Multiple sequence alignment - TraesCS2B01G447600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G447600 chr2B 100.000 2787 0 0 1 2787 640491655 640488869 0.000000e+00 5147
1 TraesCS2B01G447600 chr2B 81.667 180 24 6 1066 1236 640378057 640377878 1.040000e-29 141
2 TraesCS2B01G447600 chr2B 93.333 90 6 0 275 364 24938852 24938763 1.740000e-27 134
3 TraesCS2B01G447600 chr2D 94.037 1459 68 11 349 1790 537706015 537704559 0.000000e+00 2194
4 TraesCS2B01G447600 chr2D 85.971 278 24 4 13 286 537706375 537706109 1.630000e-72 283
5 TraesCS2B01G447600 chr2D 86.175 217 26 4 2318 2532 537696781 537696567 6.000000e-57 231
6 TraesCS2B01G447600 chr2D 82.759 174 27 1 1066 1236 537524402 537524229 4.810000e-33 152
7 TraesCS2B01G447600 chr2D 91.579 95 6 2 279 373 631200068 631199976 2.250000e-26 130
8 TraesCS2B01G447600 chr2A 89.884 1384 86 19 777 2134 680097835 680096480 0.000000e+00 1731
9 TraesCS2B01G447600 chr2A 93.831 308 17 2 450 756 680098134 680097828 1.960000e-126 462
10 TraesCS2B01G447600 chr2A 85.204 196 26 3 2323 2516 680096287 680096093 6.090000e-47 198
11 TraesCS2B01G447600 chr2A 93.182 88 6 0 277 364 745406841 745406928 2.250000e-26 130
12 TraesCS2B01G447600 chr2A 86.792 106 13 1 273 377 9108622 9108517 1.750000e-22 117
13 TraesCS2B01G447600 chr2A 84.545 110 17 0 360 469 172732 172841 2.930000e-20 110
14 TraesCS2B01G447600 chr7B 94.444 90 5 0 276 365 28960705 28960794 3.740000e-29 139
15 TraesCS2B01G447600 chr6A 92.222 90 7 0 276 365 595071421 595071510 8.100000e-26 128
16 TraesCS2B01G447600 chr5A 90.722 97 7 2 276 370 471698481 471698385 8.100000e-26 128
17 TraesCS2B01G447600 chr4A 91.489 94 7 1 279 372 112585044 112585136 8.100000e-26 128
18 TraesCS2B01G447600 chr1A 89.796 98 10 0 273 370 13940184 13940281 2.910000e-25 126
19 TraesCS2B01G447600 chr6D 84.545 110 17 0 360 469 427170217 427170108 2.930000e-20 110
20 TraesCS2B01G447600 chr6D 82.727 110 19 0 360 469 137249359 137249250 6.350000e-17 99
21 TraesCS2B01G447600 chr6D 82.727 110 19 0 360 469 260364469 260364360 6.350000e-17 99
22 TraesCS2B01G447600 chrUn 82.727 110 19 0 360 469 27862616 27862725 6.350000e-17 99
23 TraesCS2B01G447600 chr4D 82.727 110 19 0 360 469 266599426 266599535 6.350000e-17 99
24 TraesCS2B01G447600 chr4D 82.727 110 19 0 360 469 338756745 338756854 6.350000e-17 99
25 TraesCS2B01G447600 chr1D 82.727 110 19 0 360 469 419515860 419515969 6.350000e-17 99


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G447600 chr2B 640488869 640491655 2786 True 5147.0 5147 100.000000 1 2787 1 chr2B.!!$R3 2786
1 TraesCS2B01G447600 chr2D 537704559 537706375 1816 True 1238.5 2194 90.004000 13 1790 2 chr2D.!!$R4 1777
2 TraesCS2B01G447600 chr2A 680096093 680098134 2041 True 797.0 1731 89.639667 450 2516 3 chr2A.!!$R2 2066

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
587 639 0.31179 TAATCGACGGCCGGTATCAC 59.688 55.0 31.76 11.88 39.14 3.06 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2225 2387 0.036164 TCACGTCAGGAAACCATGGG 59.964 55.0 18.09 0.0 0.0 4.0 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 9.672673 GATTGGGCTAGTTATGATATAACATGT 57.327 33.333 12.63 0.00 0.00 3.21
49 50 6.816640 TGTTAAAAGACGATACATTGGGAGAG 59.183 38.462 0.00 0.00 0.00 3.20
72 74 2.566724 CCCCTTCTCTCTCCATCATAGC 59.433 54.545 0.00 0.00 0.00 2.97
74 76 3.839490 CCCTTCTCTCTCCATCATAGCAT 59.161 47.826 0.00 0.00 0.00 3.79
75 77 4.322877 CCCTTCTCTCTCCATCATAGCATG 60.323 50.000 0.00 0.00 0.00 4.06
76 78 4.527427 CCTTCTCTCTCCATCATAGCATGA 59.473 45.833 0.00 2.05 44.55 3.07
121 125 9.539825 CTTGAGAGCAAGTATAATAAGTGATGT 57.460 33.333 0.00 0.00 45.10 3.06
125 129 9.482627 AGAGCAAGTATAATAAGTGATGTAAGC 57.517 33.333 0.00 0.00 0.00 3.09
126 130 8.299262 AGCAAGTATAATAAGTGATGTAAGCG 57.701 34.615 0.00 0.00 0.00 4.68
127 131 7.385205 AGCAAGTATAATAAGTGATGTAAGCGG 59.615 37.037 0.00 0.00 0.00 5.52
128 132 7.360101 GCAAGTATAATAAGTGATGTAAGCGGG 60.360 40.741 0.00 0.00 0.00 6.13
129 133 7.534723 AGTATAATAAGTGATGTAAGCGGGA 57.465 36.000 0.00 0.00 0.00 5.14
130 134 8.135382 AGTATAATAAGTGATGTAAGCGGGAT 57.865 34.615 0.00 0.00 0.00 3.85
131 135 8.035394 AGTATAATAAGTGATGTAAGCGGGATG 58.965 37.037 0.00 0.00 0.00 3.51
135 139 4.481368 AGTGATGTAAGCGGGATGTAAA 57.519 40.909 0.00 0.00 0.00 2.01
142 146 3.824414 AAGCGGGATGTAAAACTTTCG 57.176 42.857 0.00 0.00 0.00 3.46
172 176 5.796424 ATTTTTGCTGAGTTGAAGGTGAT 57.204 34.783 0.00 0.00 0.00 3.06
173 177 6.899393 ATTTTTGCTGAGTTGAAGGTGATA 57.101 33.333 0.00 0.00 0.00 2.15
197 201 7.436320 AGGAGAGAAAAGAGAATAGAAGCAT 57.564 36.000 0.00 0.00 0.00 3.79
198 202 8.546083 AGGAGAGAAAAGAGAATAGAAGCATA 57.454 34.615 0.00 0.00 0.00 3.14
199 203 9.158097 AGGAGAGAAAAGAGAATAGAAGCATAT 57.842 33.333 0.00 0.00 0.00 1.78
249 253 3.990959 CCCTAGAGGCTTTTTGAGAGT 57.009 47.619 0.00 0.00 0.00 3.24
260 265 4.025313 GCTTTTTGAGAGTGTGAGTGAGTC 60.025 45.833 0.00 0.00 0.00 3.36
289 294 6.585695 TCAACAAAGTAATACTCTCTCCGT 57.414 37.500 0.00 0.00 0.00 4.69
290 295 7.692460 TCAACAAAGTAATACTCTCTCCGTA 57.308 36.000 0.00 0.00 0.00 4.02
293 345 8.645487 CAACAAAGTAATACTCTCTCCGTAAAC 58.355 37.037 0.00 0.00 0.00 2.01
307 359 8.355169 TCTCTCCGTAAACTAATATAAACGCAT 58.645 33.333 0.00 0.00 0.00 4.73
308 360 8.876275 TCTCCGTAAACTAATATAAACGCATT 57.124 30.769 0.00 0.00 0.00 3.56
360 412 9.832445 TGCTTTTATATTAGTTTACAGAGGGAG 57.168 33.333 0.00 0.00 0.00 4.30
361 413 9.833917 GCTTTTATATTAGTTTACAGAGGGAGT 57.166 33.333 0.00 0.00 0.00 3.85
369 421 8.890410 TTAGTTTACAGAGGGAGTACTACATT 57.110 34.615 7.57 0.00 0.00 2.71
404 456 8.779354 AACTATTATACTTGCCAGCTATAAGC 57.221 34.615 0.00 0.00 42.84 3.09
587 639 0.311790 TAATCGACGGCCGGTATCAC 59.688 55.000 31.76 11.88 39.14 3.06
644 696 2.439507 AGAGCTCCTGACAAAACCTTGA 59.560 45.455 10.93 0.00 36.33 3.02
695 747 2.223272 GGATTTGTTTCTTCGATCCGCC 60.223 50.000 0.00 0.00 0.00 6.13
944 998 2.927856 TGTCACCGCCCACCTCAT 60.928 61.111 0.00 0.00 0.00 2.90
975 1029 1.202486 TCCGCGTCCAGCCTATAAAAG 60.202 52.381 4.92 0.00 44.76 2.27
976 1030 1.202486 CCGCGTCCAGCCTATAAAAGA 60.202 52.381 4.92 0.00 44.76 2.52
1004 1058 1.454111 CCTCTCGTCCTCCCATCGT 60.454 63.158 0.00 0.00 0.00 3.73
1007 1061 0.253894 TCTCGTCCTCCCATCGTACA 59.746 55.000 0.00 0.00 0.00 2.90
1245 1310 3.530104 GGTACGTGTTCGCGAGCG 61.530 66.667 18.23 20.31 41.18 5.03
1283 1349 4.083003 TGACTTCATGCCGATTGTTTTACC 60.083 41.667 0.00 0.00 0.00 2.85
1309 1375 3.487544 GCTGCTGGTTAATCAATCGTTCC 60.488 47.826 0.00 0.00 0.00 3.62
1331 1397 1.620323 TGGGATATGCTGACCGAGATG 59.380 52.381 0.00 0.00 0.00 2.90
1601 1667 0.888736 CACAGGGCATCACGGACAAA 60.889 55.000 0.00 0.00 0.00 2.83
1710 1787 8.583810 TTGTAAGGAATGCATATACGTACTTC 57.416 34.615 0.00 0.00 0.00 3.01
1790 1875 8.858003 TGTTAATGTCAAACGCAATAAAGAAA 57.142 26.923 0.00 0.00 0.00 2.52
1791 1876 9.302345 TGTTAATGTCAAACGCAATAAAGAAAA 57.698 25.926 0.00 0.00 0.00 2.29
1794 1879 8.586570 AATGTCAAACGCAATAAAGAAAATGA 57.413 26.923 0.00 0.00 0.00 2.57
1795 1880 8.761575 ATGTCAAACGCAATAAAGAAAATGAT 57.238 26.923 0.00 0.00 0.00 2.45
