Multiple sequence alignment - TraesCS2B01G447200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G447200 chr2B 100.000 2210 0 0 1 2210 640102847 640100638 0.000000e+00 4082.0
1 TraesCS2B01G447200 chr2B 84.012 344 40 15 881 1212 640086051 640085711 1.270000e-82 316.0
2 TraesCS2B01G447200 chr2A 84.775 867 63 35 373 1210 679986423 679985597 0.000000e+00 806.0
3 TraesCS2B01G447200 chr2A 88.246 553 41 9 1362 1893 679985567 679985018 6.650000e-180 640.0
4 TraesCS2B01G447200 chr2A 78.268 589 74 35 660 1210 679982807 679982235 1.640000e-86 329.0
5 TraesCS2B01G447200 chr2A 84.722 144 13 7 207 342 679991760 679991618 3.830000e-28 135.0
6 TraesCS2B01G447200 chr7D 94.864 331 15 1 1882 2210 591016000 591015670 1.170000e-142 516.0
7 TraesCS2B01G447200 chr1B 94.242 330 16 2 1883 2210 680319177 680319505 3.280000e-138 501.0
8 TraesCS2B01G447200 chr1B 93.311 299 18 1 1914 2210 680320342 680320640 7.240000e-120 440.0
9 TraesCS2B01G447200 chr1B 92.642 299 20 1 1914 2210 680322613 680322911 1.570000e-116 429.0
10 TraesCS2B01G447200 chr1B 92.642 299 20 1 1914 2210 680323748 680324046 1.570000e-116 429.0
11 TraesCS2B01G447200 chr1B 92.000 300 22 1 1913 2210 680326019 680326318 9.440000e-114 420.0
12 TraesCS2B01G447200 chr7A 92.192 333 22 3 1881 2210 164155590 164155259 3.320000e-128 468.0
13 TraesCS2B01G447200 chr7A 91.843 331 24 2 1883 2210 4591434 4591104 2.000000e-125 459.0
14 TraesCS2B01G447200 chr2D 84.507 497 35 18 343 820 537457544 537457071 9.300000e-124 453.0
15 TraesCS2B01G447200 chr2D 91.667 336 8 7 895 1210 537457074 537456739 4.330000e-122 448.0
16 TraesCS2B01G447200 chr2D 80.571 350 48 14 881 1210 537448544 537448195 3.640000e-63 252.0
17 TraesCS2B01G447200 chr2D 82.707 266 23 13 98 353 537457891 537457639 4.780000e-52 215.0
18 TraesCS2B01G447200 chr2D 90.000 160 6 5 1727 1884 537451599 537451448 4.810000e-47 198.0
19 TraesCS2B01G447200 chr3A 91.515 330 17 6 1883 2210 725913929 725913609 5.600000e-121 444.0
20 TraesCS2B01G447200 chr4D 88.626 211 24 0 1000 1210 487045738 487045948 7.830000e-65 257.0
21 TraesCS2B01G447200 chr5A 88.152 211 25 0 1000 1210 667942001 667942211 3.640000e-63 252.0
22 TraesCS2B01G447200 chr4B 87.558 217 27 0 994 1210 621985443 621985659 3.640000e-63 252.0
23 TraesCS2B01G447200 chr4B 78.774 212 43 2 988 1198 558753865 558753655 8.230000e-30 141.0
24 TraesCS2B01G447200 chr7B 82.759 87 10 5 1796 1878 73233137 73233052 3.040000e-09 73.1
25 TraesCS2B01G447200 chr7B 82.558 86 12 3 1796 1878 73310871 73310786 3.040000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G447200 chr2B 640100638 640102847 2209 True 4082.000000 4082 100.000000 1 2210 1 chr2B.!!$R2 2209
1 TraesCS2B01G447200 chr2A 679982235 679986423 4188 True 591.666667 806 83.763000 373 1893 3 chr2A.!!$R2 1520
2 TraesCS2B01G447200 chr1B 680319177 680326318 7141 False 443.800000 501 92.967400 1883 2210 5 chr1B.!!$F1 327
3 TraesCS2B01G447200 chr2D 537456739 537457891 1152 True 372.000000 453 86.293667 98 1210 3 chr2D.!!$R2 1112
4 TraesCS2B01G447200 chr2D 537448195 537451599 3404 True 225.000000 252 85.285500 881 1884 2 chr2D.!!$R1 1003

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
89 90 0.036388 ATCGACAACATCCAGCCGTT 60.036 50.0 0.0 0.0 0.0 4.44 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1281 3557 0.250727 TTCTGTGCCCCTGTACAAGC 60.251 55.0 0.0 0.91 36.62 4.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.663444 AGCTGTGACGAGCAGAAC 57.337 55.556 9.11 0.00 41.83 3.01
18 19 1.742146 AGCTGTGACGAGCAGAACA 59.258 52.632 9.11 0.00 41.83 3.18
19 20 0.319728 AGCTGTGACGAGCAGAACAT 59.680 50.000 9.11 0.00 41.83 2.71
20 21 0.441533 GCTGTGACGAGCAGAACATG 59.558 55.000 9.12 0.00 38.95 3.21
21 22 1.788258 CTGTGACGAGCAGAACATGT 58.212 50.000 0.00 0.00 36.12 3.21
22 23 1.723542 CTGTGACGAGCAGAACATGTC 59.276 52.381 0.00 0.00 36.12 3.06
23 24 1.341209 TGTGACGAGCAGAACATGTCT 59.659 47.619 0.00 0.00 36.88 3.41
24 25 2.224042 TGTGACGAGCAGAACATGTCTT 60.224 45.455 0.00 0.00 32.70 3.01
26 27 1.127582 GACGAGCAGAACATGTCTTGC 59.872 52.381 20.84 20.84 32.70 4.01
27 28 1.150827 CGAGCAGAACATGTCTTGCA 58.849 50.000 26.64 0.00 32.70 4.08
28 29 1.128136 CGAGCAGAACATGTCTTGCAG 59.872 52.381 26.64 19.17 32.70 4.41
31 32 2.812591 AGCAGAACATGTCTTGCAGAAG 59.187 45.455 26.64 5.29 32.70 2.85
32 33 2.551459 GCAGAACATGTCTTGCAGAAGT 59.449 45.455 22.53 0.00 32.70 3.01
33 34 3.364764 GCAGAACATGTCTTGCAGAAGTC 60.365 47.826 22.53 4.59 32.70 3.01
36 37 3.430042 ACATGTCTTGCAGAAGTCCAT 57.570 42.857 0.00 0.00 0.00 3.41
37 38 3.341823 ACATGTCTTGCAGAAGTCCATC 58.658 45.455 0.00 0.00 0.00 3.51
39 40 3.049708 TGTCTTGCAGAAGTCCATCAG 57.950 47.619 0.00 0.00 0.00 2.90
40 41 1.736681 GTCTTGCAGAAGTCCATCAGC 59.263 52.381 0.00 0.00 32.95 4.26
41 42 1.348696 TCTTGCAGAAGTCCATCAGCA 59.651 47.619 0.00 0.00 39.66 4.41
42 43 2.026542 TCTTGCAGAAGTCCATCAGCAT 60.027 45.455 0.00 0.00 40.80 3.79
43 44 2.034104 TGCAGAAGTCCATCAGCATC 57.966 50.000 0.00 0.00 36.98 3.91
44 45 0.935898 GCAGAAGTCCATCAGCATCG 59.064 55.000 0.00 0.00 32.62 3.84
45 46 0.935898 CAGAAGTCCATCAGCATCGC 59.064 55.000 0.00 0.00 0.00 4.58
46 47 0.829333 AGAAGTCCATCAGCATCGCT 59.171 50.000 0.00 0.00 40.77 4.93
48 49 1.596727 GAAGTCCATCAGCATCGCTTC 59.403 52.381 0.00 0.00 36.40 3.86
49 50 0.829333 AGTCCATCAGCATCGCTTCT 59.171 50.000 0.00 0.00 36.40 2.85
50 51 0.935898 GTCCATCAGCATCGCTTCTG 59.064 55.000 0.00 0.00 36.40 3.02
53 54 1.799403 CCATCAGCATCGCTTCTGATC 59.201 52.381 0.00 0.00 45.35 2.92
54 55 2.548280 CCATCAGCATCGCTTCTGATCT 60.548 50.000 0.00 0.00 45.35 2.75
55 56 2.975732 TCAGCATCGCTTCTGATCTT 57.024 45.000 0.00 0.00 36.40 2.40
56 57 3.257469 TCAGCATCGCTTCTGATCTTT 57.743 42.857 0.00 0.00 36.40 2.52
57 58 3.603532 TCAGCATCGCTTCTGATCTTTT 58.396 40.909 0.00 0.00 36.40 2.27
58 59 4.005650 TCAGCATCGCTTCTGATCTTTTT 58.994 39.130 0.00 0.00 36.40 1.94
59 60 4.093998 TCAGCATCGCTTCTGATCTTTTTC 59.906 41.667 0.00 0.00 36.40 2.29
60 61 3.376546 AGCATCGCTTCTGATCTTTTTCC 59.623 43.478 0.00 0.00 33.89 3.13
61 62 3.127548 GCATCGCTTCTGATCTTTTTCCA 59.872 43.478 0.00 0.00 0.00 3.53
62 63 4.656041 CATCGCTTCTGATCTTTTTCCAC 58.344 43.478 0.00 0.00 0.00 4.02
64 65 3.748048 TCGCTTCTGATCTTTTTCCACTG 59.252 43.478 0.00 0.00 0.00 3.66
65 66 3.499918 CGCTTCTGATCTTTTTCCACTGT 59.500 43.478 0.00 0.00 0.00 3.55
67 68 4.276926 GCTTCTGATCTTTTTCCACTGTGT 59.723 41.667 7.08 0.00 0.00 3.72
68 69 5.561725 GCTTCTGATCTTTTTCCACTGTGTC 60.562 44.000 7.08 0.00 0.00 3.67
72 73 6.205464 TCTGATCTTTTTCCACTGTGTCAATC 59.795 38.462 7.08 1.41 0.00 2.67
