AutoCloner

Multiple sequence alignment - TraesCS2B01G446600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS2B01G446600	chr2B	100.000	2708	0	0	1	2708	639232713	639235420	0.000000e+00	5001
1	TraesCS2B01G446600	chr2B	95.618	2647	91	13	81	2708	238637518	238634878	0.000000e+00	4222
2	TraesCS2B01G446600	chr2B	93.833	1962	102	16	81	2031	138440789	138438836	0.000000e+00	2935
3	TraesCS2B01G446600	chr2B	95.620	1781	74	4	931	2708	451926330	451928109	0.000000e+00	2854
4	TraesCS2B01G446600	chr1B	95.294	2656	94	16	81	2708	543032579	543029927	0.000000e+00	4183
5	TraesCS2B01G446600	chr1B	95.254	2655	96	16	81	2708	543037927	543035276	0.000000e+00	4178
6	TraesCS2B01G446600	chr1B	95.468	2405	102	7	309	2708	595615532	595613130	0.000000e+00	3831
7	TraesCS2B01G446600	chr1B	96.833	884	19	7	81	959	689675860	689674981	0.000000e+00	1469
8	TraesCS2B01G446600	chr3D	95.564	1781	73	5	931	2708	147685316	147683539	0.000000e+00	2846
9	TraesCS2B01G446600	chr5D	95.455	1782	76	5	931	2708	168227455	168225675	0.000000e+00	2837
10	TraesCS2B01G446600	chr6D	95.284	1781	79	5	931	2708	31846064	31847842	0.000000e+00	2819
11	TraesCS2B01G446600	chr6D	95.284	1781	79	5	931	2708	35498674	35500452	0.000000e+00	2819
12	TraesCS2B01G446600	chr2D	95.134	1788	76	7	931	2708	394542680	394544466	0.000000e+00	2809
13	TraesCS2B01G446600	chr7D	95.123	1784	80	5	931	2708	235978753	235976971	0.000000e+00	2806
14	TraesCS2B01G446600	chr3B	96.544	1331	38	7	81	1405	454883357	454882029	0.000000e+00	2196
15	TraesCS2B01G446600	chr3B	97.727	88	0	2	1	87	785374966	785375052	1.680000e-32	150
16	TraesCS2B01G446600	chr4B	95.176	1389	53	13	81	1458	534272743	534271358	0.000000e+00	2182
17	TraesCS2B01G446600	chr4B	100.000	83	0	0	1	83	192278233	192278315	1.300000e-33	154
18	TraesCS2B01G446600	chr7A	96.080	1250	26	8	81	1325	117300	116069	0.000000e+00	2015
19	TraesCS2B01G446600	chr7B	95.699	93	4	0	1	93	297450785	297450877	1.680000e-32	150
20	TraesCS2B01G446600	chr7B	94.624	93	4	1	1	92	2012147	2012239	2.810000e-30	143
21	TraesCS2B01G446600	chr6B	96.667	90	3	0	1	90	685736100	685736011	1.680000e-32	150
22	TraesCS2B01G446600	chr5A	97.727	88	1	1	1	88	108844604	108844690	1.680000e-32	150
23	TraesCS2B01G446600	chr5A	96.629	89	3	0	1	89	278980257	278980169	6.040000e-32	148
24	TraesCS2B01G446600	chr1A	97.674	86	2	0	1	86	330818183	330818268	6.040000e-32	148
25	TraesCS2B01G446600	chr1A	96.667	90	2	1	1	90	588918425	588918337	6.040000e-32	148

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS2B01G446600	chr2B	639232713	639235420	2707	False	5001.0	5001	100.000	1	2708	1	chr2B.!!$F2	2707