1796 1881 8.586570 TGTCAAACGCAATAAAGAAAATGATT 57.413 26.923 0.00 0.00 0.00 2.57
1797 1882 9.039870 TGTCAAACGCAATAAAGAAAATGATTT 57.960 25.926 0.00 0.00 0.00 2.17
1798 1883 9.862585 GTCAAACGCAATAAAGAAAATGATTTT 57.137 25.926 2.27 2.27 35.12 1.82
1835 1920 9.626045 GATGCTAAATTGTTTACATAATAGGCC 57.374 33.333 0.00 0.00 0.00 5.19
1836 1921 8.526667 TGCTAAATTGTTTACATAATAGGCCA 57.473 30.769 5.01 0.00 0.00 5.36
1837 1922 8.972127 TGCTAAATTGTTTACATAATAGGCCAA 58.028 29.630 5.01 0.00 0.00 4.52
1838 1923 9.981114 GCTAAATTGTTTACATAATAGGCCAAT 57.019 29.630 5.01 0.00 0.00 3.16
1853 1938 2.288825 GGCCAATAGCTATGCGTGAGTA 60.289 50.000 7.09 0.00 43.05 2.59
1908 1996 0.973496 AAGGAAGGAGGAGACGAGGC 60.973 60.000 0.00 0.00 0.00 4.70
1910 1998 3.418744 GAAGGAGGAGACGAGGCGC 62.419 68.421 0.00 0.00 0.00 6.53
1912 2000 3.760035 GGAGGAGACGAGGCGCAA 61.760 66.667 10.83 0.00 0.00 4.85
1927 2015 2.919494 GCAACACCGAGGCCAAAGG 61.919 63.158 5.01 7.67 0.00 3.11
1954 2042 3.461773 CGGGGCGAGTGGAGTGAT 61.462 66.667 0.00 0.00 0.00 3.06
1959 2047 3.023949 GCGAGTGGAGTGATGCCCT 62.024 63.158 0.00 0.00 0.00 5.19
1961 2049 1.607801 CGAGTGGAGTGATGCCCTGA 61.608 60.000 0.00 0.00 0.00 3.86
1963 2051 0.252421 AGTGGAGTGATGCCCTGAGA 60.252 55.000 0.00 0.00 0.00 3.27
1967 2055 1.954362 GAGTGATGCCCTGAGACGCT 61.954 60.000 0.00 0.00 0.00 5.07
2012 2100 1.935873 TCGTAGACGGAGATAACACGG 59.064 52.381 1.67 0.00 40.29 4.94
2018 2106 0.460284 CGGAGATAACACGGCTTGCT 60.460 55.000 0.00 0.00 0.00 3.91
2022 2110 0.097674 GATAACACGGCTTGCTGCAG 59.902 55.000 10.11 10.11 45.15 4.41
2044 2132 1.470890 GTCTCAGGAGAAGGTGAGTCG 59.529 57.143 0.00 0.00 40.97 4.18
2046 2134 0.404426 TCAGGAGAAGGTGAGTCGGA 59.596 55.000 0.00 0.00 0.00 4.55
2047 2135 1.203013 TCAGGAGAAGGTGAGTCGGAA 60.203 52.381 0.00 0.00 0.00 4.30
2069 2157 2.926242 ACGGTTCGGGTGTGGGAT 60.926 61.111 0.00 0.00 0.00 3.85
2070 2158 2.435938 CGGTTCGGGTGTGGGATG 60.436 66.667 0.00 0.00 0.00 3.51
2072 2160 2.754375 GTTCGGGTGTGGGATGGT 59.246 61.111 0.00 0.00 0.00 3.55
2080 2168 0.251341 GTGTGGGATGGTGAAGGCTT 60.251 55.000 0.00 0.00 0.00 4.35
2084 2172 2.409870 GGATGGTGAAGGCTTGCCG 61.410 63.158 3.46 0.00 0.00 5.69
2086 2174 2.819984 GATGGTGAAGGCTTGCCGGA 62.820 60.000 5.05 0.00 0.00 5.14
2093 2181 0.251341 AAGGCTTGCCGGAGAAATGT 60.251 50.000 5.05 0.00 0.00 2.71
2149 2237 9.838339 AATGCATATATAAGGACATAGTAAGGC 57.162 33.333 0.00 0.00 0.00 4.35
2150 2238 8.374184 TGCATATATAAGGACATAGTAAGGCA 57.626 34.615 0.00 0.00 0.00 4.75
2152 2314 7.928706 GCATATATAAGGACATAGTAAGGCAGG 59.071 40.741 0.00 0.00 0.00 4.85
2155 2317 4.762289 AAGGACATAGTAAGGCAGGAAG 57.238 45.455 0.00 0.00 0.00 3.46
2161 2323 1.205055 AGTAAGGCAGGAAGTAGGGC 58.795 55.000 0.00 0.00 0.00 5.19
2162 2324 1.205055 GTAAGGCAGGAAGTAGGGCT 58.795 55.000 0.00 0.00 39.32 5.19
2167 2329 1.139256 GGCAGGAAGTAGGGCTCTTAC 59.861 57.143 0.00 0.00 0.00 2.34
2173 2335 1.486211 AGTAGGGCTCTTACGCACAT 58.514 50.000 0.00 0.00 35.21 3.21
2174 2336 1.409427 AGTAGGGCTCTTACGCACATC 59.591 52.381 0.00 0.00 35.21 3.06
2176 2338 0.176680 AGGGCTCTTACGCACATCAG 59.823 55.000 0.00 0.00 35.21 2.90
2178 2340 0.811616 GGCTCTTACGCACATCAGGG 60.812 60.000 0.00 0.00 0.00 4.45
2179 2341 0.811616 GCTCTTACGCACATCAGGGG 60.812 60.000 0.00 0.00 0.00 4.79
2180 2342 0.811616 CTCTTACGCACATCAGGGGC 60.812 60.000 0.00 0.00 0.00 5.80
2181 2343 1.819632 CTTACGCACATCAGGGGCC 60.820 63.158 0.00 0.00 0.00 5.80
2182 2344 2.535485 CTTACGCACATCAGGGGCCA 62.535 60.000 4.39 0.00 0.00 5.36
2184 2346 4.100084 CGCACATCAGGGGCCAGA 62.100 66.667 4.39 2.46 0.00 3.86
2187 2349 1.379044 CACATCAGGGGCCAGAACC 60.379 63.158 4.39 0.00 0.00 3.62
2188 2350 1.542375 ACATCAGGGGCCAGAACCT 60.542 57.895 4.39 0.00 37.66 3.50
2192 2354 2.208349 AGGGGCCAGAACCTGAGT 59.792 61.111 4.39 0.00 35.30 3.41
2193 2355 1.474307 AGGGGCCAGAACCTGAGTA 59.526 57.895 4.39 0.00 35.30 2.59
2194 2356 0.044855 AGGGGCCAGAACCTGAGTAT 59.955 55.000 4.39 0.00 35.30 2.12
2195 2357 1.294068 AGGGGCCAGAACCTGAGTATA 59.706 52.381 4.39 0.00 35.30 1.47
2198 2360 2.028930 GGGCCAGAACCTGAGTATATCG 60.029 54.545 4.39 0.00 32.44 2.92
2199 2361 2.628657 GGCCAGAACCTGAGTATATCGT 59.371 50.000 0.00 0.00 32.44 3.73
2202 2364 4.611943 CCAGAACCTGAGTATATCGTGTG 58.388 47.826 0.00 0.00 32.44 3.82
2203 2365 4.098044 CCAGAACCTGAGTATATCGTGTGT 59.902 45.833 0.00 0.00 32.44 3.72
2204 2366 5.274718 CAGAACCTGAGTATATCGTGTGTC 58.725 45.833 0.00 0.00 32.44 3.67
2205 2367 5.066634 CAGAACCTGAGTATATCGTGTGTCT 59.933 44.000 0.00 0.00 32.44 3.41
2206 2368 5.652891 AGAACCTGAGTATATCGTGTGTCTT 59.347 40.000 0.00 0.00 0.00 3.01
2207 2369 6.827251 AGAACCTGAGTATATCGTGTGTCTTA 59.173 38.462 0.00 0.00 0.00 2.10
2208 2370 6.621316 ACCTGAGTATATCGTGTGTCTTAG 57.379 41.667 0.00 0.00 0.00 2.18
2210 2372 5.008712 CCTGAGTATATCGTGTGTCTTAGCA 59.991 44.000 0.00 0.00 0.00 3.49
2212 2374 7.039313 TGAGTATATCGTGTGTCTTAGCATT 57.961 36.000 0.00 0.00 0.00 3.56
2231 2393 3.576078 TTATGTGCCTAAGACCCATGG 57.424 47.619 4.14 4.14 0.00 3.66
2234 2396 1.427368 TGTGCCTAAGACCCATGGTTT 59.573 47.619 11.73 4.86 35.25 3.27
2237 2399 1.285078 GCCTAAGACCCATGGTTTCCT 59.715 52.381 11.73 0.00 35.25 3.36
2238 2400 2.945890 GCCTAAGACCCATGGTTTCCTG 60.946 54.545 11.73 0.00 35.25 3.86
2239 2401 2.576191 CCTAAGACCCATGGTTTCCTGA 59.424 50.000 11.73 0.00 35.25 3.86
2240 2402 2.586648 AAGACCCATGGTTTCCTGAC 57.413 50.000 11.73 0.00 35.25 3.51
2241 2403 0.324943 AGACCCATGGTTTCCTGACG 59.675 55.000 11.73 0.00 35.25 4.35
2242 2404 0.036306 GACCCATGGTTTCCTGACGT 59.964 55.000 11.73 0.00 35.25 4.34
2243 2405 0.250727 ACCCATGGTTTCCTGACGTG 60.251 55.000 11.73 0.00 27.29 4.49
2244 2406 0.036164 CCCATGGTTTCCTGACGTGA 59.964 55.000 11.73 0.00 0.00 4.35
2245 2407 1.156736 CCATGGTTTCCTGACGTGAC 58.843 55.000 2.57 0.00 0.00 3.67
2246 2408 0.790207 CATGGTTTCCTGACGTGACG 59.210 55.000 2.24 2.24 0.00 4.35
2251 2413 0.249573 TTTCCTGACGTGACGTTCCC 60.250 55.000 13.44 0.00 41.37 3.97
2252 2414 1.111116 TTCCTGACGTGACGTTCCCT 61.111 55.000 13.44 0.00 41.37 4.20
2253 2415 1.080705 CCTGACGTGACGTTCCCTC 60.081 63.158 13.44 0.00 41.37 4.30
2254 2416 1.442184 CTGACGTGACGTTCCCTCG 60.442 63.158 13.44 0.00 41.37 4.63
2255 2417 1.848932 CTGACGTGACGTTCCCTCGA 61.849 60.000 13.44 0.00 41.37 4.04
2256 2418 1.441682 GACGTGACGTTCCCTCGAC 60.442 63.158 13.44 0.00 41.37 4.20
2257 2419 1.849976 GACGTGACGTTCCCTCGACT 61.850 60.000 13.44 0.00 41.37 4.18
2258 2420 0.603707 ACGTGACGTTCCCTCGACTA 60.604 55.000 4.10 0.00 36.35 2.59
2259 2421 0.179205 CGTGACGTTCCCTCGACTAC 60.179 60.000 0.00 0.00 34.70 2.73
2260 2422 0.877071 GTGACGTTCCCTCGACTACA 59.123 55.000 0.00 0.00 34.70 2.74
2261 2423 1.267806 GTGACGTTCCCTCGACTACAA 59.732 52.381 0.00 0.00 34.70 2.41
2262 2424 1.955778 TGACGTTCCCTCGACTACAAA 59.044 47.619 0.00 0.00 34.70 2.83
2263 2425 2.559668 TGACGTTCCCTCGACTACAAAT 59.440 45.455 0.00 0.00 34.70 2.32
2264 2426 3.006110 TGACGTTCCCTCGACTACAAATT 59.994 43.478 0.00 0.00 34.70 1.82
2265 2427 3.992427 GACGTTCCCTCGACTACAAATTT 59.008 43.478 0.00 0.00 34.70 1.82
