Multiple sequence alignment - TraesCS2B01G446500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G446500 chr2B 100.000 6163 0 0 1 6163 639224202 639218040 0.000000e+00 11382.0
1 TraesCS2B01G446500 chr2B 91.038 212 16 3 249 459 138440785 138440994 3.640000e-72 283.0
2 TraesCS2B01G446500 chr2B 92.424 66 4 1 5536 5600 639218605 639218540 6.580000e-15 93.5
3 TraesCS2B01G446500 chr2B 92.424 66 4 1 5598 5663 639218667 639218603 6.580000e-15 93.5
4 TraesCS2B01G446500 chr2D 91.667 5700 306 64 571 6163 537221377 537215740 0.000000e+00 7738.0
5 TraesCS2B01G446500 chr2D 91.038 212 18 1 249 460 98985733 98985943 1.010000e-72 285.0
6 TraesCS2B01G446500 chr2A 92.611 2409 112 34 464 2841 679890087 679887714 0.000000e+00 3402.0
7 TraesCS2B01G446500 chr2A 89.488 2245 151 29 2959 5168 679887629 679885435 0.000000e+00 2760.0
8 TraesCS2B01G446500 chr2A 92.042 1043 62 11 5130 6163 679885426 679884396 0.000000e+00 1447.0
9 TraesCS2B01G446500 chr2A 91.228 57 4 1 5607 5663 679885019 679884964 6.620000e-10 76.8
10 TraesCS2B01G446500 chr6B 99.606 254 0 1 1 253 90260336 90260589 4.350000e-126 462.0
11 TraesCS2B01G446500 chr6A 100.000 250 0 0 1 250 129979733 129979484 4.350000e-126 462.0
12 TraesCS2B01G446500 chr6A 100.000 250 0 0 1 250 147995343 147995592 4.350000e-126 462.0
13 TraesCS2B01G446500 chr7B 99.605 253 0 1 1 252 296214029 296213777 1.570000e-125 460.0
14 TraesCS2B01G446500 chr7B 98.828 256 2 1 1 256 473636753 473636499 7.280000e-124 455.0
15 TraesCS2B01G446500 chr4B 99.213 254 1 1 1 254 577312940 577312688 2.020000e-124 457.0
16 TraesCS2B01G446500 chr4B 90.952 210 17 2 250 459 534272740 534272947 1.310000e-71 281.0
17 TraesCS2B01G446500 chr4A 97.710 262 6 0 1 262 46154844 46154583 9.420000e-123 451.0
18 TraesCS2B01G446500 chr4A 97.358 265 5 2 1 264 703316048 703316311 3.390000e-122 449.0
19 TraesCS2B01G446500 chr4A 90.455 220 18 2 249 467 447982477 447982260 2.810000e-73 287.0
20 TraesCS2B01G446500 chr1A 97.710 262 6 0 1 262 436477868 436478129 9.420000e-123 451.0
21 TraesCS2B01G446500 chr3B 94.118 221 10 3 249 468 454883353 454883571 3.560000e-87 333.0
22 TraesCS2B01G446500 chr7A 90.521 211 19 1 249 459 117296 117505 1.690000e-70 278.0
23 TraesCS2B01G446500 chrUn 89.623 212 19 3 249 460 377706043 377706251 3.660000e-67 267.0
24 TraesCS2B01G446500 chr4D 88.991 218 21 3 249 466 500541526 500541312 3.660000e-67 267.0
25 TraesCS2B01G446500 chr3D 89.100 211 22 1 249 459 300688143 300688352 1.700000e-65 261.0
26 TraesCS2B01G446500 chr1B 100.000 30 0 0 4687 4716 49635987 49636016 8.630000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G446500 chr2B 639218040 639224202 6162 True 11382.00 11382 100.00000 1 6163 1 chr2B.!!$R1 6162
1 TraesCS2B01G446500 chr2D 537215740 537221377 5637 True 7738.00 7738 91.66700 571 6163 1 chr2D.!!$R1 5592
2 TraesCS2B01G446500 chr2A 679884396 679890087 5691 True 1921.45 3402 91.34225 464 6163 4 chr2A.!!$R1 5699

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
328 329 0.033504 AATATCCTACCGCCGCAGTG 59.966 55.000 0.00 0.00 0.00 3.66 F
348 349 0.259647 TCCAGCGGTAGCCTAGGTAA 59.740 55.000 11.31 0.00 46.67 2.85 F
388 389 0.955905 GCGGTAGCAAAAAGGGTCAA 59.044 50.000 0.00 0.00 44.35 3.18 F
911 927 1.211818 CGTGAATCCTAGCTGCTCGC 61.212 60.000 4.91 0.00 39.57 5.03 F
2232 2299 1.671379 GTGAACCTCGGAACCTGGC 60.671 63.158 0.00 0.00 0.00 4.85 F
2356 2423 1.338973 GGTCACGTTCCTGTCTGTACA 59.661 52.381 0.00 0.00 0.00 2.90 F
3135 3242 0.037590 TGGAAAACTATGCGGCACCT 59.962 50.000 4.03 0.00 0.00 4.00 F
3259 3366 0.390492 TCAGACATCTAGGCCATGCG 59.610 55.000 5.01 0.00 0.00 4.73 F
3836 3944 0.590195 GTGTTGGTGAAGCTCAGCTG 59.410 55.000 7.63 7.63 44.58 4.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2147 2212 0.102481 AGTCACGGTCACACTCACAC 59.898 55.000 0.00 0.00 0.00 3.82 R
2232 2299 0.511221 GTTCACATGTTCGTCGGTGG 59.489 55.000 0.00 0.00 32.29 4.61 R
2309 2376 0.742990 GCGGTCGTTTGATCCATGGA 60.743 55.000 18.88 18.88 0.00 3.41 R
2335 2402 1.338973 GTACAGACAGGAACGTGACCA 59.661 52.381 13.28 0.00 0.00 4.02 R
3038 3145 0.108138 GATGGACGAGTCTGGGTTGG 60.108 60.000 3.09 0.00 0.00 3.77 R
3428 3535 0.321564 TTGACATCCTTGGTGCCGAG 60.322 55.000 0.00 0.00 0.00 4.63 R
4430 4560 0.321919 AGCAGAGCAGCCATTTTCGA 60.322 50.000 0.00 0.00 34.23 3.71 R
4435 4565 0.607489 ACGAAAGCAGAGCAGCCATT 60.607 50.000 0.00 0.00 34.23 3.16 R
5308 5507 0.036010 ATGGTCAGGAAACGAGCCAG 60.036 55.000 0.00 0.00 32.84 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 6.739112 TCATTCTACTAATGATGTGACCTCG 58.261 40.000 0.00 0.00 32.21 4.63
25 26 6.321435 TCATTCTACTAATGATGTGACCTCGT 59.679 38.462 0.00 0.00 32.21 4.18
26 27 6.525578 TTCTACTAATGATGTGACCTCGTT 57.474 37.500 1.18 1.18 0.00 3.85
27 28 7.634671 TTCTACTAATGATGTGACCTCGTTA 57.365 36.000 3.19 3.19 0.00 3.18
28 29 7.634671 TCTACTAATGATGTGACCTCGTTAA 57.365 36.000 4.52 0.00 0.00 2.01
29 30 8.234136 TCTACTAATGATGTGACCTCGTTAAT 57.766 34.615 4.52 0.00 0.00 1.40
30 31 8.350722 TCTACTAATGATGTGACCTCGTTAATC 58.649 37.037 4.52 0.00 0.00 1.75
31 32 6.873997 ACTAATGATGTGACCTCGTTAATCA 58.126 36.000 4.52 0.00 0.00 2.57
32 33 7.327975 ACTAATGATGTGACCTCGTTAATCAA 58.672 34.615 4.52 0.00 0.00 2.57
33 34 7.822334 ACTAATGATGTGACCTCGTTAATCAAA 59.178 33.333 4.52 0.00 0.00 2.69
34 35 7.630242 AATGATGTGACCTCGTTAATCAAAT 57.370 32.000 0.00 0.00 0.00 2.32
35 36 8.731275 AATGATGTGACCTCGTTAATCAAATA 57.269 30.769 0.00 0.00 0.00 1.40
36 37 8.731275 ATGATGTGACCTCGTTAATCAAATAA 57.269 30.769 0.00 0.00 0.00 1.40
37 38 7.970384 TGATGTGACCTCGTTAATCAAATAAC 58.030 34.615 0.00 0.00 33.40 1.89
38 39 7.604545 TGATGTGACCTCGTTAATCAAATAACA 59.395 33.333 0.00 0.00 35.89 2.41
39 40 7.731882 TGTGACCTCGTTAATCAAATAACAA 57.268 32.000 0.00 0.00 35.89 2.83
40 41 7.577979 TGTGACCTCGTTAATCAAATAACAAC 58.422 34.615 0.00 0.00 35.89 3.32
41 42 7.442969 TGTGACCTCGTTAATCAAATAACAACT 59.557 33.333 0.00 0.00 35.89 3.16
42 43 7.955864 GTGACCTCGTTAATCAAATAACAACTC 59.044 37.037 0.00 0.00 35.89 3.01
43 44 7.658167 TGACCTCGTTAATCAAATAACAACTCA 59.342 33.333 0.00 0.00 35.89 3.41
44 45 8.561738 ACCTCGTTAATCAAATAACAACTCAT 57.438 30.769 0.00 0.00 35.89 2.90
45 46 9.010029 ACCTCGTTAATCAAATAACAACTCATT 57.990 29.630 0.00 0.00 35.89 2.57
46 47 9.277565 CCTCGTTAATCAAATAACAACTCATTG 57.722 33.333 0.00 0.00 41.98 2.82
60 61 6.573664 CAACTCATTGTTCATGGTTAGGAA 57.426 37.500 0.00 0.00 36.63 3.36
61 62 6.980593 CAACTCATTGTTCATGGTTAGGAAA 58.019 36.000 0.00 0.00 36.63 3.13
62 63 6.575162 ACTCATTGTTCATGGTTAGGAAAC 57.425 37.500 0.00 0.00 33.07 2.78
63 64 6.306987 ACTCATTGTTCATGGTTAGGAAACT 58.693 36.000 0.00 0.00 37.77 2.66
64 65 6.777580 ACTCATTGTTCATGGTTAGGAAACTT 59.222 34.615 0.00 0.00 36.18 2.66
65 66 7.942341 ACTCATTGTTCATGGTTAGGAAACTTA 59.058 33.333 0.00 0.00 36.18 2.24
66 67 8.698973 TCATTGTTCATGGTTAGGAAACTTAA 57.301 30.769 0.00 0.00 36.18 1.85
67 68 8.573035 TCATTGTTCATGGTTAGGAAACTTAAC 58.427 33.333 0.00 0.00 36.18 2.01
68 69 6.887626 TGTTCATGGTTAGGAAACTTAACC 57.112 37.500 13.40 13.40 43.67 2.85
75 76 7.519032 TGGTTAGGAAACTTAACCATCTTTG 57.481 36.000 17.28 0.00 43.20 2.77
76 77 7.291566 TGGTTAGGAAACTTAACCATCTTTGA 58.708 34.615 17.28 0.00 43.20 2.69
77 78 7.947890 TGGTTAGGAAACTTAACCATCTTTGAT 59.052 33.333 17.28 0.00 43.20 2.57
78 79 8.803235 GGTTAGGAAACTTAACCATCTTTGATT 58.197 33.333 14.78 0.00 43.67 2.57
82 83 8.512138 AGGAAACTTAACCATCTTTGATTAACG 58.488 33.333 0.00 0.00 37.44 3.18
83 84 8.508875 GGAAACTTAACCATCTTTGATTAACGA 58.491 33.333 0.00 0.00 0.00 3.85
84 85 9.543018 GAAACTTAACCATCTTTGATTAACGAG 57.457 33.333 0.00 0.00 0.00 4.18
85 86 7.073342 ACTTAACCATCTTTGATTAACGAGC 57.927 36.000 0.00 0.00 0.00 5.03
86 87 6.879458 ACTTAACCATCTTTGATTAACGAGCT 59.121 34.615 0.00 0.00 0.00 4.09
87 88 8.038944 ACTTAACCATCTTTGATTAACGAGCTA 58.961 33.333 0.00 0.00 0.00 3.32
88 89 6.910536 AACCATCTTTGATTAACGAGCTAG 57.089 37.500 0.00 0.00 0.00 3.42
89 90 5.978814 ACCATCTTTGATTAACGAGCTAGT 58.021 37.500 0.00 0.00 0.00 2.57
90 91 6.043411 ACCATCTTTGATTAACGAGCTAGTC 58.957 40.000 0.00 0.00 0.00 2.59
91 92 6.042777 CCATCTTTGATTAACGAGCTAGTCA 58.957 40.000 0.00 0.00 0.00 3.41
92 93 6.535150 CCATCTTTGATTAACGAGCTAGTCAA 59.465 38.462 0.00 0.00 0.00 3.18
93 94 7.254252 CCATCTTTGATTAACGAGCTAGTCAAG 60.254 40.741 0.00 0.00 31.56 3.02
94 95 6.688578 TCTTTGATTAACGAGCTAGTCAAGT 58.311 36.000 0.00 0.00 31.56 3.16
95 96 7.823665 TCTTTGATTAACGAGCTAGTCAAGTA 58.176 34.615 0.00 0.00 31.56 2.24
96 97 7.968956 TCTTTGATTAACGAGCTAGTCAAGTAG 59.031 37.037 0.00 0.00 31.56 2.57
97 98 6.997239 TGATTAACGAGCTAGTCAAGTAGA 57.003 37.500 0.00 0.00 0.00 2.59
98 99 7.017498 TGATTAACGAGCTAGTCAAGTAGAG 57.983 40.000 0.00 0.00 0.00 2.43
99 100 5.814764 TTAACGAGCTAGTCAAGTAGAGG 57.185 43.478 0.00 0.00 0.00 3.69