1	TraesCS2B01G446600	chr2B	238634878	238637518	2640	True	4222.0	4222	95.618	81	2708	1	chr2B.!!$R2	2627
2	TraesCS2B01G446600	chr2B	138438836	138440789	1953	True	2935.0	2935	93.833	81	2031	1	chr2B.!!$R1	1950
3	TraesCS2B01G446600	chr2B	451926330	451928109	1779	False	2854.0	2854	95.620	931	2708	1	chr2B.!!$F1	1777
4	TraesCS2B01G446600	chr1B	543029927	543037927	8000	True	4180.5	4183	95.274	81	2708	2	chr1B.!!$R3	2627
5	TraesCS2B01G446600	chr1B	595613130	595615532	2402	True	3831.0	3831	95.468	309	2708	1	chr1B.!!$R1	2399
6	TraesCS2B01G446600	chr1B	689674981	689675860	879	True	1469.0	1469	96.833	81	959	1	chr1B.!!$R2	878
7	TraesCS2B01G446600	chr3D	147683539	147685316	1777	True	2846.0	2846	95.564	931	2708	1	chr3D.!!$R1	1777
8	TraesCS2B01G446600	chr5D	168225675	168227455	1780	True	2837.0	2837	95.455	931	2708	1	chr5D.!!$R1	1777
9	TraesCS2B01G446600	chr6D	31846064	31847842	1778	False	2819.0	2819	95.284	931	2708	1	chr6D.!!$F1	1777
10	TraesCS2B01G446600	chr6D	35498674	35500452	1778	False	2819.0	2819	95.284	931	2708	1	chr6D.!!$F2	1777
11	TraesCS2B01G446600	chr2D	394542680	394544466	1786	False	2809.0	2809	95.134	931	2708	1	chr2D.!!$F1	1777
12	TraesCS2B01G446600	chr7D	235976971	235978753	1782	True	2806.0	2806	95.123	931	2708	1	chr7D.!!$R1	1777
13	TraesCS2B01G446600	chr3B	454882029	454883357	1328	True	2196.0	2196	96.544	81	1405	1	chr3B.!!$R1	1324
14	TraesCS2B01G446600	chr4B	534271358	534272743	1385	True	2182.0	2182	95.176	81	1458	1	chr4B.!!$R1	1377
15	TraesCS2B01G446600	chr7A	116069	117300	1231	True	2015.0	2015	96.080	81	1325	1	chr7A.!!$R1	1244

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
47	48	0.528466	ATGATCCTGTGTGCGCGTAG	60.528	55.0	8.43	0.0	0.0	3.51	F
53	54	0.796312	CTGTGTGCGCGTAGGAAAAT	59.204	50.0	8.43	0.0	0.0	1.82	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1548	6964	1.735973	GGCATCTTCCGGGCATTTC	59.264	57.895	0.00	0.0	0.0	2.17	R
1920	7339	2.178521	CGCAGCTTCTCCGTACGT	59.821	61.111	15.21	0.0	0.0	3.57	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
18	19	3.043998	ACACTCTCCTCTCGTTGCT	57.956	52.632	0.00	0.00	0.00	3.91
19	20	2.201921	ACACTCTCCTCTCGTTGCTA	57.798	50.000	0.00	0.00	0.00	3.49
20	21	2.729194	ACACTCTCCTCTCGTTGCTAT	58.271	47.619	0.00	0.00	0.00	2.97
21	22	2.425312	ACACTCTCCTCTCGTTGCTATG	59.575	50.000	0.00	0.00	0.00	2.23
22	23	1.407258	ACTCTCCTCTCGTTGCTATGC	59.593	52.381	0.00	0.00	0.00	3.14
23	24	1.406898	CTCTCCTCTCGTTGCTATGCA	59.593	52.381	0.00	0.00	36.47	3.96
24	25	2.034878	TCTCCTCTCGTTGCTATGCAT	58.965	47.619	3.79	3.79	38.76	3.96