2266 2428 3.992427 ACGTTCCCTCGACTACAAATTTC 59.008 43.478 0.00 0.00 34.70 2.17
2267 2429 3.991773 CGTTCCCTCGACTACAAATTTCA 59.008 43.478 0.00 0.00 0.00 2.69
2268 2430 4.143179 CGTTCCCTCGACTACAAATTTCAC 60.143 45.833 0.00 0.00 0.00 3.18
2269 2431 3.581755 TCCCTCGACTACAAATTTCACG 58.418 45.455 0.00 0.00 0.00 4.35
2270 2432 3.006110 TCCCTCGACTACAAATTTCACGT 59.994 43.478 0.00 0.00 0.00 4.49
2271 2433 4.218200 TCCCTCGACTACAAATTTCACGTA 59.782 41.667 0.00 0.00 0.00 3.57
2272 2434 4.325472 CCCTCGACTACAAATTTCACGTAC 59.675 45.833 0.00 0.00 0.00 3.67
2273 2435 4.325472 CCTCGACTACAAATTTCACGTACC 59.675 45.833 0.00 0.00 0.00 3.34
2274 2436 4.236935 TCGACTACAAATTTCACGTACCC 58.763 43.478 0.00 0.00 0.00 3.69
2275 2437 3.368843 CGACTACAAATTTCACGTACCCC 59.631 47.826 0.00 0.00 0.00 4.95
2276 2438 3.678289 ACTACAAATTTCACGTACCCCC 58.322 45.455 0.00 0.00 0.00 5.40
2290 2452 3.716381 CCCCCTGTACGGCTGTTA 58.284 61.111 1.99 0.00 0.00 2.41
2291 2453 1.520666 CCCCCTGTACGGCTGTTAG 59.479 63.158 1.99 2.85 0.00 2.34
2292 2454 1.520666 CCCCTGTACGGCTGTTAGG 59.479 63.158 17.52 17.52 33.40 2.69
2293 2455 0.974010 CCCCTGTACGGCTGTTAGGA 60.974 60.000 23.31 0.00 34.75 2.94
2294 2456 0.899720 CCCTGTACGGCTGTTAGGAA 59.100 55.000 23.31 0.00 34.75 3.36
2295 2457 1.405121 CCCTGTACGGCTGTTAGGAAC 60.405 57.143 23.31 8.98 34.75 3.62
2296 2458 1.274167 CCTGTACGGCTGTTAGGAACA 59.726 52.381 19.01 9.82 39.52 3.18
2297 2459 2.289195 CCTGTACGGCTGTTAGGAACAA 60.289 50.000 19.01 0.00 41.61 2.83
2298 2460 2.735134 CTGTACGGCTGTTAGGAACAAC 59.265 50.000 1.99 0.00 41.61 3.32
2299 2461 1.723003 GTACGGCTGTTAGGAACAACG 59.277 52.381 1.99 11.98 41.61 4.10
2300 2462 0.105408 ACGGCTGTTAGGAACAACGT 59.895 50.000 12.93 12.93 44.66 3.99
2301 2463 1.340889 ACGGCTGTTAGGAACAACGTA 59.659 47.619 15.63 0.00 46.30 3.57
2302 2464 2.224018 ACGGCTGTTAGGAACAACGTAA 60.224 45.455 15.63 0.00 46.30 3.18
2303 2465 2.156310 CGGCTGTTAGGAACAACGTAAC 59.844 50.000 0.00 0.00 44.82 2.50
2310 2472 6.774354 GTTAGGAACAACGTAACATCTCAA 57.226 37.500 0.00 0.00 44.33 3.02
2311 2473 6.587651 GTTAGGAACAACGTAACATCTCAAC 58.412 40.000 0.00 0.00 44.33 3.18
2312 2474 4.699637 AGGAACAACGTAACATCTCAACA 58.300 39.130 0.00 0.00 0.00 3.33
2313 2475 5.120399 AGGAACAACGTAACATCTCAACAA 58.880 37.500 0.00 0.00 0.00 2.83
2314 2476 5.763204 AGGAACAACGTAACATCTCAACAAT 59.237 36.000 0.00 0.00 0.00 2.71
2315 2477 6.932400 AGGAACAACGTAACATCTCAACAATA 59.068 34.615 0.00 0.00 0.00 1.90
2316 2478 7.013529 GGAACAACGTAACATCTCAACAATAC 58.986 38.462 0.00 0.00 0.00 1.89
2317 2479 7.307514 GGAACAACGTAACATCTCAACAATACA 60.308 37.037 0.00 0.00 0.00 2.29
2318 2480 7.667043 ACAACGTAACATCTCAACAATACAT 57.333 32.000 0.00 0.00 0.00 2.29
2319 2481 8.766000 ACAACGTAACATCTCAACAATACATA 57.234 30.769 0.00 0.00 0.00 2.29
2320 2482 9.378551 ACAACGTAACATCTCAACAATACATAT 57.621 29.630 0.00 0.00 0.00 1.78
2342 2504 4.920640 ATGTGGAGAACAGATACCTACG 57.079 45.455 0.00 0.00 43.64 3.51
2345 2507 5.687780 TGTGGAGAACAGATACCTACGATA 58.312 41.667 0.00 0.00 33.78 2.92
2348 2510 5.944599 TGGAGAACAGATACCTACGATATCC 59.055 44.000 0.00 0.00 30.54 2.59
2349 2511 5.064962 GGAGAACAGATACCTACGATATCCG 59.935 48.000 0.00 0.00 45.44 4.18
2371 2533 2.182030 GGGACTCGGCGAGTTCTG 59.818 66.667 38.55 18.54 43.53 3.02
2372 2534 2.341101 GGGACTCGGCGAGTTCTGA 61.341 63.158 38.55 5.12 43.53 3.27
2373 2535 1.668101 GGGACTCGGCGAGTTCTGAT 61.668 60.000 38.55 20.16 43.53 2.90
2376 2539 1.227089 CTCGGCGAGTTCTGATGGG 60.227 63.158 27.92 0.00 0.00 4.00
2390 2553 0.756815 GATGGGGTGGAGATTTGGGC 60.757 60.000 0.00 0.00 0.00 5.36
2399 2563 2.014857 GGAGATTTGGGCGTTTAGGAC 58.985 52.381 0.00 0.00 0.00 3.85
2406 2570 2.713877 TGGGCGTTTAGGACCAATTAC 58.286 47.619 0.00 0.00 43.87 1.89
2408 2572 2.447089 GCGTTTAGGACCAATTACGC 57.553 50.000 14.59 14.59 45.73 4.42
2416 2580 4.060038 AGGACCAATTACGCATGTCTAG 57.940 45.455 0.00 0.00 0.00 2.43
2421 2585 3.069586 CCAATTACGCATGTCTAGAGGGA 59.930 47.826 0.00 0.00 0.00 4.20
2422 2586 4.262635 CCAATTACGCATGTCTAGAGGGAT 60.263 45.833 0.00 0.00 0.00 3.85
2423 2587 4.527509 ATTACGCATGTCTAGAGGGATG 57.472 45.455 0.00 0.00 0.00 3.51
2430 2594 4.676109 CATGTCTAGAGGGATGATCTCCT 58.324 47.826 0.00 2.64 44.28 3.69
2479 2643 5.371526 AGAATATGAAGCACCCTACACATG 58.628 41.667 0.00 0.00 0.00 3.21
2487 2651 2.783135 CACCCTACACATGCAAGTCTT 58.217 47.619 0.00 0.00 0.00 3.01
2489 2653 2.371841 ACCCTACACATGCAAGTCTTCA 59.628 45.455 0.00 0.00 0.00 3.02
2490 2654 3.181445 ACCCTACACATGCAAGTCTTCAA 60.181 43.478 0.00 0.00 0.00 2.69
2493 2657 4.756642 CCTACACATGCAAGTCTTCAAGAA 59.243 41.667 0.00 0.00 0.00 2.52
2503 2667 8.079211 TGCAAGTCTTCAAGAATATAGGTAGT 57.921 34.615 0.00 0.00 0.00 2.73
2511 2675 9.319143 CTTCAAGAATATAGGTAGTGGAAAGTG 57.681 37.037 0.00 0.00 0.00 3.16
2516 2680 9.440761 AGAATATAGGTAGTGGAAAGTGAAGAT 57.559 33.333 0.00 0.00 0.00 2.40
2520 2684 6.884280 AGGTAGTGGAAAGTGAAGATTTTG 57.116 37.500 0.00 0.00 0.00 2.44
2521 2685 6.365520 AGGTAGTGGAAAGTGAAGATTTTGT 58.634 36.000 0.00 0.00 0.00 2.83
2522 2686 7.514721 AGGTAGTGGAAAGTGAAGATTTTGTA 58.485 34.615 0.00 0.00 0.00 2.41
2523 2687 7.661847 AGGTAGTGGAAAGTGAAGATTTTGTAG 59.338 37.037 0.00 0.00 0.00 2.74
2524 2688 7.660208 GGTAGTGGAAAGTGAAGATTTTGTAGA 59.340 37.037 0.00 0.00 0.00 2.59
2525 2689 9.052759 GTAGTGGAAAGTGAAGATTTTGTAGAA 57.947 33.333 0.00 0.00 0.00 2.10
2526 2690 8.159344 AGTGGAAAGTGAAGATTTTGTAGAAG 57.841 34.615 0.00 0.00 0.00 2.85
2527 2691 7.775561 AGTGGAAAGTGAAGATTTTGTAGAAGT 59.224 33.333 0.00 0.00 0.00 3.01
2528 2692 9.052759 GTGGAAAGTGAAGATTTTGTAGAAGTA 57.947 33.333 0.00 0.00 0.00 2.24
2529 2693 9.621629 TGGAAAGTGAAGATTTTGTAGAAGTAA 57.378 29.630 0.00 0.00 0.00 2.24
2541 2705 7.972832 TTTGTAGAAGTAAAGTACATGGTGG 57.027 36.000 0.00 0.00 0.00 4.61
2542 2706 6.921486 TGTAGAAGTAAAGTACATGGTGGA 57.079 37.500 0.00 0.00 0.00 4.02
2543 2707 7.490657 TGTAGAAGTAAAGTACATGGTGGAT 57.509 36.000 0.00 0.00 0.00 3.41
2544 2708 7.553334 TGTAGAAGTAAAGTACATGGTGGATC 58.447 38.462 0.00 0.00 0.00 3.36
2545 2709 5.661458 AGAAGTAAAGTACATGGTGGATCG 58.339 41.667 0.00 0.00 0.00 3.69
2546 2710 4.402056 AGTAAAGTACATGGTGGATCGG 57.598 45.455 0.00 0.00 0.00 4.18
2547 2711 3.773119 AGTAAAGTACATGGTGGATCGGT 59.227 43.478 0.00 0.00 0.00 4.69
2548 2712 2.981859 AAGTACATGGTGGATCGGTC 57.018 50.000 0.00 0.00 0.00 4.79
2549 2713 0.744874 AGTACATGGTGGATCGGTCG 59.255 55.000 0.00 0.00 0.00 4.79
2550 2714 0.458669 GTACATGGTGGATCGGTCGT 59.541 55.000 0.00 0.00 0.00 4.34
2551 2715 1.134907 GTACATGGTGGATCGGTCGTT 60.135 52.381 0.00 0.00 0.00 3.85
2552 2716 0.391130 ACATGGTGGATCGGTCGTTG 60.391 55.000 0.00 0.00 0.00 4.10
2553 2717 1.089481 CATGGTGGATCGGTCGTTGG 61.089 60.000 0.00 0.00 0.00 3.77
2554 2718 1.261938 ATGGTGGATCGGTCGTTGGA 61.262 55.000 0.00 0.00 0.00 3.53
2555 2719 1.447314 GGTGGATCGGTCGTTGGAC 60.447 63.158 0.00 0.00 42.66 4.02
2563 2727 4.974989 GTCGTTGGACCGGCCGTT 62.975 66.667 26.12 10.80 40.66 4.44
2564 2728 4.973055 TCGTTGGACCGGCCGTTG 62.973 66.667 26.12 12.62 40.66 4.10
