Multiple sequence alignment - TraesCS2B01G446300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G446300 chr2B 100.000 5166 0 0 1 5166 639188381 639183216 0.000000e+00 9540.0
1 TraesCS2B01G446300 chr2B 96.875 32 1 0 4476 4507 521814584 521814553 3.000000e-03 54.7
2 TraesCS2B01G446300 chr2D 91.071 2419 104 50 496 2867 537192843 537190490 0.000000e+00 3168.0
3 TraesCS2B01G446300 chr2D 93.993 1182 40 12 3277 4430 537189569 537188391 0.000000e+00 1760.0
4 TraesCS2B01G446300 chr2D 91.294 425 29 6 4614 5034 537186993 537186573 1.610000e-159 573.0
5 TraesCS2B01G446300 chr2D 92.651 381 15 1 2866 3233 537190328 537189948 2.120000e-148 536.0
6 TraesCS2B01G446300 chr2D 78.309 272 29 21 131 379 537209479 537209215 1.160000e-31 148.0
7 TraesCS2B01G446300 chr2D 82.022 89 15 1 4429 4517 540811408 540811495 2.000000e-09 75.0
8 TraesCS2B01G446300 chr2D 86.275 51 5 2 4476 4525 436494084 436494035 3.000000e-03 54.7
9 TraesCS2B01G446300 chr2A 92.822 1226 52 11 3220 4418 679849040 679847824 0.000000e+00 1744.0
10 TraesCS2B01G446300 chr2A 87.445 1593 72 40 261 1815 679851982 679850480 0.000000e+00 1716.0
11 TraesCS2B01G446300 chr2A 81.374 655 67 21 2542 3164 679849673 679849042 2.800000e-132 483.0
12 TraesCS2B01G446300 chr2A 90.358 363 23 7 4614 4972 679847133 679846779 2.820000e-127 466.0
13 TraesCS2B01G446300 chr2A 89.315 365 23 7 2139 2499 679850029 679849677 1.320000e-120 444.0
14 TraesCS2B01G446300 chr2A 90.686 204 14 4 4963 5166 679844035 679843837 3.070000e-67 267.0
15 TraesCS2B01G446300 chr2A 86.166 253 13 7 1892 2144 679850483 679850253 2.390000e-63 254.0
16 TraesCS2B01G446300 chr4A 94.535 1043 36 11 221 1243 730249539 730248498 0.000000e+00 1591.0
17 TraesCS2B01G446300 chr4A 86.962 859 97 9 3322 4171 599621058 599621910 0.000000e+00 952.0
18 TraesCS2B01G446300 chr4A 84.116 447 44 8 1033 1479 599620421 599620840 1.730000e-109 407.0
19 TraesCS2B01G446300 chr4A 97.059 34 0 1 4429 4462 706558981 706558949 7.230000e-04 56.5
20 TraesCS2B01G446300 chrUn 86.962 859 97 9 3322 4171 297324973 297324121 0.000000e+00 952.0
21 TraesCS2B01G446300 chrUn 84.396 455 47 7 1025 1479 241846742 241846312 4.780000e-115 425.0
22 TraesCS2B01G446300 chrUn 84.116 447 44 8 1033 1479 297325610 297325191 1.730000e-109 407.0
23 TraesCS2B01G446300 chr6B 89.024 82 9 0 4422 4503 610024719 610024800 9.150000e-18 102.0
24 TraesCS2B01G446300 chr1B 88.235 85 10 0 4429 4513 528405101 528405017 9.150000e-18 102.0