100 101 2.018515 ACGAGCTAGTCAAGTAGAGGC 58.981 52.381 0.00 0.00 0.00 4.70
101 102 2.017782 CGAGCTAGTCAAGTAGAGGCA 58.982 52.381 0.00 0.00 0.00 4.75
102 103 2.621055 CGAGCTAGTCAAGTAGAGGCAT 59.379 50.000 0.00 0.00 0.00 4.40
103 104 3.815962 CGAGCTAGTCAAGTAGAGGCATA 59.184 47.826 0.00 0.00 0.00 3.14
104 105 4.319911 CGAGCTAGTCAAGTAGAGGCATAC 60.320 50.000 0.00 0.00 0.00 2.39
105 106 4.798882 AGCTAGTCAAGTAGAGGCATACT 58.201 43.478 0.00 0.00 37.61 2.12
106 107 5.942961 AGCTAGTCAAGTAGAGGCATACTA 58.057 41.667 3.23 0.00 34.90 1.82
107 108 6.001460 AGCTAGTCAAGTAGAGGCATACTAG 58.999 44.000 0.00 0.00 38.50 2.57
108 109 5.766174 GCTAGTCAAGTAGAGGCATACTAGT 59.234 44.000 0.00 0.00 38.02 2.57
109 110 6.293735 GCTAGTCAAGTAGAGGCATACTAGTG 60.294 46.154 5.39 0.00 38.02 2.74
110 111 5.756918 AGTCAAGTAGAGGCATACTAGTGA 58.243 41.667 5.39 2.59 34.90 3.41
111 112 5.591067 AGTCAAGTAGAGGCATACTAGTGAC 59.409 44.000 17.97 17.97 40.57 3.67
112 113 5.357314 GTCAAGTAGAGGCATACTAGTGACA 59.643 44.000 19.41 0.00 40.28 3.58
113 114 5.357314 TCAAGTAGAGGCATACTAGTGACAC 59.643 44.000 5.39 0.00 34.90 3.67
114 115 5.118729 AGTAGAGGCATACTAGTGACACT 57.881 43.478 13.68 13.68 34.21 3.55
115 116 5.127491 AGTAGAGGCATACTAGTGACACTC 58.873 45.833 12.39 8.31 34.21 3.51
116 117 4.243793 AGAGGCATACTAGTGACACTCT 57.756 45.455 12.39 10.40 0.00 3.24
117 118 3.951037 AGAGGCATACTAGTGACACTCTG 59.049 47.826 12.39 9.04 33.23 3.35
118 119 3.697045 GAGGCATACTAGTGACACTCTGT 59.303 47.826 12.39 14.35 0.00 3.41
119 120 4.090090 AGGCATACTAGTGACACTCTGTT 58.910 43.478 12.39 0.00 0.00 3.16
120 121 4.528596 AGGCATACTAGTGACACTCTGTTT 59.471 41.667 12.39 5.23 0.00 2.83
121 122 4.627467 GGCATACTAGTGACACTCTGTTTG 59.373 45.833 12.39 16.63 0.00 2.93
122 123 5.230942 GCATACTAGTGACACTCTGTTTGT 58.769 41.667 12.39 5.61 0.00 2.83
123 124 5.346281 GCATACTAGTGACACTCTGTTTGTC 59.654 44.000 12.39 9.81 43.22 3.18
124 125 6.682746 CATACTAGTGACACTCTGTTTGTCT 58.317 40.000 12.39 0.00 43.30 3.41
125 126 7.575155 GCATACTAGTGACACTCTGTTTGTCTA 60.575 40.741 12.39 0.00 43.30 2.59
126 127 6.902771 ACTAGTGACACTCTGTTTGTCTAT 57.097 37.500 12.39 0.00 43.30 1.98
127 128 6.682746 ACTAGTGACACTCTGTTTGTCTATG 58.317 40.000 12.39 0.00 43.30 2.23
128 129 5.537300 AGTGACACTCTGTTTGTCTATGT 57.463 39.130 1.07 0.00 43.30 2.29
129 130 6.650427 AGTGACACTCTGTTTGTCTATGTA 57.350 37.500 1.07 0.00 43.30 2.29
130 131 7.233389 AGTGACACTCTGTTTGTCTATGTAT 57.767 36.000 1.07 0.00 43.30 2.29
131 132 7.671302 AGTGACACTCTGTTTGTCTATGTATT 58.329 34.615 1.07 0.00 43.30 1.89
132 133 7.815068 AGTGACACTCTGTTTGTCTATGTATTC 59.185 37.037 1.07 0.00 43.30 1.75
133 134 7.598869 GTGACACTCTGTTTGTCTATGTATTCA 59.401 37.037 0.00 0.00 43.30 2.57
134 135 7.598869 TGACACTCTGTTTGTCTATGTATTCAC 59.401 37.037 11.01 0.00 43.30 3.18
135 136 7.441836 ACACTCTGTTTGTCTATGTATTCACA 58.558 34.615 0.00 0.00 39.52 3.58
136 137 7.385205 ACACTCTGTTTGTCTATGTATTCACAC 59.615 37.037 0.00 0.00 37.54 3.82
137 138 7.384932 CACTCTGTTTGTCTATGTATTCACACA 59.615 37.037 0.00 0.00 37.54 3.72
138 139 8.097038 ACTCTGTTTGTCTATGTATTCACACAT 58.903 33.333 0.00 0.00 41.88 3.21
139 140 8.255394 TCTGTTTGTCTATGTATTCACACATG 57.745 34.615 0.00 0.00 39.46 3.21
140 141 7.877612 TCTGTTTGTCTATGTATTCACACATGT 59.122 33.333 0.00 0.00 39.46 3.21
141 142 9.150348 CTGTTTGTCTATGTATTCACACATGTA 57.850 33.333 0.00 0.00 39.46 2.29
142 143 9.665719 TGTTTGTCTATGTATTCACACATGTAT 57.334 29.630 0.00 0.00 39.46 2.29
152 153 8.608317 TGTATTCACACATGTATTATGTTTCCG 58.392 33.333 0.00 0.00 0.00 4.30
153 154 6.429791 TTCACACATGTATTATGTTTCCGG 57.570 37.500 0.00 0.00 0.00 5.14
154 155 5.492895 TCACACATGTATTATGTTTCCGGT 58.507 37.500 0.00 0.00 0.00 5.28
155 156 6.641474 TCACACATGTATTATGTTTCCGGTA 58.359 36.000 0.00 0.00 0.00 4.02
156 157 7.104290 TCACACATGTATTATGTTTCCGGTAA 58.896 34.615 0.00 0.00 0.00 2.85
157 158 7.606839 TCACACATGTATTATGTTTCCGGTAAA 59.393 33.333 0.00 0.00 0.00 2.01
158 159 8.402472 CACACATGTATTATGTTTCCGGTAAAT 58.598 33.333 0.00 0.00 0.00 1.40
159 160 9.616156 ACACATGTATTATGTTTCCGGTAAATA 57.384 29.630 0.00 0.00 0.00 1.40
160 161 9.872757 CACATGTATTATGTTTCCGGTAAATAC 57.127 33.333 0.00 3.99 32.83 1.89
161 162 9.616156 ACATGTATTATGTTTCCGGTAAATACA 57.384 29.630 14.59 14.59 41.43 2.29
169 170 7.311364 TGTTTCCGGTAAATACAATTCTAGC 57.689 36.000 0.00 0.00 0.00 3.42
170 171 6.879993 TGTTTCCGGTAAATACAATTCTAGCA 59.120 34.615 0.00 0.00 0.00 3.49
171 172 7.554835 TGTTTCCGGTAAATACAATTCTAGCAT 59.445 33.333 0.00 0.00 0.00 3.79
172 173 7.490962 TTCCGGTAAATACAATTCTAGCATG 57.509 36.000 0.00 0.00 0.00 4.06
173 174 6.822442 TCCGGTAAATACAATTCTAGCATGA 58.178 36.000 0.00 0.00 0.00 3.07
174 175 7.276658 TCCGGTAAATACAATTCTAGCATGAA 58.723 34.615 0.00 0.00 0.00 2.57
175 176 7.936847 TCCGGTAAATACAATTCTAGCATGAAT 59.063 33.333 0.00 0.00 38.19 2.57
176 177 9.214957 CCGGTAAATACAATTCTAGCATGAATA 57.785 33.333 0.00 0.00 35.82 1.75
235 236 8.637196 AATAACTTTATTATTGCCTCTAGGGC 57.363 34.615 13.60 13.60 44.71 5.19
247 248 4.982241 CCTCTAGGGCATATTTCCTTCA 57.018 45.455 0.00 0.00 34.75 3.02
248 249 4.646572 CCTCTAGGGCATATTTCCTTCAC 58.353 47.826 0.00 0.00 34.75 3.18
249 250 4.310769 CTCTAGGGCATATTTCCTTCACG 58.689 47.826 0.00 0.00 34.75 4.35
250 251 2.348411 AGGGCATATTTCCTTCACGG 57.652 50.000 0.00 0.00 0.00 4.94
251 252 0.668535 GGGCATATTTCCTTCACGGC 59.331 55.000 0.00 0.00 0.00 5.68
252 253 0.307760 GGCATATTTCCTTCACGGCG 59.692 55.000 4.80 4.80 0.00 6.46
253 254 0.307760 GCATATTTCCTTCACGGCGG 59.692 55.000 13.24 0.00 0.00 6.13
254 255 1.663695 CATATTTCCTTCACGGCGGT 58.336 50.000 13.24 0.00 0.00 5.68
255 256 1.330521 CATATTTCCTTCACGGCGGTG 59.669 52.381 17.69 17.69 45.78 4.94
256 257 0.391927 TATTTCCTTCACGGCGGTGG 60.392 55.000 22.51 8.58 44.50 4.61
257 258 2.406002 ATTTCCTTCACGGCGGTGGT 62.406 55.000 22.51 0.00 44.50 4.16
258 259 1.756408 TTTCCTTCACGGCGGTGGTA 61.756 55.000 22.51 11.26 44.50 3.25
259 260 2.125673 CCTTCACGGCGGTGGTAG 60.126 66.667 22.51 18.52 44.50 3.18
260 261 2.125673 CTTCACGGCGGTGGTAGG 60.126 66.667 22.51 2.99 44.50 3.18
261 262 3.659089 CTTCACGGCGGTGGTAGGG 62.659 68.421 22.51 6.59 44.50 3.53
263 264 4.752879 CACGGCGGTGGTAGGGTG 62.753 72.222 16.16 0.00 40.58 4.61
267 268 4.091939 GCGGTGGTAGGGTGGGAC 62.092 72.222 0.00 0.00 0.00 4.46
268 269 3.766691 CGGTGGTAGGGTGGGACG 61.767 72.222 0.00 0.00 0.00 4.79
269 270 3.396570 GGTGGTAGGGTGGGACGG 61.397 72.222 0.00 0.00 0.00 4.79
270 271 2.284112 GTGGTAGGGTGGGACGGA 60.284 66.667 0.00 0.00 0.00 4.69
271 272 1.688187 GTGGTAGGGTGGGACGGAT 60.688 63.158 0.00 0.00 0.00 4.18
272 273 1.687840 TGGTAGGGTGGGACGGATG 60.688 63.158 0.00 0.00 0.00 3.51
273 274 2.440817 GGTAGGGTGGGACGGATGG 61.441 68.421 0.00 0.00 0.00 3.51
274 275 2.041301 TAGGGTGGGACGGATGGG 60.041 66.667 0.00 0.00 0.00 4.00
275 276 3.707025 TAGGGTGGGACGGATGGGG 62.707 68.421 0.00 0.00 0.00 4.96
296 297 2.776072 CGAAGGCCGTTAACGCTG 59.224 61.111 22.43 10.97 38.18 5.18
297 298 2.479198 GAAGGCCGTTAACGCTGC 59.521 61.111 22.43 19.70 38.18 5.25
298 299 2.032071 AAGGCCGTTAACGCTGCT 59.968 55.556 22.43 8.52 38.18 4.24
299 300 2.240612 GAAGGCCGTTAACGCTGCTG 62.241 60.000 22.43 9.50 38.18 4.41
300 301 2.725203 AAGGCCGTTAACGCTGCTGA 62.725 55.000 22.43 0.00 38.18 4.26
301 302 2.474712 GCCGTTAACGCTGCTGAC 59.525 61.111 22.43 1.72 38.18 3.51
302 303 2.769617 CCGTTAACGCTGCTGACG 59.230 61.111 22.43 2.38 38.18 4.35
304 305 1.127817 CGTTAACGCTGCTGACGTG 59.872 57.895 16.05 0.00 44.30 4.49
305 306 1.491563 GTTAACGCTGCTGACGTGG 59.508 57.895 12.16 0.00 44.30 4.94
306 307 0.942410 GTTAACGCTGCTGACGTGGA 60.942 55.000 12.16 3.67 44.30 4.02
307 308 0.037697 TTAACGCTGCTGACGTGGAT 60.038 50.000 12.16 2.56 44.30 3.41
308 309 0.812549 TAACGCTGCTGACGTGGATA 59.187 50.000 12.16 1.80 44.30 2.59
309 310 0.037697 AACGCTGCTGACGTGGATAA 60.038 50.000 12.16 0.00 44.30 1.75
310 311 0.037697 ACGCTGCTGACGTGGATAAA 60.038 50.000 11.02 0.00 43.23 1.40
311 312 1.290203 CGCTGCTGACGTGGATAAAT 58.710 50.000 0.00 0.00 0.00 1.40
312 313 2.159156 ACGCTGCTGACGTGGATAAATA 60.159 45.455 11.02 0.00 43.23 1.40
313 314 3.059884 CGCTGCTGACGTGGATAAATAT 58.940 45.455 0.00 0.00 0.00 1.28
314 315 3.121944 CGCTGCTGACGTGGATAAATATC 59.878 47.826 0.00 0.00 0.00 1.63
324 325 2.547826 GGATAAATATCCTACCGCCGC 58.452 52.381 11.46 0.00 46.92 6.53
325 326 2.093869 GGATAAATATCCTACCGCCGCA 60.094 50.000 11.46 0.00 46.92 5.69
326 327 2.736144 TAAATATCCTACCGCCGCAG 57.264 50.000 0.00 0.00 0.00 5.18
327 328 0.756903 AAATATCCTACCGCCGCAGT 59.243 50.000 0.00 0.00 0.00 4.40
328 329 0.033504 AATATCCTACCGCCGCAGTG 59.966 55.000 0.00 0.00 0.00 3.66
329 330 1.113517 ATATCCTACCGCCGCAGTGT 61.114 55.000 0.00 0.00 0.00 3.55
330 331 1.731433 TATCCTACCGCCGCAGTGTC 61.731 60.000 0.00 0.00 0.00 3.67
331 332 4.814294 CCTACCGCCGCAGTGTCC 62.814 72.222 0.00 0.00 0.00 4.02