2566 2730 3.656045 GTTGGACCGGCCGTTGTG 61.656 66.667 26.12 11.36 40.66 3.33
2567 2731 4.939368 TTGGACCGGCCGTTGTGG 62.939 66.667 26.12 10.93 40.66 4.17
2572 2736 4.715523 CCGGCCGTTGTGGGACAT 62.716 66.667 26.12 0.00 44.52 3.06
2573 2737 3.430862 CGGCCGTTGTGGGACATG 61.431 66.667 19.50 0.00 44.52 3.21
2574 2738 2.282180 GGCCGTTGTGGGACATGT 60.282 61.111 0.00 0.00 44.52 3.21
2575 2739 2.625823 GGCCGTTGTGGGACATGTG 61.626 63.158 1.15 0.00 44.52 3.21
2576 2740 2.625823 GCCGTTGTGGGACATGTGG 61.626 63.158 1.15 0.00 44.52 4.17
2577 2741 1.971167 CCGTTGTGGGACATGTGGG 60.971 63.158 1.15 0.00 44.52 4.61
2578 2742 1.971167 CGTTGTGGGACATGTGGGG 60.971 63.158 1.15 0.00 44.52 4.96
2579 2743 1.458486 GTTGTGGGACATGTGGGGA 59.542 57.895 1.15 0.00 44.52 4.81
2580 2744 0.609131 GTTGTGGGACATGTGGGGAG 60.609 60.000 1.15 0.00 44.52 4.30
2581 2745 1.065410 TTGTGGGACATGTGGGGAGT 61.065 55.000 1.15 0.00 44.52 3.85
2582 2746 1.065410 TGTGGGACATGTGGGGAGTT 61.065 55.000 1.15 0.00 44.52 3.01
2583 2747 0.609131 GTGGGACATGTGGGGAGTTG 60.609 60.000 1.15 0.00 44.52 3.16
2584 2748 1.065410 TGGGACATGTGGGGAGTTGT 61.065 55.000 1.15 0.00 0.00 3.32
2585 2749 0.609131 GGGACATGTGGGGAGTTGTG 60.609 60.000 1.15 0.00 0.00 3.33
2586 2750 0.400213 GGACATGTGGGGAGTTGTGA 59.600 55.000 1.15 0.00 0.00 3.58
2587 2751 1.611673 GGACATGTGGGGAGTTGTGAG 60.612 57.143 1.15 0.00 0.00 3.51
2588 2752 0.250901 ACATGTGGGGAGTTGTGAGC 60.251 55.000 0.00 0.00 0.00 4.26
2589 2753 1.003355 ATGTGGGGAGTTGTGAGCG 60.003 57.895 0.00 0.00 0.00 5.03
2590 2754 2.358737 GTGGGGAGTTGTGAGCGG 60.359 66.667 0.00 0.00 0.00 5.52
2591 2755 3.636231 TGGGGAGTTGTGAGCGGG 61.636 66.667 0.00 0.00 0.00 6.13
2592 2756 4.410400 GGGGAGTTGTGAGCGGGG 62.410 72.222 0.00 0.00 0.00 5.73
2594 2758 4.329545 GGAGTTGTGAGCGGGGCA 62.330 66.667 0.00 0.00 0.00 5.36
2595 2759 2.743928 GAGTTGTGAGCGGGGCAG 60.744 66.667 0.00 0.00 0.00 4.85
2606 2770 3.732849 GGGGCAGCCTGCTTACCT 61.733 66.667 17.55 0.00 44.28 3.08
2607 2771 2.124529 GGGCAGCCTGCTTACCTC 60.125 66.667 17.55 0.00 44.28 3.85
2608 2772 2.512515 GGCAGCCTGCTTACCTCG 60.513 66.667 17.55 0.00 44.28 4.63
2609 2773 2.512515 GCAGCCTGCTTACCTCGG 60.513 66.667 10.04 0.00 40.96 4.63
2610 2774 2.982130 CAGCCTGCTTACCTCGGT 59.018 61.111 0.00 0.00 0.00 4.69
2611 2775 1.956629 GCAGCCTGCTTACCTCGGTA 61.957 60.000 10.04 0.00 40.96 4.02
2612 2776 0.179108 CAGCCTGCTTACCTCGGTAC 60.179 60.000 0.00 0.00 0.00 3.34
2613 2777 0.613853 AGCCTGCTTACCTCGGTACA 60.614 55.000 0.00 0.00 0.00 2.90
2614 2778 0.248289 GCCTGCTTACCTCGGTACAA 59.752 55.000 0.00 0.00 0.00 2.41
2615 2779 1.338389 GCCTGCTTACCTCGGTACAAA 60.338 52.381 0.00 0.00 0.00 2.83
2616 2780 2.618053 CCTGCTTACCTCGGTACAAAG 58.382 52.381 0.00 0.00 0.00 2.77
2617 2781 2.000447 CTGCTTACCTCGGTACAAAGC 59.000 52.381 12.83 12.83 0.00 3.51
2625 2789 4.716003 GGTACAAAGCGAGGCCTT 57.284 55.556 6.77 0.00 0.00 4.35
2626 2790 2.942641 GGTACAAAGCGAGGCCTTT 58.057 52.632 6.77 0.00 35.52 3.11
2627 2791 0.803117 GGTACAAAGCGAGGCCTTTC 59.197 55.000 6.77 1.05 32.97 2.62
2628 2792 0.803117 GTACAAAGCGAGGCCTTTCC 59.197 55.000 6.77 0.00 32.97 3.13
2629 2793 0.398696 TACAAAGCGAGGCCTTTCCA 59.601 50.000 6.77 0.00 37.29 3.53
2630 2794 0.890996 ACAAAGCGAGGCCTTTCCAG 60.891 55.000 6.77 0.00 37.29 3.86
2631 2795 0.606401 CAAAGCGAGGCCTTTCCAGA 60.606 55.000 6.77 0.00 37.29 3.86
2632 2796 0.322008 AAAGCGAGGCCTTTCCAGAG 60.322 55.000 6.77 0.00 37.29 3.35
2633 2797 2.124942 GCGAGGCCTTTCCAGAGG 60.125 66.667 6.77 0.00 39.93 3.69
2634 2798 2.660064 GCGAGGCCTTTCCAGAGGA 61.660 63.158 6.77 0.00 39.25 3.71
2635 2799 1.519719 CGAGGCCTTTCCAGAGGAG 59.480 63.158 6.77 0.00 39.25 3.69
2636 2800 0.972983 CGAGGCCTTTCCAGAGGAGA 60.973 60.000 6.77 0.00 39.25 3.71
2637 2801 1.506025 GAGGCCTTTCCAGAGGAGAT 58.494 55.000 6.77 0.00 39.25 2.75
2638 2802 1.416030 GAGGCCTTTCCAGAGGAGATC 59.584 57.143 6.77 0.00 39.25 2.75
2639 2803 0.472044 GGCCTTTCCAGAGGAGATCC 59.528 60.000 0.00 0.00 39.25 3.36
2640 2804 0.472044 GCCTTTCCAGAGGAGATCCC 59.528 60.000 0.00 0.00 39.25 3.85
2641 2805 0.755686 CCTTTCCAGAGGAGATCCCG 59.244 60.000 0.00 0.00 39.25 5.14
2642 2806 1.689575 CCTTTCCAGAGGAGATCCCGA 60.690 57.143 0.00 0.00 39.25 5.14
2643 2807 1.410882 CTTTCCAGAGGAGATCCCGAC 59.589 57.143 0.00 0.00 40.87 4.79
2644 2808 0.335019 TTCCAGAGGAGATCCCGACA 59.665 55.000 0.00 0.00 40.87 4.35
2645 2809 0.558220 TCCAGAGGAGATCCCGACAT 59.442 55.000 0.00 0.00 40.87 3.06
2646 2810 0.965439 CCAGAGGAGATCCCGACATC 59.035 60.000 0.00 0.00 40.87 3.06
2647 2811 0.595588 CAGAGGAGATCCCGACATCG 59.404 60.000 0.00 0.00 40.87 3.84
2648 2812 1.175983 AGAGGAGATCCCGACATCGC 61.176 60.000 0.00 0.00 40.87 4.58
2649 2813 2.148558 GAGGAGATCCCGACATCGCC 62.149 65.000 7.87 7.87 41.76 5.54
2650 2814 2.203771 GGAGATCCCGACATCGCCT 61.204 63.158 8.47 0.00 39.14 5.52
2651 2815 0.894184 GGAGATCCCGACATCGCCTA 60.894 60.000 8.47 0.00 39.14 3.93
2652 2816 1.178276 GAGATCCCGACATCGCCTAT 58.822 55.000 0.00 0.00 38.18 2.57
2653 2817 0.891373 AGATCCCGACATCGCCTATG 59.109 55.000 0.00 0.00 41.74 2.23
2661 2825 2.209838 ACATCGCCTATGTCGTCTTG 57.790 50.000 0.00 0.00 46.15 3.02
2662 2826 0.855349 CATCGCCTATGTCGTCTTGC 59.145 55.000 0.00 0.00 0.00 4.01
2663 2827 0.595053 ATCGCCTATGTCGTCTTGCG 60.595 55.000 0.00 0.00 43.05 4.85
2664 2828 2.860628 CGCCTATGTCGTCTTGCGC 61.861 63.158 0.00 0.00 41.07 6.09
2665 2829 2.860628 GCCTATGTCGTCTTGCGCG 61.861 63.158 0.00 0.00 41.07 6.86
2666 2830 1.516386 CCTATGTCGTCTTGCGCGT 60.516 57.895 8.43 0.00 41.07 6.01
2667 2831 1.076533 CCTATGTCGTCTTGCGCGTT 61.077 55.000 8.43 0.00 41.07 4.84
2668 2832 0.294887 CTATGTCGTCTTGCGCGTTC 59.705 55.000 8.43 0.00 41.07 3.95
2669 2833 1.074319 TATGTCGTCTTGCGCGTTCC 61.074 55.000 8.43 0.00 41.07 3.62
2670 2834 4.117372 GTCGTCTTGCGCGTTCCG 62.117 66.667 8.43 2.62 41.07 4.30
2671 2835 4.331166 TCGTCTTGCGCGTTCCGA 62.331 61.111 8.43 5.35 41.07 4.55
2672 2836 4.117372 CGTCTTGCGCGTTCCGAC 62.117 66.667 8.43 8.80 40.02 4.79
2673 2837 3.033764 GTCTTGCGCGTTCCGACA 61.034 61.111 8.43 0.00 40.02 4.35
2674 2838 2.733218 TCTTGCGCGTTCCGACAG 60.733 61.111 8.43 0.00 40.02 3.51
2675 2839 4.430423 CTTGCGCGTTCCGACAGC 62.430 66.667 8.43 0.00 40.02 4.40
2676 2840 4.961511 TTGCGCGTTCCGACAGCT 62.962 61.111 8.43 0.00 40.02 4.24
2679 2843 3.036084 CGCGTTCCGACAGCTGTT 61.036 61.111 22.65 4.46 40.02 3.16
2680 2844 2.853914 GCGTTCCGACAGCTGTTC 59.146 61.111 22.65 13.04 0.00 3.18
2681 2845 3.000080 GCGTTCCGACAGCTGTTCG 62.000 63.158 22.65 23.05 0.00 3.95
2686 2850 4.336581 CGACAGCTGTTCGGACAA 57.663 55.556 22.65 0.00 34.85 3.18
2687 2851 1.853319 CGACAGCTGTTCGGACAAC 59.147 57.895 22.65 4.21 34.85 3.32
2688 2852 0.874175 CGACAGCTGTTCGGACAACA 60.874 55.000 22.65 0.00 34.85 3.33
2693 2857 1.571460 CTGTTCGGACAACAGCAGC 59.429 57.895 0.00 0.00 40.80 5.25
2694 2858 2.162921 CTGTTCGGACAACAGCAGCG 62.163 60.000 0.00 0.00 40.80 5.18
2695 2859 2.108157 TTCGGACAACAGCAGCGT 59.892 55.556 0.00 0.00 0.00 5.07
2696 2860 1.954146 TTCGGACAACAGCAGCGTC 60.954 57.895 0.00 0.00 0.00 5.19
2697 2861 3.414700 CGGACAACAGCAGCGTCC 61.415 66.667 7.05 7.05 44.79 4.79