25	26	2.035193	TCTCCTCTCGTTGCTATGCATC	59.965	50.000	0.19	0.00	38.76	3.91
26	27	1.756538	TCCTCTCGTTGCTATGCATCA	59.243	47.619	0.19	0.00	38.76	3.07
27	28	1.863454	CCTCTCGTTGCTATGCATCAC	59.137	52.381	0.19	0.00	38.76	3.06
28	29	2.543641	CTCTCGTTGCTATGCATCACA	58.456	47.619	0.19	0.00	38.76	3.58
29	30	3.129109	CTCTCGTTGCTATGCATCACAT	58.871	45.455	0.19	0.00	43.18	3.21
30	31	2.867975	TCTCGTTGCTATGCATCACATG	59.132	45.455	0.19	0.00	40.06	3.21
31	32	2.867975	CTCGTTGCTATGCATCACATGA	59.132	45.455	0.19	3.61	40.06	3.07
32	33	3.469739	TCGTTGCTATGCATCACATGAT	58.530	40.909	0.19	0.00	40.06	2.45
33	34	3.495753	TCGTTGCTATGCATCACATGATC	59.504	43.478	0.19	0.00	40.06	2.92
34	35	3.364664	CGTTGCTATGCATCACATGATCC	60.365	47.826	0.19	0.00	40.06	3.36
35	36	3.782656	TGCTATGCATCACATGATCCT	57.217	42.857	0.19	0.00	40.06	3.24
36	37	3.408634	TGCTATGCATCACATGATCCTG	58.591	45.455	0.19	0.00	40.06	3.86
37	38	3.181448	TGCTATGCATCACATGATCCTGT	60.181	43.478	0.19	0.00	40.06	4.00
38	39	3.188667	GCTATGCATCACATGATCCTGTG	59.811	47.826	21.26	21.26	46.34	3.66
39	40	2.793288	TGCATCACATGATCCTGTGT	57.207	45.000	24.67	13.23	45.40	3.72
40	41	2.361789	TGCATCACATGATCCTGTGTG	58.638	47.619	24.67	21.71	45.40	3.82
41	42	1.065102	GCATCACATGATCCTGTGTGC	59.935	52.381	26.11	26.11	45.40	4.57
42	43	1.329599	CATCACATGATCCTGTGTGCG	59.670	52.381	24.67	13.83	45.40	5.34
43	44	1.020861	TCACATGATCCTGTGTGCGC	61.021	55.000	24.67	0.00	45.40	6.09
44	45	2.102438	ACATGATCCTGTGTGCGCG	61.102	57.895	0.00	0.00	0.00	6.86
45	46	2.102438	CATGATCCTGTGTGCGCGT	61.102	57.895	8.43	0.00	0.00	6.01
46	47	0.805711	CATGATCCTGTGTGCGCGTA	60.806	55.000	8.43	0.00	0.00	4.42
47	48	0.528466	ATGATCCTGTGTGCGCGTAG	60.528	55.000	8.43	0.00	0.00	3.51
48	49	1.878522	GATCCTGTGTGCGCGTAGG	60.879	63.158	8.43	12.11	0.00	3.18
49	50	2.279502	GATCCTGTGTGCGCGTAGGA	62.280	60.000	20.38	20.38	43.01	2.94
50	51	1.884075	ATCCTGTGTGCGCGTAGGAA	61.884	55.000	21.51	9.29	42.20	3.36
51	52	1.666553	CCTGTGTGCGCGTAGGAAA	60.667	57.895	8.43	0.00	31.91	3.13
52	53	1.225376	CCTGTGTGCGCGTAGGAAAA	61.225	55.000	8.43	0.00	31.91	2.29
53	54	0.796312	CTGTGTGCGCGTAGGAAAAT	59.204	50.000	8.43	0.00	0.00	1.82
54	55	1.196808	CTGTGTGCGCGTAGGAAAATT	59.803	47.619	8.43	0.00	0.00	1.82
55	56	1.604755	TGTGTGCGCGTAGGAAAATTT	59.395	42.857	8.43	0.00	0.00	1.82
56	57	2.033550	TGTGTGCGCGTAGGAAAATTTT	59.966	40.909	8.43	2.28	0.00	1.82
57	58	3.047093	GTGTGCGCGTAGGAAAATTTTT	58.953	40.909	8.43	0.00	0.00	1.94
58	59	3.046390	TGTGCGCGTAGGAAAATTTTTG	58.954	40.909	8.43	0.00	0.00	2.44
59	60	3.243101	TGTGCGCGTAGGAAAATTTTTGA	60.243	39.130	8.43	0.00	0.00	2.69