73 74 4.811555 TCTTTTTCCACTGTGTCAATCG 57.188 40.909 7.08 0.00 0.00 3.34
74 75 4.447290 TCTTTTTCCACTGTGTCAATCGA 58.553 39.130 7.08 0.00 0.00 3.59
75 76 4.272504 TCTTTTTCCACTGTGTCAATCGAC 59.727 41.667 7.08 0.00 42.93 4.20
85 86 2.813779 GTCAATCGACAACATCCAGC 57.186 50.000 0.00 0.00 42.13 4.85
86 87 1.398390 GTCAATCGACAACATCCAGCC 59.602 52.381 0.00 0.00 42.13 4.85
87 88 0.374758 CAATCGACAACATCCAGCCG 59.625 55.000 0.00 0.00 0.00 5.52
89 90 0.036388 ATCGACAACATCCAGCCGTT 60.036 50.000 0.00 0.00 0.00 4.44
90 91 0.250124 TCGACAACATCCAGCCGTTT 60.250 50.000 0.00 0.00 0.00 3.60
91 92 0.110238 CGACAACATCCAGCCGTTTG 60.110 55.000 0.00 0.00 0.00 2.93
92 93 0.240945 GACAACATCCAGCCGTTTGG 59.759 55.000 0.00 0.00 39.70 3.28
100 101 1.569493 CAGCCGTTTGGAACACGAG 59.431 57.895 0.00 0.00 39.29 4.18
160 161 4.779993 ACTTTCTCTGAAACTGAACCCT 57.220 40.909 0.00 0.00 0.00 4.34
168 169 5.888901 TCTGAAACTGAACCCTACTCTCTA 58.111 41.667 0.00 0.00 0.00 2.43
169 170 6.312529 TCTGAAACTGAACCCTACTCTCTAA 58.687 40.000 0.00 0.00 0.00 2.10
171 172 7.455008 TCTGAAACTGAACCCTACTCTCTAAAT 59.545 37.037 0.00 0.00 0.00 1.40
180 181 5.542635 ACCCTACTCTCTAAATCACACAACA 59.457 40.000 0.00 0.00 0.00 3.33
183 184 4.642429 ACTCTCTAAATCACACAACACCC 58.358 43.478 0.00 0.00 0.00 4.61
184 185 4.003648 CTCTCTAAATCACACAACACCCC 58.996 47.826 0.00 0.00 0.00 4.95
204 205 3.370104 CCTGTACCCACTCTCTCTGAAT 58.630 50.000 0.00 0.00 0.00 2.57
206 207 5.144100 CCTGTACCCACTCTCTCTGAATAT 58.856 45.833 0.00 0.00 0.00 1.28
207 208 5.242838 CCTGTACCCACTCTCTCTGAATATC 59.757 48.000 0.00 0.00 0.00 1.63
209 210 5.830457 TGTACCCACTCTCTCTGAATATCTG 59.170 44.000 0.00 0.00 0.00 2.90
210 211 3.640967 ACCCACTCTCTCTGAATATCTGC 59.359 47.826 0.00 0.00 0.00 4.26
211 212 3.640498 CCCACTCTCTCTGAATATCTGCA 59.360 47.826 0.00 0.00 0.00 4.41
213 214 5.049167 CCACTCTCTCTGAATATCTGCAAC 58.951 45.833 0.00 0.00 0.00 4.17
214 215 5.163426 CCACTCTCTCTGAATATCTGCAACT 60.163 44.000 0.00 0.00 0.00 3.16
254 256 1.610554 CCCCTTACCCACACGATCGT 61.611 60.000 16.60 16.60 0.00 3.73
255 257 0.248289 CCCTTACCCACACGATCGTT 59.752 55.000 20.14 6.29 0.00 3.85
256 258 1.636988 CCTTACCCACACGATCGTTC 58.363 55.000 20.14 0.00 0.00 3.95
288 297 5.248380 AGCACCTCCCAATAAATATCTCC 57.752 43.478 0.00 0.00 0.00 3.71
289 298 4.665009 AGCACCTCCCAATAAATATCTCCA 59.335 41.667 0.00 0.00 0.00 3.86
311 320 2.137177 CTTTCGGGAAAGGGGAGGCA 62.137 60.000 12.30 0.00 42.96 4.75
312 321 2.420466 TTTCGGGAAAGGGGAGGCAC 62.420 60.000 0.00 0.00 0.00 5.01
321 330 0.036875 AGGGGAGGCACGAAGAAAAG 59.963 55.000 0.00 0.00 0.00 2.27
508 633 0.328258 ATTCCCTTCCTTCACACGGG 59.672 55.000 0.00 0.00 36.21 5.28
514 639 3.007635 CCTTCCTTCACACGGGATTTAC 58.992 50.000 0.00 0.00 0.00 2.01
516 641 3.992943 TCCTTCACACGGGATTTACAT 57.007 42.857 0.00 0.00 0.00 2.29
518 643 5.423704 TCCTTCACACGGGATTTACATAA 57.576 39.130 0.00 0.00 0.00 1.90
521 646 6.373216 TCCTTCACACGGGATTTACATAAAAG 59.627 38.462 0.00 0.00 0.00 2.27
559 699 6.643770 CCCAACATGCATAAAGCTTATGATTC 59.356 38.462 12.09 0.00 45.94 2.52
562 702 9.309516 CAACATGCATAAAGCTTATGATTCTTT 57.690 29.630 12.09 0.00 45.94 2.52
622 764 5.532557 CAAAGCTTTCTTGGGAAGTTAAGG 58.467 41.667 9.23 0.00 32.61 2.69
624 766 5.578157 AGCTTTCTTGGGAAGTTAAGGTA 57.422 39.130 0.00 0.00 33.59 3.08
625 767 5.948842 AGCTTTCTTGGGAAGTTAAGGTAA 58.051 37.500 0.00 0.00 33.59 2.85
626 768 6.370453 AGCTTTCTTGGGAAGTTAAGGTAAA 58.630 36.000 0.00 0.00 33.59 2.01
627 769 6.264744 AGCTTTCTTGGGAAGTTAAGGTAAAC 59.735 38.462 0.00 0.00 33.59 2.01
628 770 6.040054 GCTTTCTTGGGAAGTTAAGGTAAACA 59.960 38.462 0.00 0.00 32.61 2.83
629 771 7.417003 GCTTTCTTGGGAAGTTAAGGTAAACAA 60.417 37.037 0.00 0.00 32.61 2.83
630 772 7.957992 TTCTTGGGAAGTTAAGGTAAACAAA 57.042 32.000 0.00 0.00 0.00 2.83
699 842 6.999272 ACATATCCGAGTACAGATTAGTCACT 59.001 38.462 0.00 0.00 0.00 3.41
701 844 6.864360 ATCCGAGTACAGATTAGTCACTAC 57.136 41.667 0.00 0.00 0.00 2.73
806 953 5.246203 ACCAGTACTGTCACACTCACATTAT 59.754 40.000 21.18 0.00 0.00 1.28
814 961 7.931407 ACTGTCACACTCACATTATAGAACAAA 59.069 33.333 0.00 0.00 0.00 2.83
816 963 7.172532 TGTCACACTCACATTATAGAACAAACC 59.827 37.037 0.00 0.00 0.00 3.27
817 964 6.653320 TCACACTCACATTATAGAACAAACCC 59.347 38.462 0.00 0.00 0.00 4.11
819 966 5.943416 CACTCACATTATAGAACAAACCCCA 59.057 40.000 0.00 0.00 0.00 4.96
821 968 5.882040 TCACATTATAGAACAAACCCCACA 58.118 37.500 0.00 0.00 0.00 4.17
823 970 5.014202 ACATTATAGAACAAACCCCACACC 58.986 41.667 0.00 0.00 0.00 4.16
824 971 4.726035 TTATAGAACAAACCCCACACCA 57.274 40.909 0.00 0.00 0.00 4.17
825 972 3.825908 ATAGAACAAACCCCACACCAT 57.174 42.857 0.00 0.00 0.00 3.55
827 974 1.216678 AGAACAAACCCCACACCATGA 59.783 47.619 0.00 0.00 0.00 3.07
829 976 1.923356 ACAAACCCCACACCATGATC 58.077 50.000 0.00 0.00 0.00 2.92
830 977 1.146774 ACAAACCCCACACCATGATCA 59.853 47.619 0.00 0.00 0.00 2.92
831 978 2.225343 ACAAACCCCACACCATGATCAT 60.225 45.455 1.18 1.18 0.00 2.45
832 979 2.833338 CAAACCCCACACCATGATCATT 59.167 45.455 5.16 0.00 0.00 2.57
833 980 2.148446 ACCCCACACCATGATCATTG 57.852 50.000 5.16 5.22 0.00 2.82
834 981 1.640149 ACCCCACACCATGATCATTGA 59.360 47.619 13.42 0.00 0.00 2.57
835 982 2.245546 ACCCCACACCATGATCATTGAT 59.754 45.455 13.42 0.00 0.00 2.57
836 983 2.889045 CCCCACACCATGATCATTGATC 59.111 50.000 17.97 17.97 39.31 2.92
849 996 6.057533 TGATCATTGATCAACCATCTACACC 58.942 40.000 23.72 0.00 44.70 4.16
850 997 5.434182 TCATTGATCAACCATCTACACCA 57.566 39.130 11.07 0.00 31.92 4.17
853 1000 2.909662 TGATCAACCATCTACACCACCA 59.090 45.455 0.00 0.00 31.92 4.17
854 1001 2.851263 TCAACCATCTACACCACCAC 57.149 50.000 0.00 0.00 0.00 4.16
855 1002 2.050918 TCAACCATCTACACCACCACA 58.949 47.619 0.00 0.00 0.00 4.17
856 1003 2.642311 TCAACCATCTACACCACCACAT 59.358 45.455 0.00 0.00 0.00 3.21
858 1005 2.265367 ACCATCTACACCACCACATGA 58.735 47.619 0.00 0.00 0.00 3.07
860 1007 2.270923 CATCTACACCACCACATGACG 58.729 52.381 0.00 0.00 0.00 4.35
861 1008 0.037697 TCTACACCACCACATGACGC 60.038 55.000 0.00 0.00 0.00 5.19
862 1009 1.004320 TACACCACCACATGACGCC 60.004 57.895 0.00 0.00 0.00 5.68
864 1011 1.896183 CACCACCACATGACGCCAA 60.896 57.895 0.00 0.00 0.00 4.52
865 1012 1.896660 ACCACCACATGACGCCAAC 60.897 57.895 0.00 0.00 0.00 3.77
866 1013 2.625823 CCACCACATGACGCCAACC 61.626 63.158 0.00 0.00 0.00 3.77
867 1014 1.600636 CACCACATGACGCCAACCT 60.601 57.895 0.00 0.00 0.00 3.50
868 1015 1.302511 ACCACATGACGCCAACCTC 60.303 57.895 0.00 0.00 0.00 3.85
869 1016 2.040544 CCACATGACGCCAACCTCC 61.041 63.158 0.00 0.00 0.00 4.30
870 1017 2.040544 CACATGACGCCAACCTCCC 61.041 63.158 0.00 0.00 0.00 4.30