2698 2862 2.280797 GGACAACAGCAGCGTCCA 60.281 61.111 11.27 0.00 46.98 4.02
2699 2863 2.320587 GGACAACAGCAGCGTCCAG 61.321 63.158 11.27 0.00 46.98 3.86
2700 2864 1.300931 GACAACAGCAGCGTCCAGA 60.301 57.895 0.00 0.00 0.00 3.86
2701 2865 1.287730 GACAACAGCAGCGTCCAGAG 61.288 60.000 0.00 0.00 0.00 3.35
2702 2866 2.031516 CAACAGCAGCGTCCAGAGG 61.032 63.158 0.00 0.00 0.00 3.69
2703 2867 3.890936 AACAGCAGCGTCCAGAGGC 62.891 63.158 4.20 4.20 42.05 4.70
2709 2873 2.747855 GCGTCCAGAGGCTTTGGG 60.748 66.667 22.63 9.76 38.98 4.12
2710 2874 3.068881 CGTCCAGAGGCTTTGGGA 58.931 61.111 22.63 11.01 36.34 4.37
2711 2875 1.604378 CGTCCAGAGGCTTTGGGAT 59.396 57.895 22.63 0.00 36.34 3.85
2712 2876 0.035056 CGTCCAGAGGCTTTGGGATT 60.035 55.000 22.63 0.00 36.34 3.01
2713 2877 1.467920 GTCCAGAGGCTTTGGGATTG 58.532 55.000 22.63 0.00 36.34 2.67
2714 2878 0.332632 TCCAGAGGCTTTGGGATTGG 59.667 55.000 22.63 6.60 36.34 3.16
2715 2879 1.325476 CCAGAGGCTTTGGGATTGGC 61.325 60.000 16.10 0.00 31.87 4.52
2716 2880 0.612732 CAGAGGCTTTGGGATTGGCA 60.613 55.000 0.00 0.00 0.00 4.92
2717 2881 0.337428 AGAGGCTTTGGGATTGGCAT 59.663 50.000 0.00 0.00 0.00 4.40
2718 2882 0.749049 GAGGCTTTGGGATTGGCATC 59.251 55.000 0.00 0.00 0.00 3.91
2760 2924 2.247311 CGATTCGCTTTTGACCAAGG 57.753 50.000 0.00 0.00 0.00 3.61
2761 2925 1.135689 CGATTCGCTTTTGACCAAGGG 60.136 52.381 0.00 0.00 37.92 3.95
2762 2926 1.202348 GATTCGCTTTTGACCAAGGGG 59.798 52.381 0.00 0.00 37.33 4.79
2763 2927 0.183971 TTCGCTTTTGACCAAGGGGA 59.816 50.000 0.00 0.00 37.33 4.81
2764 2928 0.250727 TCGCTTTTGACCAAGGGGAG 60.251 55.000 0.00 0.00 37.33 4.30
2765 2929 1.244019 CGCTTTTGACCAAGGGGAGG 61.244 60.000 0.00 0.00 38.05 4.30
2766 2930 0.112412 GCTTTTGACCAAGGGGAGGA 59.888 55.000 0.00 0.00 38.05 3.71
2767 2931 1.911057 CTTTTGACCAAGGGGAGGAC 58.089 55.000 0.00 0.00 38.05 3.85
2768 2932 0.481128 TTTTGACCAAGGGGAGGACC 59.519 55.000 0.00 0.00 38.05 4.46
2769 2933 1.774894 TTTGACCAAGGGGAGGACCG 61.775 60.000 0.00 0.00 41.60 4.79
2770 2934 2.284405 GACCAAGGGGAGGACCGA 60.284 66.667 0.00 0.00 41.60 4.69
2771 2935 1.689582 GACCAAGGGGAGGACCGAT 60.690 63.158 0.00 0.00 41.60 4.18
2772 2936 1.687297 GACCAAGGGGAGGACCGATC 61.687 65.000 0.00 0.00 41.60 3.69
2773 2937 2.444256 CCAAGGGGAGGACCGATCC 61.444 68.421 0.00 0.00 46.69 3.36
2784 2948 2.966050 GGACCGATCCTCTATGAATGC 58.034 52.381 0.00 0.00 42.45 3.56
2785 2949 2.564947 GGACCGATCCTCTATGAATGCT 59.435 50.000 0.00 0.00 42.45 3.79
2786 2950 3.583806 GACCGATCCTCTATGAATGCTG 58.416 50.000 0.00 0.00 0.00 4.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 9.672673 ACATGTTATATCATAACTAGCCCAATC 57.327 33.333 9.71 0.00 0.00 2.67
26 27 6.346096 CCTCTCCCAATGTATCGTCTTTTAA 58.654 40.000 0.00 0.00 0.00 1.52
49 50 0.692419 TGATGGAGAGAGAAGGGGCC 60.692 60.000 0.00 0.00 0.00 5.80
72 74 4.320057 GGAGCGCCTTCAAAAGATATCATG 60.320 45.833 2.29 1.37 0.00 3.07
74 76 3.118261 AGGAGCGCCTTCAAAAGATATCA 60.118 43.478 1.77 0.00 43.90 2.15
75 77 3.471680 AGGAGCGCCTTCAAAAGATATC 58.528 45.455 1.77 0.00 43.90 1.63
76 78 3.567478 AGGAGCGCCTTCAAAAGATAT 57.433 42.857 1.77 0.00 43.90 1.63
99 103 9.482627 GCTTACATCACTTATTATACTTGCTCT 57.517 33.333 0.00 0.00 0.00 4.09
121 125 4.567971 TCGAAAGTTTTACATCCCGCTTA 58.432 39.130 0.00 0.00 0.00 3.09
122 126 3.404899 TCGAAAGTTTTACATCCCGCTT 58.595 40.909 0.00 0.00 0.00 4.68
123 127 3.048337 TCGAAAGTTTTACATCCCGCT 57.952 42.857 0.00 0.00 0.00 5.52
124 128 5.668558 ATATCGAAAGTTTTACATCCCGC 57.331 39.130 0.00 0.00 0.00 6.13
168 172 9.965824 CTTCTATTCTCTTTTCTCTCCTATCAC 57.034 37.037 0.00 0.00 0.00 3.06
169 173 8.637986 GCTTCTATTCTCTTTTCTCTCCTATCA 58.362 37.037 0.00 0.00 0.00 2.15
172 176 7.962995 TGCTTCTATTCTCTTTTCTCTCCTA 57.037 36.000 0.00 0.00 0.00 2.94
173 177 6.865834 TGCTTCTATTCTCTTTTCTCTCCT 57.134 37.500 0.00 0.00 0.00 3.69
204 208 9.813470 GGCACATGCTACAACTGGTTGTTAATT 62.813 40.741 21.54 5.52 45.00 1.40
206 210 7.227535 GGCACATGCTACAACTGGTTGTTAA 62.228 44.000 21.54 10.14 45.00 2.01
210 214 1.068333 GGCACATGCTACAACTGGTTG 60.068 52.381 11.35 11.35 42.56 3.77
242 246 3.638627 ACATGACTCACTCACACTCTCAA 59.361 43.478 0.00 0.00 0.00 3.02
246 250 5.316327 TGATACATGACTCACTCACACTC 57.684 43.478 0.00 0.00 0.00 3.51
249 253 5.467035 TGTTGATACATGACTCACTCACA 57.533 39.130 0.00 0.89 0.00 3.58
283 288 8.876275 AATGCGTTTATATTAGTTTACGGAGA 57.124 30.769 0.00 0.00 33.17 3.71
335 387 9.833917 ACTCCCTCTGTAAACTAATATAAAAGC 57.166 33.333 0.00 0.00 0.00 3.51
345 397 8.890410 AAATGTAGTACTCCCTCTGTAAACTA 57.110 34.615 0.00 0.00 0.00 2.24
346 398 7.793948 AAATGTAGTACTCCCTCTGTAAACT 57.206 36.000 0.00 0.00 0.00 2.66
347 399 8.843885 AAAAATGTAGTACTCCCTCTGTAAAC 57.156 34.615 0.00 0.00 0.00 2.01
404 456 5.397240 TGTTGACGCGTCATCTATAATTACG 59.603 40.000 39.38 0.00 39.64 3.18
405 457 6.742999 TGTTGACGCGTCATCTATAATTAC 57.257 37.500 39.38 29.41 39.64 1.89
421 473 3.392882 TGCTGGCTATATGATGTTGACG 58.607 45.455 0.00 0.00 0.00 4.35
423 475 3.405831 GCTGCTGGCTATATGATGTTGA 58.594 45.455 0.00 0.00 38.06 3.18
536 588 8.919777 GGTAAGTTTAGCCATGTTTATATCCT 57.080 34.615 0.00 0.00 0.00 3.24
609 661 4.033817 CAGGAGCTCTTTTAAGATGCTTCG 59.966 45.833 14.64 7.87 38.61 3.79
644 696 4.211794 CCACGTTTGAAGGTTACGTACAAT 59.788 41.667 0.00 0.00 45.67 2.71
695 747 2.879103 ACCTACATGACCTGTTTGGG 57.121 50.000 0.00 0.00 39.39 4.12
934 988 2.514824 GCGAAGGATGAGGTGGGC 60.515 66.667 0.00 0.00 0.00 5.36
1245 1310 2.865343 AGTCATGATCGAACGGTACC 57.135 50.000 0.16 0.16 0.00 3.34
1276 1341 1.804601 ACCAGCAGCGTAGGTAAAAC 58.195 50.000 5.53 0.00 35.08 2.43
1283 1349 3.060272 CGATTGATTAACCAGCAGCGTAG 60.060 47.826 0.00 0.00 0.00 3.51
1309 1375 1.620323 TCTCGGTCAGCATATCCCATG 59.380 52.381 0.00 0.00 0.00 3.66
1331 1397 1.439353 CCTGTCCCATGCACGCATAC 61.439 60.000 3.80 0.37 34.91 2.39
1668 1734 7.322664 TCCTTACAATGGAAAATGAATTGAGC 58.677 34.615 1.89 0.00 35.67 4.26
1710 1787 6.320494 ACAGCTATCTTATCTCTTGTACCG 57.680 41.667 0.00 0.00 0.00 4.02
1746 1831 5.801531 AACAGTGCGGTAATCCTATATCA 57.198 39.130 0.00 0.00 0.00 2.15
1747 1832 7.817962 ACATTAACAGTGCGGTAATCCTATATC 59.182 37.037 0.00 0.00 0.00 1.63
1751 1836 5.105269 TGACATTAACAGTGCGGTAATCCTA 60.105 40.000 0.00 0.00 0.00 2.94
1819 1904 9.448438 CATAGCTATTGGCCTATTATGTAAACA 57.552 33.333 4.63 0.00 43.05 2.83
1833 1918 1.871080 ACTCACGCATAGCTATTGGC 58.129 50.000 2.64 4.70 42.19 4.52
1834 1919 2.989840 GCTACTCACGCATAGCTATTGG 59.010 50.000 2.64 1.25 40.59 3.16
1840 1925 2.209838 TCAAGCTACTCACGCATAGC 57.790 50.000 0.00 0.00 43.49 2.97
1908 1996 3.254014 CTTTGGCCTCGGTGTTGCG 62.254 63.158 3.32 0.00 0.00 4.85
1910 1998 2.919494 GCCTTTGGCCTCGGTGTTG 61.919 63.158 3.32 0.00 44.06 3.33
1951 2039 2.580815 CAGCGTCTCAGGGCATCA 59.419 61.111 0.00 0.00 0.00 3.07
1992 2080 1.935873 CCGTGTTATCTCCGTCTACGA 59.064 52.381 3.65 0.00 43.02 3.43
2006 2094 2.516930 ACTGCAGCAAGCCGTGTT 60.517 55.556 15.27 0.00 44.83 3.32
2010 2098 2.667536 AGACACTGCAGCAAGCCG 60.668 61.111 15.27 0.00 44.83 5.52
2012 2100 1.575576 CCTGAGACACTGCAGCAAGC 61.576 60.000 15.27 0.55 45.96 4.01
