Multiple sequence alignment - TraesCS2B01G448200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G448200 chr2B 100.000 8984 0 0 1 8984 640991797 640982814 0.000000e+00 16591.0
1 TraesCS2B01G448200 chr2B 85.300 517 65 8 1 506 134253207 134253723 2.870000e-144 523.0
2 TraesCS2B01G448200 chr2B 88.889 117 13 0 3058 3174 640988626 640988510 2.610000e-30 145.0
3 TraesCS2B01G448200 chr2B 88.889 117 13 0 3172 3288 640988740 640988624 2.610000e-30 145.0
4 TraesCS2B01G448200 chr2A 93.787 7629 265 73 674 8194 680370764 680363237 0.000000e+00 11269.0
5 TraesCS2B01G448200 chr2A 85.029 521 67 8 3 512 537233576 537234096 3.720000e-143 520.0
6 TraesCS2B01G448200 chr2A 84.942 518 67 8 3 509 669747265 669746748 1.730000e-141 514.0
7 TraesCS2B01G448200 chr2A 88.889 117 13 0 3058 3174 680368259 680368143 2.610000e-30 145.0
8 TraesCS2B01G448200 chr2A 88.889 117 13 0 3172 3288 680368373 680368257 2.610000e-30 145.0
9 TraesCS2B01G448200 chr2D 94.830 6654 220 39 607 7203 538069226 538062640 0.000000e+00 10268.0
10 TraesCS2B01G448200 chr2D 86.283 904 60 30 7330 8194 538062297 538061419 0.000000e+00 924.0
11 TraesCS2B01G448200 chr2D 88.034 117 14 0 3058 3174 538066677 538066561 1.220000e-28 139.0
12 TraesCS2B01G448200 chr2D 88.034 117 14 0 3172 3288 538066791 538066675 1.220000e-28 139.0
13 TraesCS2B01G448200 chr2D 98.148 54 1 0 7210 7263 538062454 538062401 2.670000e-15 95.3
14 TraesCS2B01G448200 chr7B 98.298 764 13 0 8220 8983 6399959 6399196 0.000000e+00 1339.0
15 TraesCS2B01G448200 chr7B 97.656 768 18 0 8217 8984 377904081 377904848 0.000000e+00 1319.0
16 TraesCS2B01G448200 chr7B 85.243 515 65 8 3 506 380072797 380073311 3.720000e-143 520.0
17 TraesCS2B01G448200 chr4A 97.917 768 16 0 8217 8984 570904902 570905669 0.000000e+00 1330.0
18 TraesCS2B01G448200 chr4A 96.619 769 19 5 8217 8984 709884196 709884958 0.000000e+00 1269.0
19 TraesCS2B01G448200 chr3B 97.786 768 17 0 8217 8984 760057410 760058177 0.000000e+00 1325.0
20 TraesCS2B01G448200 chr3B 84.854 515 67 8 3 506 463483653 463484167 8.050000e-140 508.0
21 TraesCS2B01G448200 chr5B 97.386 765 20 0 8220 8984 585503410 585502646 0.000000e+00 1303.0
22 TraesCS2B01G448200 chr5B 84.942 518 67 8 3 509 710236141 710235624 1.730000e-141 514.0
23 TraesCS2B01G448200 chr1B 96.863 765 24 0 8220 8984 20832714 20831950 0.000000e+00 1280.0
24 TraesCS2B01G448200 chrUn 96.094 768 30 0 8217 8984 76581138 76581905 0.000000e+00 1253.0
25 TraesCS2B01G448200 chrUn 84.854 515 67 8 3 506 136394823 136395337 8.050000e-140 508.0
26 TraesCS2B01G448200 chr3D 94.301 737 41 1 8249 8984 540256788 540257524 0.000000e+00 1127.0
27 TraesCS2B01G448200 chr3D 85.164 519 66 8 3 510 24569193 24569711 1.030000e-143 521.0
28 TraesCS2B01G448200 chr6A 84.942 518 67 8 3 509 591940821 591940304 1.730000e-141 514.0
29 TraesCS2B01G448200 chr7D 86.694 481 26 16 6932 7378 50325937 50326413 4.840000e-137 499.0
30 TraesCS2B01G448200 chr6D 86.481 466 33 14 6930 7377 438125467 438125014 1.360000e-132 484.0
31 TraesCS2B01G448200 chr7A 84.855 482 33 18 6930 7377 22644421 22644896 4.950000e-122 449.0
32 TraesCS2B01G448200 chr1A 84.855 482 33 18 6930 7377 67650580 67651055 4.950000e-122 449.0
33 TraesCS2B01G448200 chr6B 84.025 482 37 16 6930 7377 698552870 698552395 2.320000e-115 427.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G448200 chr2B 640982814 640991797 8983 True 5627.00 16591 92.592667 1 8984 3 chr2B.!!$R1 8983
1 TraesCS2B01G448200 chr2B 134253207 134253723 516 False 523.00 523 85.300000 1 506 1 chr2B.!!$F1 505
2 TraesCS2B01G448200 chr2A 680363237 680370764 7527 True 3853.00 11269 90.521667 674 8194 3 chr2A.!!$R2 7520
3 TraesCS2B01G448200 chr2A 537233576 537234096 520 False 520.00 520 85.029000 3 512 1 chr2A.!!$F1 509
4 TraesCS2B01G448200 chr2A 669746748 669747265 517 True 514.00 514 84.942000 3 509 1 chr2A.!!$R1 506
5 TraesCS2B01G448200 chr2D 538061419 538069226 7807 True 2313.06 10268 91.065800 607 8194 5 chr2D.!!$R1 7587
6 TraesCS2B01G448200 chr7B 6399196 6399959 763 True 1339.00 1339 98.298000 8220 8983 1 chr7B.!!$R1 763
7 TraesCS2B01G448200 chr7B 377904081 377904848 767 False 1319.00 1319 97.656000 8217 8984 1 chr7B.!!$F1 767
8 TraesCS2B01G448200 chr7B 380072797 380073311 514 False 520.00 520 85.243000 3 506 1 chr7B.!!$F2 503
9 TraesCS2B01G448200 chr4A 570904902 570905669 767 False 1330.00 1330 97.917000 8217 8984 1 chr4A.!!$F1 767
10 TraesCS2B01G448200 chr4A 709884196 709884958 762 False 1269.00 1269 96.619000 8217 8984 1 chr4A.!!$F2 767
11 TraesCS2B01G448200 chr3B 760057410 760058177 767 False 1325.00 1325 97.786000 8217 8984 1 chr3B.!!$F2 767
12 TraesCS2B01G448200 chr3B 463483653 463484167 514 False 508.00 508 84.854000 3 506 1 chr3B.!!$F1 503
13 TraesCS2B01G448200 chr5B 585502646 585503410 764 True 1303.00 1303 97.386000 8220 8984 1 chr5B.!!$R1 764
14 TraesCS2B01G448200 chr5B 710235624 710236141 517 True 514.00 514 84.942000 3 509 1 chr5B.!!$R2 506
15 TraesCS2B01G448200 chr1B 20831950 20832714 764 True 1280.00 1280 96.863000 8220 8984 1 chr1B.!!$R1 764
16 TraesCS2B01G448200 chrUn 76581138 76581905 767 False 1253.00 1253 96.094000 8217 8984 1 chrUn.!!$F1 767
17 TraesCS2B01G448200 chrUn 136394823 136395337 514 False 508.00 508 84.854000 3 506 1 chrUn.!!$F2 503
18 TraesCS2B01G448200 chr3D 540256788 540257524 736 False 1127.00 1127 94.301000 8249 8984 1 chr3D.!!$F2 735
19 TraesCS2B01G448200 chr3D 24569193 24569711 518 False 521.00 521 85.164000 3 510 1 chr3D.!!$F1 507
20 TraesCS2B01G448200 chr6A 591940304 591940821 517 True 514.00 514 84.942000 3 509 1 chr6A.!!$R1 506

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
619 630 0.196118 AGTTTTGAGGGAGAGGGGGA 59.804 55.000 0.00 0.00 0.00 4.81 F
761 773 0.392461 ACCATTCCCGATGAACGTGG 60.392 55.000 0.00 6.01 39.33 4.94 F
1817 1863 1.004044 CCTGCAGAGTTGAGGATTGGT 59.996 52.381 17.39 0.00 0.00 3.67 F
2411 2466 0.883833 CTTTGTGACATGGGTGGCTC 59.116 55.000 0.00 0.00 33.19 4.70 F
3589 3698 1.180029 CACATGGAGCAGGAAAAGGG 58.820 55.000 0.00 0.00 0.00 3.95 F
3913 4022 0.529378 CACATGGAGCAGGAAAAGGC 59.471 55.000 0.00 0.00 0.00 4.35 F
5189 5299 0.447801 CCATGGTTTGTAGCGACAGC 59.552 55.000 2.57 0.00 45.58 4.40 F
5243 5353 1.333177 GTAGGACTCATCATCGGCCT 58.667 55.000 0.00 0.00 0.00 5.19 F
6697 6808 0.456221 CGAAGCGTGAGAGGTACCAT 59.544 55.000 15.94 1.21 0.00 3.55 F
7603 7990 0.101759 CTCTGAATTTGCCCATGCCG 59.898 55.000 0.00 0.00 36.33 5.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1480 1517 0.310854 GCAACAACCACTGGCACTAC 59.689 55.000 0.00 0.0 0.00 2.73 R
2342 2397 1.043022 CTGGTTTGCTGGCTCCTTTT 58.957 50.000 0.00 0.0 0.00 2.27 R
3537 3646 0.813821 GGATTTTCACCTGCCTGCTC 59.186 55.000 0.00 0.0 0.00 4.26 R
3888 3997 0.252421 TCCTGCTCCATGTGGACTCT 60.252 55.000 0.00 0.0 39.78 3.24 R