871 1018 2.438434 CATGACGCCAACCTCCCC 60.438 66.667 0.00 0.00 0.00 4.81
874 1021 0.694444 ATGACGCCAACCTCCCCTAT 60.694 55.000 0.00 0.00 0.00 2.57
875 1022 0.912487 TGACGCCAACCTCCCCTATT 60.912 55.000 0.00 0.00 0.00 1.73
877 1024 1.823899 CGCCAACCTCCCCTATTGC 60.824 63.158 0.00 0.00 0.00 3.56
879 1026 1.937924 GCCAACCTCCCCTATTGCCT 61.938 60.000 0.00 0.00 0.00 4.75
880 1027 0.183731 CCAACCTCCCCTATTGCCTC 59.816 60.000 0.00 0.00 0.00 4.70
881 1028 0.918983 CAACCTCCCCTATTGCCTCA 59.081 55.000 0.00 0.00 0.00 3.86
884 1031 0.761802 CCTCCCCTATTGCCTCAGTC 59.238 60.000 0.00 0.00 0.00 3.51
885 1032 1.500474 CTCCCCTATTGCCTCAGTCA 58.500 55.000 0.00 0.00 0.00 3.41
886 1033 2.053244 CTCCCCTATTGCCTCAGTCAT 58.947 52.381 0.00 0.00 0.00 3.06
890 3067 2.487986 CCCTATTGCCTCAGTCATTCCC 60.488 54.545 0.00 0.00 0.00 3.97
891 3068 2.487934 CTATTGCCTCAGTCATTCCCG 58.512 52.381 0.00 0.00 0.00 5.14
893 3070 2.892425 GCCTCAGTCATTCCCGCG 60.892 66.667 0.00 0.00 0.00 6.46
924 3161 0.179234 CATATACACGGCCACACCCA 59.821 55.000 2.24 0.00 33.26 4.51
984 3243 1.534175 CGTACGATCCCAGAGCAAGTC 60.534 57.143 10.44 0.00 0.00 3.01
1210 3486 1.418264 TCCACGTCATCCTTGGTTGAA 59.582 47.619 2.36 0.00 0.00 2.69
1212 3488 1.194547 CACGTCATCCTTGGTTGAACG 59.805 52.381 14.73 14.73 0.00 3.95
1214 3490 1.876416 CGTCATCCTTGGTTGAACGGT 60.876 52.381 2.36 0.00 0.00 4.83
1215 3491 2.227194 GTCATCCTTGGTTGAACGGTT 58.773 47.619 0.00 0.00 0.00 4.44
1216 3492 2.031157 GTCATCCTTGGTTGAACGGTTG 60.031 50.000 0.00 0.00 0.00 3.77
1219 3495 0.753848 CCTTGGTTGAACGGTTGGGT 60.754 55.000 0.00 0.00 0.00 4.51
1221 3497 1.605232 CTTGGTTGAACGGTTGGGTAC 59.395 52.381 0.00 0.00 0.00 3.34
1239 3515 2.264480 CGTGTGCGGAGGAATGGA 59.736 61.111 0.00 0.00 0.00 3.41
1240 3516 1.375396 CGTGTGCGGAGGAATGGAA 60.375 57.895 0.00 0.00 0.00 3.53
1241 3517 0.744414 CGTGTGCGGAGGAATGGAAT 60.744 55.000 0.00 0.00 0.00 3.01
1242 3518 0.734889 GTGTGCGGAGGAATGGAATG 59.265 55.000 0.00 0.00 0.00 2.67
1243 3519 1.031571 TGTGCGGAGGAATGGAATGC 61.032 55.000 0.00 0.00 0.00 3.56
1244 3520 1.031571 GTGCGGAGGAATGGAATGCA 61.032 55.000 0.00 0.00 0.00 3.96
1245 3521 1.031571 TGCGGAGGAATGGAATGCAC 61.032 55.000 0.00 0.00 0.00 4.57
1246 3522 1.031571 GCGGAGGAATGGAATGCACA 61.032 55.000 0.00 0.00 0.00 4.57
1247 3523 1.683943 CGGAGGAATGGAATGCACAT 58.316 50.000 0.00 0.00 0.00 3.21
1248 3524 2.026641 CGGAGGAATGGAATGCACATT 58.973 47.619 0.95 0.95 40.98 2.71
1249 3525 2.428171 CGGAGGAATGGAATGCACATTT 59.572 45.455 2.88 0.00 38.57 2.32
1250 3526 3.119029 CGGAGGAATGGAATGCACATTTT 60.119 43.478 2.88 0.00 38.57 1.82
1251 3527 4.436332 GGAGGAATGGAATGCACATTTTC 58.564 43.478 2.88 4.67 38.57 2.29
1252 3528 4.161001 GGAGGAATGGAATGCACATTTTCT 59.839 41.667 2.88 4.46 38.57 2.52
1253 3529 5.334724 AGGAATGGAATGCACATTTTCTC 57.665 39.130 2.88 0.00 38.57 2.87
1254 3530 4.773674 AGGAATGGAATGCACATTTTCTCA 59.226 37.500 2.88 0.00 38.57 3.27
1255 3531 4.866486 GGAATGGAATGCACATTTTCTCAC 59.134 41.667 2.88 0.00 38.57 3.51
1256 3532 3.557577 TGGAATGCACATTTTCTCACG 57.442 42.857 0.00 0.00 0.00 4.35
1257 3533 2.884012 TGGAATGCACATTTTCTCACGT 59.116 40.909 0.00 0.00 0.00 4.49
1258 3534 3.317711 TGGAATGCACATTTTCTCACGTT 59.682 39.130 0.00 0.00 0.00 3.99
1259 3535 3.914364 GGAATGCACATTTTCTCACGTTC 59.086 43.478 0.00 0.00 0.00 3.95
1260 3536 2.661504 TGCACATTTTCTCACGTTCG 57.338 45.000 0.00 0.00 0.00 3.95
1261 3537 1.937223 TGCACATTTTCTCACGTTCGT 59.063 42.857 0.00 0.00 0.00 3.85
1262 3538 2.353269 TGCACATTTTCTCACGTTCGTT 59.647 40.909 0.00 0.00 0.00 3.85
1263 3539 3.181505 TGCACATTTTCTCACGTTCGTTT 60.182 39.130 0.00 0.00 0.00 3.60
1264 3540 3.789224 GCACATTTTCTCACGTTCGTTTT 59.211 39.130 0.00 0.00 0.00 2.43
1265 3541 4.086277 GCACATTTTCTCACGTTCGTTTTC 60.086 41.667 0.00 0.00 0.00 2.29
1266 3542 5.025190 CACATTTTCTCACGTTCGTTTTCA 58.975 37.500 0.00 0.00 0.00 2.69
1267 3543 5.509972 CACATTTTCTCACGTTCGTTTTCAA 59.490 36.000 0.00 0.00 0.00 2.69
1268 3544 5.737290 ACATTTTCTCACGTTCGTTTTCAAG 59.263 36.000 0.00 0.00 0.00 3.02
1269 3545 3.313274 TTCTCACGTTCGTTTTCAAGC 57.687 42.857 0.00 0.00 0.00 4.01
1270 3546 2.546778 TCTCACGTTCGTTTTCAAGCT 58.453 42.857 0.00 0.00 0.00 3.74
1271 3547 2.933906 TCTCACGTTCGTTTTCAAGCTT 59.066 40.909 0.00 0.00 0.00 3.74
1272 3548 3.000925 TCTCACGTTCGTTTTCAAGCTTC 59.999 43.478 0.00 0.00 0.00 3.86
1273 3549 2.031191 TCACGTTCGTTTTCAAGCTTCC 59.969 45.455 0.00 0.00 0.00 3.46
1274 3550 2.031683 CACGTTCGTTTTCAAGCTTCCT 59.968 45.455 0.00 0.00 0.00 3.36
1275 3551 2.031683 ACGTTCGTTTTCAAGCTTCCTG 59.968 45.455 0.00 0.00 0.00 3.86
1276 3552 2.286833 CGTTCGTTTTCAAGCTTCCTGA 59.713 45.455 0.00 0.00 0.00 3.86
1277 3553 3.058914 CGTTCGTTTTCAAGCTTCCTGAT 60.059 43.478 0.00 0.00 0.00 2.90
1278 3554 4.554723 CGTTCGTTTTCAAGCTTCCTGATT 60.555 41.667 0.00 0.00 0.00 2.57
1279 3555 5.281727 GTTCGTTTTCAAGCTTCCTGATTT 58.718 37.500 0.00 0.00 0.00 2.17
1280 3556 6.435428 GTTCGTTTTCAAGCTTCCTGATTTA 58.565 36.000 0.00 0.00 0.00 1.40
1281 3557 6.241207 TCGTTTTCAAGCTTCCTGATTTAG 57.759 37.500 0.00 0.00 0.00 1.85
1282 3558 4.853743 CGTTTTCAAGCTTCCTGATTTAGC 59.146 41.667 0.00 0.00 35.16 3.09
1283 3559 5.335191 CGTTTTCAAGCTTCCTGATTTAGCT 60.335 40.000 0.00 0.00 46.63 3.32
1289 3565 5.165961 AGCTTCCTGATTTAGCTTGTACA 57.834 39.130 0.00 0.00 42.30 2.90
1290 3566 5.181748 AGCTTCCTGATTTAGCTTGTACAG 58.818 41.667 0.00 0.00 42.30 2.74
1291 3567 4.333926 GCTTCCTGATTTAGCTTGTACAGG 59.666 45.833 17.65 17.65 44.02 4.00
1292 3568 4.487714 TCCTGATTTAGCTTGTACAGGG 57.512 45.455 21.03 0.51 43.21 4.45
1293 3569 3.199946 TCCTGATTTAGCTTGTACAGGGG 59.800 47.826 21.03 0.00 43.21 4.79
1294 3570 2.945668 CTGATTTAGCTTGTACAGGGGC 59.054 50.000 7.15 8.09 0.00 5.80
1295 3571 2.307392 TGATTTAGCTTGTACAGGGGCA 59.693 45.455 7.15 0.00 0.00 5.36
1296 3572 2.194201 TTTAGCTTGTACAGGGGCAC 57.806 50.000 7.15 0.00 0.00 5.01
1297 3573 1.060729 TTAGCTTGTACAGGGGCACA 58.939 50.000 7.15 0.00 0.00 4.57
1298 3574 0.613260 TAGCTTGTACAGGGGCACAG 59.387 55.000 7.15 0.00 0.00 3.66
1299 3575 1.127567 AGCTTGTACAGGGGCACAGA 61.128 55.000 7.15 0.00 0.00 3.41
1300 3576 0.250727 GCTTGTACAGGGGCACAGAA 60.251 55.000 7.15 0.00 0.00 3.02
1301 3577 1.813513 CTTGTACAGGGGCACAGAAG 58.186 55.000 0.00 0.00 0.00 2.85
1302 3578 0.250727 TTGTACAGGGGCACAGAAGC 60.251 55.000 0.00 0.00 0.00 3.86
1309 3585 2.437359 GGCACAGAAGCCGAGCAT 60.437 61.111 0.00 0.00 46.12 3.79
1310 3586 2.758089 GGCACAGAAGCCGAGCATG 61.758 63.158 0.00 0.00 46.12 4.06
1311 3587 2.037136 GCACAGAAGCCGAGCATGT 61.037 57.895 0.00 0.00 0.00 3.21