2018 2106 0.972134 CCTTCTCCTGAGACACTGCA 59.028 55.000 0.00 0.00 37.14 4.41
2022 2110 2.230266 GACTCACCTTCTCCTGAGACAC 59.770 54.545 0.00 0.00 37.85 3.67
2023 2111 2.520069 GACTCACCTTCTCCTGAGACA 58.480 52.381 0.00 0.00 37.85 3.41
2044 2132 1.070275 ACCCGAACCGTCAACTTCC 59.930 57.895 0.00 0.00 0.00 3.46
2046 2134 0.812412 CACACCCGAACCGTCAACTT 60.812 55.000 0.00 0.00 0.00 2.66
2047 2135 1.227438 CACACCCGAACCGTCAACT 60.227 57.895 0.00 0.00 0.00 3.16
2069 2157 3.551496 CTCCGGCAAGCCTTCACCA 62.551 63.158 9.73 0.00 0.00 4.17
2070 2158 2.747855 CTCCGGCAAGCCTTCACC 60.748 66.667 9.73 0.00 0.00 4.02
2072 2160 0.038166 ATTTCTCCGGCAAGCCTTCA 59.962 50.000 9.73 0.00 0.00 3.02
2080 2168 0.981183 ACAGGTACATTTCTCCGGCA 59.019 50.000 0.00 0.00 0.00 5.69
2134 2222 4.104831 ACTTCCTGCCTTACTATGTCCTT 58.895 43.478 0.00 0.00 0.00 3.36
2135 2223 3.725634 ACTTCCTGCCTTACTATGTCCT 58.274 45.455 0.00 0.00 0.00 3.85
2136 2224 4.039366 CCTACTTCCTGCCTTACTATGTCC 59.961 50.000 0.00 0.00 0.00 4.02
2137 2225 4.039366 CCCTACTTCCTGCCTTACTATGTC 59.961 50.000 0.00 0.00 0.00 3.06
2138 2226 3.967987 CCCTACTTCCTGCCTTACTATGT 59.032 47.826 0.00 0.00 0.00 2.29
2139 2227 3.244249 GCCCTACTTCCTGCCTTACTATG 60.244 52.174 0.00 0.00 0.00 2.23
2140 2228 2.973406 GCCCTACTTCCTGCCTTACTAT 59.027 50.000 0.00 0.00 0.00 2.12
2142 2230 1.205055 GCCCTACTTCCTGCCTTACT 58.795 55.000 0.00 0.00 0.00 2.24
2143 2231 1.139256 GAGCCCTACTTCCTGCCTTAC 59.861 57.143 0.00 0.00 0.00 2.34
2144 2232 1.008449 AGAGCCCTACTTCCTGCCTTA 59.992 52.381 0.00 0.00 0.00 2.69
2146 2234 0.252927 AAGAGCCCTACTTCCTGCCT 60.253 55.000 0.00 0.00 0.00 4.75
2147 2235 1.139256 GTAAGAGCCCTACTTCCTGCC 59.861 57.143 0.00 0.00 0.00 4.85
2148 2236 1.202428 CGTAAGAGCCCTACTTCCTGC 60.202 57.143 0.00 0.00 43.02 4.85
2149 2237 1.202428 GCGTAAGAGCCCTACTTCCTG 60.202 57.143 0.00 0.00 43.02 3.86
2150 2238 1.112950 GCGTAAGAGCCCTACTTCCT 58.887 55.000 0.00 0.00 43.02 3.36
2152 2314 1.203994 TGTGCGTAAGAGCCCTACTTC 59.796 52.381 0.00 0.00 43.02 3.01
2155 2317 1.136305 TGATGTGCGTAAGAGCCCTAC 59.864 52.381 0.00 0.00 43.02 3.18
2161 2323 0.811616 GCCCCTGATGTGCGTAAGAG 60.812 60.000 0.00 0.00 43.02 2.85
2162 2324 1.220749 GCCCCTGATGTGCGTAAGA 59.779 57.895 0.00 0.00 43.02 2.10
2167 2329 3.626996 TTCTGGCCCCTGATGTGCG 62.627 63.158 0.00 0.00 0.00 5.34
2176 2338 1.802553 TATACTCAGGTTCTGGCCCC 58.197 55.000 0.00 0.00 31.51 5.80
2178 2340 2.628657 ACGATATACTCAGGTTCTGGCC 59.371 50.000 0.00 0.00 31.51 5.36
2179 2341 3.068307 ACACGATATACTCAGGTTCTGGC 59.932 47.826 0.00 0.00 31.51 4.85
2180 2342 4.098044 ACACACGATATACTCAGGTTCTGG 59.902 45.833 0.00 0.00 31.51 3.86
2181 2343 5.066634 AGACACACGATATACTCAGGTTCTG 59.933 44.000 0.00 0.00 0.00 3.02
2182 2344 5.194432 AGACACACGATATACTCAGGTTCT 58.806 41.667 0.00 0.00 0.00 3.01
2184 2346 5.916661 AAGACACACGATATACTCAGGTT 57.083 39.130 0.00 0.00 0.00 3.50
2187 2349 6.061231 TGCTAAGACACACGATATACTCAG 57.939 41.667 0.00 0.00 0.00 3.35
2188 2350 6.635030 ATGCTAAGACACACGATATACTCA 57.365 37.500 0.00 0.00 0.00 3.41
2191 2353 8.639428 CACATAATGCTAAGACACACGATATAC 58.361 37.037 0.00 0.00 0.00 1.47
2192 2354 8.742554 CACATAATGCTAAGACACACGATATA 57.257 34.615 0.00 0.00 0.00 0.86
2193 2355 7.643528 CACATAATGCTAAGACACACGATAT 57.356 36.000 0.00 0.00 0.00 1.63
2195 2357 5.973651 CACATAATGCTAAGACACACGAT 57.026 39.130 0.00 0.00 0.00 3.73
2210 2372 3.463329 ACCATGGGTCTTAGGCACATAAT 59.537 43.478 18.09 0.00 0.00 1.28
2212 2374 2.487775 ACCATGGGTCTTAGGCACATA 58.512 47.619 18.09 0.00 0.00 2.29
2218 2380 2.576191 TCAGGAAACCATGGGTCTTAGG 59.424 50.000 18.09 0.00 33.12 2.69
2219 2381 3.610911 GTCAGGAAACCATGGGTCTTAG 58.389 50.000 18.09 1.01 33.12 2.18
2225 2387 0.036164 TCACGTCAGGAAACCATGGG 59.964 55.000 18.09 0.00 0.00 4.00
2228 2390 0.391597 ACGTCACGTCAGGAAACCAT 59.608 50.000 0.00 0.00 33.69 3.55
2230 2392 0.857287 GAACGTCACGTCAGGAAACC 59.143 55.000 1.67 0.00 39.99 3.27
2231 2393 0.857287 GGAACGTCACGTCAGGAAAC 59.143 55.000 1.67 0.00 39.99 2.78
2234 2396 1.521450 GAGGGAACGTCACGTCAGGA 61.521 60.000 1.67 0.00 43.49 3.86
2237 2399 1.893335 TCGAGGGAACGTCACGTCA 60.893 57.895 1.67 0.00 44.35 4.35
2238 2400 1.441682 GTCGAGGGAACGTCACGTC 60.442 63.158 1.67 0.00 44.35 4.34
2239 2401 0.603707 TAGTCGAGGGAACGTCACGT 60.604 55.000 0.00 0.00 44.35 4.49
2240 2402 0.179205 GTAGTCGAGGGAACGTCACG 60.179 60.000 0.00 0.00 44.35 4.35
2241 2403 0.877071 TGTAGTCGAGGGAACGTCAC 59.123 55.000 0.00 0.00 44.35 3.67
2242 2404 1.608055 TTGTAGTCGAGGGAACGTCA 58.392 50.000 0.00 0.00 44.35 4.35
2243 2405 2.712057 TTTGTAGTCGAGGGAACGTC 57.288 50.000 0.00 0.00 40.21 4.34
2244 2406 3.672767 AATTTGTAGTCGAGGGAACGT 57.327 42.857 0.00 0.00 34.70 3.99
2245 2407 3.991773 TGAAATTTGTAGTCGAGGGAACG 59.008 43.478 0.00 0.00 0.00 3.95
2246 2408 4.143179 CGTGAAATTTGTAGTCGAGGGAAC 60.143 45.833 0.00 0.00 0.00 3.62
2251 2413 4.325472 GGGTACGTGAAATTTGTAGTCGAG 59.675 45.833 0.00 0.00 0.00 4.04
2252 2414 4.236935 GGGTACGTGAAATTTGTAGTCGA 58.763 43.478 0.00 0.00 0.00 4.20
2253 2415 3.368843 GGGGTACGTGAAATTTGTAGTCG 59.631 47.826 0.00 0.00 0.00 4.18
2254 2416 3.686241 GGGGGTACGTGAAATTTGTAGTC 59.314 47.826 0.00 0.00 0.00 2.59
2255 2417 3.678289 GGGGGTACGTGAAATTTGTAGT 58.322 45.455 0.00 0.00 0.00 2.73
2273 2435 1.520666 CTAACAGCCGTACAGGGGG 59.479 63.158 6.00 0.00 41.48 5.40
2274 2436 0.974010 TCCTAACAGCCGTACAGGGG 60.974 60.000 6.00 0.00 41.48 4.79
2275 2437 0.899720 TTCCTAACAGCCGTACAGGG 59.100 55.000 6.00 0.00 41.48 4.45
2276 2438 1.274167 TGTTCCTAACAGCCGTACAGG 59.726 52.381 0.00 0.00 38.80 4.00
2277 2439 2.735134 GTTGTTCCTAACAGCCGTACAG 59.265 50.000 0.00 0.00 43.27 2.74
2278 2440 2.758009 GTTGTTCCTAACAGCCGTACA 58.242 47.619 0.00 0.00 43.27 2.90
2279 2441 1.723003 CGTTGTTCCTAACAGCCGTAC 59.277 52.381 1.76 0.00 43.27 3.67
2280 2442 1.340889 ACGTTGTTCCTAACAGCCGTA 59.659 47.619 14.06 0.00 43.86 4.02
2281 2443 0.105408 ACGTTGTTCCTAACAGCCGT 59.895 50.000 11.39 11.39 43.27 5.68
2282 2444 2.068837 TACGTTGTTCCTAACAGCCG 57.931 50.000 0.00 10.45 43.27 5.52
2283 2445 3.132925 TGTTACGTTGTTCCTAACAGCC 58.867 45.455 0.00 0.00 43.27 4.85
2284 2446 4.689345 AGATGTTACGTTGTTCCTAACAGC 59.311 41.667 5.47 5.47 43.27 4.40
2285 2447 5.924254 TGAGATGTTACGTTGTTCCTAACAG 59.076 40.000 0.00 0.00 43.27 3.16
2286 2448 5.845103 TGAGATGTTACGTTGTTCCTAACA 58.155 37.500 0.00 0.00 40.21 2.41
2287 2449 6.201425 TGTTGAGATGTTACGTTGTTCCTAAC 59.799 38.462 0.00 0.00 0.00 2.34
2288 2450 6.282167 TGTTGAGATGTTACGTTGTTCCTAA 58.718 36.000 0.00 0.00 0.00 2.69
2289 2451 5.845103 TGTTGAGATGTTACGTTGTTCCTA 58.155 37.500 0.00 0.00 0.00 2.94
2290 2452 4.699637 TGTTGAGATGTTACGTTGTTCCT 58.300 39.130 0.00 0.00 0.00 3.36
2291 2453 5.412526 TTGTTGAGATGTTACGTTGTTCC 57.587 39.130 0.00 0.00 0.00 3.62
2292 2454 7.569297 TGTATTGTTGAGATGTTACGTTGTTC 58.431 34.615 0.00 0.00 0.00 3.18
2293 2455 7.485418 TGTATTGTTGAGATGTTACGTTGTT 57.515 32.000 0.00 0.00 0.00 2.83
2294 2456 7.667043 ATGTATTGTTGAGATGTTACGTTGT 57.333 32.000 0.00 0.00 0.00 3.32
