359642 | TGTCATGACATGATTTATCTCGTATCA | 58.640 | 33.333 | 24.56 | 6.88 | 42.04 | 2.15 |
6604 | 7210 | 9.363763 | GTCATGACATGATTTATCTCGTATCAT | 57.636 | 33.333 | 20.67 | 0.00 | 42.04 | 2.45 |
6605 | 7211 | 9.933723 | TCATGACATGATTTATCTCGTATCATT | 57.066 | 29.630 | 14.24 | 0.00 | 37.00 | 2.57 |
6606 | 7212 | 9.968743 | CATGACATGATTTATCTCGTATCATTG | 57.031 | 33.333 | 10.03 | 0.00 | 37.00 | 2.82 |
6607 | 7213 | 9.716531 | ATGACATGATTTATCTCGTATCATTGT | 57.283 | 29.630 | 0.00 | 0.00 | 37.00 | 2.71 |
6637 | 7243 | 9.176181 | ACTTTATTTATTTGTGTACTTTGTGCG | 57.824 | 29.630 | 0.00 | 0.00 | 0.00 | 5.34 |
6652 | 7258 | 1.675483 | TGTGCGTCATCTGCAAGTTTT | 59.325 | 42.857 | 0.00 | 0.00 | 45.23 | 2.43 |
6681 | 7287 | 6.463995 | TTGTTACTGTGGATCTTTGCTTTT | 57.536 | 33.333 | 0.00 | 0.00 | 0.00 | 2.27 |
6694 | 7300 | 1.609208 | TGCTTTTGAGTTCCTCAGGC | 58.391 | 50.000 | 0.00 | 2.53 | 41.75 | 4.85 |
6703 | 7309 | 2.210013 | TTCCTCAGGCTGCTCACGT | 61.210 | 57.895 | 10.34 | 0.00 | 0.00 | 4.49 |
6825 | 7697 | 7.174946 | CCCATAAGAAGTGTACAATGTGAAAGT | 59.825 | 37.037 | 0.00 | 0.00 | 0.00 | 2.66 |
6914 | 7786 | 6.094881 | TGGTTGAAAGTTAGGTTCACTTCTTG | 59.905 | 38.462 | 0.00 | 0.00 | 34.78 | 3.02 |
6924 | 7796 | 3.119708 | GGTTCACTTCTTGGCTAGCATTG | 60.120 | 47.826 | 18.24 | 5.41 | 0.00 | 2.82 |
6934 | 7806 | 1.473677 | GGCTAGCATTGTTGACATGCA | 59.526 | 47.619 | 18.24 | 0.00 | 43.25 | 3.96 |
6941 | 7813 | 0.310543 | TTGTTGACATGCAAGCGGTC | 59.689 | 50.000 | 9.01 | 9.01 | 37.12 | 4.79 |
6942 | 7814 | 0.817229 | TGTTGACATGCAAGCGGTCA | 60.817 | 50.000 | 13.17 | 13.17 | 39.60 | 4.02 |
6943 | 7815 | 0.523072 | GTTGACATGCAAGCGGTCAT | 59.477 | 50.000 | 16.49 | 0.00 | 40.84 | 3.06 |
7184 | 8225 | 1.604378 | CCACCCTGGATCGCTTTCT | 59.396 | 57.895 | 0.00 | 0.00 | 40.96 | 2.52 |
7185 | 8226 | 0.035056 | CCACCCTGGATCGCTTTCTT | 60.035 | 55.000 | 0.00 | 0.00 | 40.96 | 2.52 |
7186 | 8227 | 1.373570 | CACCCTGGATCGCTTTCTTC | 58.626 | 55.000 | 0.00 | 0.00 | 0.00 | 2.87 |
7229 | 8275 | 9.128404 | CTCATTTTCTCTATCCCAATGAATCAA | 57.872 | 33.333 | 0.00 | 0.00 | 34.31 | 2.57 |
7249 | 8295 | 4.750598 | TCAATGCATGTGTTTGGACAATTG | 59.249 | 37.500 | 0.00 | 3.24 | 37.57 | 2.32 |
7250 | 8296 | 3.109044 | TGCATGTGTTTGGACAATTGG | 57.891 | 42.857 | 10.83 | 0.00 | 37.57 | 3.16 |
7252 | 8298 | 2.036992 | GCATGTGTTTGGACAATTGGGA | 59.963 | 45.455 | 10.83 | 0.00 | 37.57 | 4.37 |
7253 | 8299 | 3.861886 | GCATGTGTTTGGACAATTGGGAG | 60.862 | 47.826 | 10.83 | 0.00 | 37.57 | 4.30 |
7254 | 8300 | 3.304911 | TGTGTTTGGACAATTGGGAGA | 57.695 | 42.857 | 10.83 | 0.00 | 37.57 | 3.71 |
7256 | 8302 | 3.383185 | TGTGTTTGGACAATTGGGAGAAC | 59.617 | 43.478 | 10.83 | 9.66 | 37.57 | 3.01 |
7257 | 8303 | 3.383185 | GTGTTTGGACAATTGGGAGAACA | 59.617 | 43.478 | 10.83 | 11.94 | 37.57 | 3.18 |
7258 | 8304 | 3.383185 | TGTTTGGACAATTGGGAGAACAC | 59.617 | 43.478 | 10.83 | 0.00 | 31.49 | 3.32 |
7259 | 8305 | 3.304911 | TTGGACAATTGGGAGAACACA | 57.695 | 42.857 | 10.83 | 0.00 | 0.00 | 3.72 |
7313 | 8360 | 4.030452 | GCACGCCCAAGCACTGTC | 62.030 | 66.667 | 0.00 | 0.00 | 39.83 | 3.51 |
7314 | 8361 | 2.281070 | CACGCCCAAGCACTGTCT | 60.281 | 61.111 | 0.00 | 0.00 | 39.83 | 3.41 |
7316 | 8363 | 2.281070 | CGCCCAAGCACTGTCTGT | 60.281 | 61.111 | 0.00 | 0.00 | 39.83 | 3.41 |
7340 | 8387 | 6.001460 | TGGACAAACGAGGAATCAAATTAGT | 58.999 | 36.000 | 0.00 | 0.00 | 0.00 | 2.24 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
0 | 1 | 4.290622 | AGCCCCACCTGCCAGTTG | 62.291 | 66.667 | 0.00 | 0.00 | 0.00 | 3.16 |
1 | 2 | 4.290622 | CAGCCCCACCTGCCAGTT | 62.291 | 66.667 | 0.00 | 0.00 | 0.00 | 3.16 |
3 | 4 | 4.421515 | CTCAGCCCCACCTGCCAG | 62.422 | 72.222 | 0.00 | 0.00 | 32.87 | 4.85 |
4 | 5 | 4.980592 | TCTCAGCCCCACCTGCCA | 62.981 | 66.667 | 0.00 | 0.00 | 32.87 | 4.92 |
5 | 6 | 4.106925 | CTCTCAGCCCCACCTGCC | 62.107 | 72.222 | 0.00 | 0.00 | 32.87 | 4.85 |
6 | 7 | 4.106925 | CCTCTCAGCCCCACCTGC | 62.107 | 72.222 | 0.00 | 0.00 | 32.87 | 4.85 |
7 | 8 | 3.406200 | CCCTCTCAGCCCCACCTG | 61.406 | 72.222 | 0.00 | 0.00 | 0.00 | 4.00 |
8 | 9 | 2.713111 | TTTCCCTCTCAGCCCCACCT | 62.713 | 60.000 | 0.00 | 0.00 | 0.00 | 4.00 |