60	61	3.731717	GTGCGCGTAGGAAAATTTTTGAA	59.268	39.130	8.43	0.00	0.00	2.69
61	62	4.207429	GTGCGCGTAGGAAAATTTTTGAAA	59.793	37.500	8.43	0.00	0.00	2.69
62	63	4.985409	TGCGCGTAGGAAAATTTTTGAAAT	59.015	33.333	8.43	0.00	0.00	2.17
63	64	5.463724	TGCGCGTAGGAAAATTTTTGAAATT	59.536	32.000	8.43	0.00	0.00	1.82
64	65	6.641314	TGCGCGTAGGAAAATTTTTGAAATTA	59.359	30.769	8.43	0.00	0.00	1.40
65	66	6.946037	GCGCGTAGGAAAATTTTTGAAATTAC	59.054	34.615	8.43	2.27	0.00	1.89
66	67	7.148869	GCGCGTAGGAAAATTTTTGAAATTACT	60.149	33.333	8.43	0.00	0.00	2.24
67	68	9.332301	CGCGTAGGAAAATTTTTGAAATTACTA	57.668	29.630	4.63	0.00	0.00	1.82
76	77	9.819267	AAATTTTTGAAATTACTACGAAACCCA	57.181	25.926	0.00	0.00	0.00	4.51
77	78	9.819267	AATTTTTGAAATTACTACGAAACCCAA	57.181	25.926	0.00	0.00	0.00	4.12
78	79	8.631676	TTTTTGAAATTACTACGAAACCCAAC	57.368	30.769	0.00	0.00	0.00	3.77
79	80	6.939132	TTGAAATTACTACGAAACCCAACA	57.061	33.333	0.00	0.00	0.00	3.33
618	638	6.772605	TGCTATGATGCAACTAGTGGATATT	58.227	36.000	0.00	0.00	38.62	1.28
756	778	8.090831	GTGGATCTTATATGATGCAAGTAGTGA	58.909	37.037	19.86	0.00	44.20	3.41
988	6374	2.126071	CTTGCGGACGACATCGGT	60.126	61.111	6.21	0.00	44.95	4.69
989	6375	2.431771	TTGCGGACGACATCGGTG	60.432	61.111	6.21	0.00	44.95	4.94
1270	6658	1.940613	GTTTCGTCCTGCAGTTCAAGT	59.059	47.619	13.81	0.00	0.00	3.16
1417	6806	3.003113	GCACTACCGCTCGAGGGTT	62.003	63.158	25.69	16.26	38.99	4.11
1672	7088	4.202770	ACTCTGCCCTATGGATGTATCTCT	60.203	45.833	0.00	0.00	0.00	3.10
1706	7122	2.062177	GGGAAGCGGGGTACAGCTA	61.062	63.158	9.59	0.00	42.50	3.32
1734	7151	1.954258	GCCGGACTCGCCTACCTATAT	60.954	57.143	5.05	0.00	34.56	0.86
2097	7517	3.516300	TCTCACGCCTTTCCAGGTATAAA	59.484	43.478	0.00	0.00	43.18	1.40
2159	7579	7.823745	ACACTTTCACTTGATCCTAACATTT	57.176	32.000	0.00	0.00	0.00	2.32
2269	7689	2.203001	CGGTGCATCGTGCCCATA	60.203	61.111	12.24	0.00	44.23	2.74
2308	7728	0.750850	AGTACCACTTGACACAGCGT	59.249	50.000	0.00	0.00	0.00	5.07
2383	7809	0.108945	GTGGCTACGACCTACACCAC	60.109	60.000	0.00	0.00	40.64	4.16
2523	7949	2.418368	TCAATCACGGATTGGGAAGG	57.582	50.000	19.79	1.84	46.43	3.46

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
0	1	2.201921	TAGCAACGAGAGGAGAGTGT	57.798	50.000	0.00	0.00	0.00	3.55
1	2	2.797792	GCATAGCAACGAGAGGAGAGTG	60.798	54.545	0.00	0.00	0.00	3.51
2	3	1.407258	GCATAGCAACGAGAGGAGAGT	59.593	52.381	0.00	0.00	0.00	3.24
3	4	1.406898	TGCATAGCAACGAGAGGAGAG	59.593	52.381	0.00	0.00	34.76	3.20
4	5	1.474330	TGCATAGCAACGAGAGGAGA	58.526	50.000	0.00	0.00	34.76	3.71
5	6	2.223900	TGATGCATAGCAACGAGAGGAG	60.224	50.000	0.00	0.00	43.62	3.69