5172 5282 0.036164 TGGCTGTCGCTACAAACCAT 59.964 50.000 8.29 0.0 37.12 3.55 R
5442 5553 1.152567 CCTTTGGTGTGCCTTCCCA 60.153 57.895 0.00 0.0 35.27 4.37 R
6614 6725 1.047596 TCTCTGGCCTCCTCAGCATC 61.048 60.000 3.32 0.0 32.63 3.91 R
7204 7323 1.808411 CAATACTTGGGTGCAGACGT 58.192 50.000 0.00 0.0 0.00 4.34 R
7693 8096 0.179161 CGCCGTCGTCTTGATCTTCT 60.179 55.000 0.00 0.0 0.00 2.85 R
8900 9337 0.323629 TGCCTCCAAGAAGGTAACGG 59.676 55.000 0.00 0.0 46.39 4.44 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 1.618343 GTTAGGGTTTGTGCCATGCTT 59.382 47.619 0.00 0.00 0.00 3.91
37 38 1.549203 AGGGTTTGTGCCATGCTTAG 58.451 50.000 0.00 0.00 0.00 2.18
38 39 1.075374 AGGGTTTGTGCCATGCTTAGA 59.925 47.619 0.00 0.00 0.00 2.10
44 45 5.125417 GGTTTGTGCCATGCTTAGAAAGATA 59.875 40.000 0.00 0.00 0.00 1.98
45 46 5.818136 TTGTGCCATGCTTAGAAAGATAC 57.182 39.130 0.00 0.00 0.00 2.24
47 48 2.872245 TGCCATGCTTAGAAAGATACGC 59.128 45.455 0.00 0.00 0.00 4.42
48 49 2.096713 GCCATGCTTAGAAAGATACGCG 60.097 50.000 3.53 3.53 0.00 6.01
50 51 2.953466 TGCTTAGAAAGATACGCGGT 57.047 45.000 12.47 0.00 0.00 5.68
51 52 4.295870 CATGCTTAGAAAGATACGCGGTA 58.704 43.478 12.47 0.25 0.00 4.02
53 54 3.379372 TGCTTAGAAAGATACGCGGTAGT 59.621 43.478 12.47 0.00 0.00 2.73
57 59 2.098770 AGAAAGATACGCGGTAGTGACC 59.901 50.000 12.47 0.00 43.03 4.02
94 96 1.562672 GGTTCTTCCAGCCTAGCCCA 61.563 60.000 0.00 0.00 35.97 5.36
97 100 0.547712 TCTTCCAGCCTAGCCCAGTT 60.548 55.000 0.00 0.00 0.00 3.16
107 110 0.253044 TAGCCCAGTTCTGGTGATGC 59.747 55.000 16.33 12.36 0.00 3.91
115 118 1.135859 GTTCTGGTGATGCTTCAAGCG 60.136 52.381 4.57 0.00 46.26 4.68
120 123 1.001378 GGTGATGCTTCAAGCGTTGTT 60.001 47.619 5.35 0.00 46.26 2.83
124 127 0.662619 TGCTTCAAGCGTTGTTGGAG 59.337 50.000 4.57 0.00 46.26 3.86
138 141 4.394712 GGAGGGCGTGTGGAGGTG 62.395 72.222 0.00 0.00 0.00 4.00
140 143 3.168528 AGGGCGTGTGGAGGTGTT 61.169 61.111 0.00 0.00 0.00 3.32
163 166 2.822399 GGCGGATCTCGTGGGATT 59.178 61.111 5.66 0.00 41.72 3.01
165 168 1.441729 GCGGATCTCGTGGGATTCA 59.558 57.895 5.66 0.00 41.72 2.57
181 184 3.564225 GGATTCAGTCGGTGTTTGTCTTT 59.436 43.478 0.00 0.00 0.00 2.52
182 185 4.036380 GGATTCAGTCGGTGTTTGTCTTTT 59.964 41.667 0.00 0.00 0.00 2.27
192 195 3.066203 GTGTTTGTCTTTTGTGGATCCGT 59.934 43.478 7.39 0.00 0.00 4.69
193 196 3.066064 TGTTTGTCTTTTGTGGATCCGTG 59.934 43.478 7.39 0.00 0.00 4.94
194 197 1.890876 TGTCTTTTGTGGATCCGTGG 58.109 50.000 7.39 0.00 0.00 4.94
195 198 1.418264 TGTCTTTTGTGGATCCGTGGA 59.582 47.619 7.39 0.00 0.00 4.02
196 199 2.039746 TGTCTTTTGTGGATCCGTGGAT 59.960 45.455 7.39 0.00 37.59 3.41
206 217 4.143333 CCGTGGATCCGGTTCGCT 62.143 66.667 7.39 0.00 43.07 4.93
209 220 0.249322 CGTGGATCCGGTTCGCTTAT 60.249 55.000 7.39 0.00 0.00 1.73
220 231 2.806244 GGTTCGCTTATGTCTGTGTGTT 59.194 45.455 0.00 0.00 0.00 3.32
238 249 2.158475 TGTTTGCAGGTTGGATCCTTCT 60.158 45.455 14.23 4.81 35.37 2.85
240 251 1.361204 TGCAGGTTGGATCCTTCTGA 58.639 50.000 23.91 12.22 35.37 3.27
242 253 3.114606 TGCAGGTTGGATCCTTCTGATA 58.885 45.455 23.91 13.89 35.37 2.15
263 274 0.461548 ATGCTTCTCTTCATCGGCGA 59.538 50.000 13.87 13.87 0.00 5.54
265 276 0.458543 GCTTCTCTTCATCGGCGACA 60.459 55.000 13.76 0.00 0.00 4.35
277 288 0.666274 CGGCGACAGTTGCTGTTCTA 60.666 55.000 13.08 0.00 45.44 2.10
308 319 3.518303 GTCCTATGGGGCCTTATTACGAT 59.482 47.826 0.84 0.00 34.39 3.73
320 331 2.884894 ATTACGATGACTTCCCGACC 57.115 50.000 0.00 0.00 0.00 4.79
324 335 1.141234 GATGACTTCCCGACCGTCC 59.859 63.158 0.00 0.00 0.00 4.79
369 380 2.343163 GACGAGCGAGGGGTGATGAG 62.343 65.000 0.00 0.00 0.00 2.90
374 385 2.764128 GAGGGGTGATGAGGGCGA 60.764 66.667 0.00 0.00 0.00 5.54
378 389 4.451150 GGTGATGAGGGCGACGCA 62.451 66.667 23.09 0.12 0.00 5.24
380 391 3.690280 TGATGAGGGCGACGCACA 61.690 61.111 26.14 18.96 32.33 4.57
388 399 3.788766 GCGACGCACATTCGGCTT 61.789 61.111 16.42 0.00 36.96 4.35
407 418 1.047801 TGCTCCAGTGCTTGTAGTCA 58.952 50.000 0.00 0.00 0.00 3.41
415 426 3.017442 AGTGCTTGTAGTCATCGCTAGA 58.983 45.455 0.00 0.00 0.00 2.43
431 442 4.068599 CGCTAGATGATCTACAGACCTGA 58.931 47.826 3.76 0.00 0.00 3.86
434 445 6.372937 CGCTAGATGATCTACAGACCTGAATA 59.627 42.308 3.76 0.00 0.00 1.75
488 499 6.647229 AGCTTCACAATTGATGACTAGATCA 58.353 36.000 13.59 0.00 43.13 2.92
496 507 9.160496 ACAATTGATGACTAGATCAGAAGTTTC 57.840 33.333 13.59 0.00 41.91 2.78
497 508 9.381033 CAATTGATGACTAGATCAGAAGTTTCT 57.619 33.333 0.00 0.00 41.91 2.52
498 509 9.598517 AATTGATGACTAGATCAGAAGTTTCTC 57.401 33.333 0.00 0.00 41.91 2.87
499 510 6.790282 TGATGACTAGATCAGAAGTTTCTCG 58.210 40.000 0.00 0.00 41.91 4.04
500 511 6.375736 TGATGACTAGATCAGAAGTTTCTCGT 59.624 38.462 0.00 0.00 41.91 4.18
501 512 7.553044 TGATGACTAGATCAGAAGTTTCTCGTA 59.447 37.037 0.00 0.00 41.91 3.43
502 513 7.683437 TGACTAGATCAGAAGTTTCTCGTAA 57.317 36.000 0.00 0.00 34.74 3.18
503 514 8.107399 TGACTAGATCAGAAGTTTCTCGTAAA 57.893 34.615 0.00 0.00 34.74 2.01
504 515 8.573885 TGACTAGATCAGAAGTTTCTCGTAAAA 58.426 33.333 0.00 0.00 34.74 1.52
505 516 9.408069 GACTAGATCAGAAGTTTCTCGTAAAAA 57.592 33.333 0.00 0.00 34.74 1.94
506 517 9.194271 ACTAGATCAGAAGTTTCTCGTAAAAAC 57.806 33.333 0.00 0.00 34.74 2.43
507 518 9.193133 CTAGATCAGAAGTTTCTCGTAAAAACA 57.807 33.333 0.00 0.00 38.73 2.83
508 519 8.433421 AGATCAGAAGTTTCTCGTAAAAACAA 57.567 30.769 0.00 0.00 38.73 2.83
509 520 8.552034 AGATCAGAAGTTTCTCGTAAAAACAAG 58.448 33.333 0.00 0.00 38.73 3.16
510 521 7.837202 TCAGAAGTTTCTCGTAAAAACAAGA 57.163 32.000 10.86 0.00 38.73 3.02
511 522 7.906160 TCAGAAGTTTCTCGTAAAAACAAGAG 58.094 34.615 10.86 0.00 38.73 2.85
512 523 7.011109 TCAGAAGTTTCTCGTAAAAACAAGAGG 59.989 37.037 10.86 0.00 38.73 3.69
513 524 6.260271 AGAAGTTTCTCGTAAAAACAAGAGGG 59.740 38.462 10.86 0.00 38.73 4.30
514 525 5.677567 AGTTTCTCGTAAAAACAAGAGGGA 58.322 37.500 10.86 0.00 38.73 4.20
515 526 5.526479 AGTTTCTCGTAAAAACAAGAGGGAC 59.474 40.000 10.86 0.00 38.73 4.46
516 527 4.675976 TCTCGTAAAAACAAGAGGGACA 57.324 40.909 0.00 0.00 0.00 4.02
517 528 5.223449 TCTCGTAAAAACAAGAGGGACAT 57.777 39.130 0.00 0.00 0.00 3.06
518 529 4.994852 TCTCGTAAAAACAAGAGGGACATG 59.005 41.667 0.00 0.00 0.00 3.21
519 530 4.710324 TCGTAAAAACAAGAGGGACATGT 58.290 39.130 0.00 0.00 0.00 3.21
520 531 4.753107 TCGTAAAAACAAGAGGGACATGTC 59.247 41.667 17.91 17.91 0.00 3.06
521 532 4.513692 CGTAAAAACAAGAGGGACATGTCA 59.486 41.667 26.47 0.00 0.00 3.58
522 533 5.181245 CGTAAAAACAAGAGGGACATGTCAT 59.819 40.000 26.47 14.82 0.00 3.06
523 534 5.458041 AAAAACAAGAGGGACATGTCATG 57.542 39.130 26.47 17.52 0.00 3.07
524 535 2.119801 ACAAGAGGGACATGTCATGC 57.880 50.000 26.47 14.32 0.00 4.06
525 536 1.632409 ACAAGAGGGACATGTCATGCT 59.368 47.619 26.47 16.21 0.00 3.79
526 537 2.840038 ACAAGAGGGACATGTCATGCTA 59.160 45.455 26.47 0.00 0.00 3.49