9 | 10 | 2.231380 | TTTCCCTCTCAGCCCCACC | 61.231 | 63.158 | 0.00 | 0.00 | 0.00 | 4.61 |
10 | 11 | 1.002011 | GTTTCCCTCTCAGCCCCAC | 60.002 | 63.158 | 0.00 | 0.00 | 0.00 | 4.61 |
11 | 12 | 0.118346 | TAGTTTCCCTCTCAGCCCCA | 59.882 | 55.000 | 0.00 | 0.00 | 0.00 | 4.96 |
12 | 13 | 1.210722 | CTTAGTTTCCCTCTCAGCCCC | 59.789 | 57.143 | 0.00 | 0.00 | 0.00 | 5.80 |
13 | 14 | 1.407575 | GCTTAGTTTCCCTCTCAGCCC | 60.408 | 57.143 | 0.00 | 0.00 | 0.00 | 5.19 |
14 | 15 | 1.557371 | AGCTTAGTTTCCCTCTCAGCC | 59.443 | 52.381 | 0.00 | 0.00 | 34.04 | 4.85 |
15 | 16 | 2.234908 | TCAGCTTAGTTTCCCTCTCAGC | 59.765 | 50.000 | 0.00 | 0.00 | 33.82 | 4.26 |
16 | 17 | 3.259374 | TGTCAGCTTAGTTTCCCTCTCAG | 59.741 | 47.826 | 0.00 | 0.00 | 0.00 | 3.35 |
17 | 18 | 3.239449 | TGTCAGCTTAGTTTCCCTCTCA | 58.761 | 45.455 | 0.00 | 0.00 | 0.00 | 3.27 |
18 | 19 | 3.963428 | TGTCAGCTTAGTTTCCCTCTC | 57.037 | 47.619 | 0.00 | 0.00 | 0.00 | 3.20 |
19 | 20 | 3.008485 | CCTTGTCAGCTTAGTTTCCCTCT | 59.992 | 47.826 | 0.00 | 0.00 | 0.00 | 3.69 |
20 | 21 | 3.244596 | ACCTTGTCAGCTTAGTTTCCCTC | 60.245 | 47.826 | 0.00 | 0.00 | 0.00 | 4.30 |
21 | 22 | 2.711547 | ACCTTGTCAGCTTAGTTTCCCT | 59.288 | 45.455 | 0.00 | 0.00 | 0.00 | 4.20 |
22 | 23 | 2.814336 | CACCTTGTCAGCTTAGTTTCCC | 59.186 | 50.000 | 0.00 | 0.00 | 0.00 | 3.97 |
23 | 24 | 3.477530 | ACACCTTGTCAGCTTAGTTTCC | 58.522 | 45.455 | 0.00 | 0.00 | 0.00 | 3.13 |
24 | 25 | 4.733972 | GACACCTTGTCAGCTTAGTTTC | 57.266 | 45.455 | 1.34 | 0.00 | 46.22 | 2.78 |
36 | 37 | 1.133915 | ACCGGTCAAATGACACCTTGT | 60.134 | 47.619 | 14.93 | 2.31 | 46.47 | 3.16 |
37 | 38 | 1.535462 | GACCGGTCAAATGACACCTTG | 59.465 | 52.381 | 29.75 | 1.76 | 46.47 | 3.61 |
38 | 39 | 1.142060 | TGACCGGTCAAATGACACCTT | 59.858 | 47.619 | 34.60 | 0.00 | 46.47 | 3.50 |
39 | 40 | 0.762418 | TGACCGGTCAAATGACACCT | 59.238 | 50.000 | 34.60 | 0.00 | 46.47 | 4.00 |
40 | 41 | 1.600023 | TTGACCGGTCAAATGACACC | 58.400 | 50.000 | 40.69 | 11.49 | 45.56 | 4.16 |
64 | 65 | 7.551262 | TGTCACACCATATAGCTTCGTATTTTT | 59.449 | 33.333 | 0.00 | 0.00 | 0.00 | 1.94 |
65 | 66 | 7.045416 | TGTCACACCATATAGCTTCGTATTTT | 58.955 | 34.615 | 0.00 | 0.00 | 0.00 | 1.82 |
66 | 67 | 6.578944 | TGTCACACCATATAGCTTCGTATTT | 58.421 | 36.000 | 0.00 | 0.00 | 0.00 | 1.40 |
67 | 68 | 6.156748 | TGTCACACCATATAGCTTCGTATT | 57.843 | 37.500 | 0.00 | 0.00 | 0.00 | 1.89 |
68 | 69 | 5.302059 | ACTGTCACACCATATAGCTTCGTAT | 59.698 | 40.000 | 0.00 | 0.00 | 0.00 | 3.06 |
69 | 70 | 4.643334 | ACTGTCACACCATATAGCTTCGTA | 59.357 | 41.667 | 0.00 | 0.00 | 0.00 | 3.43 |
70 | 71 | 3.447586 | ACTGTCACACCATATAGCTTCGT | 59.552 | 43.478 | 0.00 | 0.00 | 0.00 | 3.85 |
71 | 72 | 3.798878 | CACTGTCACACCATATAGCTTCG | 59.201 | 47.826 | 0.00 | 0.00 | 0.00 | 3.79 |
72 | 73 | 4.806247 | GTCACTGTCACACCATATAGCTTC | 59.194 | 45.833 | 0.00 | 0.00 | 0.00 | 3.86 |
73 | 74 | 4.383118 | GGTCACTGTCACACCATATAGCTT | 60.383 | 45.833 | 0.00 | 0.00 | 0.00 | 3.74 |
74 | 75 | 3.133003 | GGTCACTGTCACACCATATAGCT | 59.867 | 47.826 | 0.00 | 0.00 | 0.00 | 3.32 |
75 | 76 | 3.458189 | GGTCACTGTCACACCATATAGC | 58.542 | 50.000 | 0.00 | 0.00 | 0.00 | 2.97 |
76 | 77 | 3.130516 | ACGGTCACTGTCACACCATATAG | 59.869 | 47.826 | 0.00 | 0.00 | 0.00 | 1.31 |
77 | 78 | 3.093814 | ACGGTCACTGTCACACCATATA | 58.906 | 45.455 | 0.00 | 0.00 | 0.00 | 0.86 |
78 | 79 | 1.899814 | ACGGTCACTGTCACACCATAT | 59.100 | 47.619 | 0.00 | 0.00 | 0.00 | 1.78 |
79 | 80 | 1.334160 | ACGGTCACTGTCACACCATA | 58.666 | 50.000 | 0.00 | 0.00 | 0.00 | 2.74 |
80 | 81 | 1.334160 | TACGGTCACTGTCACACCAT | 58.666 | 50.000 | 0.00 | 0.00 | 0.00 | 3.55 |
81 | 82 | 1.334160 | ATACGGTCACTGTCACACCA | 58.666 | 50.000 | 0.00 | 0.00 | 0.00 | 4.17 |
82 | 83 | 3.581024 | TTATACGGTCACTGTCACACC | 57.419 | 47.619 | 0.00 | 0.00 | 0.00 | 4.16 |
83 | 84 | 4.561606 | GTGATTATACGGTCACTGTCACAC | 59.438 | 45.833 | 0.00 | 0.00 | 41.10 | 3.82 |
84 | 85 | 4.381185 | GGTGATTATACGGTCACTGTCACA | 60.381 | 45.833 | 0.00 | 0.00 | 43.23 | 3.58 |
85 | 86 | 4.110482 | GGTGATTATACGGTCACTGTCAC | 58.890 | 47.826 | 0.00 | 0.00 | 43.23 | 3.67 |
86 | 87 | 3.764972 | TGGTGATTATACGGTCACTGTCA | 59.235 | 43.478 | 0.00 | 0.00 | 43.23 | 3.58 |