6	7	1.756538	TGATGCATAGCAACGAGAGGA	59.243	47.619	0.00	0.00	43.62	3.71
7	8	1.863454	GTGATGCATAGCAACGAGAGG	59.137	52.381	0.00	0.00	43.62	3.69
8	9	2.543641	TGTGATGCATAGCAACGAGAG	58.456	47.619	0.00	0.00	43.62	3.20
9	10	2.671130	TGTGATGCATAGCAACGAGA	57.329	45.000	0.00	0.00	43.62	4.04
10	11	2.867975	TCATGTGATGCATAGCAACGAG	59.132	45.455	0.00	0.00	43.62	4.18
11	12	2.903798	TCATGTGATGCATAGCAACGA	58.096	42.857	0.00	0.66	43.62	3.85
12	13	3.364664	GGATCATGTGATGCATAGCAACG	60.365	47.826	0.00	0.00	43.62	4.10
13	14	3.819337	AGGATCATGTGATGCATAGCAAC	59.181	43.478	15.41	0.00	44.10	4.17
14	15	3.818773	CAGGATCATGTGATGCATAGCAA	59.181	43.478	15.41	0.00	44.10	3.91
15	16	3.181448	ACAGGATCATGTGATGCATAGCA	60.181	43.478	13.05	1.62	44.10	3.49
16	17	3.409570	ACAGGATCATGTGATGCATAGC	58.590	45.455	13.05	0.00	44.10	2.97
26	27	2.102438	CGCGCACACAGGATCATGT	61.102	57.895	7.30	7.30	0.00	3.21
27	28	0.805711	TACGCGCACACAGGATCATG	60.806	55.000	5.73	5.68	0.00	3.07
28	29	0.528466	CTACGCGCACACAGGATCAT	60.528	55.000	5.73	0.00	0.00	2.45
29	30	1.153842	CTACGCGCACACAGGATCA	60.154	57.895	5.73	0.00	0.00	2.92
30	31	1.878522	CCTACGCGCACACAGGATC	60.879	63.158	5.73	0.00	0.00	3.36
31	32	1.884075	TTCCTACGCGCACACAGGAT	61.884	55.000	5.73	0.00	37.06	3.24
32	33	2.089887	TTTCCTACGCGCACACAGGA	62.090	55.000	5.73	10.21	35.38	3.86
33	34	1.225376	TTTTCCTACGCGCACACAGG	61.225	55.000	5.73	7.76	0.00	4.00
34	35	0.796312	ATTTTCCTACGCGCACACAG	59.204	50.000	5.73	0.00	0.00	3.66
35	36	1.231221	AATTTTCCTACGCGCACACA	58.769	45.000	5.73	0.00	0.00	3.72
36	37	2.325509	AAATTTTCCTACGCGCACAC	57.674	45.000	5.73	0.00	0.00	3.82
37	38	3.046390	CAAAAATTTTCCTACGCGCACA	58.954	40.909	5.73	0.00	0.00	4.57
38	39	3.301706	TCAAAAATTTTCCTACGCGCAC	58.698	40.909	5.73	0.00	0.00	5.34
39	40	3.627732	TCAAAAATTTTCCTACGCGCA	57.372	38.095	5.73	0.00	0.00	6.09
40	41	4.957832	TTTCAAAAATTTTCCTACGCGC	57.042	36.364	5.73	0.00	0.00	6.86
41	42	8.222984	AGTAATTTCAAAAATTTTCCTACGCG	57.777	30.769	3.53	3.53	0.00	6.01
50	51	9.819267	TGGGTTTCGTAGTAATTTCAAAAATTT	57.181	25.926	3.24	0.00	0.00	1.82
51	52	9.819267	TTGGGTTTCGTAGTAATTTCAAAAATT	57.181	25.926	3.43	3.43	0.00	1.82
52	53	9.251792	GTTGGGTTTCGTAGTAATTTCAAAAAT	57.748	29.630	0.00	0.00	0.00	1.82
53	54	8.248945	TGTTGGGTTTCGTAGTAATTTCAAAAA	58.751	29.630	0.00	0.00	0.00	1.94
54	55	7.701501	GTGTTGGGTTTCGTAGTAATTTCAAAA	59.298	33.333	0.00	0.00	0.00	2.44
55	56	7.194962	GTGTTGGGTTTCGTAGTAATTTCAAA	58.805	34.615	0.00	0.00	0.00	2.69
56	57	6.511444	CGTGTTGGGTTTCGTAGTAATTTCAA	60.511	38.462	0.00	0.00	0.00	2.69