527 538 3.201290 CAAGAGGGACATGTCATGCTAC 58.799 50.000 26.47 8.46 0.00 3.58
528 539 2.470990 AGAGGGACATGTCATGCTACA 58.529 47.619 26.47 0.00 0.00 2.74
529 540 2.169352 AGAGGGACATGTCATGCTACAC 59.831 50.000 26.47 7.02 30.75 2.90
530 541 1.908619 AGGGACATGTCATGCTACACA 59.091 47.619 26.47 0.00 30.75 3.72
531 542 2.009774 GGGACATGTCATGCTACACAC 58.990 52.381 26.47 5.60 30.75 3.82
532 543 2.615240 GGGACATGTCATGCTACACACA 60.615 50.000 26.47 0.00 30.75 3.72
533 544 3.273434 GGACATGTCATGCTACACACAT 58.727 45.455 26.47 0.00 30.75 3.21
534 545 4.441792 GGACATGTCATGCTACACACATA 58.558 43.478 26.47 0.00 30.75 2.29
535 546 4.875536 GGACATGTCATGCTACACACATAA 59.124 41.667 26.47 0.00 30.75 1.90
536 547 5.353956 GGACATGTCATGCTACACACATAAA 59.646 40.000 26.47 0.00 30.75 1.40
537 548 6.182039 ACATGTCATGCTACACACATAAAC 57.818 37.500 12.91 0.00 30.75 2.01
538 549 5.939883 ACATGTCATGCTACACACATAAACT 59.060 36.000 12.91 0.00 30.75 2.66
539 550 5.861222 TGTCATGCTACACACATAAACTG 57.139 39.130 0.00 0.00 0.00 3.16
540 551 5.546526 TGTCATGCTACACACATAAACTGA 58.453 37.500 0.00 0.00 0.00 3.41
541 552 5.408299 TGTCATGCTACACACATAAACTGAC 59.592 40.000 0.00 0.00 0.00 3.51
542 553 5.408299 GTCATGCTACACACATAAACTGACA 59.592 40.000 0.00 0.00 0.00 3.58
543 554 6.092670 GTCATGCTACACACATAAACTGACAT 59.907 38.462 0.00 0.00 0.00 3.06
544 555 5.861222 TGCTACACACATAAACTGACATG 57.139 39.130 0.00 0.00 0.00 3.21
545 556 4.154015 TGCTACACACATAAACTGACATGC 59.846 41.667 0.00 0.00 0.00 4.06
546 557 4.393062 GCTACACACATAAACTGACATGCT 59.607 41.667 0.00 0.00 0.00 3.79
547 558 5.446473 GCTACACACATAAACTGACATGCTC 60.446 44.000 0.00 0.00 0.00 4.26
548 559 4.645535 ACACACATAAACTGACATGCTCT 58.354 39.130 0.00 0.00 0.00 4.09
549 560 5.793817 ACACACATAAACTGACATGCTCTA 58.206 37.500 0.00 0.00 0.00 2.43
550 561 5.871524 ACACACATAAACTGACATGCTCTAG 59.128 40.000 0.00 0.00 0.00 2.43
551 562 6.101997 CACACATAAACTGACATGCTCTAGA 58.898 40.000 0.00 0.00 0.00 2.43
552 563 6.760298 CACACATAAACTGACATGCTCTAGAT 59.240 38.462 0.00 0.00 0.00 1.98
553 564 7.922811 CACACATAAACTGACATGCTCTAGATA 59.077 37.037 0.00 0.00 0.00 1.98
554 565 8.646004 ACACATAAACTGACATGCTCTAGATAT 58.354 33.333 0.00 0.00 0.00 1.63
555 566 9.486497 CACATAAACTGACATGCTCTAGATATT 57.514 33.333 0.00 0.00 0.00 1.28
605 616 6.380095 TTTTTGCCATCTGTACGTAGTTTT 57.620 33.333 0.00 0.00 37.78 2.43
606 617 5.351233 TTTGCCATCTGTACGTAGTTTTG 57.649 39.130 0.00 0.00 37.78 2.44
607 618 4.260139 TGCCATCTGTACGTAGTTTTGA 57.740 40.909 0.00 0.00 37.78 2.69
608 619 4.242475 TGCCATCTGTACGTAGTTTTGAG 58.758 43.478 0.00 0.00 37.78 3.02
609 620 3.617263 GCCATCTGTACGTAGTTTTGAGG 59.383 47.826 0.00 0.00 37.78 3.86
610 621 4.181578 CCATCTGTACGTAGTTTTGAGGG 58.818 47.826 0.00 0.00 37.78 4.30
611 622 4.081862 CCATCTGTACGTAGTTTTGAGGGA 60.082 45.833 0.00 0.00 37.78 4.20
612 623 4.778534 TCTGTACGTAGTTTTGAGGGAG 57.221 45.455 0.00 0.00 37.78 4.30
613 624 4.401022 TCTGTACGTAGTTTTGAGGGAGA 58.599 43.478 0.00 0.00 37.78 3.71
614 625 4.458295 TCTGTACGTAGTTTTGAGGGAGAG 59.542 45.833 0.00 0.00 37.78 3.20
615 626 3.508793 TGTACGTAGTTTTGAGGGAGAGG 59.491 47.826 0.00 0.00 37.78 3.69
619 630 0.196118 AGTTTTGAGGGAGAGGGGGA 59.804 55.000 0.00 0.00 0.00 4.81
633 644 1.399057 GGGGAGGGGAGTAAAGGGA 59.601 63.158 0.00 0.00 0.00 4.20
639 650 3.647113 GGAGGGGAGTAAAGGGATAAGAC 59.353 52.174 0.00 0.00 0.00 3.01
643 654 2.125685 GAGTAAAGGGATAAGACGCGC 58.874 52.381 5.73 0.00 0.00 6.86
656 667 2.051345 CGCGCCTTGTGTTGTTCC 60.051 61.111 0.00 0.00 0.00 3.62
660 671 0.817634 CGCCTTGTGTTGTTCCCTCA 60.818 55.000 0.00 0.00 0.00 3.86
684 696 1.078708 CCATGGTACCCCACGACAC 60.079 63.158 10.07 0.00 45.65 3.67
694 706 1.001520 CCCCACGACACTTGTCATGTA 59.998 52.381 9.94 0.00 44.99 2.29
706 718 1.592543 TGTCATGTATCATTCGCGCAC 59.407 47.619 8.75 0.00 0.00 5.34
709 721 0.576798 ATGTATCATTCGCGCACACG 59.423 50.000 8.75 0.00 44.07 4.49
710 722 0.456995 TGTATCATTCGCGCACACGA 60.457 50.000 8.75 0.00 43.93 4.35
728 740 4.756642 ACACGATCAAACACATCACAGATT 59.243 37.500 0.00 0.00 0.00 2.40
743 755 8.230486 ACATCACAGATTATTCGTTCAGAAAAC 58.770 33.333 0.00 0.00 42.91 2.43
751 763 2.147958 TCGTTCAGAAAACCATTCCCG 58.852 47.619 0.00 0.00 0.00 5.14
753 765 2.747446 CGTTCAGAAAACCATTCCCGAT 59.253 45.455 0.00 0.00 0.00 4.18
754 766 3.426159 CGTTCAGAAAACCATTCCCGATG 60.426 47.826 0.00 0.00 35.42 3.84
756 768 4.027674 TCAGAAAACCATTCCCGATGAA 57.972 40.909 0.00 0.00 38.03 2.57
757 769 3.756434 TCAGAAAACCATTCCCGATGAAC 59.244 43.478 0.00 0.00 38.03 3.18
759 771 2.194201 AAACCATTCCCGATGAACGT 57.806 45.000 0.00 0.00 38.03 3.99
760 772 1.448985 AACCATTCCCGATGAACGTG 58.551 50.000 0.00 0.00 38.03 4.49
761 773 0.392461 ACCATTCCCGATGAACGTGG 60.392 55.000 0.00 6.01 39.33 4.94
847 860 6.825610 TGCAAGAAAAATTGATAACCAACCT 58.174 32.000 0.00 0.00 37.63 3.50
872 885 6.917477 TGTCACTAGCAAACATTTGACATTTC 59.083 34.615 8.54 0.00 38.68 2.17
888 901 8.815141 TTGACATTTCTCAAATATTGTTGGTG 57.185 30.769 0.00 0.00 0.00 4.17
964 990 1.922570 CGTAAGTAGCTGTCGGCATT 58.077 50.000 6.39 0.41 44.79 3.56
968 994 2.423926 AGTAGCTGTCGGCATTATCG 57.576 50.000 6.39 0.00 44.79 2.92
970 996 2.100916 AGTAGCTGTCGGCATTATCGTT 59.899 45.455 6.39 0.00 44.79 3.85
979 1005 1.064060 GGCATTATCGTTCCACACAGC 59.936 52.381 0.00 0.00 0.00 4.40
981 1007 2.223112 GCATTATCGTTCCACACAGCAG 60.223 50.000 0.00 0.00 0.00 4.24
982 1008 1.438651 TTATCGTTCCACACAGCAGC 58.561 50.000 0.00 0.00 0.00 5.25
984 1010 4.374702 CGTTCCACACAGCAGCGC 62.375 66.667 0.00 0.00 0.00 5.92
985 1011 2.974698 GTTCCACACAGCAGCGCT 60.975 61.111 2.64 2.64 40.77 5.92
1510 1547 2.936498 GTGGTTGTTGCTACGATGCTAT 59.064 45.455 0.00 0.00 0.00 2.97
1529 1566 6.382608 TGCTATCGTTTCTGTCTATATGAGC 58.617 40.000 0.00 0.00 0.00 4.26
1530 1567 6.207614 TGCTATCGTTTCTGTCTATATGAGCT 59.792 38.462 0.00 0.00 0.00 4.09
1573 1615 4.741676 GCATTGCTAAGAATGTGTAATGCC 59.258 41.667 13.99 1.31 46.40 4.40
1593 1635 3.106672 CCTGTGTCGTCGCTATTTAGTC 58.893 50.000 0.00 0.00 0.00 2.59
1627 1672 9.810545 ATTTCTGACTTGTCTAATAGTTCTAGC 57.189 33.333 2.35 0.00 0.00 3.42
1646 1691 2.644798 AGCCAGTGAGGTTAAATCAGGT 59.355 45.455 0.00 0.00 40.61 4.00
1667 1712 4.844655 GGTCAGGAATTTAGGGCTAGGATA 59.155 45.833 0.00 0.00 0.00 2.59
1672 1717 7.944554 TCAGGAATTTAGGGCTAGGATATTTTG 59.055 37.037 0.00 0.00 0.00 2.44
1724 1769 1.230149 TGGCCAATGTAGGGTCCCT 60.230 57.895 16.73 16.73 37.71 4.20
1778 1824 6.877611 TTTTTCTCTTGTTCGGCTAGAAAT 57.122 33.333 0.00 0.00 41.10 2.17
1796 1842 8.874816 GCTAGAAATAGACAAGGTTAAAGACTG 58.125 37.037 0.00 0.00 0.00 3.51
1817 1863 1.004044 CCTGCAGAGTTGAGGATTGGT 59.996 52.381 17.39 0.00 0.00 3.67
1837 1884 3.005472 GGTGGCCCTTTTAGAACAAGAAC 59.995 47.826 0.00 0.00 0.00 3.01
1848 1895 9.930693 CTTTTAGAACAAGAACTATACTCCTGT 57.069 33.333 0.00 0.00 0.00 4.00
1892 1940 9.045223 GGTGAAAATTAATCAAAGAAACAGCTT 57.955 29.630 0.00 0.00 0.00 3.74