1312 3588 1.580845 GCACAGAAGCCGAGCATGTT 61.581 55.000 0.00 0.00 0.00 2.71
1313 3589 0.445436 CACAGAAGCCGAGCATGTTC 59.555 55.000 0.00 0.00 0.00 3.18
1314 3590 0.322975 ACAGAAGCCGAGCATGTTCT 59.677 50.000 8.01 0.00 0.00 3.01
1315 3591 1.271054 ACAGAAGCCGAGCATGTTCTT 60.271 47.619 8.01 0.00 0.00 2.52
1316 3592 1.396301 CAGAAGCCGAGCATGTTCTTC 59.604 52.381 8.01 5.14 34.84 2.87
1317 3593 1.002430 AGAAGCCGAGCATGTTCTTCA 59.998 47.619 8.01 0.00 36.52 3.02
1318 3594 2.012673 GAAGCCGAGCATGTTCTTCAT 58.987 47.619 8.01 0.00 37.22 2.57
1319 3595 2.119801 AGCCGAGCATGTTCTTCATT 57.880 45.000 8.01 0.00 34.09 2.57
1320 3596 1.741706 AGCCGAGCATGTTCTTCATTG 59.258 47.619 8.01 0.00 34.09 2.82
1321 3597 1.202222 GCCGAGCATGTTCTTCATTGG 60.202 52.381 8.01 1.63 34.09 3.16
1322 3598 1.402968 CCGAGCATGTTCTTCATTGGG 59.597 52.381 8.01 0.00 34.09 4.12
1323 3599 1.202222 CGAGCATGTTCTTCATTGGGC 60.202 52.381 8.01 0.00 34.09 5.36
1324 3600 1.820519 GAGCATGTTCTTCATTGGGCA 59.179 47.619 1.76 0.00 34.09 5.36
1325 3601 2.231964 GAGCATGTTCTTCATTGGGCAA 59.768 45.455 1.76 0.00 34.09 4.52
1326 3602 2.835764 AGCATGTTCTTCATTGGGCAAT 59.164 40.909 0.00 0.00 34.09 3.56
1327 3603 3.262405 AGCATGTTCTTCATTGGGCAATT 59.738 39.130 0.00 0.00 34.09 2.32
1328 3604 4.004982 GCATGTTCTTCATTGGGCAATTT 58.995 39.130 0.00 0.00 34.09 1.82
1329 3605 5.046448 AGCATGTTCTTCATTGGGCAATTTA 60.046 36.000 0.00 0.00 34.09 1.40
1330 3606 5.292589 GCATGTTCTTCATTGGGCAATTTAG 59.707 40.000 0.00 0.00 34.09 1.85
1331 3607 6.400568 CATGTTCTTCATTGGGCAATTTAGT 58.599 36.000 0.00 0.00 34.09 2.24
1332 3608 6.024552 TGTTCTTCATTGGGCAATTTAGTC 57.975 37.500 0.00 0.00 0.00 2.59
1333 3609 5.047377 TGTTCTTCATTGGGCAATTTAGTCC 60.047 40.000 0.00 0.00 0.00 3.85
1334 3610 4.023291 TCTTCATTGGGCAATTTAGTCCC 58.977 43.478 0.00 0.00 40.47 4.46
1335 3611 3.756082 TCATTGGGCAATTTAGTCCCT 57.244 42.857 0.00 0.00 40.69 4.20
1336 3612 3.364549 TCATTGGGCAATTTAGTCCCTG 58.635 45.455 0.00 0.00 40.69 4.45
1337 3613 3.011144 TCATTGGGCAATTTAGTCCCTGA 59.989 43.478 0.00 0.00 40.69 3.86
1338 3614 3.756082 TTGGGCAATTTAGTCCCTGAT 57.244 42.857 0.00 0.00 40.69 2.90
1339 3615 3.756082 TGGGCAATTTAGTCCCTGATT 57.244 42.857 0.00 0.00 40.69 2.57
1340 3616 4.059773 TGGGCAATTTAGTCCCTGATTT 57.940 40.909 0.00 0.00 40.69 2.17
1341 3617 3.768757 TGGGCAATTTAGTCCCTGATTTG 59.231 43.478 0.00 0.00 40.69 2.32
1342 3618 3.430790 GGGCAATTTAGTCCCTGATTTGC 60.431 47.826 6.94 6.94 36.39 3.68
1343 3619 3.448660 GGCAATTTAGTCCCTGATTTGCT 59.551 43.478 12.34 0.00 36.91 3.91
1344 3620 4.644685 GGCAATTTAGTCCCTGATTTGCTA 59.355 41.667 12.34 0.00 36.91 3.49
1345 3621 5.302823 GGCAATTTAGTCCCTGATTTGCTAT 59.697 40.000 12.34 0.00 36.91 2.97
1346 3622 6.183360 GGCAATTTAGTCCCTGATTTGCTATT 60.183 38.462 12.34 0.00 36.91 1.73
1347 3623 7.267857 GCAATTTAGTCCCTGATTTGCTATTT 58.732 34.615 7.81 0.00 35.21 1.40
1348 3624 7.765819 GCAATTTAGTCCCTGATTTGCTATTTT 59.234 33.333 7.81 0.00 35.21 1.82
1349 3625 9.305925 CAATTTAGTCCCTGATTTGCTATTTTC 57.694 33.333 0.00 0.00 0.00 2.29
1350 3626 8.829373 ATTTAGTCCCTGATTTGCTATTTTCT 57.171 30.769 0.00 0.00 0.00 2.52
1351 3627 7.630242 TTAGTCCCTGATTTGCTATTTTCTG 57.370 36.000 0.00 0.00 0.00 3.02
1352 3628 5.819991 AGTCCCTGATTTGCTATTTTCTGA 58.180 37.500 0.00 0.00 0.00 3.27
1353 3629 6.248433 AGTCCCTGATTTGCTATTTTCTGAA 58.752 36.000 0.00 0.00 0.00 3.02
1354 3630 6.376581 AGTCCCTGATTTGCTATTTTCTGAAG 59.623 38.462 0.00 0.00 0.00 3.02
1355 3631 6.151817 GTCCCTGATTTGCTATTTTCTGAAGT 59.848 38.462 0.00 0.00 0.00 3.01
1356 3632 7.336931 GTCCCTGATTTGCTATTTTCTGAAGTA 59.663 37.037 0.00 0.00 0.00 2.24
1357 3633 8.055181 TCCCTGATTTGCTATTTTCTGAAGTAT 58.945 33.333 0.00 0.00 0.00 2.12
1358 3634 8.133627 CCCTGATTTGCTATTTTCTGAAGTATG 58.866 37.037 0.00 0.00 0.00 2.39
1359 3635 8.680903 CCTGATTTGCTATTTTCTGAAGTATGT 58.319 33.333 0.00 0.00 0.00 2.29
1360 3636 9.499585 CTGATTTGCTATTTTCTGAAGTATGTG 57.500 33.333 0.00 0.00 0.00 3.21
1364 3640 9.502091 TTTGCTATTTTCTGAAGTATGTGTAGT 57.498 29.630 0.00 0.00 0.00 2.73
1367 3643 9.760660 GCTATTTTCTGAAGTATGTGTAGTTTG 57.239 33.333 0.00 0.00 0.00 2.93
1376 3652 9.944663 TGAAGTATGTGTAGTTTGAATTTTCAC 57.055 29.630 0.00 0.00 36.83 3.18
1383 3659 6.352547 GTGTAGTTTGAATTTTCACGTACACG 59.647 38.462 15.86 0.00 46.33 4.49
1384 3660 4.839796 AGTTTGAATTTTCACGTACACGG 58.160 39.130 6.72 0.00 44.95 4.94
1389 3668 1.782044 TTTTCACGTACACGGCTACC 58.218 50.000 6.72 0.00 44.95 3.18
1391 3670 0.523072 TTCACGTACACGGCTACCTC 59.477 55.000 6.72 0.00 44.95 3.85
1401 3680 1.133325 ACGGCTACCTCTGATGATCCT 60.133 52.381 0.00 0.00 0.00 3.24
1402 3681 2.108425 ACGGCTACCTCTGATGATCCTA 59.892 50.000 0.00 0.00 0.00 2.94
1407 3686 4.620332 GCTACCTCTGATGATCCTATGTGC 60.620 50.000 0.00 0.00 0.00 4.57
1417 3696 3.005367 TGATCCTATGTGCGCGATCTTTA 59.995 43.478 12.10 0.00 33.72 1.85
1435 3714 7.696872 CGATCTTTAATGTCTCTTAACACGAGA 59.303 37.037 0.00 0.00 35.29 4.04
1439 3718 9.746711 CTTTAATGTCTCTTAACACGAGATTTG 57.253 33.333 0.00 0.00 39.49 2.32
1458 3737 4.826274 TTGCTAGCAACTAGAGGAACAT 57.174 40.909 26.06 0.00 36.26 2.71
1464 3743 2.930887 GCAACTAGAGGAACATGCGTGA 60.931 50.000 14.17 0.00 0.00 4.35
1471 3750 1.964373 GAACATGCGTGACCCGGTT 60.964 57.895 14.17 0.00 36.94 4.44
1490 3769 4.674362 CGGTTATAGCTTTGTTTGGCCTTC 60.674 45.833 3.32 0.00 0.00 3.46
1496 3775 2.747436 CTTTGTTTGGCCTTCTCTTGC 58.253 47.619 3.32 0.00 0.00 4.01
1499 3778 0.038801 GTTTGGCCTTCTCTTGCTGC 60.039 55.000 3.32 0.00 0.00 5.25
1500 3779 0.467844 TTTGGCCTTCTCTTGCTGCA 60.468 50.000 3.32 0.00 0.00 4.41
1501 3780 0.892358 TTGGCCTTCTCTTGCTGCAG 60.892 55.000 10.11 10.11 0.00 4.41
1522 3803 5.156355 CAGAGGTATGTTGTCAAATGCAAC 58.844 41.667 0.00 11.32 44.50 4.17
1546 3827 0.740737 ATCCTTGCTTGTAATGGCGC 59.259 50.000 0.00 0.00 0.00 6.53
1554 3835 2.536803 GCTTGTAATGGCGCAATTGATG 59.463 45.455 20.50 9.51 0.00 3.07
1573 3854 7.583860 TTGATGTTGCATCATTATTTGTGTG 57.416 32.000 11.47 0.00 0.00 3.82
1583 3864 4.022416 TCATTATTTGTGTGACTTGTGCCC 60.022 41.667 0.00 0.00 0.00 5.36
1586 3867 1.774110 TTGTGTGACTTGTGCCCAAT 58.226 45.000 0.00 0.00 0.00 3.16
1593 3874 5.356751 GTGTGACTTGTGCCCAATTGATATA 59.643 40.000 7.12 0.00 0.00 0.86
1597 3878 6.435591 TGACTTGTGCCCAATTGATATAACAA 59.564 34.615 7.12 9.00 0.00 2.83
1609 3890 9.315525 CAATTGATATAACAATGTTGCAATCCA 57.684 29.630 9.15 0.00 39.88 3.41
1621 3902 0.253044 GCAATCCAGAGCACCCACTA 59.747 55.000 0.00 0.00 0.00 2.74
1622 3903 1.340017 GCAATCCAGAGCACCCACTAA 60.340 52.381 0.00 0.00 0.00 2.24
1624 3905 1.656587 ATCCAGAGCACCCACTAACA 58.343 50.000 0.00 0.00 0.00 2.41
1625 3906 1.656587 TCCAGAGCACCCACTAACAT 58.343 50.000 0.00 0.00 0.00 2.71