25 TraesCS2B01G446300 chr1B 87.356 87 11 0 4427 4513 510601184 510601098 3.290000e-17 100.0
26 TraesCS2B01G446300 chr1B 87.838 74 8 1 4431 4503 352627724 352627651 9.220000e-13 86.1
27 TraesCS2B01G446300 chr4B 89.474 76 7 1 4428 4503 86097709 86097783 1.530000e-15 95.3
28 TraesCS2B01G446300 chr4B 85.366 82 12 0 4429 4510 662925358 662925277 9.220000e-13 86.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G446300 chr2B 639183216 639188381 5165 True 9540.000000 9540 100.000000 1 5166 1 chr2B.!!$R2 5165
1 TraesCS2B01G446300 chr2D 537186573 537192843 6270 True 1509.250000 3168 92.252250 496 5034 4 chr2D.!!$R3 4538
2 TraesCS2B01G446300 chr2A 679843837 679851982 8145 True 767.714286 1744 88.309429 261 5166 7 chr2A.!!$R1 4905
3 TraesCS2B01G446300 chr4A 730248498 730249539 1041 True 1591.000000 1591 94.535000 221 1243 1 chr4A.!!$R2 1022
4 TraesCS2B01G446300 chr4A 599620421 599621910 1489 False 679.500000 952 85.539000 1033 4171 2 chr4A.!!$F1 3138
5 TraesCS2B01G446300 chrUn 297324121 297325610 1489 True 679.500000 952 85.539000 1033 4171 2 chrUn.!!$R2 3138

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
214 215 0.097674 CTCGTACCCGTTCCGTGTAG 59.902 60.0 0.0 0.00 35.01 2.74 F
217 218 0.733909 GTACCCGTTCCGTGTAGCAC 60.734 60.0 0.0 0.00 0.00 4.40 F
218 219 0.895100 TACCCGTTCCGTGTAGCACT 60.895 55.0 0.0 0.00 31.34 4.40 F
1927 2014 0.938008 CCCCGCTCTTCTTAAATCGC 59.062 55.0 0.0 0.00 0.00 4.58 F
2272 2587 1.051008 TCTGCCTCTGCTGAGACAAA 58.949 50.0 21.1 0.05 42.73 2.83 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1951 2038 0.829990 TGCTTCGCATGATCCCTGTA 59.170 50.000 0.00 0.0 31.71 2.74 R
2008 2095 1.152902 ATCATGCACATCGGTGGGG 60.153 57.895 0.00 0.0 45.38 4.96 R
2178 2493 3.243501 GGGCGCAATGAATGATGTATTGT 60.244 43.478 10.83 0.0 34.98 2.71 R
3024 3587 0.531974 TGTTGGGTCGTCTTCAGTGC 60.532 55.000 0.00 0.0 0.00 4.40 R
4264 5190 0.759959 ATTCGTACCCCACACACACA 59.240 50.000 0.00 0.0 0.00 3.72 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 8.939201 TTTGTAAGCATTCAGATTTTTGTCAA 57.061 26.923 0.00 0.00 0.00 3.18
26 27 9.545105 TTTGTAAGCATTCAGATTTTTGTCAAT 57.455 25.926 0.00 0.00 0.00 2.57
27 28 8.523523 TGTAAGCATTCAGATTTTTGTCAATG 57.476 30.769 0.00 0.00 0.00 2.82
28 29 8.143193 TGTAAGCATTCAGATTTTTGTCAATGT 58.857 29.630 0.00 0.00 0.00 2.71
29 30 8.981647 GTAAGCATTCAGATTTTTGTCAATGTT 58.018 29.630 0.00 0.00 0.00 2.71
30 31 8.441312 AAGCATTCAGATTTTTGTCAATGTTT 57.559 26.923 0.00 0.00 0.00 2.83