1937 1985 1.807142 GTGCTTTGGGTAGCTCAAGAC 59.193 52.381 0.00 0.00 41.76 3.01
2008 2056 4.018870 TGAAACCAGTGTGGCTATGGAATA 60.019 41.667 0.00 0.00 42.67 1.75
2062 2110 6.742109 CAACCTCATTGGATGTGATATTTCC 58.258 40.000 0.00 0.00 39.71 3.13
2114 2162 2.105128 GAGCCGGATGGTCTCGTG 59.895 66.667 5.05 0.00 38.47 4.35
2129 2177 1.142748 CGTGGATCTCTGACTGGCC 59.857 63.158 0.00 0.00 0.00 5.36
2148 2196 1.280998 CCGGGGAACTAACTCACCAAT 59.719 52.381 0.00 0.00 39.03 3.16
2236 2284 3.264193 AGAAGCATCTCCCATGTTGTACA 59.736 43.478 0.00 0.00 0.00 2.90
2237 2285 2.991250 AGCATCTCCCATGTTGTACAC 58.009 47.619 0.00 0.00 0.00 2.90
2238 2286 2.305635 AGCATCTCCCATGTTGTACACA 59.694 45.455 0.00 0.00 40.71 3.72
2342 2397 5.505181 AAACAGAGGGAGAAATGCTAAGA 57.495 39.130 0.00 0.00 0.00 2.10
2378 2433 3.845860 ACCAGACTTAGTTCAGAGGACA 58.154 45.455 0.00 0.00 0.00 4.02
2411 2466 0.883833 CTTTGTGACATGGGTGGCTC 59.116 55.000 0.00 0.00 33.19 4.70
2446 2502 3.202151 TCAAGGAGAAGGTTGTCTTGGTT 59.798 43.478 0.00 0.00 35.50 3.67
2495 2551 1.281867 TCCCTATTCCAGTGCCAAGTG 59.718 52.381 0.00 0.00 0.00 3.16
2533 2589 6.792326 TCGTCAGAGTGAATCGTAATGTTAT 58.208 36.000 0.00 0.00 0.00 1.89
2548 2604 3.431673 TGTTATTGCCACTGACCATGA 57.568 42.857 0.00 0.00 0.00 3.07
2554 2611 1.962807 TGCCACTGACCATGAAAAAGG 59.037 47.619 0.00 0.00 0.00 3.11
2720 2791 2.315925 ATCGTCGTTGGATGCTTCAT 57.684 45.000 1.64 0.00 0.00 2.57
2723 2794 1.731709 CGTCGTTGGATGCTTCATTGA 59.268 47.619 1.64 0.00 0.00 2.57
2812 2883 9.271738 CAATTTTTGTTAACATGTTGGTCAAAC 57.728 29.630 21.42 16.19 39.41 2.93
2813 2884 6.969828 TTTTGTTAACATGTTGGTCAAACC 57.030 33.333 21.42 3.25 38.06 3.27
2815 2886 5.923733 TGTTAACATGTTGGTCAAACCTT 57.076 34.783 21.42 0.00 39.58 3.50
2816 2887 5.897050 TGTTAACATGTTGGTCAAACCTTC 58.103 37.500 21.42 0.00 39.58 3.46
2817 2888 5.419155 TGTTAACATGTTGGTCAAACCTTCA 59.581 36.000 21.42 0.00 39.58 3.02
2819 2890 5.413309 AACATGTTGGTCAAACCTTCAAA 57.587 34.783 11.07 0.00 39.58 2.69
2820 2891 5.009854 ACATGTTGGTCAAACCTTCAAAG 57.990 39.130 0.00 0.00 39.58 2.77
2821 2892 4.466015 ACATGTTGGTCAAACCTTCAAAGT 59.534 37.500 0.00 0.00 39.58 2.66
2822 2893 5.046663 ACATGTTGGTCAAACCTTCAAAGTT 60.047 36.000 0.00 0.00 39.58 2.66
2823 2894 4.815269 TGTTGGTCAAACCTTCAAAGTTG 58.185 39.130 0.00 0.00 39.58 3.16
2824 2895 4.524714 TGTTGGTCAAACCTTCAAAGTTGA 59.475 37.500 0.00 0.00 39.58 3.18
2825 2896 4.712122 TGGTCAAACCTTCAAAGTTGAC 57.288 40.909 13.69 13.69 39.58 3.18
2826 2897 3.127895 TGGTCAAACCTTCAAAGTTGACG 59.872 43.478 14.80 0.00 39.58 4.35
2884 2978 8.721133 TTTTAGTAGAGGGAGTATATCATGCA 57.279 34.615 0.00 0.00 0.00 3.96
2885 2979 7.704578 TTAGTAGAGGGAGTATATCATGCAC 57.295 40.000 0.00 0.00 0.00 4.57
2886 2980 5.898120 AGTAGAGGGAGTATATCATGCACT 58.102 41.667 0.00 0.00 0.00 4.40
2887 2981 5.714333 AGTAGAGGGAGTATATCATGCACTG 59.286 44.000 0.00 0.00 0.00 3.66
2888 2982 4.487804 AGAGGGAGTATATCATGCACTGT 58.512 43.478 0.00 0.00 0.00 3.55
2889 2983 5.645201 AGAGGGAGTATATCATGCACTGTA 58.355 41.667 0.00 0.00 0.00 2.74
2984 3078 2.690497 TCGTGCAGGAATGGTTCAAAAA 59.310 40.909 6.64 0.00 0.00 1.94
3035 3144 5.324832 TTTTTGGAGAGGAGTCCTTCAAT 57.675 39.130 14.41 0.00 37.52 2.57
3062 3171 2.146342 CGAGCTGAACCAAGAACACAT 58.854 47.619 0.00 0.00 0.00 3.21
3073 3182 4.400251 ACCAAGAACACATATTGATGCAGG 59.600 41.667 0.00 0.00 36.43 4.85
3112 3221 2.119495 GCCTCCTAATCCTTCAGTCCA 58.881 52.381 0.00 0.00 0.00 4.02
3403 3512 1.609320 GCCCACAGAGTCTTCAGTTCC 60.609 57.143 0.00 0.00 0.00 3.62
3537 3646 3.754850 TCAGCATCAAGTTGTCCATGAAG 59.245 43.478 2.11 0.00 0.00 3.02
3589 3698 1.180029 CACATGGAGCAGGAAAAGGG 58.820 55.000 0.00 0.00 0.00 3.95
3721 3830 3.618690 AGTAATGCCCACTGAGTCTTC 57.381 47.619 0.00 0.00 0.00 2.87
3888 3997 4.597507 AGGAAGGTGAAAATCCTAGTGACA 59.402 41.667 0.00 0.00 41.74 3.58
3913 4022 0.529378 CACATGGAGCAGGAAAAGGC 59.471 55.000 0.00 0.00 0.00 4.35
3965 4074 9.797556 AAAAATATAAAGAGCACCGAAAATACC 57.202 29.630 0.00 0.00 0.00 2.73
3967 4076 8.691661 AATATAAAGAGCACCGAAAATACCAT 57.308 30.769 0.00 0.00 0.00 3.55
4093 4202 5.579753 ATTGATGTTGAGCCTATCCAGAT 57.420 39.130 0.00 0.00 0.00 2.90
4141 4250 2.105006 TCAGAAGCTCCACAGATTGC 57.895 50.000 0.00 0.00 0.00 3.56
4201 4310 1.559682 GTGGGCACTTCCTAATCCTGA 59.440 52.381 0.00 0.00 34.39 3.86
4500 4609 2.304761 ACTTTGCCCACTATTTCCTCGA 59.695 45.455 0.00 0.00 0.00 4.04
4925 5034 4.806342 TGAGAACGTTAGCTTGAAAACC 57.194 40.909 0.00 0.00 0.00 3.27
4975 5084 7.492669 GCATGAGTTTCATCTGTAGTAGCTTTA 59.507 37.037 0.00 0.00 34.28 1.85
4985 5094 8.784043 CATCTGTAGTAGCTTTACTTTGGTTTT 58.216 33.333 0.00 0.00 0.00 2.43
5082 5191 0.913205 TAAGGCTACCCGAAATGGCA 59.087 50.000 0.00 0.00 35.87 4.92
5172 5282 3.893753 TTCAGTTTCCCTCCATTTCCA 57.106 42.857 0.00 0.00 0.00 3.53
5189 5299 0.447801 CCATGGTTTGTAGCGACAGC 59.552 55.000 2.57 0.00 45.58 4.40
5219 5329 1.382522 CATCCGCCTTATGTGTTGCT 58.617 50.000 0.00 0.00 0.00 3.91
5235 5345 2.924290 GTTGCTTGTCGTAGGACTCATC 59.076 50.000 16.00 7.43 43.79 2.92
5243 5353 1.333177 GTAGGACTCATCATCGGCCT 58.667 55.000 0.00 0.00 0.00 5.19
5442 5553 3.838244 TGGTATCTTCTTAAGCGGCAT 57.162 42.857 1.45 0.00 0.00 4.40
5445 5556 1.972872 ATCTTCTTAAGCGGCATGGG 58.027 50.000 1.45 0.00 0.00 4.00
5486 5597 9.886132 GTTCTAGTTATGATAGAAAGACCCAAA 57.114 33.333 0.00 0.00 40.11 3.28
5557 5668 9.276590 GAATTTCACCTTTTCATGGAAATCTTT 57.723 29.630 0.00 0.00 37.24 2.52
5670 5781 1.746991 GGCCCTTCAGTGCTAGTGC 60.747 63.158 0.00 0.00 40.20 4.40
6046 6157 4.754372 TTGCTCACTGTAAGATTTGCAG 57.246 40.909 5.53 5.53 46.98 4.41
6501 6612 4.444388 GCTCACAAATCATAGCAATGCATG 59.556 41.667 8.35 9.44 35.05 4.06
6554 6665 4.340381 AGAATGCAATTTCTGGGTGCTATC 59.660 41.667 1.73 0.00 36.07 2.08
6697 6808 0.456221 CGAAGCGTGAGAGGTACCAT 59.544 55.000 15.94 1.21 0.00 3.55
6829 6940 4.035324 CAGCTGATGATTAACCAAGCTCTG 59.965 45.833 8.42 0.00 0.00 3.35
7033 7149 3.305516 GGTGGCTGTTGCAAGGGG 61.306 66.667 0.00 0.00 41.91 4.79
7130 7246 2.041265 GGGAGAAGAGGCCCCTCA 59.959 66.667 16.19 0.00 44.99 3.86
7185 7304 2.514160 GTGGGGTCTGGGGATAAAATCT 59.486 50.000 0.00 0.00 0.00 2.40
7204 7323 4.746535 TCTGGGTTTTCTCGCATGTATA 57.253 40.909 0.00 0.00 0.00 1.47
7206 7325 3.191669 TGGGTTTTCTCGCATGTATACG 58.808 45.455 0.00 0.00 0.00 3.06
7207 7326 3.192466 GGGTTTTCTCGCATGTATACGT 58.808 45.455 0.00 0.00 0.00 3.57
7208 7327 3.244579 GGGTTTTCTCGCATGTATACGTC 59.755 47.826 0.00 0.00 0.00 4.34
7276 7574 5.003804 TGTAGAAGAAGAAATTGAGGTGCC 58.996 41.667 0.00 0.00 0.00 5.01
7294 7592 2.143925 GCCCAATCTAATGCTACCGTC 58.856 52.381 0.00 0.00 0.00 4.79
7295 7593 2.484770 GCCCAATCTAATGCTACCGTCA 60.485 50.000 0.00 0.00 0.00 4.35
7301 7599 6.073548 CCAATCTAATGCTACCGTCATCTTTC 60.074 42.308 0.00 0.00 0.00 2.62