1627 3908 1.645034 CAGAGCACCCACTAACATCG 58.355 55.000 0.00 0.00 0.00 3.84
1628 3909 0.537188 AGAGCACCCACTAACATCGG 59.463 55.000 0.00 0.00 0.00 4.18
1629 3910 0.249398 GAGCACCCACTAACATCGGT 59.751 55.000 0.00 0.00 0.00 4.69
1653 3944 1.337823 CCAGTCCGGTTCGACATTTCT 60.338 52.381 0.00 0.00 35.07 2.52
1691 3982 3.275617 TCTGGTGTGGTATTGTATGGC 57.724 47.619 0.00 0.00 0.00 4.40
1697 3988 1.266718 GTGGTATTGTATGGCATGCCG 59.733 52.381 30.87 0.00 39.42 5.69
1774 4070 3.002246 GCAAACGACAAGACAACATCAGA 59.998 43.478 0.00 0.00 0.00 3.27
1775 4071 4.319766 GCAAACGACAAGACAACATCAGAT 60.320 41.667 0.00 0.00 0.00 2.90
1776 4072 5.107104 GCAAACGACAAGACAACATCAGATA 60.107 40.000 0.00 0.00 0.00 1.98
1831 4127 9.585099 TGGCAATTTCATGATTAATTCTACAAC 57.415 29.630 0.00 0.00 0.00 3.32
1874 4170 8.725148 ACAATTATTAGCATGCATAACTCTAGC 58.275 33.333 21.98 0.00 0.00 3.42
1887 4796 8.258007 TGCATAACTCTAGCATACCATATTACC 58.742 37.037 0.00 0.00 32.55 2.85
1903 4812 9.010029 ACCATATTACCAAACAGTAAAACAGAG 57.990 33.333 0.00 0.00 35.90 3.35
1956 6243 2.854185 CCTTAACCGTCCGATTACGTTC 59.146 50.000 0.00 0.00 41.27 3.95
1957 6244 3.500982 CTTAACCGTCCGATTACGTTCA 58.499 45.455 0.00 0.00 41.27 3.18
1958 6245 2.437200 AACCGTCCGATTACGTTCAA 57.563 45.000 0.00 0.00 41.27 2.69
1960 6247 2.061028 ACCGTCCGATTACGTTCAAAC 58.939 47.619 0.00 0.00 41.27 2.93
1988 7412 8.338259 CACCATATCTCTTATTCTTTTTGGTCG 58.662 37.037 0.00 0.00 31.66 4.79
2020 9715 5.384063 ACTCATCTGTCCATTATCTAGCG 57.616 43.478 0.00 0.00 0.00 4.26
2046 9741 0.321298 GGCCTGCTCCTCACGTTAAA 60.321 55.000 0.00 0.00 0.00 1.52
2084 9779 2.202544 CGACCTGAGCGCTCTGAC 60.203 66.667 36.85 28.20 0.00 3.51
2085 9780 2.965783 GACCTGAGCGCTCTGACA 59.034 61.111 36.85 19.36 0.00 3.58
2086 9781 1.515020 GACCTGAGCGCTCTGACAT 59.485 57.895 36.85 24.52 0.00 3.06
2093 9788 2.938451 TGAGCGCTCTGACATTAATTGG 59.062 45.455 35.27 0.00 0.00 3.16
2119 9814 8.372521 GGCTTAATTGTTGAAACATGTTAATCG 58.627 33.333 12.39 2.05 38.95 3.34
2129 9824 2.132762 CATGTTAATCGGGCCTACGAC 58.867 52.381 6.23 0.00 46.64 4.34
2161 9856 1.407618 GGCCCGTTCAGTGTTTTTCTT 59.592 47.619 0.00 0.00 0.00 2.52
2180 12147 8.601845 TTTTCTTTCATCTCTTCGTATGTTCA 57.398 30.769 0.00 0.00 0.00 3.18
2182 12149 8.601845 TTCTTTCATCTCTTCGTATGTTCAAA 57.398 30.769 0.00 0.00 0.00 2.69
2184 12151 8.873830 TCTTTCATCTCTTCGTATGTTCAAATC 58.126 33.333 0.00 0.00 0.00 2.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.319728 ATGTTCTGCTCGTCACAGCT 59.680 50.000 1.69 0.00 40.39 4.24
1 2 0.441533 CATGTTCTGCTCGTCACAGC 59.558 55.000 0.00 0.00 40.13 4.40
2 3 1.723542 GACATGTTCTGCTCGTCACAG 59.276 52.381 0.00 0.00 36.44 3.66
4 5 2.071688 AGACATGTTCTGCTCGTCAC 57.928 50.000 0.00 0.00 31.12 3.67
5 6 2.407090 CAAGACATGTTCTGCTCGTCA 58.593 47.619 0.00 0.00 33.46 4.35
6 7 1.127582 GCAAGACATGTTCTGCTCGTC 59.872 52.381 20.17 0.00 33.46 4.20
7 8 1.151668 GCAAGACATGTTCTGCTCGT 58.848 50.000 20.17 0.00 33.46 4.18
8 9 1.128136 CTGCAAGACATGTTCTGCTCG 59.872 52.381 24.88 16.10 34.07 5.03
9 10 2.420642 TCTGCAAGACATGTTCTGCTC 58.579 47.619 24.88 3.72 38.67 4.26
10 11 2.556144 TCTGCAAGACATGTTCTGCT 57.444 45.000 24.88 6.78 38.67 4.24
21 22 1.348696 TGCTGATGGACTTCTGCAAGA 59.651 47.619 14.33 0.00 44.38 3.02
22 23 1.817357 TGCTGATGGACTTCTGCAAG 58.183 50.000 14.33 0.00 44.38 4.01
26 27 0.935898 GCGATGCTGATGGACTTCTG 59.064 55.000 0.00 0.00 0.00 3.02
27 28 0.829333 AGCGATGCTGATGGACTTCT 59.171 50.000 0.00 0.00 37.57 2.85
28 29 1.596727 GAAGCGATGCTGATGGACTTC 59.403 52.381 0.00 0.00 39.62 3.01
31 32 0.935898 CAGAAGCGATGCTGATGGAC 59.064 55.000 1.15 0.00 39.62 4.02
32 33 0.826062 TCAGAAGCGATGCTGATGGA 59.174 50.000 7.43 0.00 39.62 3.41
33 34 1.880271 ATCAGAAGCGATGCTGATGG 58.120 50.000 23.25 0.00 46.86 3.51
36 37 2.975732 AAGATCAGAAGCGATGCTGA 57.024 45.000 14.97 14.97 44.43 4.26
37 38 4.341099 GAAAAAGATCAGAAGCGATGCTG 58.659 43.478 0.93 0.93 39.62 4.41
39 40 3.127548 TGGAAAAAGATCAGAAGCGATGC 59.872 43.478 0.00 0.00 0.00 3.91
40 41 4.394300 AGTGGAAAAAGATCAGAAGCGATG 59.606 41.667 0.00 0.00 0.00 3.84
41 42 4.394300 CAGTGGAAAAAGATCAGAAGCGAT 59.606 41.667 0.00 0.00 0.00 4.58
42 43 3.748048 CAGTGGAAAAAGATCAGAAGCGA 59.252 43.478 0.00 0.00 0.00 4.93
43 44 3.499918 ACAGTGGAAAAAGATCAGAAGCG 59.500 43.478 0.00 0.00 0.00 4.68
44 45 4.276926 ACACAGTGGAAAAAGATCAGAAGC 59.723 41.667 5.31 0.00 0.00 3.86
45 46 5.528690 TGACACAGTGGAAAAAGATCAGAAG 59.471 40.000 5.31 0.00 0.00 2.85
46 47 5.436175 TGACACAGTGGAAAAAGATCAGAA 58.564 37.500 5.31 0.00 0.00 3.02
48 49 5.756195 TTGACACAGTGGAAAAAGATCAG 57.244 39.130 5.31 0.00 0.00 2.90
49 50 5.049474 CGATTGACACAGTGGAAAAAGATCA 60.049 40.000 5.31 0.00 0.00 2.92
50 51 5.179368 TCGATTGACACAGTGGAAAAAGATC 59.821 40.000 5.31 0.00 0.00 2.75
53 54 4.527564 GTCGATTGACACAGTGGAAAAAG 58.472 43.478 8.31 0.00 44.82 2.27
54 55 4.545823 GTCGATTGACACAGTGGAAAAA 57.454 40.909 8.31 0.00 44.82 1.94
67 68 1.737838 GGCTGGATGTTGTCGATTGA 58.262 50.000 0.00 0.00 0.00 2.57
68 69 0.374758 CGGCTGGATGTTGTCGATTG 59.625 55.000 0.00 0.00 0.00 2.67
72 73 0.110238 CAAACGGCTGGATGTTGTCG 60.110 55.000 0.00 0.00 0.00 4.35
73 74 0.240945 CCAAACGGCTGGATGTTGTC 59.759 55.000 0.00 0.00 38.96 3.18
74 75 0.179004 TCCAAACGGCTGGATGTTGT 60.179 50.000 3.75 0.00 40.71 3.32
75 76 0.958091 TTCCAAACGGCTGGATGTTG 59.042 50.000 8.41 0.00 45.03 3.33
76 77 0.958822 GTTCCAAACGGCTGGATGTT 59.041 50.000 8.41 0.00 45.03 2.71
78 79 0.240945 GTGTTCCAAACGGCTGGATG 59.759 55.000 8.41 0.00 45.03 3.51
79 80 1.234615 CGTGTTCCAAACGGCTGGAT 61.235 55.000 8.41 0.00 45.03 3.41
81 82 1.841663 CTCGTGTTCCAAACGGCTGG 61.842 60.000 0.00 0.00 41.34 4.85
84 85 2.251371 GCTCGTGTTCCAAACGGC 59.749 61.111 0.00 0.00 41.34 5.68
85 86 1.164041 AAGGCTCGTGTTCCAAACGG 61.164 55.000 0.00 0.00 41.34 4.44
86 87 0.234884 GAAGGCTCGTGTTCCAAACG 59.765 55.000 0.00 0.00 42.36 3.60
87 88 0.591659 GGAAGGCTCGTGTTCCAAAC 59.408 55.000 0.00 0.00 41.76 2.93
89 90 4.792087 GGAAGGCTCGTGTTCCAA 57.208 55.556 0.00 0.00 41.76 3.53
91 92 1.314730 TTTTGGAAGGCTCGTGTTCC 58.685 50.000 0.00 0.00 42.39 3.62
160 161 5.279809 GGGGTGTTGTGTGATTTAGAGAGTA 60.280 44.000 0.00 0.00 0.00 2.59
168 169 2.452600 ACAGGGGTGTTGTGTGATTT 57.547 45.000 0.00 0.00 0.00 2.17
169 170 2.488347 GGTACAGGGGTGTTGTGTGATT 60.488 50.000 0.00 0.00 0.00 2.57
171 172 0.470766 GGTACAGGGGTGTTGTGTGA 59.529 55.000 0.00 0.00 0.00 3.58
180 181 0.041386 GAGAGAGTGGGTACAGGGGT 59.959 60.000 0.00 0.00 0.00 4.95
183 184 2.516227 TCAGAGAGAGTGGGTACAGG 57.484 55.000 0.00 0.00 0.00 4.00
184 185 6.016360 CAGATATTCAGAGAGAGTGGGTACAG 60.016 46.154 0.00 0.00 0.00 2.74