2302 2464 9.716531 CTCCACATATATGTATTGTTGAGATGT 57.283 33.333 17.86 0.00 39.39 3.06
2303 2465 9.933723 TCTCCACATATATGTATTGTTGAGATG 57.066 33.333 17.86 1.83 39.39 2.90
2305 2467 9.764363 GTTCTCCACATATATGTATTGTTGAGA 57.236 33.333 17.86 16.50 39.39 3.27
2306 2468 9.546428 TGTTCTCCACATATATGTATTGTTGAG 57.454 33.333 17.86 14.88 39.39 3.02
2307 2469 9.546428 CTGTTCTCCACATATATGTATTGTTGA 57.454 33.333 17.86 8.14 39.39 3.18
2308 2470 9.546428 TCTGTTCTCCACATATATGTATTGTTG 57.454 33.333 17.86 5.06 39.39 3.33
2313 2475 9.775539 AGGTATCTGTTCTCCACATATATGTAT 57.224 33.333 17.86 7.48 39.39 2.29
2315 2477 9.026121 GTAGGTATCTGTTCTCCACATATATGT 57.974 37.037 12.75 12.75 42.84 2.29
2316 2478 8.184848 CGTAGGTATCTGTTCTCCACATATATG 58.815 40.741 11.29 11.29 33.76 1.78
2317 2479 8.107729 TCGTAGGTATCTGTTCTCCACATATAT 58.892 37.037 0.00 0.00 33.76 0.86
2318 2480 7.455891 TCGTAGGTATCTGTTCTCCACATATA 58.544 38.462 0.00 0.00 33.76 0.86
2319 2481 6.304624 TCGTAGGTATCTGTTCTCCACATAT 58.695 40.000 0.00 0.00 33.76 1.78
2320 2482 5.687780 TCGTAGGTATCTGTTCTCCACATA 58.312 41.667 0.00 0.00 33.76 2.29
2321 2483 4.533815 TCGTAGGTATCTGTTCTCCACAT 58.466 43.478 0.00 0.00 33.76 3.21
2335 2497 1.283029 CCTCCCCGGATATCGTAGGTA 59.717 57.143 0.73 0.00 37.11 3.08
2337 2499 0.683504 CCCTCCCCGGATATCGTAGG 60.684 65.000 0.73 0.00 37.11 3.18
2342 2504 0.966370 CGAGTCCCTCCCCGGATATC 60.966 65.000 0.73 0.00 33.48 1.63
2345 2507 4.541648 CCGAGTCCCTCCCCGGAT 62.542 72.222 0.73 0.00 44.29 4.18
2371 2533 0.756815 GCCCAAATCTCCACCCCATC 60.757 60.000 0.00 0.00 0.00 3.51
2372 2534 1.311059 GCCCAAATCTCCACCCCAT 59.689 57.895 0.00 0.00 0.00 4.00
2373 2535 2.770130 GCCCAAATCTCCACCCCA 59.230 61.111 0.00 0.00 0.00 4.96
2376 2539 1.743394 CTAAACGCCCAAATCTCCACC 59.257 52.381 0.00 0.00 0.00 4.61
2390 2553 3.372822 ACATGCGTAATTGGTCCTAAACG 59.627 43.478 0.00 7.05 0.00 3.60
2399 2563 3.069586 TCCCTCTAGACATGCGTAATTGG 59.930 47.826 0.00 0.00 0.00 3.16
2405 2569 2.073252 TCATCCCTCTAGACATGCGT 57.927 50.000 0.00 0.00 0.00 5.24
2406 2570 2.824936 AGATCATCCCTCTAGACATGCG 59.175 50.000 0.00 0.00 0.00 4.73
2421 2585 5.659971 AGCTTAAAATTGCCAAGGAGATCAT 59.340 36.000 0.00 0.00 0.00 2.45
2422 2586 5.018809 AGCTTAAAATTGCCAAGGAGATCA 58.981 37.500 0.00 0.00 0.00 2.92
2423 2587 5.588958 AGCTTAAAATTGCCAAGGAGATC 57.411 39.130 0.00 0.00 0.00 2.75
2430 2594 7.449247 ACCATAGAAAAGCTTAAAATTGCCAA 58.551 30.769 0.00 0.00 0.00 4.52
2464 2628 1.202927 ACTTGCATGTGTAGGGTGCTT 60.203 47.619 4.14 0.00 39.52 3.91
2479 2643 7.439655 CCACTACCTATATTCTTGAAGACTTGC 59.560 40.741 0.00 0.00 0.00 4.01
2487 2651 8.603898 TCACTTTCCACTACCTATATTCTTGA 57.396 34.615 0.00 0.00 0.00 3.02
2489 2653 9.268282 TCTTCACTTTCCACTACCTATATTCTT 57.732 33.333 0.00 0.00 0.00 2.52
2490 2654 8.840200 TCTTCACTTTCCACTACCTATATTCT 57.160 34.615 0.00 0.00 0.00 2.40
2503 2667 9.621629 TTACTTCTACAAAATCTTCACTTTCCA 57.378 29.630 0.00 0.00 0.00 3.53
2516 2680 8.212312 TCCACCATGTACTTTACTTCTACAAAA 58.788 33.333 0.00 0.00 0.00 2.44
2517 2681 7.737869 TCCACCATGTACTTTACTTCTACAAA 58.262 34.615 0.00 0.00 0.00 2.83
2518 2682 7.305813 TCCACCATGTACTTTACTTCTACAA 57.694 36.000 0.00 0.00 0.00 2.41
2519 2683 6.921486 TCCACCATGTACTTTACTTCTACA 57.079 37.500 0.00 0.00 0.00 2.74
2520 2684 6.696148 CGATCCACCATGTACTTTACTTCTAC 59.304 42.308 0.00 0.00 0.00 2.59
2521 2685 6.183360 CCGATCCACCATGTACTTTACTTCTA 60.183 42.308 0.00 0.00 0.00 2.10
2522 2686 5.395324 CCGATCCACCATGTACTTTACTTCT 60.395 44.000 0.00 0.00 0.00 2.85
2523 2687 4.809426 CCGATCCACCATGTACTTTACTTC 59.191 45.833 0.00 0.00 0.00 3.01
2524 2688 4.224370 ACCGATCCACCATGTACTTTACTT 59.776 41.667 0.00 0.00 0.00 2.24
2525 2689 3.773119 ACCGATCCACCATGTACTTTACT 59.227 43.478 0.00 0.00 0.00 2.24
2526 2690 4.117685 GACCGATCCACCATGTACTTTAC 58.882 47.826 0.00 0.00 0.00 2.01
2527 2691 3.181484 CGACCGATCCACCATGTACTTTA 60.181 47.826 0.00 0.00 0.00 1.85
2528 2692 2.418197 CGACCGATCCACCATGTACTTT 60.418 50.000 0.00 0.00 0.00 2.66
2529 2693 1.136305 CGACCGATCCACCATGTACTT 59.864 52.381 0.00 0.00 0.00 2.24
2530 2694 0.744874 CGACCGATCCACCATGTACT 59.255 55.000 0.00 0.00 0.00 2.73
2531 2695 0.458669 ACGACCGATCCACCATGTAC 59.541 55.000 0.00 0.00 0.00 2.90
2532 2696 1.134936 CAACGACCGATCCACCATGTA 60.135 52.381 0.00 0.00 0.00 2.29
2533 2697 0.391130 CAACGACCGATCCACCATGT 60.391 55.000 0.00 0.00 0.00 3.21
2534 2698 1.089481 CCAACGACCGATCCACCATG 61.089 60.000 0.00 0.00 0.00 3.66
2535 2699 1.220749 CCAACGACCGATCCACCAT 59.779 57.895 0.00 0.00 0.00 3.55
2536 2700 1.909287 TCCAACGACCGATCCACCA 60.909 57.895 0.00 0.00 0.00 4.17
2537 2701 1.447314 GTCCAACGACCGATCCACC 60.447 63.158 0.00 0.00 32.40 4.61
2538 2702 4.180496 GTCCAACGACCGATCCAC 57.820 61.111 0.00 0.00 32.40 4.02
2546 2710 4.974989 AACGGCCGGTCCAACGAC 62.975 66.667 31.76 0.00 38.38 4.34
2547 2711 4.973055 CAACGGCCGGTCCAACGA 62.973 66.667 31.76 0.00 35.47 3.85
2549 2713 3.656045 CACAACGGCCGGTCCAAC 61.656 66.667 31.76 0.00 34.01 3.77
2550 2714 4.939368 CCACAACGGCCGGTCCAA 62.939 66.667 31.76 0.00 34.01 3.53
2555 2719 4.715523 ATGTCCCACAACGGCCGG 62.716 66.667 31.76 15.62 0.00 6.13
2556 2720 3.430862 CATGTCCCACAACGGCCG 61.431 66.667 26.86 26.86 0.00 6.13
2557 2721 2.282180 ACATGTCCCACAACGGCC 60.282 61.111 0.00 0.00 0.00 6.13
2558 2722 2.625823 CCACATGTCCCACAACGGC 61.626 63.158 0.00 0.00 0.00 5.68
2559 2723 1.971167 CCCACATGTCCCACAACGG 60.971 63.158 0.00 0.00 0.00 4.44
2560 2724 1.971167 CCCCACATGTCCCACAACG 60.971 63.158 0.00 0.00 0.00 4.10
2561 2725 0.609131 CTCCCCACATGTCCCACAAC 60.609 60.000 0.00 0.00 0.00 3.32
2562 2726 1.065410 ACTCCCCACATGTCCCACAA 61.065 55.000 0.00 0.00 0.00 3.33
2563 2727 1.065410 AACTCCCCACATGTCCCACA 61.065 55.000 0.00 0.00 0.00 4.17
2564 2728 0.609131 CAACTCCCCACATGTCCCAC 60.609 60.000 0.00 0.00 0.00 4.61
2565 2729 1.065410 ACAACTCCCCACATGTCCCA 61.065 55.000 0.00 0.00 0.00 4.37
2566 2730 0.609131 CACAACTCCCCACATGTCCC 60.609 60.000 0.00 0.00 0.00 4.46
2567 2731 0.400213 TCACAACTCCCCACATGTCC 59.600 55.000 0.00 0.00 0.00 4.02
2568 2732 1.813513 CTCACAACTCCCCACATGTC 58.186 55.000 0.00 0.00 0.00 3.06
2569 2733 0.250901 GCTCACAACTCCCCACATGT 60.251 55.000 0.00 0.00 0.00 3.21
2570 2734 1.300971 CGCTCACAACTCCCCACATG 61.301 60.000 0.00 0.00 0.00 3.21
2571 2735 1.003355 CGCTCACAACTCCCCACAT 60.003 57.895 0.00 0.00 0.00 3.21
2572 2736 2.425592 CGCTCACAACTCCCCACA 59.574 61.111 0.00 0.00 0.00 4.17
2573 2737 2.358737 CCGCTCACAACTCCCCAC 60.359 66.667 0.00 0.00 0.00 4.61
2574 2738 3.636231 CCCGCTCACAACTCCCCA 61.636 66.667 0.00 0.00 0.00 4.96
2575 2739 4.410400 CCCCGCTCACAACTCCCC 62.410 72.222 0.00 0.00 0.00 4.81
2577 2741 4.329545 TGCCCCGCTCACAACTCC 62.330 66.667 0.00 0.00 0.00 3.85
2578 2742 2.743928 CTGCCCCGCTCACAACTC 60.744 66.667 0.00 0.00 0.00 3.01
2589 2753 3.705934 GAGGTAAGCAGGCTGCCCC 62.706 68.421 34.33 28.96 46.52 5.80
2590 2754 2.124529 GAGGTAAGCAGGCTGCCC 60.125 66.667 34.33 27.28 46.52 5.36
2591 2755 2.512515 CGAGGTAAGCAGGCTGCC 60.513 66.667 34.33 19.81 46.52 4.85
2592 2756 1.956629 TACCGAGGTAAGCAGGCTGC 61.957 60.000 31.56 31.56 45.46 5.25