332 333 4.063967 CTACCGCCGCAGTGTCCA 62.064 66.667 0.00 0.00 0.00 4.02
333 334 3.989698 CTACCGCCGCAGTGTCCAG 62.990 68.421 0.00 0.00 0.00 3.86
340 341 2.815647 GCAGTGTCCAGCGGTAGC 60.816 66.667 0.00 0.00 45.58 3.58
341 342 2.125512 CAGTGTCCAGCGGTAGCC 60.126 66.667 0.00 0.00 46.67 3.93
342 343 2.283966 AGTGTCCAGCGGTAGCCT 60.284 61.111 0.00 0.00 46.67 4.58
343 344 1.000019 AGTGTCCAGCGGTAGCCTA 60.000 57.895 0.00 0.00 46.67 3.93
344 345 1.038130 AGTGTCCAGCGGTAGCCTAG 61.038 60.000 0.00 0.00 46.67 3.02
345 346 1.756950 TGTCCAGCGGTAGCCTAGG 60.757 63.158 3.67 3.67 46.67 3.02
346 347 1.757340 GTCCAGCGGTAGCCTAGGT 60.757 63.158 11.31 0.00 46.67 3.08
347 348 0.466922 GTCCAGCGGTAGCCTAGGTA 60.467 60.000 11.31 0.00 46.67 3.08
348 349 0.259647 TCCAGCGGTAGCCTAGGTAA 59.740 55.000 11.31 0.00 46.67 2.85
349 350 1.133262 TCCAGCGGTAGCCTAGGTAAT 60.133 52.381 11.31 0.00 46.67 1.89
350 351 1.272769 CCAGCGGTAGCCTAGGTAATC 59.727 57.143 11.31 0.00 46.67 1.75
351 352 1.272769 CAGCGGTAGCCTAGGTAATCC 59.727 57.143 11.31 7.41 46.67 3.01
352 353 1.147399 AGCGGTAGCCTAGGTAATCCT 59.853 52.381 11.31 0.49 46.67 3.24
353 354 2.377869 AGCGGTAGCCTAGGTAATCCTA 59.622 50.000 11.31 0.00 46.67 2.94
354 355 2.491298 GCGGTAGCCTAGGTAATCCTAC 59.509 54.545 11.31 12.14 40.33 3.18
355 356 4.682119 GCGGTAGCCTAGGTAATCCTACC 61.682 56.522 23.14 23.14 42.80 3.18
361 362 2.739132 GGTAATCCTACCGCCGGG 59.261 66.667 8.57 0.00 38.43 5.73
362 363 2.030113 GTAATCCTACCGCCGGGC 59.970 66.667 8.57 9.54 36.48 6.13
363 364 3.236233 TAATCCTACCGCCGGGCC 61.236 66.667 14.55 0.00 36.48 5.80
364 365 3.761690 TAATCCTACCGCCGGGCCT 62.762 63.158 14.55 0.72 36.48 5.19
387 388 2.636299 GCGGTAGCAAAAAGGGTCA 58.364 52.632 0.00 0.00 44.35 4.02
388 389 0.955905 GCGGTAGCAAAAAGGGTCAA 59.044 50.000 0.00 0.00 44.35 3.18
389 390 1.338655 GCGGTAGCAAAAAGGGTCAAA 59.661 47.619 0.00 0.00 44.35 2.69
390 391 2.029380 GCGGTAGCAAAAAGGGTCAAAT 60.029 45.455 0.00 0.00 44.35 2.32
391 392 3.574614 CGGTAGCAAAAAGGGTCAAATG 58.425 45.455 0.00 0.00 0.00 2.32
392 393 3.005367 CGGTAGCAAAAAGGGTCAAATGT 59.995 43.478 0.00 0.00 0.00 2.71
393 394 4.556233 GGTAGCAAAAAGGGTCAAATGTC 58.444 43.478 0.00 0.00 0.00 3.06
394 395 4.038642 GGTAGCAAAAAGGGTCAAATGTCA 59.961 41.667 0.00 0.00 0.00 3.58
395 396 4.751767 AGCAAAAAGGGTCAAATGTCAA 57.248 36.364 0.00 0.00 0.00 3.18
396 397 5.096443 AGCAAAAAGGGTCAAATGTCAAA 57.904 34.783 0.00 0.00 0.00 2.69
397 398 5.495640 AGCAAAAAGGGTCAAATGTCAAAA 58.504 33.333 0.00 0.00 0.00 2.44
398 399 5.942826 AGCAAAAAGGGTCAAATGTCAAAAA 59.057 32.000 0.00 0.00 0.00 1.94
421 422 7.379059 AAAAATTCAAAGAGGGGTCAAATCT 57.621 32.000 0.00 0.00 0.00 2.40
422 423 6.596309 AAATTCAAAGAGGGGTCAAATCTC 57.404 37.500 0.00 0.00 0.00 2.75
423 424 3.334583 TCAAAGAGGGGTCAAATCTCG 57.665 47.619 0.00 0.00 33.16 4.04
424 425 2.903784 TCAAAGAGGGGTCAAATCTCGA 59.096 45.455 0.00 0.00 33.16 4.04
425 426 3.519510 TCAAAGAGGGGTCAAATCTCGAT 59.480 43.478 0.00 0.00 33.16 3.59
426 427 4.019321 TCAAAGAGGGGTCAAATCTCGATT 60.019 41.667 0.00 0.00 33.16 3.34
427 428 4.576330 AAGAGGGGTCAAATCTCGATTT 57.424 40.909 0.00 0.00 41.33 2.17
428 429 4.576330 AGAGGGGTCAAATCTCGATTTT 57.424 40.909 2.28 0.00 38.84 1.82
429 430 4.265073 AGAGGGGTCAAATCTCGATTTTG 58.735 43.478 12.44 12.44 38.84 2.44
430 431 4.010349 GAGGGGTCAAATCTCGATTTTGT 58.990 43.478 16.19 2.41 38.84 2.83
431 432 4.407365 AGGGGTCAAATCTCGATTTTGTT 58.593 39.130 16.19 0.00 38.84 2.83
432 433 4.832823 AGGGGTCAAATCTCGATTTTGTTT 59.167 37.500 16.19 0.00 38.84 2.83
433 434 4.923281 GGGGTCAAATCTCGATTTTGTTTG 59.077 41.667 16.19 9.81 38.84 2.93
434 435 5.278758 GGGGTCAAATCTCGATTTTGTTTGA 60.279 40.000 16.19 11.42 38.84 2.69
436 437 6.349347 GTCAAATCTCGATTTTGTTTGACG 57.651 37.500 17.39 0.00 44.63 4.35
437 438 6.133392 GTCAAATCTCGATTTTGTTTGACGA 58.867 36.000 17.39 0.00 44.63 4.20
438 439 6.631238 GTCAAATCTCGATTTTGTTTGACGAA 59.369 34.615 17.39 0.98 44.63 3.85
439 440 7.165154 GTCAAATCTCGATTTTGTTTGACGAAA 59.835 33.333 17.39 0.00 44.63 3.46
440 441 7.375808 TCAAATCTCGATTTTGTTTGACGAAAG 59.624 33.333 16.19 0.00 38.84 2.62
441 442 5.090652 TCTCGATTTTGTTTGACGAAAGG 57.909 39.130 0.00 0.00 35.17 3.11
442 443 4.024387 TCTCGATTTTGTTTGACGAAAGGG 60.024 41.667 0.00 0.00 35.17 3.95
443 444 3.628487 TCGATTTTGTTTGACGAAAGGGT 59.372 39.130 0.00 0.00 35.17 4.34
444 445 3.972502 CGATTTTGTTTGACGAAAGGGTC 59.027 43.478 0.00 0.00 35.17 4.46
445 446 4.496673 CGATTTTGTTTGACGAAAGGGTCA 60.497 41.667 0.00 0.00 44.74 4.02
452 453 1.666700 TGACGAAAGGGTCAAAACACG 59.333 47.619 0.00 0.00 43.55 4.49
453 454 1.935199 GACGAAAGGGTCAAAACACGA 59.065 47.619 0.00 0.00 36.91 4.35
454 455 2.352342 GACGAAAGGGTCAAAACACGAA 59.648 45.455 0.00 0.00 36.91 3.85
455 456 2.748532 ACGAAAGGGTCAAAACACGAAA 59.251 40.909 0.00 0.00 32.44 3.46
456 457 3.379057 ACGAAAGGGTCAAAACACGAAAT 59.621 39.130 0.00 0.00 32.44 2.17
457 458 4.142337 ACGAAAGGGTCAAAACACGAAATT 60.142 37.500 0.00 0.00 32.44 1.82
458 459 4.801516 CGAAAGGGTCAAAACACGAAATTT 59.198 37.500 0.00 0.00 32.44 1.82
459 460 5.289917 CGAAAGGGTCAAAACACGAAATTTT 59.710 36.000 0.00 0.00 32.44 1.82
460 461 6.472808 CGAAAGGGTCAAAACACGAAATTTTA 59.527 34.615 0.00 0.00 32.44 1.52
461 462 7.513969 CGAAAGGGTCAAAACACGAAATTTTAC 60.514 37.037 0.00 0.00 32.44 2.01
462 463 5.593968 AGGGTCAAAACACGAAATTTTACC 58.406 37.500 0.00 0.00 32.44 2.85
516 521 3.733344 GATAGGGTGAAGGCGCGCA 62.733 63.158 34.42 9.57 39.66 6.09
694 706 4.492160 TCGCGCACCCTCGTGATC 62.492 66.667 8.75 0.00 43.02 2.92
700 712 1.755395 CACCCTCGTGATCCCGGTA 60.755 63.158 0.00 0.00 43.14 4.02
911 927 1.211818 CGTGAATCCTAGCTGCTCGC 61.212 60.000 4.91 0.00 39.57 5.03
949 965 4.506255 CCCCGCCCAACTCCCATC 62.506 72.222 0.00 0.00 0.00 3.51
1143 1163 4.052229 AAGCCCGTCGACGACCTG 62.052 66.667 37.65 22.57 43.02 4.00
1565 1591 8.634335 TCTCCATTGATTTGTTTATGTCTGAA 57.366 30.769 0.00 0.00 0.00 3.02
1703 1760 7.335627 TCGAGAAAATTATGTATTCACTGGGT 58.664 34.615 0.00 0.00 0.00 4.51
1713 1770 4.699735 TGTATTCACTGGGTTAGCAATGTG 59.300 41.667 0.00 0.00 0.00 3.21
1740 1797 2.110213 GTGAACGGGTGCCTGTCA 59.890 61.111 2.81 1.37 33.90 3.58
2060 2122 2.700897 ACCTCCTCCGATCGATTTTCAT 59.299 45.455 18.66 0.00 0.00 2.57
2078 2140 8.592105 ATTTTCATTTGATTTGCTTTCGAAGA 57.408 26.923 0.00 0.00 0.00 2.87
2100 2162 2.436115 GGTTAGCCTGGTCCGTGC 60.436 66.667 0.00 0.00 0.00 5.34
2144 2209 2.740055 CGTGCTCCCTGTGAGTGC 60.740 66.667 0.00 0.00 43.48 4.40
2147 2212 2.125753 GCTCCCTGTGAGTGCGAG 60.126 66.667 0.00 0.00 43.48 5.03
2232 2299 1.671379 GTGAACCTCGGAACCTGGC 60.671 63.158 0.00 0.00 0.00 4.85
2293 2360 8.302965 AGACCACTTTATGTCTTAAAACGTAC 57.697 34.615 0.00 0.00 38.67 3.67
2294 2361 8.146412 AGACCACTTTATGTCTTAAAACGTACT 58.854 33.333 0.00 0.00 38.67 2.73
2296 2363 9.415544 ACCACTTTATGTCTTAAAACGTACTAG 57.584 33.333 0.00 0.00 29.52 2.57
2297 2364 9.415544 CCACTTTATGTCTTAAAACGTACTAGT 57.584 33.333 0.00 0.00 29.52 2.57
2303 2370 7.801547 TGTCTTAAAACGTACTAGTACATGC 57.198 36.000 28.03 6.07 35.87 4.06
2304 2371 7.596494 TGTCTTAAAACGTACTAGTACATGCT 58.404 34.615 28.03 14.41 35.87 3.79
2305 2372 8.729756 TGTCTTAAAACGTACTAGTACATGCTA 58.270 33.333 28.03 13.56 35.87 3.49
2306 2373 9.219497 GTCTTAAAACGTACTAGTACATGCTAG 57.781 37.037 28.03 17.94 42.96 3.42
2307 2374 9.166173 TCTTAAAACGTACTAGTACATGCTAGA 57.834 33.333 28.03 19.47 40.54 2.43
2308 2375 9.219497 CTTAAAACGTACTAGTACATGCTAGAC 57.781 37.037 28.03 5.35 40.54 2.59
2309 2376 6.998968 AAACGTACTAGTACATGCTAGACT 57.001 37.500 28.03 5.22 40.54 3.24
2310 2377 6.601741 AACGTACTAGTACATGCTAGACTC 57.398 41.667 28.03 1.91 40.54 3.36
2335 2402 2.819984 ATCAAACGACCGCCATGGCT 62.820 55.000 33.07 17.14 43.94 4.75
2356 2423 1.338973 GGTCACGTTCCTGTCTGTACA 59.661 52.381 0.00 0.00 0.00 2.90
2363 2430 3.119137 CGTTCCTGTCTGTACATCCATGA 60.119 47.826 0.00 0.00 34.37 3.07
2384 2451 6.691754 TGATGTTATGCCATTCGTTACATT 57.308 33.333 0.00 0.00 34.98 2.71
2385 2452 7.094508 TGATGTTATGCCATTCGTTACATTT 57.905 32.000 0.00 0.00 34.98 2.32
2386 2453 8.214721 TGATGTTATGCCATTCGTTACATTTA 57.785 30.769 0.00 0.00 34.98 1.40
2387 2454 8.126074 TGATGTTATGCCATTCGTTACATTTAC 58.874 33.333 0.00 0.00 34.98 2.01
2388 2455 7.379098 TGTTATGCCATTCGTTACATTTACA 57.621 32.000 0.00 0.00 0.00 2.41
2389 2456 7.990917 TGTTATGCCATTCGTTACATTTACAT 58.009 30.769 0.00 0.00 0.00 2.29
2646 2717 3.187637 GCATTGCTTCACTTACCGTTACA 59.812 43.478 0.16 0.00 0.00 2.41
2664 2735 6.073765 CCGTTACAATCCATGCTATGTTACTC 60.074 42.308 9.09 0.00 0.00 2.59
2818 2889 5.234116 GCCTTGTCAAAATTGAAAACGACAT 59.766 36.000 0.00 0.00 39.21 3.06
2835 2906 9.661563 AAAACGACATAAGATATTCAAGGTACA 57.338 29.630 0.00 0.00 0.00 2.90
2915 3005 4.274459 AGTGAAGCTGCAGTCTGTTTTTAG 59.726 41.667 16.64 0.00 0.00 1.85
2925 3015 6.654582 TGCAGTCTGTTTTTAGCATGATTCTA 59.345 34.615 0.00 0.00 0.00 2.10