31 32 7.857569 AGCATTCAGATTTTTGTCAATGTTTG 58.142 30.769 0.00 0.00 0.00 2.93
32 33 6.575942 GCATTCAGATTTTTGTCAATGTTTGC 59.424 34.615 0.00 0.00 0.00 3.68
33 34 7.631822 CATTCAGATTTTTGTCAATGTTTGCA 58.368 30.769 0.00 0.00 0.00 4.08
34 35 6.586868 TCAGATTTTTGTCAATGTTTGCAC 57.413 33.333 0.00 0.00 0.00 4.57
35 36 6.104665 TCAGATTTTTGTCAATGTTTGCACA 58.895 32.000 0.00 0.00 37.31 4.57
36 37 6.592994 TCAGATTTTTGTCAATGTTTGCACAA 59.407 30.769 0.00 0.00 36.16 3.33
37 38 7.118825 TCAGATTTTTGTCAATGTTTGCACAAA 59.881 29.630 0.00 10.86 38.09 2.83
38 39 7.749570 CAGATTTTTGTCAATGTTTGCACAAAA 59.250 29.630 17.11 17.11 42.19 2.44
94 95 8.675705 TTTTCAGAGTTTACTGTTCATCATGA 57.324 30.769 0.00 0.00 38.79 3.07
95 96 7.895975 TTCAGAGTTTACTGTTCATCATGAG 57.104 36.000 0.09 0.00 38.79 2.90
96 97 6.997655 TCAGAGTTTACTGTTCATCATGAGT 58.002 36.000 0.09 0.00 38.79 3.41
97 98 7.445121 TCAGAGTTTACTGTTCATCATGAGTT 58.555 34.615 0.09 0.00 38.79 3.01
98 99 7.600375 TCAGAGTTTACTGTTCATCATGAGTTC 59.400 37.037 0.09 0.00 38.79 3.01
99 100 7.386025 CAGAGTTTACTGTTCATCATGAGTTCA 59.614 37.037 0.09 0.00 33.73 3.18
100 101 7.933577 AGAGTTTACTGTTCATCATGAGTTCAA 59.066 33.333 0.09 0.00 0.00 2.69
101 102 8.450578 AGTTTACTGTTCATCATGAGTTCAAA 57.549 30.769 0.09 0.00 0.00 2.69
102 103 9.071276 AGTTTACTGTTCATCATGAGTTCAAAT 57.929 29.630 0.09 0.00 0.00 2.32
103 104 9.121517 GTTTACTGTTCATCATGAGTTCAAATG 57.878 33.333 0.09 0.00 0.00 2.32
104 105 8.620116 TTACTGTTCATCATGAGTTCAAATGA 57.380 30.769 0.09 0.00 37.23 2.57
105 106 7.142306 ACTGTTCATCATGAGTTCAAATGAG 57.858 36.000 0.09 0.00 36.31 2.90
106 107 6.713903 ACTGTTCATCATGAGTTCAAATGAGT 59.286 34.615 0.09 0.00 36.31 3.41
107 108 7.230108 ACTGTTCATCATGAGTTCAAATGAGTT 59.770 33.333 0.09 0.00 36.31 3.01
108 109 7.587629 TGTTCATCATGAGTTCAAATGAGTTC 58.412 34.615 0.09 0.00 36.31 3.01
109 110 6.413018 TCATCATGAGTTCAAATGAGTTCG 57.587 37.500 0.09 0.00 36.31 3.95
110 111 4.668576 TCATGAGTTCAAATGAGTTCGC 57.331 40.909 0.00 0.00 0.00 4.70
111 112 4.064388 TCATGAGTTCAAATGAGTTCGCA 58.936 39.130 0.00 0.00 0.00 5.10
112 113 4.514816 TCATGAGTTCAAATGAGTTCGCAA 59.485 37.500 0.00 0.00 0.00 4.85
113 114 4.472691 TGAGTTCAAATGAGTTCGCAAG 57.527 40.909 0.00 0.00 0.00 4.01
114 115 3.229552 GAGTTCAAATGAGTTCGCAAGC 58.770 45.455 0.00 0.00 37.18 4.01
115 116 2.618241 AGTTCAAATGAGTTCGCAAGCA 59.382 40.909 0.00 0.00 37.18 3.91
116 117 2.975410 TCAAATGAGTTCGCAAGCAG 57.025 45.000 0.00 0.00 37.18 4.24