7430 7801 8.537728 TTAATATTGAGACTGGGCAAAATCAT 57.462 30.769 0.00 0.00 0.00 2.45
7433 7804 3.972133 TGAGACTGGGCAAAATCATCAT 58.028 40.909 0.00 0.00 0.00 2.45
7472 7853 4.575885 TGTATACTTTCAGTCCTTGGCAC 58.424 43.478 4.17 0.00 0.00 5.01
7545 7926 2.096218 GCACGGACAGAAGATTTCACAC 60.096 50.000 0.00 0.00 0.00 3.82
7601 7988 1.820519 TGTCTCTGAATTTGCCCATGC 59.179 47.619 0.00 0.00 38.26 4.06
7603 7990 0.101759 CTCTGAATTTGCCCATGCCG 59.898 55.000 0.00 0.00 36.33 5.69
7612 7999 3.790437 CCCATGCCGCTCTCCAGT 61.790 66.667 0.00 0.00 0.00 4.00
7631 8018 1.984570 CCAGACTGGCCGGAGAGAA 60.985 63.158 21.41 0.00 0.00 2.87
7693 8096 1.261938 TTGATTCGGCGGAGGGAGAA 61.262 55.000 7.21 0.00 0.00 2.87
7701 8104 1.115467 GCGGAGGGAGAAGAAGATCA 58.885 55.000 0.00 0.00 0.00 2.92
7853 8268 3.346315 CTCAGGGTGTAAATCATGTGCA 58.654 45.455 0.00 0.00 0.00 4.57
7901 8317 5.008118 TGTGCATATGTTTTCAAAGTCGTCA 59.992 36.000 4.29 0.00 0.00 4.35
8097 8527 4.351054 CTGCCTGCCCCGGTTTCT 62.351 66.667 0.00 0.00 0.00 2.52
8103 8533 2.747855 GCCCCGGTTTCTCTGCAG 60.748 66.667 7.63 7.63 0.00 4.41
8105 8535 2.348998 CCCGGTTTCTCTGCAGCT 59.651 61.111 9.47 0.00 0.00 4.24
8111 8541 1.544314 GGTTTCTCTGCAGCTTCCTGT 60.544 52.381 9.47 0.00 41.26 4.00
8168 8598 3.682858 GCAGATAAAATAATCCGGCGCTA 59.317 43.478 7.64 0.00 0.00 4.26
8178 8608 3.811328 CGGCGCTATAGTTCGTCG 58.189 61.111 7.64 11.35 46.88 5.12
8188 8618 0.249405 TAGTTCGTCGGCCGTGTTTT 60.249 50.000 27.15 10.34 37.94 2.43
8194 8624 3.260740 TCGTCGGCCGTGTTTTAATAAT 58.739 40.909 27.15 0.00 37.94 1.28
8195 8625 4.428209 TCGTCGGCCGTGTTTTAATAATA 58.572 39.130 27.15 0.00 37.94 0.98
8196 8626 4.867047 TCGTCGGCCGTGTTTTAATAATAA 59.133 37.500 27.15 0.00 37.94 1.40
8197 8627 5.005586 TCGTCGGCCGTGTTTTAATAATAAG 59.994 40.000 27.15 2.93 37.94 1.73
8198 8628 5.504392 GTCGGCCGTGTTTTAATAATAAGG 58.496 41.667 27.15 0.00 0.00 2.69
8199 8629 5.065090 GTCGGCCGTGTTTTAATAATAAGGT 59.935 40.000 27.15 0.00 0.00 3.50
8200 8630 5.647225 TCGGCCGTGTTTTAATAATAAGGTT 59.353 36.000 27.15 0.00 0.00 3.50
8201 8631 5.967088 CGGCCGTGTTTTAATAATAAGGTTC 59.033 40.000 19.50 0.00 0.00 3.62
8202 8632 6.183360 CGGCCGTGTTTTAATAATAAGGTTCT 60.183 38.462 19.50 0.00 0.00 3.01
8203 8633 6.970613 GGCCGTGTTTTAATAATAAGGTTCTG 59.029 38.462 0.00 0.00 0.00 3.02
8204 8634 6.471198 GCCGTGTTTTAATAATAAGGTTCTGC 59.529 38.462 0.00 0.00 0.00 4.26
8205 8635 6.970613 CCGTGTTTTAATAATAAGGTTCTGCC 59.029 38.462 0.00 0.00 37.58 4.85
8206 8636 6.970613 CGTGTTTTAATAATAAGGTTCTGCCC 59.029 38.462 0.00 0.00 38.26 5.36
8207 8637 7.262772 GTGTTTTAATAATAAGGTTCTGCCCC 58.737 38.462 0.00 0.00 38.26 5.80
8208 8638 6.954684 TGTTTTAATAATAAGGTTCTGCCCCA 59.045 34.615 0.00 0.00 38.26 4.96
8209 8639 7.123547 TGTTTTAATAATAAGGTTCTGCCCCAG 59.876 37.037 0.00 0.00 38.26 4.45
8210 8640 2.729028 TAATAAGGTTCTGCCCCAGC 57.271 50.000 0.00 0.00 38.26 4.85
8211 8641 0.394352 AATAAGGTTCTGCCCCAGCG 60.394 55.000 0.00 0.00 44.31 5.18
8212 8642 2.893682 ATAAGGTTCTGCCCCAGCGC 62.894 60.000 0.00 0.00 44.31 5.92
8395 8825 3.747976 GCTTTTGGATGGCGGCGT 61.748 61.111 9.37 2.02 0.00 5.68
8694 9130 4.769688 CTGTGTTCCTATGTCATTGGCTA 58.230 43.478 8.31 0.00 0.00 3.93
8751 9187 1.457303 CGAAAGTCTTGCACCTTCTCG 59.543 52.381 0.00 0.00 0.00 4.04
8796 9232 3.861276 TCTTGAGCATTGCATTCCTTG 57.139 42.857 11.91 0.00 0.00 3.61
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 3.313526 GGTCACTACCGCGTATCTTTCTA 59.686 47.826 4.92 0.00 35.62 2.10
37 38 2.457970 GGTCACTACCGCGTATCTTTC 58.542 52.381 4.92 0.00 35.62 2.62
38 39 2.573941 GGTCACTACCGCGTATCTTT 57.426 50.000 4.92 0.00 35.62 2.52
50 51 7.147655 CCTTATTCCATCTTCAAGAGGTCACTA 60.148 40.741 0.00 0.00 0.00 2.74
51 52 6.352565 CCTTATTCCATCTTCAAGAGGTCACT 60.353 42.308 0.00 0.00 0.00 3.41
53 54 5.488919 ACCTTATTCCATCTTCAAGAGGTCA 59.511 40.000 0.00 0.00 29.42 4.02
57 59 7.281999 GGAAGAACCTTATTCCATCTTCAAGAG 59.718 40.741 13.81 0.00 45.49 2.85
84 86 3.732938 CCAGAACTGGGCTAGGCT 58.267 61.111 16.80 0.00 46.81 4.58
94 96 2.157738 GCTTGAAGCATCACCAGAACT 58.842 47.619 13.09 0.00 41.89 3.01
97 100 0.035317 ACGCTTGAAGCATCACCAGA 59.965 50.000 18.22 0.00 42.58 3.86
107 110 0.593128 CCCTCCAACAACGCTTGAAG 59.407 55.000 5.01 0.00 0.00 3.02
115 118 2.551912 CCACACGCCCTCCAACAAC 61.552 63.158 0.00 0.00 0.00 3.32
120 123 4.954118 ACCTCCACACGCCCTCCA 62.954 66.667 0.00 0.00 0.00 3.86
124 127 2.203294 AAACACCTCCACACGCCC 60.203 61.111 0.00 0.00 0.00 6.13
138 141 1.589196 CGAGATCCGCCGGAGAAAC 60.589 63.158 13.12 3.15 34.05 2.78
140 143 2.439701 ACGAGATCCGCCGGAGAA 60.440 61.111 13.12 0.00 43.32 2.87
163 166 3.126171 CACAAAAGACAAACACCGACTGA 59.874 43.478 0.00 0.00 0.00 3.41
165 168 2.422127 CCACAAAAGACAAACACCGACT 59.578 45.455 0.00 0.00 0.00 4.18
192 195 0.828022 ACATAAGCGAACCGGATCCA 59.172 50.000 9.46 0.00 0.00 3.41
193 196 1.068741 AGACATAAGCGAACCGGATCC 59.931 52.381 9.46 0.00 0.00 3.36
194 197 2.128035 CAGACATAAGCGAACCGGATC 58.872 52.381 9.46 4.52 0.00 3.36
195 198 1.480954 ACAGACATAAGCGAACCGGAT 59.519 47.619 9.46 0.00 0.00 4.18
196 199 0.892755 ACAGACATAAGCGAACCGGA 59.107 50.000 9.46 0.00 0.00 5.14
197 200 0.999406 CACAGACATAAGCGAACCGG 59.001 55.000 0.00 0.00 0.00 5.28
198 201 1.390123 CACACAGACATAAGCGAACCG 59.610 52.381 0.00 0.00 0.00 4.44
199 202 2.413837 ACACACAGACATAAGCGAACC 58.586 47.619 0.00 0.00 0.00 3.62
205 216 3.565482 ACCTGCAAACACACAGACATAAG 59.435 43.478 0.00 0.00 35.90 1.73
206 217 3.550820 ACCTGCAAACACACAGACATAA 58.449 40.909 0.00 0.00 35.90 1.90
209 220 1.472082 CAACCTGCAAACACACAGACA 59.528 47.619 0.00 0.00 35.90 3.41
220 231 1.704628 TCAGAAGGATCCAACCTGCAA 59.295 47.619 15.82 0.47 40.49 4.08
238 249 5.414360 GCCGATGAAGAGAAGCATATATCA 58.586 41.667 0.00 0.00 0.00 2.15
240 251 4.158579 TCGCCGATGAAGAGAAGCATATAT 59.841 41.667 0.00 0.00 0.00 0.86
242 253 2.297315 TCGCCGATGAAGAGAAGCATAT 59.703 45.455 0.00 0.00 0.00 1.78
265 276 0.034059 AGCGCACTAGAACAGCAACT 59.966 50.000 11.47 0.00 0.00 3.16
277 288 2.735772 CCCATAGGACCAGCGCACT 61.736 63.158 11.47 1.70 33.47 4.40
302 313 0.452987 CGGTCGGGAAGTCATCGTAA 59.547 55.000 0.00 0.00 0.00 3.18
303 314 0.677731 ACGGTCGGGAAGTCATCGTA 60.678 55.000 0.00 0.00 0.00 3.43
308 319 2.203523 TGGACGGTCGGGAAGTCA 60.204 61.111 1.43 0.00 36.68 3.41
320 331 3.296628 GCAAACATTGTTGTAGTGGACG 58.703 45.455 2.13 0.00 34.06 4.79
324 335 2.606795 CCGGGCAAACATTGTTGTAGTG 60.607 50.000 2.13 0.00 34.06 2.74
356 367 4.227134 CGCCCTCATCACCCCTCG 62.227 72.222 0.00 0.00 0.00 4.63
363 374 2.520465 AATGTGCGTCGCCCTCATCA 62.520 55.000 15.88 4.94 0.00 3.07
374 385 2.669569 AGCAAGCCGAATGTGCGT 60.670 55.556 0.00 0.00 43.16 5.24
378 389 0.957395 CACTGGAGCAAGCCGAATGT 60.957 55.000 0.00 0.00 0.00 2.71
380 391 2.042831 GCACTGGAGCAAGCCGAAT 61.043 57.895 0.00 0.00 0.00 3.34
388 399 1.047801 TGACTACAAGCACTGGAGCA 58.952 50.000 0.00 0.00 40.05 4.26