87 | 88 | 4.380841 | TGGTGATTATACGGTCACTGTC | 57.619 | 45.455 | 0.00 | 0.00 | 43.23 | 3.51 |
88 | 89 | 6.127281 | TGTTATGGTGATTATACGGTCACTGT | 60.127 | 38.462 | 0.00 | 0.00 | 43.23 | 3.55 |
89 | 90 | 6.200286 | GTGTTATGGTGATTATACGGTCACTG | 59.800 | 42.308 | 10.30 | 0.00 | 43.23 | 3.66 |
90 | 91 | 6.278363 | GTGTTATGGTGATTATACGGTCACT | 58.722 | 40.000 | 10.30 | 0.00 | 43.23 | 3.41 |
91 | 92 | 5.174398 | CGTGTTATGGTGATTATACGGTCAC | 59.826 | 44.000 | 0.00 | 0.00 | 43.02 | 3.67 |
92 | 93 | 5.163530 | ACGTGTTATGGTGATTATACGGTCA | 60.164 | 40.000 | 0.00 | 0.00 | 34.90 | 4.02 |
93 | 94 | 5.284079 | ACGTGTTATGGTGATTATACGGTC | 58.716 | 41.667 | 0.00 | 0.00 | 34.90 | 4.79 |
94 | 95 | 5.266733 | ACGTGTTATGGTGATTATACGGT | 57.733 | 39.130 | 0.00 | 0.00 | 34.90 | 4.83 |
102 | 103 | 9.639601 | CAGTCATTATATACGTGTTATGGTGAT | 57.360 | 33.333 | 0.00 | 0.00 | 0.00 | 3.06 |
103 | 104 | 8.635328 | ACAGTCATTATATACGTGTTATGGTGA | 58.365 | 33.333 | 0.00 | 2.54 | 0.00 | 4.02 |
104 | 105 | 8.699749 | CACAGTCATTATATACGTGTTATGGTG | 58.300 | 37.037 | 0.00 | 0.32 | 0.00 | 4.17 |
105 | 106 | 8.418662 | ACACAGTCATTATATACGTGTTATGGT | 58.581 | 33.333 | 0.00 | 0.00 | 33.07 | 3.55 |
106 | 107 | 8.812147 | ACACAGTCATTATATACGTGTTATGG | 57.188 | 34.615 | 0.00 | 0.00 | 33.07 | 2.74 |
110 | 111 | 9.090692 | GGTTAACACAGTCATTATATACGTGTT | 57.909 | 33.333 | 8.10 | 9.61 | 41.50 | 3.32 |
111 | 112 | 7.433131 | CGGTTAACACAGTCATTATATACGTGT | 59.567 | 37.037 | 8.10 | 0.00 | 36.02 | 4.49 |
112 | 113 | 7.433131 | ACGGTTAACACAGTCATTATATACGTG | 59.567 | 37.037 | 8.10 | 0.00 | 0.00 | 4.49 |
113 | 114 | 7.483307 | ACGGTTAACACAGTCATTATATACGT | 58.517 | 34.615 | 8.10 | 0.00 | 0.00 | 3.57 |
114 | 115 | 7.919313 | ACGGTTAACACAGTCATTATATACG | 57.081 | 36.000 | 8.10 | 0.00 | 0.00 | 3.06 |
120 | 121 | 9.926158 | TTAAGAATACGGTTAACACAGTCATTA | 57.074 | 29.630 | 8.10 | 0.00 | 32.96 | 1.90 |
121 | 122 | 8.836268 | TTAAGAATACGGTTAACACAGTCATT | 57.164 | 30.769 | 8.10 | 5.58 | 32.96 | 2.57 |
122 | 123 | 8.092687 | ACTTAAGAATACGGTTAACACAGTCAT | 58.907 | 33.333 | 10.09 | 0.00 | 32.96 | 3.06 |
123 | 124 | 7.436118 | ACTTAAGAATACGGTTAACACAGTCA | 58.564 | 34.615 | 10.09 | 0.00 | 32.96 | 3.41 |
124 | 125 | 7.880059 | ACTTAAGAATACGGTTAACACAGTC | 57.120 | 36.000 | 10.09 | 0.69 | 32.96 | 3.51 |
125 | 126 | 8.359642 | TGTACTTAAGAATACGGTTAACACAGT | 58.640 | 33.333 | 10.09 | 6.87 | 35.30 | 3.55 |
126 | 127 | 8.746922 | TGTACTTAAGAATACGGTTAACACAG | 57.253 | 34.615 | 10.09 | 0.76 | 0.00 | 3.66 |
127 | 128 | 8.359642 | ACTGTACTTAAGAATACGGTTAACACA | 58.640 | 33.333 | 10.09 | 0.00 | 37.58 | 3.72 |
128 | 129 | 8.642020 | CACTGTACTTAAGAATACGGTTAACAC | 58.358 | 37.037 | 10.09 | 0.00 | 38.56 | 3.32 |
129 | 130 | 8.575589 | TCACTGTACTTAAGAATACGGTTAACA | 58.424 | 33.333 | 10.09 | 0.00 | 38.56 | 2.41 |
130 | 131 | 8.854312 | GTCACTGTACTTAAGAATACGGTTAAC | 58.146 | 37.037 | 10.09 | 9.67 | 38.56 | 2.01 |
131 | 132 | 8.028938 | GGTCACTGTACTTAAGAATACGGTTAA | 58.971 | 37.037 | 10.09 | 2.04 | 38.56 | 2.01 |
132 | 133 | 7.176515 | TGGTCACTGTACTTAAGAATACGGTTA | 59.823 | 37.037 | 10.09 | 2.61 | 38.56 | 2.85 |
133 | 134 | 6.015180 | TGGTCACTGTACTTAAGAATACGGTT | 60.015 | 38.462 | 10.09 | 0.00 | 38.56 | 4.44 |
134 | 135 | 5.477984 | TGGTCACTGTACTTAAGAATACGGT | 59.522 | 40.000 | 10.09 | 10.33 | 40.74 | 4.83 |
135 | 136 | 5.957798 | TGGTCACTGTACTTAAGAATACGG | 58.042 | 41.667 | 10.09 | 9.70 | 34.41 | 4.02 |
136 | 137 | 7.597743 | ACTTTGGTCACTGTACTTAAGAATACG | 59.402 | 37.037 | 10.09 | 2.31 | 0.00 | 3.06 |
137 | 138 | 8.709646 | CACTTTGGTCACTGTACTTAAGAATAC | 58.290 | 37.037 | 10.09 | 2.89 | 0.00 | 1.89 |
138 | 139 | 8.644216 | TCACTTTGGTCACTGTACTTAAGAATA | 58.356 | 33.333 | 10.09 | 0.00 | 0.00 | 1.75 |
139 | 140 | 7.506114 | TCACTTTGGTCACTGTACTTAAGAAT | 58.494 | 34.615 | 10.09 | 0.00 | 0.00 | 2.40 |
140 | 141 | 6.880484 | TCACTTTGGTCACTGTACTTAAGAA | 58.120 | 36.000 | 10.09 | 0.00 | 0.00 | 2.52 |
141 | 142 | 6.474140 | TCACTTTGGTCACTGTACTTAAGA | 57.526 | 37.500 | 10.09 | 0.00 | 0.00 | 2.10 |
142 | 143 | 6.292168 | CGTTCACTTTGGTCACTGTACTTAAG | 60.292 | 42.308 | 0.00 | 0.00 | 0.00 | 1.85 |