209 210 2.008329 CCAGATTGCAGAGAGAGTTGC 58.992 52.381 0.00 0.00 40.67 4.17
210 211 2.008329 GCCAGATTGCAGAGAGAGTTG 58.992 52.381 0.00 0.00 0.00 3.16
211 212 1.405256 CGCCAGATTGCAGAGAGAGTT 60.405 52.381 0.00 0.00 0.00 3.01
213 214 0.459078 TCGCCAGATTGCAGAGAGAG 59.541 55.000 0.00 0.00 0.00 3.20
214 215 0.174389 GTCGCCAGATTGCAGAGAGA 59.826 55.000 0.00 0.00 0.00 3.10
254 256 4.415332 GGTGCTCGGCGTCTCGAA 62.415 66.667 6.85 0.00 38.77 3.71
256 258 4.838486 GAGGTGCTCGGCGTCTCG 62.838 72.222 6.85 0.00 0.00 4.04
257 259 4.500116 GGAGGTGCTCGGCGTCTC 62.500 72.222 6.85 7.49 32.44 3.36
264 273 4.899502 AGATATTTATTGGGAGGTGCTCG 58.100 43.478 0.00 0.00 0.00 5.03
288 297 0.323360 TCCCCTTTCCCGAAAGCATG 60.323 55.000 11.03 0.00 44.76 4.06
289 298 0.034089 CTCCCCTTTCCCGAAAGCAT 60.034 55.000 11.03 0.00 44.76 3.79
311 320 8.702163 AATTTTTCATGTGAACTTTTCTTCGT 57.298 26.923 0.00 0.00 33.13 3.85
391 506 1.021390 GCATGCGCACCACTAGTCTT 61.021 55.000 14.90 0.00 38.36 3.01
449 571 0.940126 CCATACTGCATTCACGCCTC 59.060 55.000 0.00 0.00 0.00 4.70
508 633 8.385858 GTTGTACCGTCTCCTTTTATGTAAATC 58.614 37.037 0.00 0.00 0.00 2.17
514 639 3.937079 GGGTTGTACCGTCTCCTTTTATG 59.063 47.826 0.00 0.00 39.83 1.90
516 641 2.971330 TGGGTTGTACCGTCTCCTTTTA 59.029 45.455 0.00 0.00 39.83 1.52
518 643 1.426751 TGGGTTGTACCGTCTCCTTT 58.573 50.000 0.00 0.00 39.83 3.11
521 646 0.393820 TGTTGGGTTGTACCGTCTCC 59.606 55.000 0.00 0.00 39.83 3.71
601 743 4.804597 ACCTTAACTTCCCAAGAAAGCTT 58.195 39.130 0.00 0.00 33.74 3.74
644 786 3.573538 TGTTGTGCAGCAATGGATACTTT 59.426 39.130 0.00 0.00 39.55 2.66
699 842 4.512198 CGTTCATGTACAAAGTTGGTGGTA 59.488 41.667 0.00 0.00 0.00 3.25
701 844 3.562141 TCGTTCATGTACAAAGTTGGTGG 59.438 43.478 0.00 0.00 0.00 4.61
806 953 2.443632 TCATGGTGTGGGGTTTGTTCTA 59.556 45.455 0.00 0.00 0.00 2.10
814 961 1.640149 TCAATGATCATGGTGTGGGGT 59.360 47.619 9.46 0.00 0.00 4.95
816 963 3.558033 TGATCAATGATCATGGTGTGGG 58.442 45.455 20.85 0.00 43.11 4.61
817 964 4.202080 GGTTGATCAATGATCATGGTGTGG 60.202 45.833 24.53 0.00 46.52 4.17
819 966 4.602107 TGGTTGATCAATGATCATGGTGT 58.398 39.130 24.53 0.00 46.52 4.16
821 968 5.702266 AGATGGTTGATCAATGATCATGGT 58.298 37.500 24.53 12.32 46.52 3.55
823 970 7.308408 GGTGTAGATGGTTGATCAATGATCATG 60.308 40.741 24.53 3.97 46.52 3.07
824 971 6.713903 GGTGTAGATGGTTGATCAATGATCAT 59.286 38.462 24.53 11.33 46.52 2.45
825 972 6.057533 GGTGTAGATGGTTGATCAATGATCA 58.942 40.000 20.85 20.85 45.78 2.92
827 974 5.824624 GTGGTGTAGATGGTTGATCAATGAT 59.175 40.000 12.12 6.64 32.86 2.45
829 976 4.336433 GGTGGTGTAGATGGTTGATCAATG 59.664 45.833 12.12 0.00 32.86 2.82
830 977 4.018506 TGGTGGTGTAGATGGTTGATCAAT 60.019 41.667 12.12 0.00 32.86 2.57
831 978 3.329225 TGGTGGTGTAGATGGTTGATCAA 59.671 43.478 3.38 3.38 32.86 2.57
832 979 2.909662 TGGTGGTGTAGATGGTTGATCA 59.090 45.455 0.00 0.00 32.86 2.92
833 980 3.270877 GTGGTGGTGTAGATGGTTGATC 58.729 50.000 0.00 0.00 0.00 2.92
834 981 2.642311 TGTGGTGGTGTAGATGGTTGAT 59.358 45.455 0.00 0.00 0.00 2.57
835 982 2.050918 TGTGGTGGTGTAGATGGTTGA 58.949 47.619 0.00 0.00 0.00 3.18
836 983 2.559698 TGTGGTGGTGTAGATGGTTG 57.440 50.000 0.00 0.00 0.00 3.77
837 984 2.642311 TCATGTGGTGGTGTAGATGGTT 59.358 45.455 0.00 0.00 0.00 3.67
838 985 2.027192 GTCATGTGGTGGTGTAGATGGT 60.027 50.000 0.00 0.00 0.00 3.55
839 986 2.632377 GTCATGTGGTGGTGTAGATGG 58.368 52.381 0.00 0.00 0.00 3.51
840 987 2.270923 CGTCATGTGGTGGTGTAGATG 58.729 52.381 0.00 0.00 0.00 2.90
841 988 1.405526 GCGTCATGTGGTGGTGTAGAT 60.406 52.381 0.00 0.00 0.00 1.98
842 989 0.037697 GCGTCATGTGGTGGTGTAGA 60.038 55.000 0.00 0.00 0.00 2.59
843 990 1.019278 GGCGTCATGTGGTGGTGTAG 61.019 60.000 0.00 0.00 0.00 2.74
844 991 1.004320 GGCGTCATGTGGTGGTGTA 60.004 57.895 0.00 0.00 0.00 2.90
846 993 1.896183 TTGGCGTCATGTGGTGGTG 60.896 57.895 0.00 0.00 0.00 4.17
847 994 1.896660 GTTGGCGTCATGTGGTGGT 60.897 57.895 0.00 0.00 0.00 4.16
849 996 1.577328 GAGGTTGGCGTCATGTGGTG 61.577 60.000 0.00 0.00 0.00 4.17
850 997 1.302511 GAGGTTGGCGTCATGTGGT 60.303 57.895 0.00 0.00 0.00 4.16
853 1000 2.351276 GGGAGGTTGGCGTCATGT 59.649 61.111 0.00 0.00 0.00 3.21
854 1001 1.622607 TAGGGGAGGTTGGCGTCATG 61.623 60.000 0.00 0.00 0.00 3.07
855 1002 0.694444 ATAGGGGAGGTTGGCGTCAT 60.694 55.000 0.00 0.00 0.00 3.06
856 1003 0.912487 AATAGGGGAGGTTGGCGTCA 60.912 55.000 0.00 0.00 0.00 4.35
858 1005 1.607612 CAATAGGGGAGGTTGGCGT 59.392 57.895 0.00 0.00 0.00 5.68
860 1007 1.455773 GGCAATAGGGGAGGTTGGC 60.456 63.158 0.00 0.00 40.42 4.52
861 1008 0.183731 GAGGCAATAGGGGAGGTTGG 59.816 60.000 0.00 0.00 0.00 3.77
862 1009 0.918983 TGAGGCAATAGGGGAGGTTG 59.081 55.000 0.00 0.00 0.00 3.77
864 1011 0.044855 ACTGAGGCAATAGGGGAGGT 59.955 55.000 0.00 0.00 0.00 3.85
865 1012 0.761802 GACTGAGGCAATAGGGGAGG 59.238 60.000 0.00 0.00 0.00 4.30
866 1013 1.500474 TGACTGAGGCAATAGGGGAG 58.500 55.000 0.00 0.00 0.00 4.30
867 1014 2.196742 ATGACTGAGGCAATAGGGGA 57.803 50.000 0.00 0.00 0.00 4.81
868 1015 2.487986 GGAATGACTGAGGCAATAGGGG 60.488 54.545 0.00 0.00 0.00 4.79
869 1016 2.487986 GGGAATGACTGAGGCAATAGGG 60.488 54.545 0.00 0.00 0.00 3.53
870 1017 2.808202 CGGGAATGACTGAGGCAATAGG 60.808 54.545 0.00 0.00 0.00 2.57
871 1018 2.487934 CGGGAATGACTGAGGCAATAG 58.512 52.381 0.00 0.00 0.00 1.73
874 1021 1.377202 GCGGGAATGACTGAGGCAA 60.377 57.895 0.00 0.00 0.00 4.52
875 1022 2.268920 GCGGGAATGACTGAGGCA 59.731 61.111 0.00 0.00 0.00 4.75
877 1024 2.892425 GCGCGGGAATGACTGAGG 60.892 66.667 8.83 0.00 0.00 3.86
879 1026 4.467084 GGGCGCGGGAATGACTGA 62.467 66.667 8.83 0.00 0.00 3.41
880 1027 4.776322 TGGGCGCGGGAATGACTG 62.776 66.667 8.83 0.00 0.00 3.51
881 1028 3.561120 TTTGGGCGCGGGAATGACT 62.561 57.895 8.83 0.00 0.00 3.41
884 1031 3.825611 CCTTTGGGCGCGGGAATG 61.826 66.667 8.83 0.00 0.00 2.67
924 3161 2.574955 GGAGTGTGAGGCCACGAGT 61.575 63.158 5.01 0.00 46.06 4.18
984 3243 1.440893 CATGTCTCCTCTCCGGCAG 59.559 63.158 0.00 0.00 0.00 4.85
1212 3488 3.045492 CGCACACGGTACCCAACC 61.045 66.667 6.25 0.00 45.77 3.77
1222 3498 0.744414 ATTCCATTCCTCCGCACACG 60.744 55.000 0.00 0.00 39.67 4.49
1223 3499 0.734889 CATTCCATTCCTCCGCACAC 59.265 55.000 0.00 0.00 0.00 3.82
1224 3500 1.031571 GCATTCCATTCCTCCGCACA 61.032 55.000 0.00 0.00 0.00 4.57
1225 3501 1.031571 TGCATTCCATTCCTCCGCAC 61.032 55.000 0.00 0.00 0.00 5.34
1226 3502 1.031571 GTGCATTCCATTCCTCCGCA 61.032 55.000 0.00 0.00 0.00 5.69
1228 3504 1.683943 ATGTGCATTCCATTCCTCCG 58.316 50.000 0.00 0.00 0.00 4.63
1229 3505 4.161001 AGAAAATGTGCATTCCATTCCTCC 59.839 41.667 1.89 0.00 31.49 4.30