407 418 4.699735 CAGGTCTGTAGATCATCTAGCGAT 59.300 45.833 0.00 0.00 28.01 4.58
465 476 6.760298 TCTGATCTAGTCATCAATTGTGAAGC 59.240 38.462 5.13 0.00 37.30 3.86
469 480 8.489990 AACTTCTGATCTAGTCATCAATTGTG 57.510 34.615 5.13 3.68 35.97 3.33
481 492 9.193133 TGTTTTTACGAGAAACTTCTGATCTAG 57.807 33.333 0.00 0.00 37.73 2.43
488 499 6.260271 CCCTCTTGTTTTTACGAGAAACTTCT 59.740 38.462 11.87 0.00 41.00 2.85
496 507 4.755123 ACATGTCCCTCTTGTTTTTACGAG 59.245 41.667 0.00 0.00 31.71 4.18
497 508 4.710324 ACATGTCCCTCTTGTTTTTACGA 58.290 39.130 0.00 0.00 31.71 3.43
498 509 4.513692 TGACATGTCCCTCTTGTTTTTACG 59.486 41.667 22.85 0.00 35.12 3.18
499 510 6.381801 CATGACATGTCCCTCTTGTTTTTAC 58.618 40.000 22.85 0.00 35.12 2.01
500 511 5.048083 GCATGACATGTCCCTCTTGTTTTTA 60.048 40.000 22.85 0.00 35.12 1.52
501 512 4.262164 GCATGACATGTCCCTCTTGTTTTT 60.262 41.667 22.85 0.00 35.12 1.94
502 513 3.256631 GCATGACATGTCCCTCTTGTTTT 59.743 43.478 22.85 0.00 35.12 2.43
503 514 2.821969 GCATGACATGTCCCTCTTGTTT 59.178 45.455 22.85 0.00 35.12 2.83
504 515 2.040813 AGCATGACATGTCCCTCTTGTT 59.959 45.455 22.85 8.08 35.12 2.83
505 516 1.632409 AGCATGACATGTCCCTCTTGT 59.368 47.619 22.85 0.00 37.18 3.16
506 517 2.414994 AGCATGACATGTCCCTCTTG 57.585 50.000 22.85 12.90 0.00 3.02
507 518 2.840038 TGTAGCATGACATGTCCCTCTT 59.160 45.455 22.85 7.65 0.00 2.85
508 519 2.169352 GTGTAGCATGACATGTCCCTCT 59.831 50.000 22.85 17.15 0.00 3.69
509 520 2.093500 TGTGTAGCATGACATGTCCCTC 60.093 50.000 22.85 11.17 0.00 4.30
510 521 1.908619 TGTGTAGCATGACATGTCCCT 59.091 47.619 22.85 17.25 0.00 4.20
511 522 2.009774 GTGTGTAGCATGACATGTCCC 58.990 52.381 22.85 11.20 0.00 4.46
512 523 2.698803 TGTGTGTAGCATGACATGTCC 58.301 47.619 22.85 7.89 0.00 4.02
513 524 6.092670 AGTTTATGTGTGTAGCATGACATGTC 59.907 38.462 19.27 19.27 31.56 3.06
514 525 5.939883 AGTTTATGTGTGTAGCATGACATGT 59.060 36.000 16.62 0.00 31.56 3.21
515 526 6.092533 TCAGTTTATGTGTGTAGCATGACATG 59.907 38.462 11.27 11.27 31.56 3.21
516 527 6.092670 GTCAGTTTATGTGTGTAGCATGACAT 59.907 38.462 0.00 0.00 33.64 3.06
517 528 5.408299 GTCAGTTTATGTGTGTAGCATGACA 59.592 40.000 0.00 0.00 0.00 3.58
518 529 5.408299 TGTCAGTTTATGTGTGTAGCATGAC 59.592 40.000 0.00 0.00 0.00 3.06
519 530 5.546526 TGTCAGTTTATGTGTGTAGCATGA 58.453 37.500 0.00 0.00 0.00 3.07
520 531 5.861222 TGTCAGTTTATGTGTGTAGCATG 57.139 39.130 0.00 0.00 0.00 4.06
521 532 5.163723 GCATGTCAGTTTATGTGTGTAGCAT 60.164 40.000 0.00 0.00 0.00 3.79
522 533 4.154015 GCATGTCAGTTTATGTGTGTAGCA 59.846 41.667 0.00 0.00 0.00 3.49
523 534 4.393062 AGCATGTCAGTTTATGTGTGTAGC 59.607 41.667 0.00 0.00 0.00 3.58
524 535 5.871524 AGAGCATGTCAGTTTATGTGTGTAG 59.128 40.000 0.00 0.00 0.00 2.74
525 536 5.793817 AGAGCATGTCAGTTTATGTGTGTA 58.206 37.500 0.00 0.00 0.00 2.90
526 537 4.645535 AGAGCATGTCAGTTTATGTGTGT 58.354 39.130 0.00 0.00 0.00 3.72
527 538 6.101997 TCTAGAGCATGTCAGTTTATGTGTG 58.898 40.000 0.00 0.00 0.00 3.82
528 539 6.286240 TCTAGAGCATGTCAGTTTATGTGT 57.714 37.500 0.00 0.00 0.00 3.72
529 540 9.486497 AATATCTAGAGCATGTCAGTTTATGTG 57.514 33.333 0.00 0.00 0.00 3.21
582 593 6.038382 TCAAAACTACGTACAGATGGCAAAAA 59.962 34.615 0.00 0.00 0.00 1.94
583 594 5.527951 TCAAAACTACGTACAGATGGCAAAA 59.472 36.000 0.00 0.00 0.00 2.44
584 595 5.057819 TCAAAACTACGTACAGATGGCAAA 58.942 37.500 0.00 0.00 0.00 3.68
585 596 4.633175 TCAAAACTACGTACAGATGGCAA 58.367 39.130 0.00 0.00 0.00 4.52
586 597 4.242475 CTCAAAACTACGTACAGATGGCA 58.758 43.478 0.00 0.00 0.00 4.92
587 598 3.617263 CCTCAAAACTACGTACAGATGGC 59.383 47.826 0.00 0.00 0.00 4.40
588 599 4.081862 TCCCTCAAAACTACGTACAGATGG 60.082 45.833 0.00 0.00 0.00 3.51
589 600 5.068234 TCCCTCAAAACTACGTACAGATG 57.932 43.478 0.00 0.00 0.00 2.90
590 601 5.014858 TCTCCCTCAAAACTACGTACAGAT 58.985 41.667 0.00 0.00 0.00 2.90
591 602 4.401022 TCTCCCTCAAAACTACGTACAGA 58.599 43.478 0.00 0.00 0.00 3.41
592 603 4.380655 CCTCTCCCTCAAAACTACGTACAG 60.381 50.000 0.00 0.00 0.00 2.74
593 604 3.508793 CCTCTCCCTCAAAACTACGTACA 59.491 47.826 0.00 0.00 0.00 2.90
594 605 3.119209 CCCTCTCCCTCAAAACTACGTAC 60.119 52.174 0.00 0.00 0.00 3.67
595 606 3.094572 CCCTCTCCCTCAAAACTACGTA 58.905 50.000 0.00 0.00 0.00 3.57
596 607 1.900486 CCCTCTCCCTCAAAACTACGT 59.100 52.381 0.00 0.00 0.00 3.57
597 608 1.207329 CCCCTCTCCCTCAAAACTACG 59.793 57.143 0.00 0.00 0.00 3.51
598 609 1.560146 CCCCCTCTCCCTCAAAACTAC 59.440 57.143 0.00 0.00 0.00 2.73
599 610 1.439543 TCCCCCTCTCCCTCAAAACTA 59.560 52.381 0.00 0.00 0.00 2.24
600 611 0.196118 TCCCCCTCTCCCTCAAAACT 59.804 55.000 0.00 0.00 0.00 2.66
601 612 0.621082 CTCCCCCTCTCCCTCAAAAC 59.379 60.000 0.00 0.00 0.00 2.43
602 613 0.550147 CCTCCCCCTCTCCCTCAAAA 60.550 60.000 0.00 0.00 0.00 2.44
603 614 1.082954 CCTCCCCCTCTCCCTCAAA 59.917 63.158 0.00 0.00 0.00 2.69
604 615 2.787866 CCTCCCCCTCTCCCTCAA 59.212 66.667 0.00 0.00 0.00 3.02
605 616 3.368501 CCCTCCCCCTCTCCCTCA 61.369 72.222 0.00 0.00 0.00 3.86
606 617 4.179599 CCCCTCCCCCTCTCCCTC 62.180 77.778 0.00 0.00 0.00 4.30
607 618 4.761304 TCCCCTCCCCCTCTCCCT 62.761 72.222 0.00 0.00 0.00 4.20
608 619 4.179599 CTCCCCTCCCCCTCTCCC 62.180 77.778 0.00 0.00 0.00 4.30
609 620 1.600763 TTACTCCCCTCCCCCTCTCC 61.601 65.000 0.00 0.00 0.00 3.71
610 621 0.342313 TTTACTCCCCTCCCCCTCTC 59.658 60.000 0.00 0.00 0.00 3.20
611 622 0.343726 CTTTACTCCCCTCCCCCTCT 59.656 60.000 0.00 0.00 0.00 3.69
612 623 0.694783 CCTTTACTCCCCTCCCCCTC 60.695 65.000 0.00 0.00 0.00 4.30
613 624 1.400711 CCTTTACTCCCCTCCCCCT 59.599 63.158 0.00 0.00 0.00 4.79
614 625 1.696674 CCCTTTACTCCCCTCCCCC 60.697 68.421 0.00 0.00 0.00 5.40
615 626 0.028955 ATCCCTTTACTCCCCTCCCC 60.029 60.000 0.00 0.00 0.00 4.81
619 630 3.306613 CGTCTTATCCCTTTACTCCCCT 58.693 50.000 0.00 0.00 0.00 4.79
633 644 0.796312 CAACACAAGGCGCGTCTTAT 59.204 50.000 27.52 13.45 0.00 1.73
639 650 2.051345 GGAACAACACAAGGCGCG 60.051 61.111 0.00 0.00 0.00 6.86
643 654 4.380867 GCAATATGAGGGAACAACACAAGG 60.381 45.833 0.00 0.00 0.00 3.61
684 696 2.284952 TGCGCGAATGATACATGACAAG 59.715 45.455 12.10 0.00 0.00 3.16
694 706 0.805711 TGATCGTGTGCGCGAATGAT 60.806 50.000 12.10 14.63 44.38 2.45
706 718 4.934075 ATCTGTGATGTGTTTGATCGTG 57.066 40.909 0.00 0.00 0.00 4.35
709 721 7.688372 ACGAATAATCTGTGATGTGTTTGATC 58.312 34.615 0.00 0.00 0.00 2.92
710 722 7.615582 ACGAATAATCTGTGATGTGTTTGAT 57.384 32.000 0.00 0.00 0.00 2.57
728 740 4.393680 CGGGAATGGTTTTCTGAACGAATA 59.606 41.667 0.00 0.00 0.00 1.75
754 766 3.106672 CTGTTATAGAGCGACCACGTTC 58.893 50.000 0.00 0.00 46.93 3.95
756 768 2.089980 ACTGTTATAGAGCGACCACGT 58.910 47.619 0.00 0.00 41.98 4.49
757 769 2.846039 ACTGTTATAGAGCGACCACG 57.154 50.000 0.00 0.00 42.93 4.94
759 771 3.508402 TGTCAACTGTTATAGAGCGACCA 59.492 43.478 0.00 0.00 0.00 4.02
760 772 4.106029 TGTCAACTGTTATAGAGCGACC 57.894 45.455 0.00 0.00 0.00 4.79