143 | 144 | 5.521010 | CGTTCACTTTGGTCACTGTACTTAA | 59.479 | 40.000 | 0.00 | 0.00 | 0.00 | 1.85 |
144 | 145 | 5.045215 | CGTTCACTTTGGTCACTGTACTTA | 58.955 | 41.667 | 0.00 | 0.00 | 0.00 | 2.24 |
145 | 146 | 3.869246 | CGTTCACTTTGGTCACTGTACTT | 59.131 | 43.478 | 0.00 | 0.00 | 0.00 | 2.24 |
146 | 147 | 3.118884 | ACGTTCACTTTGGTCACTGTACT | 60.119 | 43.478 | 0.00 | 0.00 | 0.00 | 2.73 |
147 | 148 | 3.192466 | ACGTTCACTTTGGTCACTGTAC | 58.808 | 45.455 | 0.00 | 0.00 | 0.00 | 2.90 |
148 | 149 | 3.530265 | ACGTTCACTTTGGTCACTGTA | 57.470 | 42.857 | 0.00 | 0.00 | 0.00 | 2.74 |
149 | 150 | 2.396590 | ACGTTCACTTTGGTCACTGT | 57.603 | 45.000 | 0.00 | 0.00 | 0.00 | 3.55 |
150 | 151 | 3.191669 | TGTACGTTCACTTTGGTCACTG | 58.808 | 45.455 | 0.00 | 0.00 | 0.00 | 3.66 |
151 | 152 | 3.530265 | TGTACGTTCACTTTGGTCACT | 57.470 | 42.857 | 0.00 | 0.00 | 0.00 | 3.41 |
152 | 153 | 3.805422 | TCATGTACGTTCACTTTGGTCAC | 59.195 | 43.478 | 0.00 | 0.00 | 0.00 | 3.67 |
153 | 154 | 3.805422 | GTCATGTACGTTCACTTTGGTCA | 59.195 | 43.478 | 0.00 | 0.00 | 0.00 | 4.02 |
154 | 155 | 3.805422 | TGTCATGTACGTTCACTTTGGTC | 59.195 | 43.478 | 0.00 | 0.00 | 0.00 | 4.02 |
155 | 156 | 3.799366 | TGTCATGTACGTTCACTTTGGT | 58.201 | 40.909 | 0.00 | 0.00 | 0.00 | 3.67 |
156 | 157 | 4.272504 | ACTTGTCATGTACGTTCACTTTGG | 59.727 | 41.667 | 0.00 | 0.00 | 0.00 | 3.28 |
157 | 158 | 5.403897 | ACTTGTCATGTACGTTCACTTTG | 57.596 | 39.130 | 0.00 | 0.00 | 0.00 | 2.77 |
158 | 159 | 5.583061 | TGAACTTGTCATGTACGTTCACTTT | 59.417 | 36.000 | 15.34 | 0.00 | 39.03 | 2.66 |
159 | 160 | 5.113383 | TGAACTTGTCATGTACGTTCACTT | 58.887 | 37.500 | 15.34 | 0.00 | 39.03 | 3.16 |
160 | 161 | 4.689071 | TGAACTTGTCATGTACGTTCACT | 58.311 | 39.130 | 15.34 | 0.00 | 39.03 | 3.41 |
161 | 162 | 4.506654 | ACTGAACTTGTCATGTACGTTCAC | 59.493 | 41.667 | 15.34 | 0.00 | 39.03 | 3.18 |
162 | 163 | 4.506288 | CACTGAACTTGTCATGTACGTTCA | 59.494 | 41.667 | 17.06 | 17.06 | 40.91 | 3.18 |
163 | 164 | 4.743151 | TCACTGAACTTGTCATGTACGTTC | 59.257 | 41.667 | 0.00 | 11.98 | 35.07 | 3.95 |
164 | 165 | 4.506654 | GTCACTGAACTTGTCATGTACGTT | 59.493 | 41.667 | 0.00 | 0.00 | 35.07 | 3.99 |
165 | 166 | 4.049186 | GTCACTGAACTTGTCATGTACGT | 58.951 | 43.478 | 0.00 | 0.00 | 35.07 | 3.57 |
166 | 167 | 3.428870 | GGTCACTGAACTTGTCATGTACG | 59.571 | 47.826 | 0.00 | 0.00 | 35.07 | 3.67 |
167 | 168 | 4.377021 | TGGTCACTGAACTTGTCATGTAC | 58.623 | 43.478 | 0.00 | 0.00 | 35.07 | 2.90 |
168 | 169 | 4.681074 | TGGTCACTGAACTTGTCATGTA | 57.319 | 40.909 | 0.00 | 0.00 | 35.07 | 2.29 |
169 | 170 | 3.558931 | TGGTCACTGAACTTGTCATGT | 57.441 | 42.857 | 0.00 | 0.00 | 35.07 | 3.21 |
170 | 171 | 4.067192 | TGATGGTCACTGAACTTGTCATG | 58.933 | 43.478 | 0.00 | 0.00 | 35.07 | 3.07 |
171 | 172 | 4.356405 | TGATGGTCACTGAACTTGTCAT | 57.644 | 40.909 | 0.00 | 0.00 | 35.07 | 3.06 |
172 | 173 | 3.836365 | TGATGGTCACTGAACTTGTCA | 57.164 | 42.857 | 0.00 | 0.00 | 34.17 | 3.58 |
173 | 174 | 4.516698 | ACATTGATGGTCACTGAACTTGTC | 59.483 | 41.667 | 4.59 | 0.00 | 32.25 | 3.18 |
174 | 175 | 4.464008 | ACATTGATGGTCACTGAACTTGT | 58.536 | 39.130 | 4.59 | 0.00 | 32.25 | 3.16 |
175 | 176 | 6.748333 | ATACATTGATGGTCACTGAACTTG | 57.252 | 37.500 | 4.59 | 0.00 | 32.25 | 3.16 |
176 | 177 | 7.765695 | AAATACATTGATGGTCACTGAACTT | 57.234 | 32.000 | 4.59 | 0.00 | 32.25 | 2.66 |
177 | 178 | 7.765695 | AAAATACATTGATGGTCACTGAACT | 57.234 | 32.000 | 4.59 | 0.00 | 32.25 | 3.01 |
178 | 179 | 8.730680 | AGTAAAATACATTGATGGTCACTGAAC | 58.269 | 33.333 | 4.59 | 0.00 | 32.25 | 3.18 |
179 | 180 | 8.862325 | AGTAAAATACATTGATGGTCACTGAA | 57.138 | 30.769 | 4.59 | 0.00 | 32.25 | 3.02 |
180 | 181 | 8.100164 | TGAGTAAAATACATTGATGGTCACTGA | 58.900 | 33.333 | 4.59 | 0.00 | 32.25 | 3.41 |
181 | 182 | 8.267620 | TGAGTAAAATACATTGATGGTCACTG | 57.732 | 34.615 | 0.00 | 0.00 | 33.82 | 3.66 |
182 | 183 | 8.862325 | TTGAGTAAAATACATTGATGGTCACT | 57.138 | 30.769 | 0.00 | 0.00 | 0.00 | 3.41 |
183 | 184 | 9.906660 | TTTTGAGTAAAATACATTGATGGTCAC | 57.093 | 29.630 | 0.00 | 0.00 | 31.13 | 3.67 |