1230 3506 5.105635 TGAGAAAATGTGCATTCCATTCCTC 60.106 40.000 15.95 15.95 35.15 3.71
1231 3507 4.773674 TGAGAAAATGTGCATTCCATTCCT 59.226 37.500 1.89 3.27 31.49 3.36
1233 3509 4.560035 CGTGAGAAAATGTGCATTCCATTC 59.440 41.667 1.89 0.00 31.49 2.67
1236 3512 2.884012 ACGTGAGAAAATGTGCATTCCA 59.116 40.909 0.00 0.00 0.00 3.53
1237 3513 3.559238 ACGTGAGAAAATGTGCATTCC 57.441 42.857 0.00 0.00 0.00 3.01
1238 3514 3.599514 CGAACGTGAGAAAATGTGCATTC 59.400 43.478 0.00 0.00 0.00 2.67
1239 3515 3.003275 ACGAACGTGAGAAAATGTGCATT 59.997 39.130 0.00 0.00 0.00 3.56
1240 3516 2.548057 ACGAACGTGAGAAAATGTGCAT 59.452 40.909 0.00 0.00 0.00 3.96
1241 3517 1.937223 ACGAACGTGAGAAAATGTGCA 59.063 42.857 0.00 0.00 0.00 4.57
1242 3518 2.663279 ACGAACGTGAGAAAATGTGC 57.337 45.000 0.00 0.00 0.00 4.57
1243 3519 5.025190 TGAAAACGAACGTGAGAAAATGTG 58.975 37.500 0.00 0.00 0.00 3.21
1244 3520 5.224562 TGAAAACGAACGTGAGAAAATGT 57.775 34.783 0.00 0.00 0.00 2.71
1245 3521 5.330792 GCTTGAAAACGAACGTGAGAAAATG 60.331 40.000 0.00 0.00 0.00 2.32
1246 3522 4.733405 GCTTGAAAACGAACGTGAGAAAAT 59.267 37.500 0.00 0.00 0.00 1.82
1247 3523 4.092816 GCTTGAAAACGAACGTGAGAAAA 58.907 39.130 0.00 0.00 0.00 2.29
1248 3524 3.372822 AGCTTGAAAACGAACGTGAGAAA 59.627 39.130 0.00 0.00 0.00 2.52
1249 3525 2.933906 AGCTTGAAAACGAACGTGAGAA 59.066 40.909 0.00 0.00 0.00 2.87
1250 3526 2.546778 AGCTTGAAAACGAACGTGAGA 58.453 42.857 0.00 0.00 0.00 3.27
1251 3527 3.280775 GAAGCTTGAAAACGAACGTGAG 58.719 45.455 2.10 0.00 0.00 3.51
1252 3528 2.031191 GGAAGCTTGAAAACGAACGTGA 59.969 45.455 2.10 0.00 0.00 4.35
1253 3529 2.031683 AGGAAGCTTGAAAACGAACGTG 59.968 45.455 2.10 0.00 0.00 4.49
1254 3530 2.031683 CAGGAAGCTTGAAAACGAACGT 59.968 45.455 2.10 0.00 0.00 3.99
1255 3531 2.286833 TCAGGAAGCTTGAAAACGAACG 59.713 45.455 2.10 0.00 0.00 3.95
1256 3532 3.963383 TCAGGAAGCTTGAAAACGAAC 57.037 42.857 2.10 0.00 0.00 3.95
1257 3533 5.514274 AAATCAGGAAGCTTGAAAACGAA 57.486 34.783 2.10 0.00 0.00 3.85
1258 3534 5.334879 GCTAAATCAGGAAGCTTGAAAACGA 60.335 40.000 2.10 0.00 33.40 3.85
1259 3535 4.853743 GCTAAATCAGGAAGCTTGAAAACG 59.146 41.667 2.10 0.00 33.40 3.60
1260 3536 6.018589 AGCTAAATCAGGAAGCTTGAAAAC 57.981 37.500 2.10 0.00 43.97 2.43
1268 3544 4.333926 CCTGTACAAGCTAAATCAGGAAGC 59.666 45.833 17.47 0.00 43.28 3.86
1269 3545 4.878397 CCCTGTACAAGCTAAATCAGGAAG 59.122 45.833 21.55 8.63 43.28 3.46
1270 3546 4.324254 CCCCTGTACAAGCTAAATCAGGAA 60.324 45.833 21.55 0.00 43.28 3.36
1271 3547 3.199946 CCCCTGTACAAGCTAAATCAGGA 59.800 47.826 21.55 0.00 43.28 3.86
1272 3548 3.545703 CCCCTGTACAAGCTAAATCAGG 58.454 50.000 16.18 16.18 41.17 3.86
1273 3549 2.945668 GCCCCTGTACAAGCTAAATCAG 59.054 50.000 0.00 0.00 0.00 2.90
1274 3550 2.307392 TGCCCCTGTACAAGCTAAATCA 59.693 45.455 12.00 0.00 0.00 2.57
1275 3551 2.683362 GTGCCCCTGTACAAGCTAAATC 59.317 50.000 12.00 0.00 0.00 2.17
1276 3552 2.041081 TGTGCCCCTGTACAAGCTAAAT 59.959 45.455 12.00 0.00 33.92 1.40
1277 3553 1.422024 TGTGCCCCTGTACAAGCTAAA 59.578 47.619 12.00 0.00 33.92 1.85
1278 3554 1.003118 CTGTGCCCCTGTACAAGCTAA 59.997 52.381 12.00 2.16 36.62 3.09
1279 3555 0.613260 CTGTGCCCCTGTACAAGCTA 59.387 55.000 12.00 3.06 36.62 3.32
1280 3556 1.127567 TCTGTGCCCCTGTACAAGCT 61.128 55.000 12.00 0.00 36.62 3.74
1281 3557 0.250727 TTCTGTGCCCCTGTACAAGC 60.251 55.000 0.00 0.91 36.62 4.01
1282 3558 1.813513 CTTCTGTGCCCCTGTACAAG 58.186 55.000 0.00 0.00 36.62 3.16
1283 3559 0.250727 GCTTCTGTGCCCCTGTACAA 60.251 55.000 0.00 0.00 36.62 2.41
1284 3560 1.374947 GCTTCTGTGCCCCTGTACA 59.625 57.895 0.00 0.00 35.67 2.90
1285 3561 1.377333 GGCTTCTGTGCCCCTGTAC 60.377 63.158 0.00 0.00 46.82 2.90
1286 3562 3.077907 GGCTTCTGTGCCCCTGTA 58.922 61.111 0.00 0.00 46.82 2.74
1293 3569 1.580845 AACATGCTCGGCTTCTGTGC 61.581 55.000 0.00 0.00 0.00 4.57
1294 3570 0.445436 GAACATGCTCGGCTTCTGTG 59.555 55.000 0.00 0.00 0.00 3.66
1295 3571 0.322975 AGAACATGCTCGGCTTCTGT 59.677 50.000 0.00 0.00 0.00 3.41
1296 3572 1.396301 GAAGAACATGCTCGGCTTCTG 59.604 52.381 0.00 0.00 33.87 3.02
1297 3573 1.002430 TGAAGAACATGCTCGGCTTCT 59.998 47.619 0.00 0.00 36.73 2.85
1298 3574 1.442769 TGAAGAACATGCTCGGCTTC 58.557 50.000 0.00 0.00 36.42 3.86
1299 3575 2.119801 ATGAAGAACATGCTCGGCTT 57.880 45.000 0.00 0.00 37.87 4.35
1300 3576 1.741706 CAATGAAGAACATGCTCGGCT 59.258 47.619 0.00 0.00 39.39 5.52
1301 3577 1.202222 CCAATGAAGAACATGCTCGGC 60.202 52.381 0.00 0.00 39.39 5.54
1302 3578 1.402968 CCCAATGAAGAACATGCTCGG 59.597 52.381 0.00 0.00 39.39 4.63
1303 3579 1.202222 GCCCAATGAAGAACATGCTCG 60.202 52.381 0.00 0.00 39.39 5.03
1304 3580 1.820519 TGCCCAATGAAGAACATGCTC 59.179 47.619 0.00 0.00 39.39 4.26
1305 3581 1.927487 TGCCCAATGAAGAACATGCT 58.073 45.000 0.00 0.00 39.39 3.79
1306 3582 2.747396 TTGCCCAATGAAGAACATGC 57.253 45.000 0.00 0.00 39.39 4.06
1307 3583 6.400568 ACTAAATTGCCCAATGAAGAACATG 58.599 36.000 0.00 0.00 39.39 3.21
1308 3584 6.351286 GGACTAAATTGCCCAATGAAGAACAT 60.351 38.462 8.84 0.00 41.45 2.71
1309 3585 5.047377 GGACTAAATTGCCCAATGAAGAACA 60.047 40.000 8.84 0.00 0.00 3.18
1310 3586 5.410924 GGACTAAATTGCCCAATGAAGAAC 58.589 41.667 8.84 4.47 0.00 3.01
1311 3587 4.466015 GGGACTAAATTGCCCAATGAAGAA 59.534 41.667 0.00 0.00 41.64 2.52
1312 3588 4.023291 GGGACTAAATTGCCCAATGAAGA 58.977 43.478 0.00 0.00 41.64 2.87
1313 3589 4.026052 AGGGACTAAATTGCCCAATGAAG 58.974 43.478 0.00 0.00 44.55 3.02
1314 3590 3.768757 CAGGGACTAAATTGCCCAATGAA 59.231 43.478 0.00 0.00 44.55 2.57
1315 3591 3.011144 TCAGGGACTAAATTGCCCAATGA 59.989 43.478 0.00 0.00 44.55 2.57
1316 3592 3.364549 TCAGGGACTAAATTGCCCAATG 58.635 45.455 0.00 0.00 44.55 2.82
1317 3593 3.756082 TCAGGGACTAAATTGCCCAAT 57.244 42.857 0.00 0.00 44.55 3.16
1318 3594 3.756082 ATCAGGGACTAAATTGCCCAA 57.244 42.857 0.00 0.00 44.55 4.12
1319 3595 3.756082 AATCAGGGACTAAATTGCCCA 57.244 42.857 0.00 0.00 44.55 5.36
1320 3596 3.430790 GCAAATCAGGGACTAAATTGCCC 60.431 47.826 0.00 0.00 40.71 5.36
1321 3597 3.448660 AGCAAATCAGGGACTAAATTGCC 59.551 43.478 0.00 0.00 44.60 4.52
1322 3598 4.725790 AGCAAATCAGGGACTAAATTGC 57.274 40.909 0.00 0.00 44.18 3.56
1323 3599 9.305925 GAAAATAGCAAATCAGGGACTAAATTG 57.694 33.333 0.00 0.00 36.02 2.32
1324 3600 9.259832 AGAAAATAGCAAATCAGGGACTAAATT 57.740 29.630 0.00 0.00 36.02 1.82
1325 3601 8.689972 CAGAAAATAGCAAATCAGGGACTAAAT 58.310 33.333 0.00 0.00 36.02 1.40
1326 3602 7.888021 TCAGAAAATAGCAAATCAGGGACTAAA 59.112 33.333 0.00 0.00 36.02 1.85
1327 3603 7.402054 TCAGAAAATAGCAAATCAGGGACTAA 58.598 34.615 0.00 0.00 36.02 2.24
1328 3604 6.957631 TCAGAAAATAGCAAATCAGGGACTA 58.042 36.000 0.00 0.00 36.02 2.59