761 773 6.462073 TTTTGTCAACTGTTATAGAGCGAC 57.538 37.500 0.00 0.00 0.00 5.19
794 806 7.758076 TCTCATATAAAGTCGTCAACATTTCGT 59.242 33.333 0.00 0.00 0.00 3.85
847 860 6.389830 AATGTCAAATGTTTGCTAGTGACA 57.610 33.333 10.00 10.00 46.59 3.58
872 885 4.517952 TGCCACACCAACAATATTTGAG 57.482 40.909 0.00 0.00 0.00 3.02
964 990 0.735978 CGCTGCTGTGTGGAACGATA 60.736 55.000 0.00 0.00 42.39 2.92
968 994 2.959357 GAGCGCTGCTGTGTGGAAC 61.959 63.158 18.48 0.00 39.88 3.62
970 996 3.871248 CTGAGCGCTGCTGTGTGGA 62.871 63.158 18.48 0.00 39.88 4.02
984 1010 4.463879 CCCCTGTGAGCGGCTGAG 62.464 72.222 7.50 0.00 0.00 3.35
989 1015 0.323629 TACTTTTCCCCTGTGAGCGG 59.676 55.000 0.00 0.00 0.00 5.52
1002 1036 3.442625 GCGGCTGATAGGGTTTTACTTTT 59.557 43.478 0.00 0.00 0.00 2.27
1348 1385 4.814294 GACCGGAACTGCGGCGAT 62.814 66.667 12.98 0.00 0.00 4.58
1480 1517 0.310854 GCAACAACCACTGGCACTAC 59.689 55.000 0.00 0.00 0.00 2.73
1510 1547 6.318900 TCAAGAGCTCATATAGACAGAAACGA 59.681 38.462 17.77 0.00 0.00 3.85
1512 1549 8.885494 ATTCAAGAGCTCATATAGACAGAAAC 57.115 34.615 17.77 0.00 0.00 2.78
1519 1556 8.112822 AGTAGCCTATTCAAGAGCTCATATAGA 58.887 37.037 17.77 3.03 34.68 1.98
1529 1566 6.398234 TGCTTCTAGTAGCCTATTCAAGAG 57.602 41.667 17.59 0.00 40.49 2.85
1530 1567 6.985653 ATGCTTCTAGTAGCCTATTCAAGA 57.014 37.500 17.59 0.00 40.49 3.02
1573 1615 3.754955 TGACTAAATAGCGACGACACAG 58.245 45.455 0.00 0.00 0.00 3.66
1620 1665 5.488341 TGATTTAACCTCACTGGCTAGAAC 58.512 41.667 3.17 0.00 40.22 3.01
1627 1672 4.256920 CTGACCTGATTTAACCTCACTGG 58.743 47.826 0.00 0.00 42.93 4.00
1646 1691 7.648177 AAATATCCTAGCCCTAAATTCCTGA 57.352 36.000 0.00 0.00 0.00 3.86
1667 1712 8.992073 CCAAGCTATTGAAAAGTAAAGCAAAAT 58.008 29.630 0.00 0.00 38.83 1.82
1672 1717 7.145323 TGAACCAAGCTATTGAAAAGTAAAGC 58.855 34.615 0.00 0.00 38.83 3.51
1724 1769 3.496884 GCTACAACAAAATCGTGGAGACA 59.503 43.478 0.00 0.00 38.70 3.41
1778 1824 4.802918 GCAGGCAGTCTTTAACCTTGTCTA 60.803 45.833 0.00 0.00 0.00 2.59
1796 1842 1.093159 CAATCCTCAACTCTGCAGGC 58.907 55.000 15.13 0.00 0.00 4.85
1817 1863 4.178956 AGTTCTTGTTCTAAAAGGGCCA 57.821 40.909 6.18 0.00 0.00 5.36
1837 1884 9.988815 ACTTGCTTATTATTGACAGGAGTATAG 57.011 33.333 0.00 0.00 0.00 1.31
1848 1895 9.995003 ATTTTCACCAAACTTGCTTATTATTGA 57.005 25.926 0.00 0.00 0.00 2.57
1887 1935 5.163713 GCACTTGTATCCCTTTCTTAAGCTG 60.164 44.000 0.00 0.00 0.00 4.24
1892 1940 4.534500 TCCTGCACTTGTATCCCTTTCTTA 59.466 41.667 0.00 0.00 0.00 2.10
1923 1971 1.270839 GCACAAGTCTTGAGCTACCCA 60.271 52.381 22.99 0.00 42.78 4.51
2008 2056 8.922931 AAATTTTCAAAGCATCTAAAACCCAT 57.077 26.923 0.00 0.00 0.00 4.00
2062 2110 2.099141 TGGAATGAAGAGCGGAACAG 57.901 50.000 0.00 0.00 0.00 3.16
2114 2162 2.801631 CCCGGCCAGTCAGAGATCC 61.802 68.421 2.24 0.00 0.00 3.36
2129 2177 2.781681 ATTGGTGAGTTAGTTCCCCG 57.218 50.000 0.00 0.00 0.00 5.73
2236 2284 3.788227 TGCTCTGATTTGGGTAGTTGT 57.212 42.857 0.00 0.00 0.00 3.32
2237 2285 4.264253 TCATGCTCTGATTTGGGTAGTTG 58.736 43.478 0.00 0.00 0.00 3.16
2238 2286 4.574674 TCATGCTCTGATTTGGGTAGTT 57.425 40.909 0.00 0.00 0.00 2.24
2342 2397 1.043022 CTGGTTTGCTGGCTCCTTTT 58.957 50.000 0.00 0.00 0.00 2.27
2378 2433 2.499289 TCACAAAGGTGCATGGTTGTTT 59.501 40.909 8.59 0.00 44.87 2.83
2411 2466 1.209019 CTCCTTGACCTGGTCCTCATG 59.791 57.143 23.42 8.38 0.00 3.07
2495 2551 4.468643 CTCTGACGAGTCTACAAGTTGAC 58.531 47.826 10.54 6.68 35.96 3.18
2533 2589 2.364970 CCTTTTTCATGGTCAGTGGCAA 59.635 45.455 0.00 0.00 0.00 4.52
2588 2645 4.575645 ACCAATGGTTCAATTTGCACAAAG 59.424 37.500 0.00 0.00 29.42 2.77
2692 2763 1.805943 TCCAACGACGATAACGAGTGA 59.194 47.619 0.00 0.00 42.66 3.41
2720 2791 4.855715 TCATAACGGGCACAAATTTCAA 57.144 36.364 0.00 0.00 0.00 2.69
2723 2794 6.872920 ACATATTCATAACGGGCACAAATTT 58.127 32.000 0.00 0.00 0.00 1.82
2812 2883 5.821204 ACAATTCTTCGTCAACTTTGAAGG 58.179 37.500 5.27 0.00 39.59 3.46
2813 2884 5.909610 GGACAATTCTTCGTCAACTTTGAAG 59.090 40.000 0.00 0.00 39.21 3.02
2815 2886 4.025229 CGGACAATTCTTCGTCAACTTTGA 60.025 41.667 0.00 0.00 33.66 2.69
2816 2887 4.211389 CGGACAATTCTTCGTCAACTTTG 58.789 43.478 0.00 0.00 33.66 2.77
2817 2888 3.303791 GCGGACAATTCTTCGTCAACTTT 60.304 43.478 0.00 0.00 33.66 2.66
2819 2890 1.798813 GCGGACAATTCTTCGTCAACT 59.201 47.619 0.00 0.00 33.66 3.16
2820 2891 1.529438 TGCGGACAATTCTTCGTCAAC 59.471 47.619 0.00 0.00 33.66 3.18
2821 2892 1.872388 TGCGGACAATTCTTCGTCAA 58.128 45.000 0.00 0.00 33.66 3.18
2822 2893 2.093306 ATGCGGACAATTCTTCGTCA 57.907 45.000 0.00 0.00 33.66 4.35
2823 2894 3.471495 AAATGCGGACAATTCTTCGTC 57.529 42.857 0.00 0.00 0.00 4.20
2824 2895 3.126343 GGTAAATGCGGACAATTCTTCGT 59.874 43.478 0.00 0.00 0.00 3.85
2825 2896 3.126171 TGGTAAATGCGGACAATTCTTCG 59.874 43.478 0.00 0.00 0.00 3.79
2826 2897 4.695217 TGGTAAATGCGGACAATTCTTC 57.305 40.909 0.00 0.00 0.00 2.87
2867 2961 4.881019 ACAGTGCATGATATACTCCCTC 57.119 45.455 0.00 0.00 0.00 4.30
2868 2962 6.259893 AGATACAGTGCATGATATACTCCCT 58.740 40.000 0.00 0.00 0.00 4.20
2869 2963 6.537453 AGATACAGTGCATGATATACTCCC 57.463 41.667 0.00 0.00 0.00 4.30
2870 2964 9.526713 CAATAGATACAGTGCATGATATACTCC 57.473 37.037 0.00 0.00 0.00 3.85
2875 2969 9.783081 TTGAACAATAGATACAGTGCATGATAT 57.217 29.630 0.00 0.00 0.00 1.63
2876 2970 9.783081 ATTGAACAATAGATACAGTGCATGATA 57.217 29.630 0.00 0.00 0.00 2.15
2877 2971 8.687292 ATTGAACAATAGATACAGTGCATGAT 57.313 30.769 0.00 0.00 0.00 2.45
2878 2972 8.510243 AATTGAACAATAGATACAGTGCATGA 57.490 30.769 0.00 0.00 0.00 3.07
2879 2973 9.577110 AAAATTGAACAATAGATACAGTGCATG 57.423 29.630 0.00 0.00 0.00 4.06
2880 2974 9.793252 GAAAATTGAACAATAGATACAGTGCAT 57.207 29.630 0.00 0.00 0.00 3.96
2881 2975 9.013229 AGAAAATTGAACAATAGATACAGTGCA 57.987 29.630 0.37 0.00 0.00 4.57
2882 2976 9.846248 AAGAAAATTGAACAATAGATACAGTGC 57.154 29.630 0.37 0.00 0.00 4.40
2909 3003 4.586421 TGCACAATATGGGTCAACAAAGAA 59.414 37.500 0.00 0.00 0.00 2.52
2984 3078 6.662865 TTGTATTGTTGTGAATGAATGGGT 57.337 33.333 0.00 0.00 0.00 4.51
3035 3144 3.738982 TCTTGGTTCAGCTCGAAATGAA 58.261 40.909 7.65 7.65 34.69 2.57
3062 3171 1.486310 AGCGTCCTTCCTGCATCAATA 59.514 47.619 0.00 0.00 0.00 1.90
3073 3182 3.124560 GGCTCAATTAGTAGCGTCCTTC 58.875 50.000 0.00 0.00 39.71 3.46
3112 3221 5.305644 GGTTCAGTATGTGACTCATCCCTAT 59.694 44.000 0.00 0.00 35.64 2.57
3314 3423 3.094572 CTGGACATTTCCTTCTTGCCAT 58.905 45.455 0.00 0.00 43.31 4.40
3403 3512 3.600388 CTTCCTACTGCCTGGTTTGTAG 58.400 50.000 12.57 12.57 34.02 2.74
3537 3646 0.813821 GGATTTTCACCTGCCTGCTC 59.186 55.000 0.00 0.00 0.00 4.26
3888 3997 0.252421 TCCTGCTCCATGTGGACTCT 60.252 55.000 0.00 0.00 39.78 3.24
3913 4022 1.739562 GGCTTGCAGACAGAGTCCG 60.740 63.158 0.00 0.00 32.18 4.79
3965 4074 8.263940 TGTTTTTCCTCTTACGATTTCCTATG 57.736 34.615 0.00 0.00 0.00 2.23
3967 4076 8.152246 TCTTGTTTTTCCTCTTACGATTTCCTA 58.848 33.333 0.00 0.00 0.00 2.94