3038 3145 2.202987 CGTGCCAGGGAGCATCTC 60.203 66.667 0.00 0.00 46.24 2.75
3078 3185 4.173924 GGCCAGCTGCTCTCCTCC 62.174 72.222 8.66 0.00 40.92 4.30
3087 3194 1.251527 TGCTCTCCTCCGTGTCTTCC 61.252 60.000 0.00 0.00 0.00 3.46
3135 3242 0.037590 TGGAAAACTATGCGGCACCT 59.962 50.000 4.03 0.00 0.00 4.00
3222 3329 8.338259 CAATATTCAGGTACAATCTACAACAGC 58.662 37.037 0.00 0.00 0.00 4.40
3234 3341 7.770433 ACAATCTACAACAGCATAATAGCTCAA 59.230 33.333 0.00 0.00 44.54 3.02
3245 3352 8.871862 CAGCATAATAGCTCAAAGATATCAGAC 58.128 37.037 5.32 0.00 44.54 3.51
3259 3366 0.390492 TCAGACATCTAGGCCATGCG 59.610 55.000 5.01 0.00 0.00 4.73
3404 3511 3.698029 ACATGTCAGTGTTTCAAGTGC 57.302 42.857 0.00 0.00 0.00 4.40
3406 3513 1.013596 TGTCAGTGTTTCAAGTGCCG 58.986 50.000 0.00 0.00 0.00 5.69
3408 3515 1.668751 GTCAGTGTTTCAAGTGCCGAA 59.331 47.619 0.00 0.00 0.00 4.30
3421 3528 1.586028 GCCGAAGCAATTGAAGGCA 59.414 52.632 21.05 0.00 43.65 4.75
3428 3535 1.206371 AGCAATTGAAGGCAATGGAGC 59.794 47.619 10.34 0.00 43.71 4.70
3635 3742 7.041167 TGTGGATTTGATCACAGTTTACTGAAG 60.041 37.037 16.31 8.44 46.59 3.02
3651 3759 1.408702 TGAAGTGCAGGTTCTTTTGGC 59.591 47.619 9.55 0.00 0.00 4.52
3702 3810 8.531622 GTTCTGTAAGTACCTTAGACTTTTCC 57.468 38.462 0.00 0.00 38.16 3.13
3705 3813 7.001099 TGTAAGTACCTTAGACTTTTCCCTG 57.999 40.000 0.00 0.00 38.16 4.45
3716 3824 2.106684 ACTTTTCCCTGTGGAGACCTTC 59.893 50.000 0.00 0.00 43.07 3.46
3722 3830 2.289945 CCCTGTGGAGACCTTCTTTCTG 60.290 54.545 0.00 0.00 0.00 3.02
3724 3832 3.556004 CCTGTGGAGACCTTCTTTCTGTC 60.556 52.174 0.00 0.00 0.00 3.51
3757 3865 4.970711 AGTATCCTTTGCAGAGATCATGG 58.029 43.478 5.68 0.00 0.00 3.66
3760 3868 4.305539 TCCTTTGCAGAGATCATGGAAA 57.694 40.909 5.68 14.09 35.90 3.13
3788 3896 5.645067 GGTTGTAGTTTTGGGTATGTAGGAC 59.355 44.000 0.00 0.00 0.00 3.85
3836 3944 0.590195 GTGTTGGTGAAGCTCAGCTG 59.410 55.000 7.63 7.63 44.58 4.24
3848 3956 3.608796 AGCTCAGCTGAAAGAATTCCTC 58.391 45.455 18.85 0.00 37.57 3.71
3858 3966 6.237154 CTGAAAGAATTCCTCAGAGAGGTTT 58.763 40.000 22.28 8.01 43.57 3.27
3865 3973 3.131709 CCTCAGAGAGGTTTGCTTCAA 57.868 47.619 0.00 0.00 44.25 2.69
3867 3975 3.470709 CTCAGAGAGGTTTGCTTCAACA 58.529 45.455 0.00 0.00 0.00 3.33
3915 4023 6.803642 ACTTACGGTTAGTATGGATCTCAAC 58.196 40.000 0.00 0.00 35.49 3.18
3916 4024 6.606395 ACTTACGGTTAGTATGGATCTCAACT 59.394 38.462 0.00 0.00 35.49 3.16
3917 4025 5.263968 ACGGTTAGTATGGATCTCAACTG 57.736 43.478 0.00 0.00 0.00 3.16
3918 4026 4.710375 ACGGTTAGTATGGATCTCAACTGT 59.290 41.667 0.00 0.00 32.20 3.55
3919 4027 5.163540 ACGGTTAGTATGGATCTCAACTGTC 60.164 44.000 0.00 0.00 31.60 3.51
3920 4028 5.067936 CGGTTAGTATGGATCTCAACTGTCT 59.932 44.000 0.00 0.00 0.00 3.41
3921 4029 6.405953 CGGTTAGTATGGATCTCAACTGTCTT 60.406 42.308 0.00 0.00 0.00 3.01
3923 4031 7.147811 GGTTAGTATGGATCTCAACTGTCTTCT 60.148 40.741 0.00 0.00 0.00 2.85
3927 4035 8.816894 AGTATGGATCTCAACTGTCTTCTTTAA 58.183 33.333 0.00 0.00 0.00 1.52
3928 4036 9.606631 GTATGGATCTCAACTGTCTTCTTTAAT 57.393 33.333 0.00 0.00 0.00 1.40
3930 4038 8.553459 TGGATCTCAACTGTCTTCTTTAATTC 57.447 34.615 0.00 0.00 0.00 2.17
3931 4039 7.331934 TGGATCTCAACTGTCTTCTTTAATTCG 59.668 37.037 0.00 0.00 0.00 3.34
3932 4040 7.201565 GGATCTCAACTGTCTTCTTTAATTCGG 60.202 40.741 0.00 0.00 0.00 4.30
3934 4042 5.860611 TCAACTGTCTTCTTTAATTCGGGA 58.139 37.500 0.00 0.00 0.00 5.14
3935 4043 5.699458 TCAACTGTCTTCTTTAATTCGGGAC 59.301 40.000 0.00 0.00 0.00 4.46
3936 4044 5.223449 ACTGTCTTCTTTAATTCGGGACA 57.777 39.130 0.00 0.00 0.00 4.02
3937 4045 4.995487 ACTGTCTTCTTTAATTCGGGACAC 59.005 41.667 0.00 0.00 0.00 3.67
3938 4046 5.221661 ACTGTCTTCTTTAATTCGGGACACT 60.222 40.000 0.00 0.00 0.00 3.55
3939 4047 5.617252 TGTCTTCTTTAATTCGGGACACTT 58.383 37.500 0.00 0.00 0.00 3.16
3940 4048 6.059484 TGTCTTCTTTAATTCGGGACACTTT 58.941 36.000 0.00 0.00 0.00 2.66
3941 4049 6.544564 TGTCTTCTTTAATTCGGGACACTTTT 59.455 34.615 0.00 0.00 0.00 2.27
3942 4050 6.856426 GTCTTCTTTAATTCGGGACACTTTTG 59.144 38.462 0.00 0.00 0.00 2.44
3943 4051 5.699097 TCTTTAATTCGGGACACTTTTGG 57.301 39.130 0.00 0.00 0.00 3.28
3944 4052 5.378332 TCTTTAATTCGGGACACTTTTGGA 58.622 37.500 0.00 0.00 0.00 3.53
3945 4053 5.239963 TCTTTAATTCGGGACACTTTTGGAC 59.760 40.000 0.00 0.00 0.00 4.02
3946 4054 2.649531 ATTCGGGACACTTTTGGACA 57.350 45.000 0.00 0.00 0.00 4.02
3950 4064 1.953686 CGGGACACTTTTGGACATTGT 59.046 47.619 0.00 0.00 0.00 2.71
3976 4090 4.921547 TCTCTATCATGAAACGAGTTCGG 58.078 43.478 0.00 0.00 44.95 4.30
4051 4165 3.065786 CGATAGTAACCGAGTACTTGCCA 59.934 47.826 4.39 0.00 35.85 4.92
4062 4176 2.444010 AGTACTTGCCAAGGTAAACCCA 59.556 45.455 9.64 0.00 36.42 4.51
4065 4179 2.035632 CTTGCCAAGGTAAACCCACAA 58.964 47.619 0.00 0.00 36.42 3.33
4071 4201 4.097892 GCCAAGGTAAACCCACAATATGAG 59.902 45.833 0.00 0.00 36.42 2.90
4215 4345 8.729756 GCATGGCATTAGATGTTGTATGTATTA 58.270 33.333 0.00 0.00 0.00 0.98
4248 4378 5.130145 ACTTCTACAGATAAGCATGCTCCTT 59.870 40.000 22.93 8.31 0.00 3.36
4273 4403 3.130693 ACGTTACTAGTCTCCCTGAATGC 59.869 47.826 0.00 0.00 0.00 3.56
4313 4443 2.825861 CTGAAATGCAGGCAAAAGGT 57.174 45.000 0.00 0.00 41.07 3.50
4331 4461 6.875972 AAAGGTATCAACTATCTCCACTGT 57.124 37.500 0.00 0.00 0.00 3.55
4334 4464 5.830991 AGGTATCAACTATCTCCACTGTCTC 59.169 44.000 0.00 0.00 0.00 3.36
4382 4512 1.609208 AGACACCAAACATGCTGGTC 58.391 50.000 15.50 7.42 44.05 4.02
4414 4544 5.131475 ACTGGTCTGTAAAGGTTAGTTGGAA 59.869 40.000 0.00 0.00 0.00 3.53
4420 4550 8.451748 GTCTGTAAAGGTTAGTTGGAATTCATC 58.548 37.037 7.93 0.00 0.00 2.92
4422 4552 8.934023 TGTAAAGGTTAGTTGGAATTCATCTT 57.066 30.769 7.93 0.00 0.00 2.40
4425 4555 7.631717 AAGGTTAGTTGGAATTCATCTTAGC 57.368 36.000 7.93 5.97 0.00 3.09
4427 4557 7.349598 AGGTTAGTTGGAATTCATCTTAGCAT 58.650 34.615 7.93 0.00 29.65 3.79
4428 4558 7.284034 AGGTTAGTTGGAATTCATCTTAGCATG 59.716 37.037 7.93 0.00 29.65 4.06
4430 4560 8.844244 GTTAGTTGGAATTCATCTTAGCATGAT 58.156 33.333 7.93 0.00 32.69 2.45
4433 4563 5.857268 TGGAATTCATCTTAGCATGATCGA 58.143 37.500 7.93 0.00 32.69 3.59
4435 4565 6.767423 TGGAATTCATCTTAGCATGATCGAAA 59.233 34.615 7.93 0.00 32.69 3.46
4443 4584 1.066605 AGCATGATCGAAAATGGCTGC 59.933 47.619 11.40 0.00 0.00 5.25
4452 4593 2.603953 GAAAATGGCTGCTCTGCTTTC 58.396 47.619 0.00 0.00 0.00 2.62
4498 4639 1.618837 TGACTGCAGGTAGGTGACTTC 59.381 52.381 19.93 2.57 43.67 3.01
4574 4715 2.816087 ACAGTAAGCTTTGCATGACAGG 59.184 45.455 3.20 0.00 0.00 4.00
4661 4803 0.325933 CAGAGTGGATGGCACCAGAA 59.674 55.000 8.73 0.00 40.85 3.02
4791 4933 5.183904 GCACAAGTAACCTTCCATCTCATTT 59.816 40.000 0.00 0.00 0.00 2.32
4792 4934 6.623767 GCACAAGTAACCTTCCATCTCATTTC 60.624 42.308 0.00 0.00 0.00 2.17
4796 4938 6.784031 AGTAACCTTCCATCTCATTTCTGTT 58.216 36.000 0.00 0.00 0.00 3.16
4870 5016 6.835029 AATATTTACAGGTAGTAGGGGCAA 57.165 37.500 0.00 0.00 33.43 4.52
4875 5021 1.212935 CAGGTAGTAGGGGCAATTGCT 59.787 52.381 28.42 12.82 41.70 3.91
4976 5122 1.551883 AGCAAATTTCCCATGACCTGC 59.448 47.619 0.00 0.00 0.00 4.85
5007 5153 5.117592 CCTTGATCAAAATTTCAAGTGACGC 59.882 40.000 9.88 2.66 44.70 5.19
5015 5161 1.737838 TTCAAGTGACGCCATCCATC 58.262 50.000 0.00 0.00 0.00 3.51
5052 5198 7.806014 ACGTTTAAAACAAAATATCATCAGCGT 59.194 29.630 0.00 0.00 0.00 5.07
5070 5216 3.972502 AGCGTTAACACGATTTTGCTTTC 59.027 39.130 6.39 0.00 44.36 2.62
5105 5251 2.173382 CAGCGCCCTTCGTTTTCG 59.827 61.111 2.29 0.00 45.64 3.46
5198 5393 2.351726 CCGGCCATTCTTTTTCTCTACG 59.648 50.000 2.24 0.00 0.00 3.51
5225 5420 6.535150 TCTGTCGATTAAAGCTAATCCACAAG 59.465 38.462 9.87 5.96 41.87 3.16
5336 5535 3.578688 GTTTCCTGACCATTCATGTTGC 58.421 45.455 0.00 0.00 0.00 4.17
5339 5538 2.173519 CCTGACCATTCATGTTGCCTT 58.826 47.619 0.00 0.00 0.00 4.35
5348 5547 6.437162 ACCATTCATGTTGCCTTTGTATAGTT 59.563 34.615 0.00 0.00 0.00 2.24
5377 5576 6.976636 AGCTACAAATTCAAAGCTCTAGAC 57.023 37.500 3.29 0.00 41.35 2.59
5383 5582 4.537135 ATTCAAAGCTCTAGACGGTCAA 57.463 40.909 11.27 0.00 0.00 3.18
5417 5616 5.957842 TGTAAAATGTCCTGAATGTGTCC 57.042 39.130 0.00 0.00 0.00 4.02
5445 5644 2.110578 TCTACTGGCTGAGCAATAGCA 58.889 47.619 6.82 0.00 45.49 3.49
5504 5703 6.579666 ACAAACATAACTGCTCACATGATT 57.420 33.333 0.00 0.00 0.00 2.57
5511 5710 1.863454 CTGCTCACATGATTCTACGCC 59.137 52.381 0.00 0.00 0.00 5.68
5551 5755 4.036734 TCAAAGCATCCAACTGAACTGAAC 59.963 41.667 0.00 0.00 0.00 3.18
5552 5756 3.498774 AGCATCCAACTGAACTGAACT 57.501 42.857 0.00 0.00 0.00 3.01
5553 5757 3.825328 AGCATCCAACTGAACTGAACTT 58.175 40.909 0.00 0.00 0.00 2.66
5554 5758 4.973168 AGCATCCAACTGAACTGAACTTA 58.027 39.130 0.00 0.00 0.00 2.24
5555 5759 5.564550 AGCATCCAACTGAACTGAACTTAT 58.435 37.500 0.00 0.00 0.00 1.73
5616 5820 6.808008 ACATATCCAACTGAACTGAACTTG 57.192 37.500 0.00 0.00 0.00 3.16