117 118 2.493035 TCAAATGAGTTCGCAAGCAGA 58.507 42.857 0.00 0.00 37.18 4.26
118 119 2.224079 TCAAATGAGTTCGCAAGCAGAC 59.776 45.455 0.00 0.00 37.18 3.51
119 120 2.175878 AATGAGTTCGCAAGCAGACT 57.824 45.000 0.00 0.00 37.18 3.24
120 121 3.319137 AATGAGTTCGCAAGCAGACTA 57.681 42.857 0.00 0.00 37.18 2.59
121 122 3.533606 ATGAGTTCGCAAGCAGACTAT 57.466 42.857 0.00 0.00 37.18 2.12
122 123 2.610433 TGAGTTCGCAAGCAGACTATG 58.390 47.619 0.00 0.00 37.18 2.23
123 124 2.231235 TGAGTTCGCAAGCAGACTATGA 59.769 45.455 0.00 0.00 37.18 2.15
124 125 2.600867 GAGTTCGCAAGCAGACTATGAC 59.399 50.000 0.00 0.00 37.18 3.06
125 126 2.232452 AGTTCGCAAGCAGACTATGACT 59.768 45.455 0.00 0.00 37.18 3.41
126 127 2.996621 GTTCGCAAGCAGACTATGACTT 59.003 45.455 0.00 0.00 37.18 3.01
127 128 3.319137 TCGCAAGCAGACTATGACTTT 57.681 42.857 0.00 0.00 37.18 2.66
128 129 3.664107 TCGCAAGCAGACTATGACTTTT 58.336 40.909 0.00 0.00 37.18 2.27
129 130 3.433274 TCGCAAGCAGACTATGACTTTTG 59.567 43.478 0.00 0.00 37.18 2.44
130 131 3.187227 CGCAAGCAGACTATGACTTTTGT 59.813 43.478 0.00 0.00 0.00 2.83
131 132 4.319766 CGCAAGCAGACTATGACTTTTGTT 60.320 41.667 0.00 0.00 0.00 2.83
132 133 5.107104 CGCAAGCAGACTATGACTTTTGTTA 60.107 40.000 0.00 0.00 0.00 2.41
133 134 6.565811 CGCAAGCAGACTATGACTTTTGTTAA 60.566 38.462 0.00 0.00 0.00 2.01
134 135 7.138736 GCAAGCAGACTATGACTTTTGTTAAA 58.861 34.615 0.00 0.00 0.00 1.52
135 136 7.647715 GCAAGCAGACTATGACTTTTGTTAAAA 59.352 33.333 0.00 0.00 0.00 1.52
136 137 9.515020 CAAGCAGACTATGACTTTTGTTAAAAA 57.485 29.630 0.00 0.00 34.17 1.94
152 153 2.595124 AAAAAGGTTTCTTGGCACCG 57.405 45.000 0.00 0.00 38.21 4.94
153 154 0.104120 AAAAGGTTTCTTGGCACCGC 59.896 50.000 0.00 0.00 38.21 5.68
163 164 4.564110 GGCACCGCCCCATAGGAC 62.564 72.222 0.00 0.00 44.06 3.85
164 165 3.480133 GCACCGCCCCATAGGACT 61.480 66.667 0.00 0.00 38.24 3.85
165 166 2.505982 CACCGCCCCATAGGACTG 59.494 66.667 0.00 0.00 38.24 3.51
166 167 2.040606 ACCGCCCCATAGGACTGT 59.959 61.111 0.00 0.00 38.24 3.55
167 168 2.064581 ACCGCCCCATAGGACTGTC 61.065 63.158 0.00 0.00 38.24 3.51
168 169 2.417516 CGCCCCATAGGACTGTCG 59.582 66.667 1.07 0.00 38.24 4.35
169 170 2.109181 GCCCCATAGGACTGTCGC 59.891 66.667 1.07 0.00 38.24 5.19
170 171 2.435693 GCCCCATAGGACTGTCGCT 61.436 63.158 1.07 3.16 38.24 4.93
171 172 1.972660 GCCCCATAGGACTGTCGCTT 61.973 60.000 1.07 0.00 38.24 4.68
172 173 0.541863 CCCCATAGGACTGTCGCTTT 59.458 55.000 1.07 0.00 38.24 3.51