193 | 194 | 9.840427 | CGGATTTGTCTTTTGAGTAAAATACAT | 57.160 | 29.630 | 0.00 | 0.00 | 40.37 | 2.29 |
194 | 195 | 8.293867 | CCGGATTTGTCTTTTGAGTAAAATACA | 58.706 | 33.333 | 0.00 | 0.00 | 39.56 | 2.29 |
195 | 196 | 8.508875 | TCCGGATTTGTCTTTTGAGTAAAATAC | 58.491 | 33.333 | 0.00 | 0.00 | 35.39 | 1.89 |
196 | 197 | 8.508875 | GTCCGGATTTGTCTTTTGAGTAAAATA | 58.491 | 33.333 | 7.81 | 0.00 | 35.39 | 1.40 |
197 | 198 | 7.368059 | GTCCGGATTTGTCTTTTGAGTAAAAT | 58.632 | 34.615 | 7.81 | 0.00 | 35.39 | 1.82 |
198 | 199 | 6.512091 | CGTCCGGATTTGTCTTTTGAGTAAAA | 60.512 | 38.462 | 7.81 | 0.00 | 34.75 | 1.52 |
199 | 200 | 5.049954 | CGTCCGGATTTGTCTTTTGAGTAAA | 60.050 | 40.000 | 7.81 | 0.00 | 0.00 | 2.01 |
200 | 201 | 4.449743 | CGTCCGGATTTGTCTTTTGAGTAA | 59.550 | 41.667 | 7.81 | 0.00 | 0.00 | 2.24 |
201 | 202 | 3.991773 | CGTCCGGATTTGTCTTTTGAGTA | 59.008 | 43.478 | 7.81 | 0.00 | 0.00 | 2.59 |
202 | 203 | 2.806244 | CGTCCGGATTTGTCTTTTGAGT | 59.194 | 45.455 | 7.81 | 0.00 | 0.00 | 3.41 |
203 | 204 | 2.806244 | ACGTCCGGATTTGTCTTTTGAG | 59.194 | 45.455 | 7.81 | 0.00 | 0.00 | 3.02 |
204 | 205 | 2.546368 | CACGTCCGGATTTGTCTTTTGA | 59.454 | 45.455 | 7.81 | 0.00 | 0.00 | 2.69 |
205 | 206 | 2.289547 | ACACGTCCGGATTTGTCTTTTG | 59.710 | 45.455 | 7.81 | 0.00 | 0.00 | 2.44 |
206 | 207 | 2.546789 | GACACGTCCGGATTTGTCTTTT | 59.453 | 45.455 | 28.53 | 7.74 | 36.29 | 2.27 |
207 | 208 | 2.140717 | GACACGTCCGGATTTGTCTTT | 58.859 | 47.619 | 28.53 | 8.04 | 36.29 | 2.52 |
208 | 209 | 1.343465 | AGACACGTCCGGATTTGTCTT | 59.657 | 47.619 | 31.07 | 20.86 | 45.06 | 3.01 |
209 | 210 | 0.966920 | AGACACGTCCGGATTTGTCT | 59.033 | 50.000 | 31.07 | 31.07 | 43.08 | 3.41 |
210 | 211 | 1.347320 | GAGACACGTCCGGATTTGTC | 58.653 | 55.000 | 28.58 | 28.58 | 38.95 | 3.18 |
211 | 212 | 0.037605 | GGAGACACGTCCGGATTTGT | 60.038 | 55.000 | 18.18 | 18.18 | 0.00 | 2.83 |
212 | 213 | 2.750815 | GGAGACACGTCCGGATTTG | 58.249 | 57.895 | 7.81 | 10.81 | 0.00 | 2.32 |
219 | 220 | 1.068474 | CAACATTCGGAGACACGTCC | 58.932 | 55.000 | 0.00 | 0.00 | 34.32 | 4.79 |
220 | 221 | 1.068474 | CCAACATTCGGAGACACGTC | 58.932 | 55.000 | 0.00 | 0.00 | 34.32 | 4.34 |
221 | 222 | 0.391597 | ACCAACATTCGGAGACACGT | 59.608 | 50.000 | 0.00 | 0.00 | 34.32 | 4.49 |
222 | 223 | 1.508632 | AACCAACATTCGGAGACACG | 58.491 | 50.000 | 0.00 | 0.00 | 34.32 | 4.49 |
223 | 224 | 3.000727 | CCTAACCAACATTCGGAGACAC | 58.999 | 50.000 | 0.00 | 0.00 | 34.32 | 3.67 |
224 | 225 | 2.901192 | TCCTAACCAACATTCGGAGACA | 59.099 | 45.455 | 0.00 | 0.00 | 34.32 | 3.41 |
225 | 226 | 3.604875 | TCCTAACCAACATTCGGAGAC | 57.395 | 47.619 | 0.00 | 0.00 | 34.32 | 3.36 |
226 | 227 | 4.627284 | TTTCCTAACCAACATTCGGAGA | 57.373 | 40.909 | 0.00 | 0.00 | 0.00 | 3.71 |
227 | 228 | 5.648092 | AGAATTTCCTAACCAACATTCGGAG | 59.352 | 40.000 | 0.00 | 0.00 | 0.00 | 4.63 |
228 | 229 | 5.566469 | AGAATTTCCTAACCAACATTCGGA | 58.434 | 37.500 | 0.00 | 0.00 | 0.00 | 4.55 |
229 | 230 | 5.897377 | AGAATTTCCTAACCAACATTCGG | 57.103 | 39.130 | 0.00 | 0.00 | 0.00 | 4.30 |
230 | 231 | 6.908825 | TGAAGAATTTCCTAACCAACATTCG | 58.091 | 36.000 | 0.00 | 0.00 | 32.09 | 3.34 |
231 | 232 | 6.808704 | GCTGAAGAATTTCCTAACCAACATTC | 59.191 | 38.462 | 0.00 | 0.00 | 32.09 | 2.67 |
232 | 233 | 6.267471 | TGCTGAAGAATTTCCTAACCAACATT | 59.733 | 34.615 | 0.00 | 0.00 | 32.09 | 2.71 |
233 | 234 | 5.774690 | TGCTGAAGAATTTCCTAACCAACAT | 59.225 | 36.000 | 0.00 | 0.00 | 32.09 | 2.71 |
234 | 235 | 5.009610 | GTGCTGAAGAATTTCCTAACCAACA | 59.990 | 40.000 | 0.00 | 0.00 | 32.09 | 3.33 |
235 | 236 | 5.241728 | AGTGCTGAAGAATTTCCTAACCAAC | 59.758 | 40.000 | 0.00 | 0.00 | 32.09 | 3.77 |
236 | 237 | 5.241506 | CAGTGCTGAAGAATTTCCTAACCAA | 59.758 | 40.000 | 0.00 | 0.00 | 32.09 | 3.67 |
237 | 238 | 4.761739 | CAGTGCTGAAGAATTTCCTAACCA | 59.238 | 41.667 | 0.00 | 0.00 | 32.09 | 3.67 |
238 | 239 | 5.003804 | TCAGTGCTGAAGAATTTCCTAACC | 58.996 | 41.667 | 0.00 | 0.00 | 36.53 | 2.85 |
239 | 240 | 6.560253 | TTCAGTGCTGAAGAATTTCCTAAC | 57.440 | 37.500 | 10.26 | 0.00 | 43.90 | 2.34 |
508 | 512 | 2.158885 | TCAACCCGAAGACACATGAACA | 60.159 | 45.455 | 0.00 | 0.00 | 0.00 | 3.18 |
513 | 517 | 2.305927 | AGGATTCAACCCGAAGACACAT | 59.694 | 45.455 | 0.00 | 0.00 | 36.95 | 3.21 |