1329 3605 5.819991 TCAGAAAATAGCAAATCAGGGACT 58.180 37.500 0.00 0.00 43.88 3.85
1330 3606 6.151817 ACTTCAGAAAATAGCAAATCAGGGAC 59.848 38.462 0.00 0.00 0.00 4.46
1331 3607 6.248433 ACTTCAGAAAATAGCAAATCAGGGA 58.752 36.000 0.00 0.00 0.00 4.20
1332 3608 6.521151 ACTTCAGAAAATAGCAAATCAGGG 57.479 37.500 0.00 0.00 0.00 4.45
1333 3609 8.680903 ACATACTTCAGAAAATAGCAAATCAGG 58.319 33.333 0.00 0.00 0.00 3.86
1334 3610 9.499585 CACATACTTCAGAAAATAGCAAATCAG 57.500 33.333 0.00 0.00 0.00 2.90
1335 3611 9.013229 ACACATACTTCAGAAAATAGCAAATCA 57.987 29.630 0.00 0.00 0.00 2.57
1338 3614 9.502091 ACTACACATACTTCAGAAAATAGCAAA 57.498 29.630 0.00 0.00 0.00 3.68
1339 3615 9.502091 AACTACACATACTTCAGAAAATAGCAA 57.498 29.630 0.00 0.00 0.00 3.91
1340 3616 9.502091 AAACTACACATACTTCAGAAAATAGCA 57.498 29.630 0.00 0.00 0.00 3.49
1341 3617 9.760660 CAAACTACACATACTTCAGAAAATAGC 57.239 33.333 0.00 0.00 0.00 2.97
1350 3626 9.944663 GTGAAAATTCAAACTACACATACTTCA 57.055 29.630 0.00 0.00 39.21 3.02
1351 3627 9.103048 CGTGAAAATTCAAACTACACATACTTC 57.897 33.333 0.00 0.00 39.21 3.01
1352 3628 8.617809 ACGTGAAAATTCAAACTACACATACTT 58.382 29.630 0.00 0.00 39.21 2.24
1353 3629 8.149973 ACGTGAAAATTCAAACTACACATACT 57.850 30.769 0.00 0.00 39.21 2.12
1354 3630 9.309796 GTACGTGAAAATTCAAACTACACATAC 57.690 33.333 0.00 0.00 39.21 2.39
1355 3631 9.043079 TGTACGTGAAAATTCAAACTACACATA 57.957 29.630 0.00 0.00 39.21 2.29
1356 3632 7.853929 GTGTACGTGAAAATTCAAACTACACAT 59.146 33.333 20.78 0.00 39.86 3.21
1357 3633 7.181418 GTGTACGTGAAAATTCAAACTACACA 58.819 34.615 20.78 9.92 39.86 3.72
1358 3634 6.352547 CGTGTACGTGAAAATTCAAACTACAC 59.647 38.462 18.37 18.37 39.21 2.90
1359 3635 6.412460 CGTGTACGTGAAAATTCAAACTACA 58.588 36.000 0.00 2.05 39.21 2.74
1360 3636 5.842327 CCGTGTACGTGAAAATTCAAACTAC 59.158 40.000 0.00 0.00 39.21 2.73
1364 3640 3.312973 AGCCGTGTACGTGAAAATTCAAA 59.687 39.130 0.00 0.00 39.21 2.69
1367 3643 3.181527 GGTAGCCGTGTACGTGAAAATTC 60.182 47.826 0.00 0.00 37.74 2.17
1376 3652 1.022735 ATCAGAGGTAGCCGTGTACG 58.977 55.000 0.00 0.00 39.44 3.67
1383 3659 4.081752 CACATAGGATCATCAGAGGTAGCC 60.082 50.000 0.00 0.00 0.00 3.93
1384 3660 4.620332 GCACATAGGATCATCAGAGGTAGC 60.620 50.000 0.00 0.00 0.00 3.58
1389 3668 2.335752 GCGCACATAGGATCATCAGAG 58.664 52.381 0.30 0.00 0.00 3.35
1391 3670 1.066136 CGCGCACATAGGATCATCAG 58.934 55.000 8.75 0.00 0.00 2.90
1401 3680 4.368315 AGACATTAAAGATCGCGCACATA 58.632 39.130 8.75 0.00 0.00 2.29
1402 3681 3.198068 AGACATTAAAGATCGCGCACAT 58.802 40.909 8.75 0.00 0.00 3.21
1407 3686 6.403615 GTGTTAAGAGACATTAAAGATCGCG 58.596 40.000 0.00 0.00 0.00 5.87
1417 3696 5.934625 AGCAAATCTCGTGTTAAGAGACATT 59.065 36.000 0.00 0.00 46.12 2.71
1435 3714 5.165961 TGTTCCTCTAGTTGCTAGCAAAT 57.834 39.130 30.53 30.53 37.70 2.32
1439 3718 2.869192 GCATGTTCCTCTAGTTGCTAGC 59.131 50.000 8.10 8.10 34.36 3.42
1458 3737 1.142314 GCTATAACCGGGTCACGCA 59.858 57.895 6.32 0.00 42.52 5.24
1464 3743 3.086282 CCAAACAAAGCTATAACCGGGT 58.914 45.455 6.32 0.00 0.00 5.28
1471 3750 5.179452 AGAGAAGGCCAAACAAAGCTATA 57.821 39.130 5.01 0.00 0.00 1.31
1490 3769 2.676839 CAACATACCTCTGCAGCAAGAG 59.323 50.000 9.47 12.51 42.90 2.85
1496 3775 4.673580 GCATTTGACAACATACCTCTGCAG 60.674 45.833 7.63 7.63 0.00 4.41
1499 3778 5.156355 GTTGCATTTGACAACATACCTCTG 58.844 41.667 1.95 0.00 45.35 3.35
1500 3779 5.376854 GTTGCATTTGACAACATACCTCT 57.623 39.130 1.95 0.00 45.35 3.69
1546 3827 8.661257 ACACAAATAATGATGCAACATCAATTG 58.339 29.630 10.16 15.55 0.00 2.32
1554 3835 6.642131 ACAAGTCACACAAATAATGATGCAAC 59.358 34.615 0.00 0.00 0.00 4.17
1560 3841 4.022416 GGGCACAAGTCACACAAATAATGA 60.022 41.667 0.00 0.00 0.00 2.57
1565 3846 1.774110 TGGGCACAAGTCACACAAAT 58.226 45.000 0.00 0.00 0.00 2.32
1573 3854 6.449635 TGTTATATCAATTGGGCACAAGTC 57.550 37.500 7.78 0.00 40.49 3.01
1583 3864 9.315525 TGGATTGCAACATTGTTATATCAATTG 57.684 29.630 0.00 0.00 36.10 2.32
1586 3867 8.291191 TCTGGATTGCAACATTGTTATATCAA 57.709 30.769 0.00 5.22 0.00 2.57
1593 3874 2.629137 TGCTCTGGATTGCAACATTGTT 59.371 40.909 0.00 0.00 36.15 2.83
1597 3878 1.180029 GGTGCTCTGGATTGCAACAT 58.820 50.000 0.00 0.00 45.32 2.71
1609 3890 0.537188 CCGATGTTAGTGGGTGCTCT 59.463 55.000 0.00 0.00 0.00 4.09
1628 3909 2.048503 CGAACCGGACTGGGTGAC 60.049 66.667 9.46 0.00 38.35 3.67
1629 3910 2.203523 TCGAACCGGACTGGGTGA 60.204 61.111 9.46 0.00 38.35 4.02
1668 3959 4.644685 GCCATACAATACCACACCAGATTT 59.355 41.667 0.00 0.00 0.00 2.17
1691 3982 3.829886 ACATTTGAACTACACGGCATG 57.170 42.857 0.00 0.00 0.00 4.06
1697 3988 6.420008 ACAACGAGTCTACATTTGAACTACAC 59.580 38.462 0.00 0.00 0.00 2.90
1775 4071 9.984190 TTCAACACATTGTGTATTGTACTACTA 57.016 29.630 22.04 0.00 46.79 1.82
1776 4072 8.896320 TTCAACACATTGTGTATTGTACTACT 57.104 30.769 22.04 0.42 46.79 2.57
1887 4796 5.931441 AGCTAGCTCTGTTTTACTGTTTG 57.069 39.130 12.68 0.00 0.00 2.93
1903 4812 0.757188 TGTGAGGGCTCCTAGCTAGC 60.757 60.000 15.74 6.62 41.99 3.42
1956 6243 6.851222 AGAATAAGAGATATGGTGCGTTTG 57.149 37.500 0.00 0.00 0.00 2.93
1957 6244 7.865706 AAAGAATAAGAGATATGGTGCGTTT 57.134 32.000 0.00 0.00 0.00 3.60
1958 6245 7.865706 AAAAGAATAAGAGATATGGTGCGTT 57.134 32.000 0.00 0.00 0.00 4.84
1960 6247 7.134815 CCAAAAAGAATAAGAGATATGGTGCG 58.865 38.462 0.00 0.00 0.00 5.34
1961 6248 8.000780 ACCAAAAAGAATAAGAGATATGGTGC 57.999 34.615 0.00 0.00 36.19 5.01
1966 6253 7.715686 GGGACGACCAAAAAGAATAAGAGATAT 59.284 37.037 6.20 0.00 39.85 1.63
1967 6254 7.046033 GGGACGACCAAAAAGAATAAGAGATA 58.954 38.462 6.20 0.00 39.85 1.98
1988 7412 1.134560 GACAGATGAGTACGGTGGGAC 59.865 57.143 0.00 0.00 0.00 4.46
2020 9715 1.137282 GTGAGGAGCAGGCCTAGTTAC 59.863 57.143 3.98 0.00 38.73 2.50
2046 9741 3.473647 TGCAGAGCAGCGGCCTAT 61.474 61.111 4.82 0.00 42.56 2.57
2084 9779 8.997323 TGTTTCAACAATTAAGCCCAATTAATG 58.003 29.630 0.00 0.00 35.91 1.90
2085 9780 9.737844 ATGTTTCAACAATTAAGCCCAATTAAT 57.262 25.926 0.00 0.00 43.03 1.40
2086 9781 8.997323 CATGTTTCAACAATTAAGCCCAATTAA 58.003 29.630 0.00 0.00 43.03 1.40
2093 9788 8.372521 CGATTAACATGTTTCAACAATTAAGCC 58.627 33.333 17.78 0.00 43.03 4.35
2119 9814 0.459759 GCTTACACAGTCGTAGGCCC 60.460 60.000 0.00 0.00 38.23 5.80
2129 9824 2.509336 CGGGCCTCGCTTACACAG 60.509 66.667 0.84 0.00 0.00 3.66
2161 9856 7.033185 TCGATTTGAACATACGAAGAGATGAA 58.967 34.615 0.00 0.00 0.00 2.57
2180 12147 0.543749 CCCCTCTGCCTTCTCGATTT 59.456 55.000 0.00 0.00 0.00 2.17
2182 12149 2.439104 GCCCCTCTGCCTTCTCGAT 61.439 63.158 0.00 0.00 0.00 3.59
2184 12151 4.521062 CGCCCCTCTGCCTTCTCG 62.521 72.222 0.00 0.00 0.00 4.04


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.