2593 2757 0.179108 GTACCGAGGTAAGCAGGCTG 60.179 60.000 10.94 10.94 31.86 4.85
2594 2758 0.613853 TGTACCGAGGTAAGCAGGCT 60.614 55.000 3.21 0.00 31.86 4.58
2595 2759 0.248289 TTGTACCGAGGTAAGCAGGC 59.752 55.000 3.21 0.00 31.86 4.85
2596 2760 2.618053 CTTTGTACCGAGGTAAGCAGG 58.382 52.381 3.21 0.00 31.86 4.85
2597 2761 2.000447 GCTTTGTACCGAGGTAAGCAG 59.000 52.381 18.31 9.68 37.25 4.24
2598 2762 1.670674 CGCTTTGTACCGAGGTAAGCA 60.671 52.381 21.25 8.27 37.17 3.91
2599 2763 0.997196 CGCTTTGTACCGAGGTAAGC 59.003 55.000 14.91 14.91 35.23 3.09
2600 2764 2.527100 CTCGCTTTGTACCGAGGTAAG 58.473 52.381 10.36 1.48 45.20 2.34
2601 2765 2.642139 CTCGCTTTGTACCGAGGTAA 57.358 50.000 10.36 0.00 45.20 2.85
2606 2770 1.823169 AAGGCCTCGCTTTGTACCGA 61.823 55.000 5.23 0.00 0.00 4.69
2607 2771 0.953960 AAAGGCCTCGCTTTGTACCG 60.954 55.000 5.23 0.00 0.00 4.02
2608 2772 0.803117 GAAAGGCCTCGCTTTGTACC 59.197 55.000 5.23 0.00 0.00 3.34
2609 2773 0.803117 GGAAAGGCCTCGCTTTGTAC 59.197 55.000 5.23 0.00 0.00 2.90
2610 2774 0.398696 TGGAAAGGCCTCGCTTTGTA 59.601 50.000 5.23 0.00 37.63 2.41
2611 2775 0.890996 CTGGAAAGGCCTCGCTTTGT 60.891 55.000 5.23 0.00 37.63 2.83
2612 2776 0.606401 TCTGGAAAGGCCTCGCTTTG 60.606 55.000 5.23 0.00 37.63 2.77
2613 2777 0.322008 CTCTGGAAAGGCCTCGCTTT 60.322 55.000 5.23 0.00 37.63 3.51
2614 2778 1.298014 CTCTGGAAAGGCCTCGCTT 59.702 57.895 5.23 0.00 37.63 4.68
2615 2779 2.664081 CCTCTGGAAAGGCCTCGCT 61.664 63.158 5.23 0.00 37.63 4.93
2616 2780 2.124942 CCTCTGGAAAGGCCTCGC 60.125 66.667 5.23 0.00 37.63 5.03
2617 2781 0.972983 TCTCCTCTGGAAAGGCCTCG 60.973 60.000 5.23 0.00 36.29 4.63
2618 2782 1.416030 GATCTCCTCTGGAAAGGCCTC 59.584 57.143 5.23 0.00 36.29 4.70
2619 2783 1.506025 GATCTCCTCTGGAAAGGCCT 58.494 55.000 0.00 0.00 36.29 5.19
2620 2784 0.472044 GGATCTCCTCTGGAAAGGCC 59.528 60.000 0.00 0.00 36.29 5.19
2621 2785 0.472044 GGGATCTCCTCTGGAAAGGC 59.528 60.000 0.00 0.00 36.29 4.35
2622 2786 0.755686 CGGGATCTCCTCTGGAAAGG 59.244 60.000 0.00 0.00 37.81 3.11
2623 2787 1.410882 GTCGGGATCTCCTCTGGAAAG 59.589 57.143 0.00 0.00 35.95 2.62
2624 2788 1.273041 TGTCGGGATCTCCTCTGGAAA 60.273 52.381 0.00 0.00 35.95 3.13
2625 2789 0.335019 TGTCGGGATCTCCTCTGGAA 59.665 55.000 0.00 0.00 35.95 3.53
2626 2790 0.558220 ATGTCGGGATCTCCTCTGGA 59.442 55.000 0.00 0.00 35.95 3.86
2627 2791 0.965439 GATGTCGGGATCTCCTCTGG 59.035 60.000 0.00 0.00 35.95 3.86
2628 2792 0.595588 CGATGTCGGGATCTCCTCTG 59.404 60.000 0.00 0.00 35.95 3.35
2629 2793 1.175983 GCGATGTCGGGATCTCCTCT 61.176 60.000 4.44 0.00 40.23 3.69
2630 2794 1.287503 GCGATGTCGGGATCTCCTC 59.712 63.158 4.44 0.00 40.23 3.71
2631 2795 2.203771 GGCGATGTCGGGATCTCCT 61.204 63.158 4.44 0.00 40.23 3.69
2632 2796 0.894184 TAGGCGATGTCGGGATCTCC 60.894 60.000 4.44 0.00 40.23 3.71
2633 2797 1.135257 CATAGGCGATGTCGGGATCTC 60.135 57.143 4.44 0.00 40.23 2.75
2634 2798 0.891373 CATAGGCGATGTCGGGATCT 59.109 55.000 4.44 0.00 40.23 2.75
2635 2799 0.603569 ACATAGGCGATGTCGGGATC 59.396 55.000 7.47 0.00 46.33 3.36
2636 2800 2.746697 ACATAGGCGATGTCGGGAT 58.253 52.632 7.47 0.00 46.33 3.85
2637 2801 4.270482 ACATAGGCGATGTCGGGA 57.730 55.556 7.47 0.00 46.33 5.14
2643 2807 0.855349 GCAAGACGACATAGGCGATG 59.145 55.000 6.02 6.02 41.79 3.84
2644 2808 3.274393 GCAAGACGACATAGGCGAT 57.726 52.632 0.00 0.00 0.00 4.58
2645 2809 4.806571 GCAAGACGACATAGGCGA 57.193 55.556 0.00 0.00 0.00 5.54
2669 2833 0.874175 TGTTGTCCGAACAGCTGTCG 60.874 55.000 21.95 22.80 37.49 4.35
2670 2834 0.861837 CTGTTGTCCGAACAGCTGTC 59.138 55.000 21.95 12.65 40.80 3.51
2671 2835 2.992089 CTGTTGTCCGAACAGCTGT 58.008 52.632 15.25 15.25 40.80 4.40
2676 2840 2.243957 CGCTGCTGTTGTCCGAACA 61.244 57.895 0.00 0.00 0.00 3.18
2677 2841 2.159272 GACGCTGCTGTTGTCCGAAC 62.159 60.000 0.00 0.00 0.00 3.95
2678 2842 1.954146 GACGCTGCTGTTGTCCGAA 60.954 57.895 0.00 0.00 0.00 4.30
2679 2843 2.355837 GACGCTGCTGTTGTCCGA 60.356 61.111 0.00 0.00 0.00 4.55
2680 2844 3.414700 GGACGCTGCTGTTGTCCG 61.415 66.667 16.92 4.26 42.42 4.79
2682 2846 1.287730 CTCTGGACGCTGCTGTTGTC 61.288 60.000 0.00 8.80 0.00 3.18
2683 2847 1.301244 CTCTGGACGCTGCTGTTGT 60.301 57.895 0.00 0.00 0.00 3.32
2684 2848 2.031516 CCTCTGGACGCTGCTGTTG 61.032 63.158 0.00 0.00 0.00 3.33
2685 2849 2.345244 CCTCTGGACGCTGCTGTT 59.655 61.111 0.00 0.00 0.00 3.16
2686 2850 4.385405 GCCTCTGGACGCTGCTGT 62.385 66.667 0.00 0.00 0.00 4.40
2687 2851 3.602513 AAGCCTCTGGACGCTGCTG 62.603 63.158 0.00 0.00 34.94 4.41
2688 2852 2.888447 AAAGCCTCTGGACGCTGCT 61.888 57.895 0.00 0.00 34.94 4.24
2689 2853 2.359230 AAAGCCTCTGGACGCTGC 60.359 61.111 0.00 0.00 34.94 5.25
2690 2854 2.037136 CCAAAGCCTCTGGACGCTG 61.037 63.158 0.00 0.00 35.85 5.18
2691 2855 2.348998 CCAAAGCCTCTGGACGCT 59.651 61.111 0.00 0.00 35.85 5.07
2692 2856 2.543067 ATCCCAAAGCCTCTGGACGC 62.543 60.000 0.00 0.00 35.85 5.19
2693 2857 0.035056 AATCCCAAAGCCTCTGGACG 60.035 55.000 0.00 0.00 35.85 4.79
2694 2858 1.467920 CAATCCCAAAGCCTCTGGAC 58.532 55.000 0.00 0.00 35.85 4.02
2695 2859 0.332632 CCAATCCCAAAGCCTCTGGA 59.667 55.000 0.00 0.00 35.85 3.86
2696 2860 1.325476 GCCAATCCCAAAGCCTCTGG 61.325 60.000 0.00 0.00 0.00 3.86
2697 2861 0.612732 TGCCAATCCCAAAGCCTCTG 60.613 55.000 0.00 0.00 0.00 3.35
2698 2862 0.337428 ATGCCAATCCCAAAGCCTCT 59.663 50.000 0.00 0.00 0.00 3.69
2699 2863 0.749049 GATGCCAATCCCAAAGCCTC 59.251 55.000 0.00 0.00 0.00 4.70
2700 2864 0.688749 GGATGCCAATCCCAAAGCCT 60.689 55.000 0.00 0.00 46.03 4.58
2701 2865 1.825341 GGATGCCAATCCCAAAGCC 59.175 57.895 0.00 0.00 46.03 4.35
2741 2905 1.135689 CCCTTGGTCAAAAGCGAATCG 60.136 52.381 0.00 0.00 0.00 3.34
2742 2906 1.202348 CCCCTTGGTCAAAAGCGAATC 59.798 52.381 0.00 0.00 0.00 2.52
2743 2907 1.203001 TCCCCTTGGTCAAAAGCGAAT 60.203 47.619 0.00 0.00 0.00 3.34
2744 2908 0.183971 TCCCCTTGGTCAAAAGCGAA 59.816 50.000 0.00 0.00 0.00 4.70
2745 2909 0.250727 CTCCCCTTGGTCAAAAGCGA 60.251 55.000 0.00 0.00 0.00 4.93
2746 2910 1.244019 CCTCCCCTTGGTCAAAAGCG 61.244 60.000 0.00 0.00 0.00 4.68
2747 2911 0.112412 TCCTCCCCTTGGTCAAAAGC 59.888 55.000 0.00 0.00 0.00 3.51
2748 2912 1.547901 GGTCCTCCCCTTGGTCAAAAG 60.548 57.143 0.00 0.00 0.00 2.27
2749 2913 0.481128 GGTCCTCCCCTTGGTCAAAA 59.519 55.000 0.00 0.00 0.00 2.44
2750 2914 1.774894 CGGTCCTCCCCTTGGTCAAA 61.775 60.000 0.00 0.00 0.00 2.69
2751 2915 2.221299 CGGTCCTCCCCTTGGTCAA 61.221 63.158 0.00 0.00 0.00 3.18
2752 2916 2.471084 ATCGGTCCTCCCCTTGGTCA 62.471 60.000 0.00 0.00 0.00 4.02
2753 2917 1.687297 GATCGGTCCTCCCCTTGGTC 61.687 65.000 0.00 0.00 0.00 4.02
2754 2918 1.689582 GATCGGTCCTCCCCTTGGT 60.690 63.158 0.00 0.00 0.00 3.67
2755 2919 2.444256 GGATCGGTCCTCCCCTTGG 61.444 68.421 7.71 0.00 41.60 3.61
2756 2920 3.231298 GGATCGGTCCTCCCCTTG 58.769 66.667 7.71 0.00 41.60 3.61
2764 2928 2.564947 AGCATTCATAGAGGATCGGTCC 59.435 50.000 6.61 6.61 45.45 4.46
2765 2929 3.583806 CAGCATTCATAGAGGATCGGTC 58.416 50.000 0.00 0.00 42.67 4.79
2766 2930 3.674528 CAGCATTCATAGAGGATCGGT 57.325 47.619 0.00 0.00 42.67 4.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.