613 | 617 | 4.139786 | ACTTGTTGTAGTAGACAGTCGGA | 58.860 | 43.478 | 0.00 | 0.00 | 39.88 | 4.55 |
696 | 700 | 2.159282 | CCACCTAGCGACGACTACAAAT | 60.159 | 50.000 | 0.00 | 0.00 | 0.00 | 2.32 |
697 | 701 | 1.200716 | CCACCTAGCGACGACTACAAA | 59.799 | 52.381 | 0.00 | 0.00 | 0.00 | 2.83 |
747 | 751 | 4.923893 | TCATGGTAGTATAACGAACACCG | 58.076 | 43.478 | 0.00 | 0.00 | 45.44 | 4.94 |
809 | 814 | 3.904234 | GTGAAATAAAAACCGACGCTGTC | 59.096 | 43.478 | 0.00 | 0.00 | 0.00 | 3.51 |
811 | 816 | 4.084013 | AGAGTGAAATAAAAACCGACGCTG | 60.084 | 41.667 | 0.00 | 0.00 | 0.00 | 5.18 |
960 | 967 | 1.411493 | GAGGGCTCGTTTCGCTTACG | 61.411 | 60.000 | 0.00 | 0.00 | 40.23 | 3.18 |
961 | 968 | 1.411493 | CGAGGGCTCGTTTCGCTTAC | 61.411 | 60.000 | 0.00 | 0.00 | 46.99 | 2.34 |
962 | 969 | 1.153901 | CGAGGGCTCGTTTCGCTTA | 60.154 | 57.895 | 0.00 | 0.00 | 46.99 | 3.09 |
1598 | 1617 | 5.570234 | TTGTAGTGTGGAAAACTGGAAAC | 57.430 | 39.130 | 0.00 | 0.00 | 33.41 | 2.78 |
1627 | 1646 | 4.021016 | CAGCTTTGTTAGACAGACCCTAGT | 60.021 | 45.833 | 0.00 | 0.00 | 0.00 | 2.57 |
1672 | 1699 | 1.067071 | ACTAGCCGGTAAGCTCAACAC | 60.067 | 52.381 | 1.90 | 0.00 | 43.67 | 3.32 |
1729 | 1757 | 4.978083 | AATGCAAATGCTCTAGTTCCAG | 57.022 | 40.909 | 6.97 | 0.00 | 42.66 | 3.86 |
1777 | 1805 | 3.137176 | CCCCCATCTCATTCATACACAGT | 59.863 | 47.826 | 0.00 | 0.00 | 0.00 | 3.55 |
1845 | 1954 | 4.700213 | CCACCAAGATTGACCGAAGTAAAT | 59.300 | 41.667 | 0.00 | 0.00 | 28.78 | 1.40 |
1853 | 1962 | 3.081061 | TCAAATCCACCAAGATTGACCG | 58.919 | 45.455 | 0.00 | 0.00 | 36.59 | 4.79 |
1947 | 2056 | 5.104610 | ACTTTCTCCACTCATAGTGCATCAT | 60.105 | 40.000 | 1.43 | 0.00 | 44.63 | 2.45 |
2087 | 2198 | 6.969473 | GCTCATACTAAGAAAATTTGGCTCAC | 59.031 | 38.462 | 0.00 | 0.00 | 0.00 | 3.51 |
2178 | 2289 | 8.801715 | AGAAGCACACAAAAATACACTATTTG | 57.198 | 30.769 | 0.00 | 0.00 | 38.32 | 2.32 |
2189 | 2300 | 5.050227 | GCATTGCAATAGAAGCACACAAAAA | 60.050 | 36.000 | 12.53 | 0.00 | 42.54 | 1.94 |
2194 | 2305 | 3.176708 | CTGCATTGCAATAGAAGCACAC | 58.823 | 45.455 | 12.53 | 0.00 | 42.54 | 3.82 |
2312 | 2424 | 5.301298 | GCTCTGGAATAAGCTGATTTGGATT | 59.699 | 40.000 | 0.00 | 0.00 | 35.60 | 3.01 |
2350 | 2462 | 5.011090 | TCTCAATCGTAGAACCAGGATTG | 57.989 | 43.478 | 10.67 | 10.67 | 45.54 | 2.67 |
2439 | 2551 | 0.251922 | AGGGCCAACTGAATGCATGT | 60.252 | 50.000 | 6.18 | 0.00 | 0.00 | 3.21 |
2495 | 2607 | 2.033801 | CCTGATGGCGGTCATGATTTTC | 59.966 | 50.000 | 0.00 | 0.00 | 35.97 | 2.29 |
2535 | 2647 | 5.086058 | CAGTTCTGCAATTTATACGCGTTT | 58.914 | 37.500 | 20.78 | 13.35 | 0.00 | 3.60 |
2655 | 2767 | 4.818546 | GTGCCTTCTCTGTACATATTGCAT | 59.181 | 41.667 | 0.00 | 0.00 | 0.00 | 3.96 |
2979 | 3091 | 0.689080 | TTGCTTGGGGGTTCTGCAAA | 60.689 | 50.000 | 0.00 | 0.00 | 40.10 | 3.68 |
3033 | 3145 | 1.339055 | TGCTGCGCCTAAGTTGAAGAT | 60.339 | 47.619 | 4.18 | 0.00 | 0.00 | 2.40 |
3079 | 3191 | 4.020218 | TGAACAGGTTCTTGGTCTATGGAG | 60.020 | 45.833 | 12.86 | 0.00 | 40.14 | 3.86 |
3312 | 3424 | 4.944317 | GGGATGGACTAGGCTTTATATTGC | 59.056 | 45.833 | 0.00 | 0.00 | 0.00 | 3.56 |
3340 | 3452 | 2.426024 | GCTTGGTTCATGCATCTCACAT | 59.574 | 45.455 | 0.00 | 0.00 | 35.13 | 3.21 |
3425 | 3537 | 2.257353 | GTGCAAACTGCTCGGGATT | 58.743 | 52.632 | 0.00 | 0.00 | 45.31 | 3.01 |
3513 | 3625 | 0.921896 | ATAGCTTGCCTGGGACATGT | 59.078 | 50.000 | 0.00 | 0.00 | 38.20 | 3.21 |
3763 | 3876 | 4.652822 | AGAAGGTAACATTGAGTTCACCC | 58.347 | 43.478 | 0.00 | 0.00 | 41.64 | 4.61 |
3840 | 4145 | 2.487934 | CTTCGATGTGATGGATCCACC | 58.512 | 52.381 | 18.99 | 8.28 | 39.54 | 4.61 |
3880 | 4185 | 5.432885 | AAGAACAATGTTTAACGTCCCAG | 57.567 | 39.130 | 0.00 | 0.00 | 0.00 | 4.45 |
3908 | 4213 | 3.244215 | ACAGATCAAACACGTCCTGACAT | 60.244 | 43.478 | 0.00 | 0.00 | 0.00 | 3.06 |
3909 | 4214 | 2.102420 | ACAGATCAAACACGTCCTGACA | 59.898 | 45.455 | 0.00 | 0.00 | 0.00 | 3.58 |
3910 | 4215 | 2.755650 | ACAGATCAAACACGTCCTGAC | 58.244 | 47.619 | 0.00 | 0.00 | 0.00 | 3.51 |
3911 | 4216 | 3.130633 | CAACAGATCAAACACGTCCTGA | 58.869 | 45.455 | 0.00 | 0.00 | 0.00 | 3.86 |