5630 5834 7.916977 TGAACTGAACTTGAATGAATTTCACAG 59.083 33.333 0.15 4.78 43.99 3.66
5685 5889 4.953269 TCATCGTTTTTAGCATCGTCAAC 58.047 39.130 0.00 0.00 0.00 3.18
5694 5898 1.078426 CATCGTCAACCAGTCCCCC 60.078 63.158 0.00 0.00 0.00 5.40
5695 5899 1.229529 ATCGTCAACCAGTCCCCCT 60.230 57.895 0.00 0.00 0.00 4.79
5698 5902 1.846124 GTCAACCAGTCCCCCTCCA 60.846 63.158 0.00 0.00 0.00 3.86
5699 5903 1.073319 TCAACCAGTCCCCCTCCAA 60.073 57.895 0.00 0.00 0.00 3.53
5706 5910 2.608623 CAGTCCCCCTCCAATGTTTTT 58.391 47.619 0.00 0.00 0.00 1.94
5727 5931 7.938563 TTTTAACAGAAATTCCACCATTTCG 57.061 32.000 0.00 0.00 44.66 3.46
5761 5965 5.411669 ACGCATATCACGAGACATGACTATA 59.588 40.000 5.24 0.00 0.00 1.31
5764 5968 8.286097 CGCATATCACGAGACATGACTATATAT 58.714 37.037 5.24 0.00 0.00 0.86
5784 5988 1.871676 TCATCTAGACCGATCGTTCCG 59.128 52.381 15.09 3.83 0.00 4.30
5800 6004 4.081531 TCGTTCCGTGGGACAAAATACTAT 60.082 41.667 0.00 0.00 44.16 2.12
5862 6066 2.169561 TGCAAGTTATACCATCCGCTCA 59.830 45.455 0.00 0.00 0.00 4.26
5899 6103 3.991605 GTGTTTCGCAGATTACACGAT 57.008 42.857 0.00 0.00 40.63 3.73
5996 6200 0.608035 TCGCCATGTGGAAAAGGACC 60.608 55.000 2.55 0.00 37.39 4.46
6091 6295 6.846283 GCAGCGTTAACAATCATACAATCTAC 59.154 38.462 6.39 0.00 0.00 2.59
6092 6296 7.345192 CAGCGTTAACAATCATACAATCTACC 58.655 38.462 6.39 0.00 0.00 3.18
6143 6352 1.195448 CAGCTTAGTGGTTTGCACTCG 59.805 52.381 0.00 0.00 34.38 4.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.321435 ACGAGGTCACATCATTAGTAGAATGA 59.679 38.462 2.66 2.66 40.50 2.57
1 2 6.507900 ACGAGGTCACATCATTAGTAGAATG 58.492 40.000 0.00 0.00 0.00 2.67
2 3 6.716934 ACGAGGTCACATCATTAGTAGAAT 57.283 37.500 0.00 0.00 0.00 2.40
3 4 6.525578 AACGAGGTCACATCATTAGTAGAA 57.474 37.500 0.00 0.00 0.00 2.10
4 5 7.634671 TTAACGAGGTCACATCATTAGTAGA 57.365 36.000 0.00 0.00 0.00 2.59
5 6 8.135529 TGATTAACGAGGTCACATCATTAGTAG 58.864 37.037 0.00 0.00 0.00 2.57
6 7 8.002984 TGATTAACGAGGTCACATCATTAGTA 57.997 34.615 0.00 0.00 0.00 1.82
7 8 6.873997 TGATTAACGAGGTCACATCATTAGT 58.126 36.000 0.00 0.00 0.00 2.24
8 9 7.770801 TTGATTAACGAGGTCACATCATTAG 57.229 36.000 0.00 0.00 0.00 1.73
9 10 8.731275 ATTTGATTAACGAGGTCACATCATTA 57.269 30.769 0.00 0.00 0.00 1.90
10 11 7.630242 ATTTGATTAACGAGGTCACATCATT 57.370 32.000 0.00 0.00 0.00 2.57
11 12 8.612619 GTTATTTGATTAACGAGGTCACATCAT 58.387 33.333 0.00 0.00 0.00 2.45
12 13 7.604545 TGTTATTTGATTAACGAGGTCACATCA 59.395 33.333 0.00 0.00 35.30 3.07
13 14 7.970384 TGTTATTTGATTAACGAGGTCACATC 58.030 34.615 0.00 0.00 35.30 3.06
14 15 7.915293 TGTTATTTGATTAACGAGGTCACAT 57.085 32.000 0.00 0.00 35.30 3.21
15 16 7.442969 AGTTGTTATTTGATTAACGAGGTCACA 59.557 33.333 0.00 0.00 35.30 3.58
16 17 7.803724 AGTTGTTATTTGATTAACGAGGTCAC 58.196 34.615 0.00 0.00 35.30 3.67
17 18 7.658167 TGAGTTGTTATTTGATTAACGAGGTCA 59.342 33.333 0.00 0.00 35.30 4.02
18 19 8.025243 TGAGTTGTTATTTGATTAACGAGGTC 57.975 34.615 0.00 0.00 35.30 3.85
19 20 7.972832 TGAGTTGTTATTTGATTAACGAGGT 57.027 32.000 0.00 0.00 35.30 3.85
20 21 9.277565 CAATGAGTTGTTATTTGATTAACGAGG 57.722 33.333 0.00 0.00 35.30 4.63
21 22 9.825972 ACAATGAGTTGTTATTTGATTAACGAG 57.174 29.630 0.00 0.00 46.07 4.18
37 38 6.573664 TTCCTAACCATGAACAATGAGTTG 57.426 37.500 0.00 0.00 41.51 3.16
38 39 6.777580 AGTTTCCTAACCATGAACAATGAGTT 59.222 34.615 0.00 0.00 37.85 3.01
39 40 6.306987 AGTTTCCTAACCATGAACAATGAGT 58.693 36.000 0.00 0.00 36.21 3.41
40 41 6.824305 AGTTTCCTAACCATGAACAATGAG 57.176 37.500 0.00 0.00 36.21 2.90
41 42 8.573035 GTTAAGTTTCCTAACCATGAACAATGA 58.427 33.333 0.00 0.00 36.21 2.57
42 43 7.812669 GGTTAAGTTTCCTAACCATGAACAATG 59.187 37.037 6.84 0.00 41.99 2.82
43 44 7.507616 TGGTTAAGTTTCCTAACCATGAACAAT 59.492 33.333 9.79 0.00 45.67 2.71
44 45 6.834451 TGGTTAAGTTTCCTAACCATGAACAA 59.166 34.615 9.79 0.00 45.67 2.83
45 46 6.366340 TGGTTAAGTTTCCTAACCATGAACA 58.634 36.000 9.79 0.00 45.67 3.18
46 47 6.887626 TGGTTAAGTTTCCTAACCATGAAC 57.112 37.500 9.79 0.00 45.67 3.18
52 53 7.754851 TCAAAGATGGTTAAGTTTCCTAACC 57.245 36.000 5.05 5.05 42.55 2.85
56 57 8.512138 CGTTAATCAAAGATGGTTAAGTTTCCT 58.488 33.333 0.00 0.00 41.55 3.36
57 58 8.508875 TCGTTAATCAAAGATGGTTAAGTTTCC 58.491 33.333 0.00 0.00 41.55 3.13
58 59 9.543018 CTCGTTAATCAAAGATGGTTAAGTTTC 57.457 33.333 0.00 0.00 41.55 2.78
59 60 8.021396 GCTCGTTAATCAAAGATGGTTAAGTTT 58.979 33.333 0.00 0.00 41.55 2.66
60 61 7.390718 AGCTCGTTAATCAAAGATGGTTAAGTT 59.609 33.333 0.00 0.00 41.55 2.66
61 62 6.879458 AGCTCGTTAATCAAAGATGGTTAAGT 59.121 34.615 0.00 0.00 41.55 2.24
62 63 7.308782 AGCTCGTTAATCAAAGATGGTTAAG 57.691 36.000 0.00 0.00 41.55 1.85
63 64 8.038944 ACTAGCTCGTTAATCAAAGATGGTTAA 58.961 33.333 0.00 0.00 39.28 2.01
64 65 7.553334 ACTAGCTCGTTAATCAAAGATGGTTA 58.447 34.615 0.00 0.00 30.84 2.85
65 66 6.407202 ACTAGCTCGTTAATCAAAGATGGTT 58.593 36.000 0.00 0.00 33.49 3.67
66 67 5.978814 ACTAGCTCGTTAATCAAAGATGGT 58.021 37.500 0.00 0.00 0.00 3.55
67 68 6.042777 TGACTAGCTCGTTAATCAAAGATGG 58.957 40.000 0.00 0.00 0.00 3.51
68 69 7.276658 ACTTGACTAGCTCGTTAATCAAAGATG 59.723 37.037 0.00 0.00 0.00 2.90
69 70 7.324178 ACTTGACTAGCTCGTTAATCAAAGAT 58.676 34.615 0.00 0.00 0.00 2.40
70 71 6.688578 ACTTGACTAGCTCGTTAATCAAAGA 58.311 36.000 0.00 0.00 0.00 2.52
71 72 6.952935 ACTTGACTAGCTCGTTAATCAAAG 57.047 37.500 0.00 0.00 0.00 2.77
72 73 7.823665 TCTACTTGACTAGCTCGTTAATCAAA 58.176 34.615 0.00 0.00 0.00 2.69
73 74 7.387119 TCTACTTGACTAGCTCGTTAATCAA 57.613 36.000 0.00 0.00 0.00 2.57
74 75 6.038382 CCTCTACTTGACTAGCTCGTTAATCA 59.962 42.308 0.00 0.00 0.00 2.57
75 76 6.432107 CCTCTACTTGACTAGCTCGTTAATC 58.568 44.000 0.00 0.00 0.00 1.75
76 77 5.221087 GCCTCTACTTGACTAGCTCGTTAAT 60.221 44.000 0.00 0.00 0.00 1.40
77 78 4.096081 GCCTCTACTTGACTAGCTCGTTAA 59.904 45.833 0.00 0.00 0.00 2.01
78 79 3.626670 GCCTCTACTTGACTAGCTCGTTA 59.373 47.826 0.00 0.00 0.00 3.18
79 80 2.424246 GCCTCTACTTGACTAGCTCGTT 59.576 50.000 0.00 0.00 0.00 3.85
80 81 2.018515 GCCTCTACTTGACTAGCTCGT 58.981 52.381 0.00 0.00 0.00 4.18
81 82 2.017782 TGCCTCTACTTGACTAGCTCG 58.982 52.381 0.00 0.00 0.00 5.03
82 83 4.825085 AGTATGCCTCTACTTGACTAGCTC 59.175 45.833 0.00 0.00 0.00 4.09
83 84 4.798882 AGTATGCCTCTACTTGACTAGCT 58.201 43.478 0.00 0.00 0.00 3.32
84 85 5.766174 ACTAGTATGCCTCTACTTGACTAGC 59.234 44.000 0.00 0.00 38.86 3.42
85 86 6.993308 TCACTAGTATGCCTCTACTTGACTAG 59.007 42.308 0.00 0.00 40.35 2.57
86 87 6.766944 GTCACTAGTATGCCTCTACTTGACTA 59.233 42.308 0.00 0.00 36.95 2.59
87 88 5.591067 GTCACTAGTATGCCTCTACTTGACT 59.409 44.000 0.00 0.00 36.95 3.41
88 89 5.357314 TGTCACTAGTATGCCTCTACTTGAC 59.643 44.000 0.00 11.98 38.64 3.18
89 90 5.357314 GTGTCACTAGTATGCCTCTACTTGA 59.643 44.000 0.00 0.18 33.96 3.02
90 91 5.358442 AGTGTCACTAGTATGCCTCTACTTG 59.642 44.000 2.87 0.00 33.96 3.16
91 92 5.511363 AGTGTCACTAGTATGCCTCTACTT 58.489 41.667 2.87 0.00 33.96 2.24
92 93 5.104277 AGAGTGTCACTAGTATGCCTCTACT 60.104 44.000 5.21 0.00 36.04 2.57
93 94 5.008217 CAGAGTGTCACTAGTATGCCTCTAC 59.992 48.000 5.21 0.00 0.00 2.59
94 95 5.126779 CAGAGTGTCACTAGTATGCCTCTA 58.873 45.833 5.21 0.00 0.00 2.43
95 96 3.951037 CAGAGTGTCACTAGTATGCCTCT 59.049 47.826 5.21 1.89 0.00 3.69
96 97 3.697045 ACAGAGTGTCACTAGTATGCCTC 59.303 47.826 5.21 0.00 0.00 4.70
97 98 3.702792 ACAGAGTGTCACTAGTATGCCT 58.297 45.455 5.21 0.00 0.00 4.75
98 99 4.457834 AACAGAGTGTCACTAGTATGCC 57.542 45.455 5.21 0.00 0.00 4.40
99 100 5.230942 ACAAACAGAGTGTCACTAGTATGC 58.769 41.667 5.21 0.00 0.00 3.14
100 101 6.682746 AGACAAACAGAGTGTCACTAGTATG 58.317 40.000 5.21 5.56 46.44 2.39
101 102 6.902771 AGACAAACAGAGTGTCACTAGTAT 57.097 37.500 5.21 0.00 46.44 2.12
102 103 7.447545 ACATAGACAAACAGAGTGTCACTAGTA 59.552 37.037 5.21 0.00 46.44 1.82
103 104 6.265649 ACATAGACAAACAGAGTGTCACTAGT 59.734 38.462 5.21 5.11 46.44 2.57
104 105 6.682746 ACATAGACAAACAGAGTGTCACTAG 58.317 40.000 5.21 4.44 46.44 2.57
105 106 6.650427 ACATAGACAAACAGAGTGTCACTA 57.350 37.500 5.21 0.00 46.44 2.74
106 107 5.537300 ACATAGACAAACAGAGTGTCACT 57.463 39.130 4.81 4.81 46.44 3.41
107 108 7.598869 TGAATACATAGACAAACAGAGTGTCAC 59.401 37.037 7.26 0.00 46.44 3.67
108 109 7.598869 GTGAATACATAGACAAACAGAGTGTCA 59.401 37.037 7.26 0.00 46.44 3.58
109 110 7.598869 TGTGAATACATAGACAAACAGAGTGTC 59.401 37.037 0.00 0.00 44.75 3.67
110 111 7.385205 GTGTGAATACATAGACAAACAGAGTGT 59.615 37.037 0.00 0.00 39.39 3.55
111 112 7.384932 TGTGTGAATACATAGACAAACAGAGTG 59.615 37.037 0.00 0.00 39.39 3.51
112 113 7.441836 TGTGTGAATACATAGACAAACAGAGT 58.558 34.615 0.00 0.00 39.39 3.24
113 114 7.889589 TGTGTGAATACATAGACAAACAGAG 57.110 36.000 0.00 0.00 39.39 3.35
114 115 7.877612 ACATGTGTGAATACATAGACAAACAGA 59.122 33.333 0.00 0.00 39.17 3.41
115 116 8.032952 ACATGTGTGAATACATAGACAAACAG 57.967 34.615 0.00 0.00 39.17 3.16
116 117 7.977789 ACATGTGTGAATACATAGACAAACA 57.022 32.000 0.00 0.00 39.17 2.83