173 174 1.065418 CCCCATAGGACTGTCGCTTTT 60.065 52.381 1.07 0.00 38.24 2.27
174 175 2.009774 CCCATAGGACTGTCGCTTTTG 58.990 52.381 1.07 2.92 33.47 2.44
175 176 2.615493 CCCATAGGACTGTCGCTTTTGT 60.615 50.000 1.07 0.00 33.47 2.83
176 177 3.369052 CCCATAGGACTGTCGCTTTTGTA 60.369 47.826 1.07 0.00 33.47 2.41
177 178 3.865745 CCATAGGACTGTCGCTTTTGTAG 59.134 47.826 1.07 0.00 0.00 2.74
178 179 2.457366 AGGACTGTCGCTTTTGTAGG 57.543 50.000 1.07 0.00 0.00 3.18
179 180 1.002087 AGGACTGTCGCTTTTGTAGGG 59.998 52.381 1.07 0.00 38.13 3.53
180 181 1.270678 GGACTGTCGCTTTTGTAGGGT 60.271 52.381 1.07 0.00 37.99 4.34
181 182 2.067013 GACTGTCGCTTTTGTAGGGTC 58.933 52.381 0.00 0.00 37.99 4.46
182 183 1.414919 ACTGTCGCTTTTGTAGGGTCA 59.585 47.619 0.00 0.00 37.99 4.02
183 184 1.798813 CTGTCGCTTTTGTAGGGTCAC 59.201 52.381 0.00 0.00 37.99 3.67
184 185 0.788391 GTCGCTTTTGTAGGGTCACG 59.212 55.000 0.00 0.00 37.99 4.35
185 186 0.390124 TCGCTTTTGTAGGGTCACGT 59.610 50.000 0.00 0.00 37.99 4.49
186 187 1.202557 TCGCTTTTGTAGGGTCACGTT 60.203 47.619 0.00 0.00 37.99 3.99
187 188 1.070175 CGCTTTTGTAGGGTCACGTTG 60.070 52.381 0.00 0.00 32.41 4.10
188 189 2.215196 GCTTTTGTAGGGTCACGTTGA 58.785 47.619 0.00 0.00 0.00 3.18
189 190 2.614983 GCTTTTGTAGGGTCACGTTGAA 59.385 45.455 0.00 0.00 0.00 2.69
190 191 3.547413 GCTTTTGTAGGGTCACGTTGAAC 60.547 47.826 0.00 0.00 32.07 3.18
191 192 3.547054 TTTGTAGGGTCACGTTGAACT 57.453 42.857 0.00 0.00 33.75 3.01
192 193 3.547054 TTGTAGGGTCACGTTGAACTT 57.453 42.857 0.00 0.00 33.75 2.66
193 194 3.547054 TGTAGGGTCACGTTGAACTTT 57.453 42.857 0.00 0.00 33.75 2.66
194 195 4.669206 TGTAGGGTCACGTTGAACTTTA 57.331 40.909 0.00 0.00 33.75 1.85
195 196 4.370917 TGTAGGGTCACGTTGAACTTTAC 58.629 43.478 0.00 0.00 33.75 2.01
196 197 3.832615 AGGGTCACGTTGAACTTTACT 57.167 42.857 0.00 0.00 33.75 2.24
197 198 3.725490 AGGGTCACGTTGAACTTTACTC 58.275 45.455 0.00 0.00 33.75 2.59
198 199 2.473984 GGGTCACGTTGAACTTTACTCG 59.526 50.000 0.00 0.00 33.75 4.18
199 200 3.118542 GGTCACGTTGAACTTTACTCGT 58.881 45.455 0.00 0.00 29.71 4.18
200 201 4.290155 GGTCACGTTGAACTTTACTCGTA 58.710 43.478 0.00 0.00 29.71 3.43
201 202 4.147133 GGTCACGTTGAACTTTACTCGTAC 59.853 45.833 0.00 0.00 29.71 3.67
202 203 4.147133 GTCACGTTGAACTTTACTCGTACC 59.853 45.833 0.00 0.00 0.00 3.34
203 204 3.426525 CACGTTGAACTTTACTCGTACCC 59.573 47.826 0.00 0.00 0.00 3.69
204 205 2.658325 CGTTGAACTTTACTCGTACCCG 59.342 50.000 0.00 0.00 0.00 5.28
205 206 3.642705 GTTGAACTTTACTCGTACCCGT 58.357 45.455 0.00 0.00 35.01 5.28