4012 4121 1.219124 CTAAGCTGAGGCCGCTCAA 59.781 57.895 8.34 0.00 36.56 3.02
4141 4250 4.208047 GTGTTTGATCAGCTATGCTACTCG 59.792 45.833 0.00 0.00 36.40 4.18
4201 4310 4.063998 TGCTCATGCGATGAACTAGAAT 57.936 40.909 0.00 0.00 43.34 2.40
4500 4609 5.946377 GGGACATACTTTCAGGTGAAGAAAT 59.054 40.000 0.00 0.00 34.75 2.17
4905 5014 5.419760 AAGGTTTTCAAGCTAACGTTCTC 57.580 39.130 2.82 0.00 38.49 2.87
4925 5034 6.183360 GCCAACACCTTTTAACTGACAAAAAG 60.183 38.462 4.51 4.51 40.69 2.27
4975 5084 8.663911 CATGAAACATTAACACAAAACCAAAGT 58.336 29.630 0.00 0.00 0.00 2.66
5082 5191 2.357836 CAGAAGGGCATGCAGGGT 59.642 61.111 21.36 0.45 0.00 4.34
5172 5282 0.036164 TGGCTGTCGCTACAAACCAT 59.964 50.000 8.29 0.00 37.12 3.55
5216 5326 2.167662 TGATGAGTCCTACGACAAGCA 58.832 47.619 0.00 0.00 41.87 3.91
5219 5329 2.357952 CCGATGATGAGTCCTACGACAA 59.642 50.000 0.00 0.00 41.87 3.18
5235 5345 1.740025 GAGGAAAGACAAAGGCCGATG 59.260 52.381 9.03 9.03 0.00 3.84
5243 5353 3.625764 CAGAAACCACGAGGAAAGACAAA 59.374 43.478 5.68 0.00 38.69 2.83
5332 5442 4.145052 GACCAACAGACCTTTGAGGAAAT 58.855 43.478 0.07 0.00 37.67 2.17
5442 5553 1.152567 CCTTTGGTGTGCCTTCCCA 60.153 57.895 0.00 0.00 35.27 4.37
5445 5556 1.692411 AGAACCTTTGGTGTGCCTTC 58.308 50.000 0.00 0.00 35.34 3.46
5486 5597 5.133221 ACACCTCTTGCAAAAGTTACATCT 58.867 37.500 0.00 0.00 0.00 2.90
5557 5668 4.654091 TGCTCGATATCAGACAATCACA 57.346 40.909 3.12 0.00 0.00 3.58
5670 5781 1.205064 CAGCTTCTTCGCGTGGTTG 59.795 57.895 5.77 0.00 34.40 3.77
5747 5858 1.763968 TCAGTTCTCCGACCATCGAT 58.236 50.000 0.00 0.00 43.74 3.59
5768 5879 7.698506 AATTGACACATGAAGATCAGAATGT 57.301 32.000 0.00 0.00 37.40 2.71
6046 6157 5.902613 TCAAATGACAGGAAATCATCACC 57.097 39.130 0.00 0.00 35.72 4.02
6614 6725 1.047596 TCTCTGGCCTCCTCAGCATC 61.048 60.000 3.32 0.00 32.63 3.91
6668 6779 3.311110 ACGCTTCGAGCTCCCCAA 61.311 61.111 8.47 0.00 39.60 4.12
6829 6940 3.305608 CCCAAGTTTCATTCAGTCCTTGC 60.306 47.826 0.00 0.00 0.00 4.01
7033 7149 2.339400 CGTGAAATTTGACATCGCTTGC 59.661 45.455 8.53 0.00 0.00 4.01
7130 7246 6.847036 AGCTACTTTCCTCCCTTGAATATACT 59.153 38.462 0.00 0.00 0.00 2.12
7145 7261 3.274288 CACCCATCAGAAGCTACTTTCC 58.726 50.000 0.00 0.00 0.00 3.13
7185 7304 3.191669 CGTATACATGCGAGAAAACCCA 58.808 45.455 3.32 0.00 38.16 4.51
7204 7323 1.808411 CAATACTTGGGTGCAGACGT 58.192 50.000 0.00 0.00 0.00 4.34
7276 7574 4.887748 AGATGACGGTAGCATTAGATTGG 58.112 43.478 0.00 0.00 0.00 3.16
7294 7592 6.824305 ACCACCAATCAACTTAGAAAGATG 57.176 37.500 0.00 0.00 33.07 2.90
7295 7593 6.209391 CCAACCACCAATCAACTTAGAAAGAT 59.791 38.462 0.00 0.00 0.00 2.40
7301 7599 4.141287 TCACCAACCACCAATCAACTTAG 58.859 43.478 0.00 0.00 0.00 2.18
7351 7711 6.538021 TGGTTCATGGTTTCTGTTTCATTTTG 59.462 34.615 0.00 0.00 0.00 2.44
7407 7769 6.608405 TGATGATTTTGCCCAGTCTCAATATT 59.392 34.615 0.00 0.00 0.00 1.28
7415 7779 4.724074 TCAATGATGATTTTGCCCAGTC 57.276 40.909 0.00 0.00 0.00 3.51
7420 7784 7.223387 GGTGAATAGTTCAATGATGATTTTGCC 59.777 37.037 0.00 0.00 42.15 4.52
7421 7785 7.760794 TGGTGAATAGTTCAATGATGATTTTGC 59.239 33.333 0.00 0.00 42.15 3.68
7430 7801 9.764363 GTATACATCTGGTGAATAGTTCAATGA 57.236 33.333 0.00 2.69 42.15 2.57
7472 7853 3.376234 CCAGAGTATCACAAGTTGCATGG 59.624 47.826 1.81 0.00 37.82 3.66
7479 7860 2.371841 TGGCAACCAGAGTATCACAAGT 59.628 45.455 0.00 0.00 37.82 3.16
7501 7882 2.115343 ACCCAGCGGAAGAAAGAATC 57.885 50.000 0.00 0.00 0.00 2.52
7503 7884 2.227194 GAAACCCAGCGGAAGAAAGAA 58.773 47.619 0.00 0.00 0.00 2.52
7504 7885 1.876416 CGAAACCCAGCGGAAGAAAGA 60.876 52.381 0.00 0.00 0.00 2.52
7505 7886 0.517316 CGAAACCCAGCGGAAGAAAG 59.483 55.000 0.00 0.00 0.00 2.62
7506 7887 1.512156 GCGAAACCCAGCGGAAGAAA 61.512 55.000 0.00 0.00 0.00 2.52
7528 7909 3.140325 TGGGTGTGAAATCTTCTGTCC 57.860 47.619 0.00 0.00 0.00 4.02
7529 7910 4.082571 CCAATGGGTGTGAAATCTTCTGTC 60.083 45.833 0.00 0.00 0.00 3.51
7530 7911 3.828451 CCAATGGGTGTGAAATCTTCTGT 59.172 43.478 0.00 0.00 0.00 3.41
7545 7926 5.494724 CACTGGATAGATATGACCAATGGG 58.505 45.833 3.55 0.00 41.29 4.00
7580 7961 2.159282 GCATGGGCAAATTCAGAGACAG 60.159 50.000 0.00 0.00 40.72 3.51
7601 7988 1.680651 AGTCTGGACTGGAGAGCGG 60.681 63.158 2.15 0.00 40.75 5.52
7631 8018 1.395608 CGTGAAACCGTGTCAGTTTGT 59.604 47.619 0.00 0.00 37.55 2.83
7693 8096 0.179161 CGCCGTCGTCTTGATCTTCT 60.179 55.000 0.00 0.00 0.00 2.85
7701 8104 4.117661 GCTCCTCGCCGTCGTCTT 62.118 66.667 0.00 0.00 36.96 3.01
7728 8131 1.053424 TTGGGTCTAACTCCAACGCT 58.947 50.000 0.00 0.00 38.04 5.07
7853 8268 6.581388 TGATCTATCTGGTCAAAGGGATTT 57.419 37.500 0.00 0.00 0.00 2.17
7901 8317 0.523966 CGGAGAAGCGAGTTCAGAGT 59.476 55.000 0.00 0.00 37.67 3.24
8039 8469 4.651008 GTTGCCCACGACGGACGA 62.651 66.667 6.90 0.00 45.77 4.20
8080 8510 4.351054 AGAAACCGGGGCAGGCAG 62.351 66.667 6.32 0.00 33.69 4.85
8081 8511 4.344865 GAGAAACCGGGGCAGGCA 62.345 66.667 6.32 0.00 33.69 4.75
8082 8512 4.035102 AGAGAAACCGGGGCAGGC 62.035 66.667 6.32 0.00 33.69 4.85
8083 8513 2.045926 CAGAGAAACCGGGGCAGG 60.046 66.667 6.32 0.00 37.30 4.85
8084 8514 2.747855 GCAGAGAAACCGGGGCAG 60.748 66.667 6.32 0.00 0.00 4.85
8085 8515 3.551496 CTGCAGAGAAACCGGGGCA 62.551 63.158 8.42 2.81 0.00 5.36
8097 8527 1.669115 GCGAACAGGAAGCTGCAGA 60.669 57.895 20.43 0.00 0.00 4.26
8103 8533 1.618640 GACACGAGCGAACAGGAAGC 61.619 60.000 0.00 0.00 0.00 3.86
8105 8535 1.371267 CGACACGAGCGAACAGGAA 60.371 57.895 0.00 0.00 0.00 3.36
8129 8559 4.389576 CAACAAGACCGCGGCAGC 62.390 66.667 28.58 15.58 40.74 5.25
8130 8560 4.389576 GCAACAAGACCGCGGCAG 62.390 66.667 28.58 15.24 0.00 4.85
8132 8562 4.389576 CTGCAACAAGACCGCGGC 62.390 66.667 28.58 18.62 0.00 6.53
8133 8563 0.739462 TATCTGCAACAAGACCGCGG 60.739 55.000 26.86 26.86 0.00 6.46
8134 8564 1.075542 TTATCTGCAACAAGACCGCG 58.924 50.000 0.00 0.00 0.00 6.46
8135 8565 3.552604 TTTTATCTGCAACAAGACCGC 57.447 42.857 0.00 0.00 0.00 5.68
8136 8566 6.912591 GGATTATTTTATCTGCAACAAGACCG 59.087 38.462 0.00 0.00 0.00 4.79
8143 8573 4.219033 CGCCGGATTATTTTATCTGCAAC 58.781 43.478 5.05 0.00 30.92 4.17
8178 8608 6.970613 CAGAACCTTATTATTAAAACACGGCC 59.029 38.462 0.00 0.00 0.00 6.13
8188 8618 4.725490 GCTGGGGCAGAACCTTATTATTA 58.275 43.478 0.00 0.00 39.10 0.98
8194 8624 2.668632 CGCTGGGGCAGAACCTTA 59.331 61.111 0.00 0.00 39.10 2.69
8214 8644 4.901520 GATCGACGACGGCGGGAC 62.902 72.222 24.91 11.12 43.17 4.46
8216 8646 4.907034 CAGATCGACGACGGCGGG 62.907 72.222 24.91 6.64 43.17 6.13
8217 8647 4.907034 CCAGATCGACGACGGCGG 62.907 72.222 24.91 6.69 43.17 6.13
8349 8779 2.673523 GCCATCACCACAGCTCCT 59.326 61.111 0.00 0.00 0.00 3.69
8796 9232 3.869272 CCGCGATGTGCCTTCAGC 61.869 66.667 8.23 0.00 42.08 4.26
8900 9337 0.323629 TGCCTCCAAGAAGGTAACGG 59.676 55.000 0.00 0.00 46.39 4.44


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.