126 127 8.608317 CGGAAACATAATACATGTGTGAATACA 58.392 33.333 9.11 0.00 34.63 2.29
127 128 8.067784 CCGGAAACATAATACATGTGTGAATAC 58.932 37.037 9.11 0.00 31.80 1.89
128 129 7.771361 ACCGGAAACATAATACATGTGTGAATA 59.229 33.333 9.46 0.00 31.80 1.75
129 130 6.601613 ACCGGAAACATAATACATGTGTGAAT 59.398 34.615 9.46 0.00 31.80 2.57
130 131 5.941058 ACCGGAAACATAATACATGTGTGAA 59.059 36.000 9.46 0.00 31.80 3.18
131 132 5.492895 ACCGGAAACATAATACATGTGTGA 58.507 37.500 9.46 0.00 31.80 3.58
132 133 5.811399 ACCGGAAACATAATACATGTGTG 57.189 39.130 9.46 4.81 31.80 3.82
133 134 7.925043 TTTACCGGAAACATAATACATGTGT 57.075 32.000 9.46 0.00 31.80 3.72
134 135 9.872757 GTATTTACCGGAAACATAATACATGTG 57.127 33.333 9.46 0.00 31.80 3.21
135 136 9.616156 TGTATTTACCGGAAACATAATACATGT 57.384 29.630 9.46 2.69 0.00 3.21
143 144 9.048446 GCTAGAATTGTATTTACCGGAAACATA 57.952 33.333 9.46 0.00 0.00 2.29
144 145 7.554835 TGCTAGAATTGTATTTACCGGAAACAT 59.445 33.333 9.46 0.00 0.00 2.71
145 146 6.879993 TGCTAGAATTGTATTTACCGGAAACA 59.120 34.615 9.46 1.34 0.00 2.83
146 147 7.311364 TGCTAGAATTGTATTTACCGGAAAC 57.689 36.000 9.46 0.00 0.00 2.78
147 148 7.771361 TCATGCTAGAATTGTATTTACCGGAAA 59.229 33.333 9.46 4.83 0.00 3.13
148 149 7.276658 TCATGCTAGAATTGTATTTACCGGAA 58.723 34.615 9.46 0.00 0.00 4.30
149 150 6.822442 TCATGCTAGAATTGTATTTACCGGA 58.178 36.000 9.46 0.00 0.00 5.14
150 151 7.490962 TTCATGCTAGAATTGTATTTACCGG 57.509 36.000 0.00 0.00 0.00 5.28
226 227 4.646572 GTGAAGGAAATATGCCCTAGAGG 58.353 47.826 0.00 0.00 39.47 3.69
227 228 4.310769 CGTGAAGGAAATATGCCCTAGAG 58.689 47.826 0.00 0.00 31.36 2.43
228 229 3.071023 CCGTGAAGGAAATATGCCCTAGA 59.929 47.826 0.00 0.00 45.00 2.43
229 230 3.403038 CCGTGAAGGAAATATGCCCTAG 58.597 50.000 0.00 0.00 45.00 3.02
230 231 2.486548 GCCGTGAAGGAAATATGCCCTA 60.487 50.000 0.00 0.00 45.00 3.53
231 232 1.750682 GCCGTGAAGGAAATATGCCCT 60.751 52.381 0.00 0.00 45.00 5.19
232 233 0.668535 GCCGTGAAGGAAATATGCCC 59.331 55.000 0.00 0.00 45.00 5.36
233 234 0.307760 CGCCGTGAAGGAAATATGCC 59.692 55.000 0.00 0.00 45.00 4.40
234 235 0.307760 CCGCCGTGAAGGAAATATGC 59.692 55.000 0.00 0.00 45.00 3.14
235 236 1.330521 CACCGCCGTGAAGGAAATATG 59.669 52.381 0.00 0.00 43.14 1.78
236 237 1.663695 CACCGCCGTGAAGGAAATAT 58.336 50.000 0.00 0.00 43.14 1.28
237 238 0.391927 CCACCGCCGTGAAGGAAATA 60.392 55.000 6.77 0.00 43.14 1.40
238 239 1.674322 CCACCGCCGTGAAGGAAAT 60.674 57.895 6.77 0.00 43.14 2.17
239 240 1.756408 TACCACCGCCGTGAAGGAAA 61.756 55.000 6.77 0.00 43.14 3.13
240 241 2.162338 CTACCACCGCCGTGAAGGAA 62.162 60.000 6.77 0.00 43.14 3.36
241 242 2.601067 TACCACCGCCGTGAAGGA 60.601 61.111 6.77 0.00 43.14 3.36
242 243 2.125673 CTACCACCGCCGTGAAGG 60.126 66.667 6.77 0.00 43.14 3.46
243 244 2.125673 CCTACCACCGCCGTGAAG 60.126 66.667 6.77 4.05 43.14 3.02
244 245 3.697747 CCCTACCACCGCCGTGAA 61.698 66.667 6.77 0.00 43.14 3.18
246 247 4.752879 CACCCTACCACCGCCGTG 62.753 72.222 0.00 0.00 39.91 4.94
250 251 4.091939 GTCCCACCCTACCACCGC 62.092 72.222 0.00 0.00 0.00 5.68
251 252 3.766691 CGTCCCACCCTACCACCG 61.767 72.222 0.00 0.00 0.00 4.94
252 253 3.396570 CCGTCCCACCCTACCACC 61.397 72.222 0.00 0.00 0.00 4.61
253 254 1.688187 ATCCGTCCCACCCTACCAC 60.688 63.158 0.00 0.00 0.00 4.16
254 255 1.687840 CATCCGTCCCACCCTACCA 60.688 63.158 0.00 0.00 0.00 3.25
255 256 2.440817 CCATCCGTCCCACCCTACC 61.441 68.421 0.00 0.00 0.00 3.18
256 257 2.440817 CCCATCCGTCCCACCCTAC 61.441 68.421 0.00 0.00 0.00 3.18
257 258 2.041301 CCCATCCGTCCCACCCTA 60.041 66.667 0.00 0.00 0.00 3.53
279 280 2.776072 CAGCGTTAACGGCCTTCG 59.224 61.111 27.82 2.53 45.88 3.79
280 281 2.033194 AGCAGCGTTAACGGCCTTC 61.033 57.895 27.82 12.70 40.23 3.46
281 282 2.032071 AGCAGCGTTAACGGCCTT 59.968 55.556 27.82 7.53 40.23 4.35
282 283 2.742372 CAGCAGCGTTAACGGCCT 60.742 61.111 27.82 15.29 40.23 5.19
283 284 2.740826 TCAGCAGCGTTAACGGCC 60.741 61.111 27.82 13.25 40.23 6.13
284 285 2.474712 GTCAGCAGCGTTAACGGC 59.525 61.111 27.82 22.55 40.23 5.68
285 286 2.019951 ACGTCAGCAGCGTTAACGG 61.020 57.895 27.82 14.22 39.79 4.44
286 287 1.127817 CACGTCAGCAGCGTTAACG 59.872 57.895 23.40 23.40 40.90 3.18
287 288 0.942410 TCCACGTCAGCAGCGTTAAC 60.942 55.000 0.00 0.00 40.90 2.01
288 289 0.037697 ATCCACGTCAGCAGCGTTAA 60.038 50.000 0.00 0.00 40.90 2.01
289 290 0.812549 TATCCACGTCAGCAGCGTTA 59.187 50.000 0.00 0.00 40.90 3.18
290 291 0.037697 TTATCCACGTCAGCAGCGTT 60.038 50.000 0.00 0.00 40.90 4.84
291 292 0.037697 TTTATCCACGTCAGCAGCGT 60.038 50.000 0.00 0.00 43.90 5.07
292 293 1.290203 ATTTATCCACGTCAGCAGCG 58.710 50.000 0.00 0.00 0.00 5.18
293 294 4.653806 GATATTTATCCACGTCAGCAGC 57.346 45.455 0.00 0.00 0.00 5.25
305 306 3.187700 CTGCGGCGGTAGGATATTTATC 58.812 50.000 9.78 0.00 0.00 1.75
306 307 2.565834 ACTGCGGCGGTAGGATATTTAT 59.434 45.455 13.83 0.00 0.00 1.40
307 308 1.965643 ACTGCGGCGGTAGGATATTTA 59.034 47.619 13.83 0.00 0.00 1.40
308 309 0.756903 ACTGCGGCGGTAGGATATTT 59.243 50.000 13.83 0.00 0.00 1.40
309 310 0.033504 CACTGCGGCGGTAGGATATT 59.966 55.000 15.14 0.00 0.00 1.28
310 311 1.113517 ACACTGCGGCGGTAGGATAT 61.114 55.000 15.14 0.00 0.00 1.63
311 312 1.731433 GACACTGCGGCGGTAGGATA 61.731 60.000 15.14 0.00 0.00 2.59
312 313 3.075005 ACACTGCGGCGGTAGGAT 61.075 61.111 15.14 0.00 0.00 3.24
313 314 3.755628 GACACTGCGGCGGTAGGA 61.756 66.667 15.14 0.00 0.00 2.94
314 315 4.814294 GGACACTGCGGCGGTAGG 62.814 72.222 15.14 5.91 0.00 3.18
315 316 3.989698 CTGGACACTGCGGCGGTAG 62.990 68.421 15.14 11.45 0.00 3.18
316 317 4.063967 CTGGACACTGCGGCGGTA 62.064 66.667 15.14 0.00 0.00 4.02
323 324 2.815647 GCTACCGCTGGACACTGC 60.816 66.667 1.50 0.00 38.10 4.40
324 325 1.320344 TAGGCTACCGCTGGACACTG 61.320 60.000 1.50 0.00 36.09 3.66
325 326 1.000019 TAGGCTACCGCTGGACACT 60.000 57.895 1.50 0.00 36.09 3.55
326 327 1.437986 CTAGGCTACCGCTGGACAC 59.562 63.158 1.50 0.00 36.09 3.67
327 328 1.756950 CCTAGGCTACCGCTGGACA 60.757 63.158 0.00 0.00 36.09 4.02
328 329 0.466922 TACCTAGGCTACCGCTGGAC 60.467 60.000 9.30 0.00 36.09 4.02
329 330 0.259647 TTACCTAGGCTACCGCTGGA 59.740 55.000 9.30 0.00 36.09 3.86
330 331 1.272769 GATTACCTAGGCTACCGCTGG 59.727 57.143 9.30 0.00 36.09 4.85
331 332 1.272769 GGATTACCTAGGCTACCGCTG 59.727 57.143 9.30 0.00 36.09 5.18
332 333 1.147399 AGGATTACCTAGGCTACCGCT 59.853 52.381 9.30 0.00 45.83 5.52
333 334 1.630223 AGGATTACCTAGGCTACCGC 58.370 55.000 9.30 0.00 45.83 5.68
342 343 0.540365 CCCGGCGGTAGGATTACCTA 60.540 60.000 26.32 0.00 46.05 3.08
343 344 1.835712 CCCGGCGGTAGGATTACCT 60.836 63.158 26.32 0.00 46.05 3.08
344 345 2.739132 CCCGGCGGTAGGATTACC 59.261 66.667 26.32 0.00 44.99 2.85
345 346 2.030113 GCCCGGCGGTAGGATTAC 59.970 66.667 26.32 0.00 0.00 1.89
346 347 3.236233 GGCCCGGCGGTAGGATTA 61.236 66.667 26.32 0.00 0.00 1.75
362 363 0.608035 TTTTTGCTACCGCCAGGAGG 60.608 55.000 7.89 7.89 41.02 4.30
363 364 0.804989 CTTTTTGCTACCGCCAGGAG 59.195 55.000 0.00 0.00 41.02 3.69
364 365 0.608035 CCTTTTTGCTACCGCCAGGA 60.608 55.000 0.00 0.00 41.02 3.86
365 366 1.595093 CCCTTTTTGCTACCGCCAGG 61.595 60.000 0.00 0.00 45.13 4.45
366 367 0.893727 ACCCTTTTTGCTACCGCCAG 60.894 55.000 0.00 0.00 34.43 4.85
367 368 0.891904 GACCCTTTTTGCTACCGCCA 60.892 55.000 0.00 0.00 34.43 5.69
368 369 0.891904 TGACCCTTTTTGCTACCGCC 60.892 55.000 0.00 0.00 34.43 6.13
369 370 0.955905 TTGACCCTTTTTGCTACCGC 59.044 50.000 0.00 0.00 0.00 5.68
370 371 3.005367 ACATTTGACCCTTTTTGCTACCG 59.995 43.478 0.00 0.00 0.00 4.02
371 372 4.038642 TGACATTTGACCCTTTTTGCTACC 59.961 41.667 0.00 0.00 0.00 3.18
372 373 5.195001 TGACATTTGACCCTTTTTGCTAC 57.805 39.130 0.00 0.00 0.00 3.58
373 374 5.860941 TTGACATTTGACCCTTTTTGCTA 57.139 34.783 0.00 0.00 0.00 3.49
374 375 4.751767 TTGACATTTGACCCTTTTTGCT 57.248 36.364 0.00 0.00 0.00 3.91
375 376 5.809719 TTTTGACATTTGACCCTTTTTGC 57.190 34.783 0.00 0.00 0.00 3.68
397 398 7.379059 AGATTTGACCCCTCTTTGAATTTTT 57.621 32.000 0.00 0.00 0.00 1.94
398 399 6.294731 CGAGATTTGACCCCTCTTTGAATTTT 60.295 38.462 0.00 0.00 0.00 1.82
399 400 5.183904 CGAGATTTGACCCCTCTTTGAATTT 59.816 40.000 0.00 0.00 0.00 1.82
400 401 4.702131 CGAGATTTGACCCCTCTTTGAATT 59.298 41.667 0.00 0.00 0.00 2.17
401 402 4.019321 TCGAGATTTGACCCCTCTTTGAAT 60.019 41.667 0.00 0.00 0.00 2.57
402 403 3.326588 TCGAGATTTGACCCCTCTTTGAA 59.673 43.478 0.00 0.00 0.00 2.69
403 404 2.903784 TCGAGATTTGACCCCTCTTTGA 59.096 45.455 0.00 0.00 0.00 2.69
404 405 3.334583 TCGAGATTTGACCCCTCTTTG 57.665 47.619 0.00 0.00 0.00 2.77
405 406 4.576330 AATCGAGATTTGACCCCTCTTT 57.424 40.909 0.00 0.00 0.00 2.52
406 407 4.576330 AAATCGAGATTTGACCCCTCTT 57.424 40.909 9.96 0.00 39.36 2.85
407 408 4.263506 ACAAAATCGAGATTTGACCCCTCT 60.264 41.667 24.89 5.86 40.57 3.69
408 409 4.010349 ACAAAATCGAGATTTGACCCCTC 58.990 43.478 24.89 0.00 40.57 4.30