3912 | 4217 | 2.872245 | ACAACAGATCAAACACGTCCTG | 59.128 | 45.455 | 0.00 | 0.00 | 0.00 | 3.86 |
3913 | 4218 | 3.194005 | ACAACAGATCAAACACGTCCT | 57.806 | 42.857 | 0.00 | 0.00 | 0.00 | 3.85 |
3914 | 4219 | 3.311322 | TCAACAACAGATCAAACACGTCC | 59.689 | 43.478 | 0.00 | 0.00 | 0.00 | 4.79 |
3916 | 4221 | 4.188462 | TCTCAACAACAGATCAAACACGT | 58.812 | 39.130 | 0.00 | 0.00 | 0.00 | 4.49 |
3917 | 4222 | 4.319046 | CCTCTCAACAACAGATCAAACACG | 60.319 | 45.833 | 0.00 | 0.00 | 0.00 | 4.49 |
3969 | 4365 | 9.419297 | GGAAATTAAACTGGGTTCAGATAAAAC | 57.581 | 33.333 | 0.00 | 0.00 | 43.49 | 2.43 |
4027 | 4423 | 7.833682 | AGTACATGTTCATGGTCCAAAATATCA | 59.166 | 33.333 | 2.30 | 0.00 | 0.00 | 2.15 |
4035 | 4431 | 4.759693 | GTGAAAGTACATGTTCATGGTCCA | 59.240 | 41.667 | 2.30 | 0.00 | 36.23 | 4.02 |
4036 | 4432 | 4.142902 | CGTGAAAGTACATGTTCATGGTCC | 60.143 | 45.833 | 2.30 | 4.68 | 37.19 | 4.46 |
4082 | 4478 | 7.363793 | CCTTGTTATGCAGCTTAATTTTAGGGT | 60.364 | 37.037 | 4.17 | 0.00 | 0.00 | 4.34 |
4163 | 4559 | 4.160329 | ACTCTGATCCTCCAACACAACTA | 58.840 | 43.478 | 0.00 | 0.00 | 0.00 | 2.24 |
4308 | 4704 | 8.840867 | CATCACTTTTCTTTTAAGATGCGTTAC | 58.159 | 33.333 | 0.00 | 0.00 | 34.49 | 2.50 |
4516 | 4917 | 0.034670 | GAGCCTGGCTGGAGTTGAAT | 60.035 | 55.000 | 28.82 | 0.00 | 39.88 | 2.57 |
4542 | 4943 | 8.773645 | CAAAATGTATCCTGTTGCGATATAAGA | 58.226 | 33.333 | 0.00 | 0.00 | 0.00 | 2.10 |
4554 | 4957 | 7.287696 | AGTCCAAGAAAACAAAATGTATCCTGT | 59.712 | 33.333 | 0.00 | 0.00 | 0.00 | 4.00 |
4636 | 5039 | 8.762645 | ACTTCTCACATGATACCTAATTTGAGA | 58.237 | 33.333 | 0.00 | 0.09 | 37.15 | 3.27 |
4637 | 5040 | 8.954950 | ACTTCTCACATGATACCTAATTTGAG | 57.045 | 34.615 | 0.00 | 0.00 | 0.00 | 3.02 |
4797 | 5204 | 8.724229 | GCAGTATCTGAATTGTATGCATGATTA | 58.276 | 33.333 | 10.16 | 0.00 | 32.44 | 1.75 |
4798 | 5205 | 7.447545 | AGCAGTATCTGAATTGTATGCATGATT | 59.552 | 33.333 | 10.16 | 6.96 | 34.93 | 2.57 |
4822 | 5229 | 5.754778 | ACGAACAACCAAAATAACTGTAGC | 58.245 | 37.500 | 0.00 | 0.00 | 0.00 | 3.58 |
5075 | 5482 | 7.703058 | ATATTCTTGTTTTTCTCCGGAACAT | 57.297 | 32.000 | 5.23 | 0.00 | 33.73 | 2.71 |
5295 | 5704 | 3.465871 | GTTCCTCTTCCATCTCATGAGC | 58.534 | 50.000 | 18.36 | 0.00 | 0.00 | 4.26 |
5305 | 5714 | 1.302511 | GCAAGGCGTTCCTCTTCCA | 60.303 | 57.895 | 0.00 | 0.00 | 43.40 | 3.53 |
5407 | 5816 | 6.908825 | TCAGCCACACACAAAAGTATAATTC | 58.091 | 36.000 | 0.00 | 0.00 | 0.00 | 2.17 |
5408 | 5817 | 6.570378 | GCTCAGCCACACACAAAAGTATAATT | 60.570 | 38.462 | 0.00 | 0.00 | 0.00 | 1.40 |
5419 | 5830 | 0.109153 | ATCAAGCTCAGCCACACACA | 59.891 | 50.000 | 0.00 | 0.00 | 0.00 | 3.72 |
5600 | 6011 | 1.088306 | AACGACCGTGAAAGCAACAA | 58.912 | 45.000 | 0.00 | 0.00 | 0.00 | 2.83 |
5611 | 6022 | 4.094294 | CACAATAAATCCATCAACGACCGT | 59.906 | 41.667 | 0.00 | 0.00 | 0.00 | 4.83 |
5614 | 6025 | 9.567848 | AATTAACACAATAAATCCATCAACGAC | 57.432 | 29.630 | 0.00 | 0.00 | 0.00 | 4.34 |
5694 | 6107 | 7.275183 | TCTTGGGTGTATGAGTCATTATGAAG | 58.725 | 38.462 | 11.68 | 6.89 | 0.00 | 3.02 |
6166 | 6579 | 0.613777 | GGAGGAAACGATGGTCCACT | 59.386 | 55.000 | 0.00 | 0.00 | 36.28 | 4.00 |
6230 | 6643 | 1.527034 | TGTTCTGCAATGAGCCAGTC | 58.473 | 50.000 | 0.00 | 0.00 | 44.83 | 3.51 |
6231 | 6644 | 2.211250 | ATGTTCTGCAATGAGCCAGT | 57.789 | 45.000 | 0.00 | 0.00 | 44.83 | 4.00 |
6232 | 6645 | 4.818005 | TGTATATGTTCTGCAATGAGCCAG | 59.182 | 41.667 | 0.00 | 0.00 | 44.83 | 4.85 |
6233 | 6646 | 4.779696 | TGTATATGTTCTGCAATGAGCCA | 58.220 | 39.130 | 0.00 | 0.00 | 44.83 | 4.75 |
6263 | 6676 | 3.555956 | CAGAACGGTGATACAGGTTATGC | 59.444 | 47.826 | 0.00 | 0.00 | 0.00 | 3.14 |
6323 | 6736 | 2.281900 | AGCGCTTGGCCCGTTTTA | 60.282 | 55.556 | 2.64 | 0.00 | 45.17 | 1.52 |
6354 | 6767 | 3.744660 | GTCAGGGGACATCAACATATCC | 58.255 | 50.000 | 0.00 | 0.00 | 43.73 | 2.59 |
6439 | 6852 | 9.613428 | ATTTCTTAGATCCGTTGACATAATCAA | 57.387 | 29.630 | 0.00 | 0.00 | 45.39 | 2.57 |
6440 | 6853 | 9.045223 | CATTTCTTAGATCCGTTGACATAATCA | 57.955 | 33.333 | 0.00 | 0.00 | 34.65 | 2.57 |
6441 | 6854 | 9.261180 | TCATTTCTTAGATCCGTTGACATAATC | 57.739 | 33.333 | 0.00 | 0.00 | 0.00 | 1.75 |