57	58	5.050227	CGTGTTGGGTTTCGTAGTAATTTCA	60.050	40.000	0.00	0.00	0.00	2.69
58	59	5.376537	CGTGTTGGGTTTCGTAGTAATTTC	58.623	41.667	0.00	0.00	0.00	2.17
59	60	4.319694	GCGTGTTGGGTTTCGTAGTAATTT	60.320	41.667	0.00	0.00	0.00	1.82
60	61	3.187022	GCGTGTTGGGTTTCGTAGTAATT	59.813	43.478	0.00	0.00	0.00	1.40
61	62	2.738314	GCGTGTTGGGTTTCGTAGTAAT	59.262	45.455	0.00	0.00	0.00	1.89
62	63	2.134346	GCGTGTTGGGTTTCGTAGTAA	58.866	47.619	0.00	0.00	0.00	2.24
63	64	1.605202	GGCGTGTTGGGTTTCGTAGTA	60.605	52.381	0.00	0.00	0.00	1.82
64	65	0.881600	GGCGTGTTGGGTTTCGTAGT	60.882	55.000	0.00	0.00	0.00	2.73
65	66	1.864176	GGCGTGTTGGGTTTCGTAG	59.136	57.895	0.00	0.00	0.00	3.51
66	67	1.955157	CGGCGTGTTGGGTTTCGTA	60.955	57.895	0.00	0.00	0.00	3.43
67	68	3.273834	CGGCGTGTTGGGTTTCGT	61.274	61.111	0.00	0.00	0.00	3.85
68	69	4.020378	CCGGCGTGTTGGGTTTCG	62.020	66.667	6.01	0.00	0.00	3.46
69	70	2.900167	GACCGGCGTGTTGGGTTTC	61.900	63.158	6.01	0.00	33.28	2.78
70	71	2.903350	GACCGGCGTGTTGGGTTT	60.903	61.111	6.01	0.00	33.28	3.27
71	72	3.485346	ATGACCGGCGTGTTGGGTT	62.485	57.895	6.01	0.00	33.28	4.11
72	73	3.948719	ATGACCGGCGTGTTGGGT	61.949	61.111	6.01	0.00	36.58	4.51
73	74	3.430862	CATGACCGGCGTGTTGGG	61.431	66.667	6.01	0.00	0.00	4.12
74	75	3.430862	CCATGACCGGCGTGTTGG	61.431	66.667	6.01	5.57	0.00	3.77
75	76	4.101790	GCCATGACCGGCGTGTTG	62.102	66.667	6.01	0.00	43.52	3.33
618	638	4.142049	GGGTTCAACATTTGTTCTCCAACA	60.142	41.667	0.00	0.00	40.97	3.33
988	6374	2.552155	GGTCAAGCATGGTGTACTTCCA	60.552	50.000	11.51	11.51	39.41	3.53
989	6375	2.084546	GGTCAAGCATGGTGTACTTCC	58.915	52.381	0.00	0.00	0.00	3.46
1270	6658	4.789075	GAGCGTCGGCGGCTTACA	62.789	66.667	13.05	0.00	46.35	2.41
1548	6964	1.735973	GGCATCTTCCGGGCATTTC	59.264	57.895	0.00	0.00	0.00	2.17
1605	7021	2.253610	ACCTCCGTGAGAATGTACCAA	58.746	47.619	2.84	0.00	0.00	3.67
1686	7102	3.043999	GCTGTACCCCGCTTCCCAT	62.044	63.158	0.00	0.00	0.00	4.00
1692	7108	2.444140	CCCTAGCTGTACCCCGCT	60.444	66.667	0.00	6.64	40.15	5.52
1920	7339	2.178521	CGCAGCTTCTCCGTACGT	59.821	61.111	15.21	0.00	0.00	3.57
2097	7517	7.284489	TGGTAAGCTCAAGTGAAAATGTAGTTT	59.716	33.333	0.00	0.00	0.00	2.66
2159	7579	4.701171	CCGCCAAGTAACCTATAACCAAAA	59.299	41.667	0.00	0.00	0.00	2.44
2269	7689	3.009723	CTCCACGGCATAGACACAAATT	58.990	45.455	0.00	0.00	0.00	1.82
2308	7728	1.032794	TACCAAATTGTGCGGCAACA	58.967	45.000	3.23	2.42	40.28	3.33
2383	7809	0.603569	AGACGGCTTGTGGTACTCAG	59.396	55.000	0.00	0.00	31.85	3.35
2523	7949	1.442765	CACGTATTTCGCATGTTCGC	58.557	50.000	0.00	0.00	44.19	4.70

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.