409 410 4.034285 ACAAAATCGAGATTTGACCCCT 57.966 40.909 24.89 6.96 40.57 4.79
410 411 4.783764 AACAAAATCGAGATTTGACCCC 57.216 40.909 24.89 0.00 40.57 4.95
411 412 5.629435 GTCAAACAAAATCGAGATTTGACCC 59.371 40.000 24.89 8.19 46.95 4.46
412 413 6.675515 GTCAAACAAAATCGAGATTTGACC 57.324 37.500 24.89 11.70 46.95 4.02
414 415 6.293713 TCGTCAAACAAAATCGAGATTTGA 57.706 33.333 24.89 16.37 40.57 2.69
415 416 6.968004 TTCGTCAAACAAAATCGAGATTTG 57.032 33.333 19.36 19.36 40.57 2.32
416 417 6.636850 CCTTTCGTCAAACAAAATCGAGATTT 59.363 34.615 5.32 5.32 42.35 2.17
417 418 6.142817 CCTTTCGTCAAACAAAATCGAGATT 58.857 36.000 0.00 0.00 32.39 2.40
418 419 5.334879 CCCTTTCGTCAAACAAAATCGAGAT 60.335 40.000 0.00 0.00 32.39 2.75
419 420 4.024387 CCCTTTCGTCAAACAAAATCGAGA 60.024 41.667 0.00 0.00 32.39 4.04
420 421 4.219033 CCCTTTCGTCAAACAAAATCGAG 58.781 43.478 0.00 0.00 32.39 4.04
421 422 3.628487 ACCCTTTCGTCAAACAAAATCGA 59.372 39.130 0.00 0.00 0.00 3.59
422 423 3.959943 ACCCTTTCGTCAAACAAAATCG 58.040 40.909 0.00 0.00 0.00 3.34
423 424 4.927422 TGACCCTTTCGTCAAACAAAATC 58.073 39.130 0.00 0.00 39.78 2.17
424 425 4.993029 TGACCCTTTCGTCAAACAAAAT 57.007 36.364 0.00 0.00 39.78 1.82
425 426 4.785511 TTGACCCTTTCGTCAAACAAAA 57.214 36.364 1.81 0.00 46.92 2.44
432 433 1.666700 CGTGTTTTGACCCTTTCGTCA 59.333 47.619 0.00 0.00 40.98 4.35
433 434 1.935199 TCGTGTTTTGACCCTTTCGTC 59.065 47.619 0.00 0.00 0.00 4.20
434 435 2.027003 TCGTGTTTTGACCCTTTCGT 57.973 45.000 0.00 0.00 0.00 3.85
435 436 3.408288 TTTCGTGTTTTGACCCTTTCG 57.592 42.857 0.00 0.00 0.00 3.46
436 437 6.656314 AAAATTTCGTGTTTTGACCCTTTC 57.344 33.333 0.00 0.00 0.00 2.62
437 438 6.535865 GGTAAAATTTCGTGTTTTGACCCTTT 59.464 34.615 0.00 0.00 31.71 3.11
438 439 6.044046 GGTAAAATTTCGTGTTTTGACCCTT 58.956 36.000 0.00 0.00 31.71 3.95
439 440 5.593968 GGTAAAATTTCGTGTTTTGACCCT 58.406 37.500 0.00 0.00 31.71 4.34
440 441 4.441744 CGGTAAAATTTCGTGTTTTGACCC 59.558 41.667 0.00 4.27 31.71 4.46
441 442 4.085466 GCGGTAAAATTTCGTGTTTTGACC 60.085 41.667 0.00 0.00 31.71 4.02
442 443 4.085466 GGCGGTAAAATTTCGTGTTTTGAC 60.085 41.667 0.00 0.00 31.71 3.18
443 444 4.043073 GGCGGTAAAATTTCGTGTTTTGA 58.957 39.130 0.00 0.00 31.71 2.69
444 445 3.121629 CGGCGGTAAAATTTCGTGTTTTG 60.122 43.478 0.00 0.00 31.71 2.44
445 446 3.044286 CGGCGGTAAAATTTCGTGTTTT 58.956 40.909 0.00 0.00 33.67 2.43
446 447 2.605097 CCGGCGGTAAAATTTCGTGTTT 60.605 45.455 19.97 0.00 0.00 2.83
447 448 1.069091 CCGGCGGTAAAATTTCGTGTT 60.069 47.619 19.97 0.00 0.00 3.32
448 449 0.518195 CCGGCGGTAAAATTTCGTGT 59.482 50.000 19.97 0.00 0.00 4.49
449 450 0.179184 CCCGGCGGTAAAATTTCGTG 60.179 55.000 26.32 0.00 0.00 4.35
450 451 1.925415 GCCCGGCGGTAAAATTTCGT 61.925 55.000 26.32 0.00 0.00 3.85
451 452 1.226463 GCCCGGCGGTAAAATTTCG 60.226 57.895 26.32 6.95 0.00 3.46
452 453 4.798288 GCCCGGCGGTAAAATTTC 57.202 55.556 26.32 0.00 0.00 2.17
476 477 2.338620 CGACCACAGCGGACTCAA 59.661 61.111 0.00 0.00 38.63 3.02
477 478 2.910479 ACGACCACAGCGGACTCA 60.910 61.111 0.00 0.00 38.63 3.41
481 482 4.293648 CCACACGACCACAGCGGA 62.294 66.667 0.00 0.00 38.63 5.54
485 486 0.175760 CCCTATCCACACGACCACAG 59.824 60.000 0.00 0.00 0.00 3.66
633 638 4.821589 GGGGCTCGTGGCTTCTCG 62.822 72.222 11.00 0.00 41.46 4.04
724 736 2.597510 AGGTTTCCGTGGCCTTGC 60.598 61.111 3.32 0.00 0.00 4.01
911 927 1.202722 AGGTGTAGGTGGTTTTGGTCG 60.203 52.381 0.00 0.00 0.00 4.79
939 955 2.053244 AGAGGCTATGGATGGGAGTTG 58.947 52.381 0.00 0.00 0.00 3.16
1272 1292 3.300765 ACCCACGTGTCGTCCCTC 61.301 66.667 15.65 0.00 38.32 4.30
1565 1591 9.687210 CAATTTTCAATGTGCATACATATAGCT 57.313 29.630 0.00 0.00 46.54 3.32
1703 1760 1.246649 CTGCACCCACACATTGCTAA 58.753 50.000 0.00 0.00 37.16 3.09
1713 1770 2.978010 CCGTTCACCTGCACCCAC 60.978 66.667 0.00 0.00 0.00 4.61
2060 2122 6.816140 ACCTTTTTCTTCGAAAGCAAATCAAA 59.184 30.769 0.00 0.00 33.75 2.69
2144 2209 0.934901 CACGGTCACACTCACACTCG 60.935 60.000 0.00 0.00 0.00 4.18
2147 2212 0.102481 AGTCACGGTCACACTCACAC 59.898 55.000 0.00 0.00 0.00 3.82
2232 2299 0.511221 GTTCACATGTTCGTCGGTGG 59.489 55.000 0.00 0.00 32.29 4.61
2293 2360 5.073428 TCCATGGAGTCTAGCATGTACTAG 58.927 45.833 11.44 0.00 40.92 2.57
2294 2361 5.061721 TCCATGGAGTCTAGCATGTACTA 57.938 43.478 11.44 0.00 0.00 1.82
2296 2363 4.281941 TGATCCATGGAGTCTAGCATGTAC 59.718 45.833 21.33 0.00 0.00 2.90
2297 2364 4.482990 TGATCCATGGAGTCTAGCATGTA 58.517 43.478 21.33 0.00 0.00 2.29
2298 2365 3.311990 TGATCCATGGAGTCTAGCATGT 58.688 45.455 21.33 0.00 0.00 3.21
2299 2366 4.347360 TTGATCCATGGAGTCTAGCATG 57.653 45.455 21.33 0.00 0.00 4.06
2300 2367 4.712476 GTTTGATCCATGGAGTCTAGCAT 58.288 43.478 21.33 0.00 0.00 3.79
2303 2370 4.363999 GTCGTTTGATCCATGGAGTCTAG 58.636 47.826 21.33 9.75 0.00 2.43
2304 2371 3.132289 GGTCGTTTGATCCATGGAGTCTA 59.868 47.826 21.33 11.53 0.00 2.59
2305 2372 2.093447 GGTCGTTTGATCCATGGAGTCT 60.093 50.000 21.33 2.76 0.00 3.24
2306 2373 2.280628 GGTCGTTTGATCCATGGAGTC 58.719 52.381 21.33 16.94 0.00 3.36
2307 2374 1.405526 CGGTCGTTTGATCCATGGAGT 60.406 52.381 21.33 8.47 0.00 3.85
2308 2375 1.290203 CGGTCGTTTGATCCATGGAG 58.710 55.000 21.33 5.28 0.00 3.86
2309 2376 0.742990 GCGGTCGTTTGATCCATGGA 60.743 55.000 18.88 18.88 0.00 3.41
2310 2377 1.714899 GGCGGTCGTTTGATCCATGG 61.715 60.000 4.97 4.97 0.00 3.66
2335 2402 1.338973 GTACAGACAGGAACGTGACCA 59.661 52.381 13.28 0.00 0.00 4.02
2356 2423 4.401022 ACGAATGGCATAACATCATGGAT 58.599 39.130 0.00 0.00 0.00 3.41
2363 2430 7.990917 TGTAAATGTAACGAATGGCATAACAT 58.009 30.769 0.00 3.69 0.00 2.71
2384 2451 7.561021 TGAACAAAGCTCAAGTTGTATGTAA 57.439 32.000 2.11 0.00 36.97 2.41
2385 2452 7.561021 TTGAACAAAGCTCAAGTTGTATGTA 57.439 32.000 2.11 0.00 36.97 2.29
2386 2453 6.449635 TTGAACAAAGCTCAAGTTGTATGT 57.550 33.333 2.11 0.14 36.97 2.29
2387 2454 7.754069 TTTTGAACAAAGCTCAAGTTGTATG 57.246 32.000 2.11 0.00 36.97 2.39
2388 2455 8.947055 AATTTTGAACAAAGCTCAAGTTGTAT 57.053 26.923 2.11 0.00 36.97 2.29
2389 2456 8.770438 AAATTTTGAACAAAGCTCAAGTTGTA 57.230 26.923 2.11 0.00 36.97 2.41
2536 2607 2.479650 GCTCTTCTGCTGCTTGCG 59.520 61.111 0.00 0.00 46.63 4.85
2538 2609 1.786582 GACGCTCTTCTGCTGCTTG 59.213 57.895 0.00 0.00 0.00 4.01
2575 2646 1.619654 CTGCAGAACCCAATGGACAA 58.380 50.000 8.42 0.00 34.81 3.18
2646 2717 5.280215 GGCCTAGAGTAACATAGCATGGATT 60.280 44.000 0.00 0.00 33.60 3.01
2664 2735 3.620488 TGAAAATAACCTGCTGGCCTAG 58.380 45.455 9.95 0.34 36.63 3.02
2786 2857 4.279169 TCAATTTTGACAAGGCAAGAGGAG 59.721 41.667 0.00 0.00 31.01 3.69
2818 2889 8.880244 AGGCACATATGTACCTTGAATATCTTA 58.120 33.333 20.28 0.00 38.64 2.10
2863 2952 5.011533 CAGCTCTGCCCTGAAATATACTAGT 59.988 44.000 0.00 0.00 32.03 2.57
2864 2953 5.244851 TCAGCTCTGCCCTGAAATATACTAG 59.755 44.000 0.00 0.00 36.46 2.57
2866 2955 3.969976 TCAGCTCTGCCCTGAAATATACT 59.030 43.478 0.00 0.00 36.46 2.12
2867 2956 4.342862 TCAGCTCTGCCCTGAAATATAC 57.657 45.455 0.00 0.00 36.46 1.47
2915 3005 5.704515 AGCCATCAGTAACATAGAATCATGC 59.295 40.000 0.00 0.00 0.00 4.06
2925 3015 5.294306 CGTCAATGTAAGCCATCAGTAACAT 59.706 40.000 0.00 0.00 31.75 2.71
2931 3021 2.868583 CCTCGTCAATGTAAGCCATCAG 59.131 50.000 0.00 0.00 31.75 2.90
3038 3145 0.108138 GATGGACGAGTCTGGGTTGG 60.108 60.000 3.09 0.00 0.00 3.77
3078 3185 2.143925 GTCTTGAAAGGGGAAGACACG 58.856 52.381 0.00 0.00 45.01 4.49
3135 3242 1.599518 ACGATTCCAAGCCGCAACA 60.600 52.632 0.00 0.00 0.00 3.33
3234 3341 5.338219 GCATGGCCTAGATGTCTGATATCTT 60.338 44.000 19.88 6.85 36.38 2.40
3245 3352 1.303799 GCATCCGCATGGCCTAGATG 61.304 60.000 3.32 10.14 37.87 2.90
3259 3366 2.545526 CGGTCAATCAGTATGTGCATCC 59.454 50.000 0.00 0.00 37.40 3.51
3298 3405 1.064825 GAAGAGGGTTCTTGTCCCCA 58.935 55.000 0.00 0.00 43.63 4.96
3314 3421 2.149578 CTCTTTGGTGTCTGCCTGAAG 58.850 52.381 0.00 0.00 0.00 3.02
3404 3511 2.264813 CATTGCCTTCAATTGCTTCGG 58.735 47.619 0.00 0.00 40.74 4.30
3406 3513 3.518590 CTCCATTGCCTTCAATTGCTTC 58.481 45.455 0.00 0.00 40.74 3.86
3408 3515 1.206371 GCTCCATTGCCTTCAATTGCT 59.794 47.619 0.00 0.00 40.74 3.91
3428 3535 0.321564 TTGACATCCTTGGTGCCGAG 60.322 55.000 0.00 0.00 0.00 4.63
3437 3544 6.360618 GGATGTTCTCCTTATTGACATCCTT 58.639 40.000 20.73 0.00 45.02 3.36
3635 3742 3.272766 GTGCCAAAAGAACCTGCAC 57.727 52.632 0.00 0.00 44.53 4.57
3645 3753 1.198178 GCTCGATAAACGGTGCCAAAA 59.802 47.619 0.00 0.00 42.82 2.44
3651 3759 1.920574 CAGTCAGCTCGATAAACGGTG 59.079 52.381 0.00 0.00 42.82 4.94
3702 3810 2.370189 ACAGAAAGAAGGTCTCCACAGG 59.630 50.000 0.00 0.00 0.00 4.00
3705 3813 2.368875 TGGACAGAAAGAAGGTCTCCAC 59.631 50.000 0.00 0.00 0.00 4.02
3716 3824 8.600449 GGATACTTATCTCATTGGACAGAAAG 57.400 38.462 0.00 0.00 33.28 2.62
3757 3865 5.784578 ACCCAAAACTACAACCTCATTTC 57.215 39.130 0.00 0.00 0.00 2.17
3760 3868 5.887754 ACATACCCAAAACTACAACCTCAT 58.112 37.500 0.00 0.00 0.00 2.90