6442 | 6855 | 9.613428 | TTCATTTCTTAGATCCGTTGACATAAT | 57.387 | 29.630 | 0.00 | 0.00 | 0.00 | 1.28 |
6443 | 6856 | 9.613428 | ATTCATTTCTTAGATCCGTTGACATAA | 57.387 | 29.630 | 0.00 | 0.00 | 0.00 | 1.90 |
6444 | 6857 | 9.045223 | CATTCATTTCTTAGATCCGTTGACATA | 57.955 | 33.333 | 0.00 | 0.00 | 0.00 | 2.29 |
6485 | 6898 | 3.631686 | ACACATGAACAAGCAGCTAAACA | 59.368 | 39.130 | 0.00 | 0.00 | 0.00 | 2.83 |
6517 | 6930 | 2.549754 | CAGTAAGTCAGCAACCAACAGG | 59.450 | 50.000 | 0.00 | 0.00 | 0.00 | 4.00 |
6523 | 6936 | 4.814771 | ACAGTTTACAGTAAGTCAGCAACC | 59.185 | 41.667 | 0.00 | 0.00 | 0.00 | 3.77 |
6535 | 6948 | 4.497291 | TCCAAGGTCAACAGTTTACAGT | 57.503 | 40.909 | 0.12 | 0.00 | 0.00 | 3.55 |
6611 | 7217 | 9.176181 | CGCACAAAGTACACAAATAAATAAAGT | 57.824 | 29.630 | 0.00 | 0.00 | 0.00 | 2.66 |
6612 | 7218 | 9.176181 | ACGCACAAAGTACACAAATAAATAAAG | 57.824 | 29.630 | 0.00 | 0.00 | 0.00 | 1.85 |
6613 | 7219 | 9.171701 | GACGCACAAAGTACACAAATAAATAAA | 57.828 | 29.630 | 0.00 | 0.00 | 0.00 | 1.40 |
6614 | 7220 | 8.343366 | TGACGCACAAAGTACACAAATAAATAA | 58.657 | 29.630 | 0.00 | 0.00 | 0.00 | 1.40 |
6615 | 7221 | 7.862648 | TGACGCACAAAGTACACAAATAAATA | 58.137 | 30.769 | 0.00 | 0.00 | 0.00 | 1.40 |
6616 | 7222 | 6.730175 | TGACGCACAAAGTACACAAATAAAT | 58.270 | 32.000 | 0.00 | 0.00 | 0.00 | 1.40 |
6617 | 7223 | 6.120378 | TGACGCACAAAGTACACAAATAAA | 57.880 | 33.333 | 0.00 | 0.00 | 0.00 | 1.40 |
6618 | 7224 | 5.736486 | TGACGCACAAAGTACACAAATAA | 57.264 | 34.783 | 0.00 | 0.00 | 0.00 | 1.40 |
6619 | 7225 | 5.699001 | AGATGACGCACAAAGTACACAAATA | 59.301 | 36.000 | 0.00 | 0.00 | 0.00 | 1.40 |
6620 | 7226 | 4.515191 | AGATGACGCACAAAGTACACAAAT | 59.485 | 37.500 | 0.00 | 0.00 | 0.00 | 2.32 |
6621 | 7227 | 3.874543 | AGATGACGCACAAAGTACACAAA | 59.125 | 39.130 | 0.00 | 0.00 | 0.00 | 2.83 |
6622 | 7228 | 3.247411 | CAGATGACGCACAAAGTACACAA | 59.753 | 43.478 | 0.00 | 0.00 | 0.00 | 3.33 |
6623 | 7229 | 2.799978 | CAGATGACGCACAAAGTACACA | 59.200 | 45.455 | 0.00 | 0.00 | 0.00 | 3.72 |
6652 | 7258 | 4.085357 | AGATCCACAGTAACAAGCAACA | 57.915 | 40.909 | 0.00 | 0.00 | 0.00 | 3.33 |
6659 | 7265 | 5.592282 | TCAAAAGCAAAGATCCACAGTAACA | 59.408 | 36.000 | 0.00 | 0.00 | 0.00 | 2.41 |
6694 | 7300 | 4.386230 | CGTTTTGAGAATAACGTGAGCAG | 58.614 | 43.478 | 0.00 | 0.00 | 0.00 | 4.24 |
6703 | 7309 | 7.095940 | CGTTTACTGTCTCCGTTTTGAGAATAA | 60.096 | 37.037 | 0.00 | 0.00 | 42.75 | 1.40 |
6793 | 7665 | 9.357161 | ACATTGTACACTTCTTATGGGTTTTAA | 57.643 | 29.630 | 0.00 | 0.00 | 0.00 | 1.52 |
6877 | 7749 | 8.793592 | CCTAACTTTCAACCAAGCTATAACTTT | 58.206 | 33.333 | 0.00 | 0.00 | 0.00 | 2.66 |
6914 | 7786 | 1.473677 | TGCATGTCAACAATGCTAGCC | 59.526 | 47.619 | 13.29 | 0.00 | 41.52 | 3.93 |
6924 | 7796 | 0.523072 | ATGACCGCTTGCATGTCAAC | 59.477 | 50.000 | 15.46 | 0.00 | 41.85 | 3.18 |
7176 | 8217 | 9.057089 | AGAGAAGAAATAAAAAGAAGAAAGCGA | 57.943 | 29.630 | 0.00 | 0.00 | 0.00 | 4.93 |
7229 | 8275 | 3.557475 | CCCAATTGTCCAAACACATGCAT | 60.557 | 43.478 | 4.43 | 0.00 | 34.35 | 3.96 |
7249 | 8295 | 1.680338 | ACAAGCAGTTGTGTTCTCCC | 58.320 | 50.000 | 0.00 | 0.00 | 45.58 | 4.30 |
7250 | 8296 | 5.348997 | GTCTATACAAGCAGTTGTGTTCTCC | 59.651 | 44.000 | 1.78 | 0.00 | 46.75 | 3.71 |
7252 | 8298 | 4.923871 | CGTCTATACAAGCAGTTGTGTTCT | 59.076 | 41.667 | 1.78 | 0.00 | 46.75 | 3.01 |
7253 | 8299 | 4.921515 | TCGTCTATACAAGCAGTTGTGTTC | 59.078 | 41.667 | 1.78 | 0.00 | 46.75 | 3.18 |
7254 | 8300 | 4.878439 | TCGTCTATACAAGCAGTTGTGTT | 58.122 | 39.130 | 1.78 | 0.00 | 46.75 | 3.32 |
7256 | 8302 | 5.576774 | TCATTCGTCTATACAAGCAGTTGTG | 59.423 | 40.000 | 1.78 | 0.00 | 46.75 | 3.33 |
7258 | 8304 | 5.233050 | CCTCATTCGTCTATACAAGCAGTTG | 59.767 | 44.000 | 0.00 | 0.00 | 39.82 | 3.16 |
7259 | 8305 | 5.352284 | CCTCATTCGTCTATACAAGCAGTT | 58.648 | 41.667 | 0.00 | 0.00 | 0.00 | 3.16 |
7313 | 8360 | 2.766313 | TGATTCCTCGTTTGTCCACAG | 58.234 | 47.619 | 0.00 | 0.00 | 0.00 | 3.66 |
7314 | 8361 | 2.920724 | TGATTCCTCGTTTGTCCACA | 57.079 | 45.000 | 0.00 | 0.00 | 0.00 | 4.17 |
7316 | 8363 | 6.001460 | ACTAATTTGATTCCTCGTTTGTCCA | 58.999 | 36.000 | 0.00 | 0.00 | 0.00 | 4.02 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.