3788 3896 4.025229 TCTGTAAGCACTTTTACTGCAACG 60.025 41.667 0.00 0.00 37.08 4.10
3824 3932 3.755378 GGAATTCTTTCAGCTGAGCTTCA 59.245 43.478 17.43 0.00 36.40 3.02
3848 3956 4.843220 AATGTTGAAGCAAACCTCTCTG 57.157 40.909 0.00 0.00 0.00 3.35
3883 3991 8.986477 TCCATACTAACCGTAAGTAAAGTTTC 57.014 34.615 0.00 0.00 33.36 2.78
3890 3998 7.776969 AGTTGAGATCCATACTAACCGTAAGTA 59.223 37.037 0.00 0.00 34.11 2.24
3896 4004 5.067936 AGACAGTTGAGATCCATACTAACCG 59.932 44.000 0.00 0.00 0.00 4.44
3915 4023 5.238583 AGTGTCCCGAATTAAAGAAGACAG 58.761 41.667 0.00 0.00 33.76 3.51
3916 4024 5.223449 AGTGTCCCGAATTAAAGAAGACA 57.777 39.130 0.00 0.00 0.00 3.41
3917 4025 6.555812 AAAGTGTCCCGAATTAAAGAAGAC 57.444 37.500 0.00 0.00 0.00 3.01
3918 4026 6.016610 CCAAAAGTGTCCCGAATTAAAGAAGA 60.017 38.462 0.00 0.00 0.00 2.87
3919 4027 6.016610 TCCAAAAGTGTCCCGAATTAAAGAAG 60.017 38.462 0.00 0.00 0.00 2.85
3920 4028 5.828859 TCCAAAAGTGTCCCGAATTAAAGAA 59.171 36.000 0.00 0.00 0.00 2.52
3921 4029 5.239963 GTCCAAAAGTGTCCCGAATTAAAGA 59.760 40.000 0.00 0.00 0.00 2.52
3923 4031 4.888239 TGTCCAAAAGTGTCCCGAATTAAA 59.112 37.500 0.00 0.00 0.00 1.52
3927 4035 2.649531 TGTCCAAAAGTGTCCCGAAT 57.350 45.000 0.00 0.00 0.00 3.34
3928 4036 2.621055 CAATGTCCAAAAGTGTCCCGAA 59.379 45.455 0.00 0.00 0.00 4.30
3930 4038 1.953686 ACAATGTCCAAAAGTGTCCCG 59.046 47.619 0.00 0.00 0.00 5.14
3931 4039 4.394729 TCTACAATGTCCAAAAGTGTCCC 58.605 43.478 0.00 0.00 0.00 4.46
3932 4040 5.940470 AGATCTACAATGTCCAAAAGTGTCC 59.060 40.000 0.00 0.00 0.00 4.02
3934 4042 6.773638 AGAGATCTACAATGTCCAAAAGTGT 58.226 36.000 0.00 0.00 0.00 3.55
3935 4043 8.954950 ATAGAGATCTACAATGTCCAAAAGTG 57.045 34.615 0.00 0.00 0.00 3.16
3936 4044 8.762645 TGATAGAGATCTACAATGTCCAAAAGT 58.237 33.333 0.00 0.00 32.79 2.66
3937 4045 9.775854 ATGATAGAGATCTACAATGTCCAAAAG 57.224 33.333 0.00 0.00 32.79 2.27
3938 4046 9.551734 CATGATAGAGATCTACAATGTCCAAAA 57.448 33.333 0.00 0.00 32.79 2.44
3939 4047 8.927411 TCATGATAGAGATCTACAATGTCCAAA 58.073 33.333 0.00 0.00 32.79 3.28
3940 4048 8.482852 TCATGATAGAGATCTACAATGTCCAA 57.517 34.615 0.00 0.00 32.79 3.53
3941 4049 8.482852 TTCATGATAGAGATCTACAATGTCCA 57.517 34.615 0.00 0.00 32.79 4.02
3942 4050 9.202273 GTTTCATGATAGAGATCTACAATGTCC 57.798 37.037 0.00 0.00 32.79 4.02
3943 4051 8.910666 CGTTTCATGATAGAGATCTACAATGTC 58.089 37.037 0.00 0.00 32.79 3.06
3944 4052 8.633561 TCGTTTCATGATAGAGATCTACAATGT 58.366 33.333 0.00 0.00 32.79 2.71
3945 4053 9.127006 CTCGTTTCATGATAGAGATCTACAATG 57.873 37.037 13.97 7.05 32.79 2.82
3946 4054 8.855110 ACTCGTTTCATGATAGAGATCTACAAT 58.145 33.333 21.70 0.00 32.79 2.71
3950 4064 7.308049 CCGAACTCGTTTCATGATAGAGATCTA 60.308 40.741 21.70 0.00 37.74 1.98
4051 4165 5.193099 AGCTCATATTGTGGGTTTACCTT 57.807 39.130 0.00 0.00 41.11 3.50
4062 4176 5.052693 TGCAGGGAATTAGCTCATATTGT 57.947 39.130 0.00 0.00 0.00 2.71
4065 4179 5.509832 TGATGCAGGGAATTAGCTCATAT 57.490 39.130 0.00 0.00 0.00 1.78
4071 4201 3.696051 TCTGTTTGATGCAGGGAATTAGC 59.304 43.478 0.00 0.00 34.89 3.09
4248 4378 6.626623 GCATTCAGGGAGACTAGTAACGTTTA 60.627 42.308 5.91 0.00 0.00 2.01
4273 4403 3.558829 AGTCACAGCAATGCTTCATATCG 59.441 43.478 4.36 0.00 36.40 2.92
4313 4443 6.096987 GGTTGAGACAGTGGAGATAGTTGATA 59.903 42.308 0.00 0.00 0.00 2.15
4331 4461 3.657398 TGTACGATAGGAGGGTTGAGA 57.343 47.619 0.00 0.00 43.77 3.27
4334 4464 3.494398 CCCAATGTACGATAGGAGGGTTG 60.494 52.174 0.00 0.00 43.77 3.77
4382 4512 5.721232 ACCTTTACAGACCAGTTCTTATCG 58.279 41.667 0.00 0.00 28.96 2.92
4414 4544 7.591165 CCATTTTCGATCATGCTAAGATGAAT 58.409 34.615 0.00 0.00 35.97 2.57
4420 4550 4.534168 CAGCCATTTTCGATCATGCTAAG 58.466 43.478 0.00 0.00 0.00 2.18
4422 4552 2.291465 GCAGCCATTTTCGATCATGCTA 59.709 45.455 0.00 0.00 0.00 3.49
4423 4553 1.066605 GCAGCCATTTTCGATCATGCT 59.933 47.619 0.00 0.00 0.00 3.79
4424 4554 1.066605 AGCAGCCATTTTCGATCATGC 59.933 47.619 0.00 0.00 0.00 4.06
4425 4555 2.617308 AGAGCAGCCATTTTCGATCATG 59.383 45.455 0.00 0.00 0.00 3.07
4427 4557 2.011947 CAGAGCAGCCATTTTCGATCA 58.988 47.619 0.00 0.00 0.00 2.92
4428 4558 1.268437 GCAGAGCAGCCATTTTCGATC 60.268 52.381 0.00 0.00 0.00 3.69
4430 4560 0.321919 AGCAGAGCAGCCATTTTCGA 60.322 50.000 0.00 0.00 34.23 3.71
4433 4563 1.068055 CGAAAGCAGAGCAGCCATTTT 60.068 47.619 0.00 0.00 34.23 1.82
4435 4565 0.607489 ACGAAAGCAGAGCAGCCATT 60.607 50.000 0.00 0.00 34.23 3.16
4443 4584 7.820044 AGTAAATAAAGAGACGAAAGCAGAG 57.180 36.000 0.00 0.00 0.00 3.35
4478 4619 1.618837 GAAGTCACCTACCTGCAGTCA 59.381 52.381 13.81 0.00 0.00 3.41
4479 4620 1.402984 CGAAGTCACCTACCTGCAGTC 60.403 57.143 13.81 0.00 0.00 3.51
4483 4624 1.448013 GCCGAAGTCACCTACCTGC 60.448 63.158 0.00 0.00 0.00 4.85
4498 4639 1.401905 GCCTTAAATCTGGACAAGCCG 59.598 52.381 0.00 0.00 40.66 5.52
4574 4715 2.416893 GGCAAGTTACTAACTGAGCAGC 59.583 50.000 20.07 12.10 41.91 5.25
4622 4763 3.230134 TGGCTGCAGTTACCAGAATTTT 58.770 40.909 16.64 0.00 32.03 1.82
4646 4788 2.424956 GAGAAATTCTGGTGCCATCCAC 59.575 50.000 0.00 0.00 43.90 4.02
4655 4797 0.673644 CGCCACGGAGAAATTCTGGT 60.674 55.000 0.00 0.00 36.43 4.00
4661 4803 2.125106 GGCTCGCCACGGAGAAAT 60.125 61.111 2.41 0.00 36.08 2.17
4870 5016 2.560105 GCCTTCTGTTCTGGAAAGCAAT 59.440 45.455 0.00 0.00 32.35 3.56
4875 5021 1.073923 GGGAGCCTTCTGTTCTGGAAA 59.926 52.381 0.00 0.00 0.00 3.13
4976 5122 3.967332 AATTTTGATCAAGGTGGCTGG 57.033 42.857 8.41 0.00 0.00 4.85
5007 5153 2.804572 CGTAGGCTGAACTGATGGATGG 60.805 54.545 0.00 0.00 0.00 3.51
5015 5161 5.412526 TGTTTTAAACGTAGGCTGAACTG 57.587 39.130 0.00 0.00 0.00 3.16
5052 5198 7.757624 ACTGAAAAGAAAGCAAAATCGTGTTAA 59.242 29.630 0.00 0.00 0.00 2.01
5070 5216 2.094854 GCTGCCTTGGATCACTGAAAAG 60.095 50.000 0.00 0.00 0.00 2.27
5105 5251 4.933330 TCTTCAGCGTATCCACAATACTC 58.067 43.478 0.00 0.00 38.50 2.59
5108 5254 5.339008 ACTTCTTCAGCGTATCCACAATA 57.661 39.130 0.00 0.00 0.00 1.90
5198 5393 5.050490 TGGATTAGCTTTAATCGACAGAGC 58.950 41.667 0.00 3.82 37.33 4.09
5253 5451 2.433604 CAGCTACCCTCTCATGTGATGT 59.566 50.000 0.00 2.20 0.00 3.06
5254 5452 2.697229 TCAGCTACCCTCTCATGTGATG 59.303 50.000 0.00 0.00 0.00 3.07
5255 5453 3.037851 TCAGCTACCCTCTCATGTGAT 57.962 47.619 0.00 0.00 0.00 3.06
5256 5454 2.532250 TCAGCTACCCTCTCATGTGA 57.468 50.000 0.00 0.00 0.00 3.58
5257 5455 2.741228 GCTTCAGCTACCCTCTCATGTG 60.741 54.545 0.00 0.00 38.21 3.21
5308 5507 0.036010 ATGGTCAGGAAACGAGCCAG 60.036 55.000 0.00 0.00 32.84 4.85
5374 5573 1.056660 AACCACCTCATTGACCGTCT 58.943 50.000 0.00 0.00 0.00 4.18
5377 5576 2.985896 ACATAACCACCTCATTGACCG 58.014 47.619 0.00 0.00 0.00 4.79
5383 5582 6.603201 CAGGACATTTTACATAACCACCTCAT 59.397 38.462 0.00 0.00 0.00 2.90
5417 5616 4.507710 TGCTCAGCCAGTAGAACTATTTG 58.492 43.478 0.00 0.00 0.00 2.32
5445 5644 4.721132 TCCCATTTTTCTAAAGTGACGGT 58.279 39.130 0.00 0.00 0.00 4.83
5485 5684 5.750547 CGTAGAATCATGTGAGCAGTTATGT 59.249 40.000 0.00 0.00 0.00 2.29
5504 5703 0.899720 AATTGGGAACTCGGCGTAGA 59.100 50.000 6.85 0.00 0.00 2.59
5511 5710 4.737054 CTTTGATGGAAATTGGGAACTCG 58.263 43.478 0.00 0.00 0.00 4.18
5551 5755 6.037610 GCTCCCTGTTGTGAAGTTCATATAAG 59.962 42.308 9.18 6.92 0.00 1.73
5552 5756 5.880332 GCTCCCTGTTGTGAAGTTCATATAA 59.120 40.000 9.18 2.73 0.00 0.98
5553 5757 5.045942 TGCTCCCTGTTGTGAAGTTCATATA 60.046 40.000 9.18 0.00 0.00 0.86
5554 5758 4.263462 TGCTCCCTGTTGTGAAGTTCATAT 60.263 41.667 9.18 0.00 0.00 1.78
5555 5759 3.072330 TGCTCCCTGTTGTGAAGTTCATA 59.928 43.478 9.18 3.08 0.00 2.15
5616 5820 3.091545 TCCCCTGCTGTGAAATTCATTC 58.908 45.455 0.00 0.00 38.60 2.67
5630 5834 0.250640 CCAGTATGATGCTCCCCTGC 60.251 60.000 0.00 0.00 39.69 4.85
5685 5889 0.409484 AAACATTGGAGGGGGACTGG 59.591 55.000 0.00 0.00 0.00 4.00
5694 5898 8.764287 GTGGAATTTCTGTTAAAAACATTGGAG 58.236 33.333 0.00 0.00 41.26 3.86
5695 5899 7.713073 GGTGGAATTTCTGTTAAAAACATTGGA 59.287 33.333 0.00 0.00 41.26 3.53
5698 5902 9.625747 AATGGTGGAATTTCTGTTAAAAACATT 57.374 25.926 0.00 0.00 41.26 2.71
5699 5903 9.625747 AAATGGTGGAATTTCTGTTAAAAACAT 57.374 25.926 0.00 0.00 41.26 2.71
5706 5910 4.082463 GCCGAAATGGTGGAATTTCTGTTA 60.082 41.667 7.76 0.00 42.10 2.41
5727 5931 1.599542 GTGATATGCGTTCTCCTTGCC 59.400 52.381 0.00 0.00 0.00 4.52
5761 5965 5.821516 GGAACGATCGGTCTAGATGATAT 57.178 43.478 30.54 0.00 31.39 1.63
5784 5988 6.987992 TCCGTGATAATAGTATTTTGTCCCAC 59.012 38.462 0.00 0.00 0.00 4.61
5800 6004 3.893200 CCCATGTAGGTAGTCCGTGATAA 59.107 47.826 0.00 0.00 39.05 1.75
5871 6075 1.511850 TCTGCGAAACACTGTGGATG 58.488 50.000 13.09 0.26 0.00 3.51
5996 6200 3.266510 TGGGAGGTTCAGAATCATTCG 57.733 47.619 0.00 0.00 34.02 3.34
6091 6295 4.627058 TGACATAACCATATGCGTACTGG 58.373 43.478 0.00 10.92 42.26 4.00
6092 6296 5.289595 ACTGACATAACCATATGCGTACTG 58.710 41.667 0.00 1.88 42.26 2.74


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.