206 207 4.051237 GTTGAACTTTACTCGTACCCGTT 58.949 43.478 0.00 0.00 35.01 4.44
207 208 3.900941 TGAACTTTACTCGTACCCGTTC 58.099 45.455 0.00 0.00 35.01 3.95
208 209 3.245797 GAACTTTACTCGTACCCGTTCC 58.754 50.000 0.00 0.00 35.01 3.62
209 210 1.200020 ACTTTACTCGTACCCGTTCCG 59.800 52.381 0.00 0.00 35.01 4.30
210 211 1.200020 CTTTACTCGTACCCGTTCCGT 59.800 52.381 0.00 0.00 35.01 4.69
211 212 0.521291 TTACTCGTACCCGTTCCGTG 59.479 55.000 0.00 0.00 35.01 4.94
212 213 0.605319 TACTCGTACCCGTTCCGTGT 60.605 55.000 0.00 0.00 35.01 4.49
213 214 0.605319 ACTCGTACCCGTTCCGTGTA 60.605 55.000 0.00 0.00 35.01 2.90
214 215 0.097674 CTCGTACCCGTTCCGTGTAG 59.902 60.000 0.00 0.00 35.01 2.74
215 216 1.514873 CGTACCCGTTCCGTGTAGC 60.515 63.158 0.00 0.00 0.00 3.58
216 217 1.586028 GTACCCGTTCCGTGTAGCA 59.414 57.895 0.00 0.00 0.00 3.49
217 218 0.733909 GTACCCGTTCCGTGTAGCAC 60.734 60.000 0.00 0.00 0.00 4.40
218 219 0.895100 TACCCGTTCCGTGTAGCACT 60.895 55.000 0.00 0.00 31.34 4.40
219 220 0.895100 ACCCGTTCCGTGTAGCACTA 60.895 55.000 0.00 0.00 31.34 2.74
236 237 4.948621 AGCACTAGTACTACCTTGGTACAG 59.051 45.833 0.00 0.00 42.39 2.74
494 514 1.287425 GTGGAACCGAATCCGATGTC 58.713 55.000 2.59 0.00 42.76 3.06
606 627 1.312371 ACAGCCACGCAAAACAGTGT 61.312 50.000 0.00 0.00 36.69 3.55
1296 1362 3.386237 GAGCAGGAGGCCTCACGT 61.386 66.667 33.29 15.12 46.50 4.49
1472 1538 2.230508 TGCTCTACGTCCAGGTAAACAG 59.769 50.000 0.00 0.00 0.00 3.16
1531 1605 8.742777 CAATCATACCCCGATAATGAAATGAAT 58.257 33.333 0.00 0.00 33.60 2.57
1532 1606 9.973661 AATCATACCCCGATAATGAAATGAATA 57.026 29.630 0.00 0.00 33.60 1.75
1533 1607 9.618890 ATCATACCCCGATAATGAAATGAATAG 57.381 33.333 0.00 0.00 33.60 1.73
1534 1608 8.602424 TCATACCCCGATAATGAAATGAATAGT 58.398 33.333 0.00 0.00 0.00 2.12
1569 1645 3.056678 TCGATTAAACAACTACTCGGCCA 60.057 43.478 2.24 0.00 0.00 5.36
1622 1706 7.517417 GCGAGGATTGTTGACATTGTAGATAAG 60.517 40.741 0.00 0.00 0.00 1.73
1654 1739 5.923733 ACTTTTACCAGAGATCGATCTGT 57.076 39.130 31.88 25.27 44.35 3.41
1655 1740 6.287589 ACTTTTACCAGAGATCGATCTGTT 57.712 37.500 31.88 16.31 44.35 3.16
1779 1866 6.763715 AATTATGCTAGAACTGGGTATGGA 57.236 37.500 0.00 0.00 0.00 3.41
1822 1909 3.064324 GCCCGGCTGATGTTGCTT 61.064 61.111 0.71 0.00 0.00 3.91
1843 1930 2.642311 TGGACTGGGAGCAAACTGATTA 59.358 45.455 0.00 0.00 0.00 1.75
1844 1931 3.010420 GGACTGGGAGCAAACTGATTAC 58.990 50.000 0.00 0.00 0.00 1.89
1896 1983 2.168496 TCTAGTTCGTGGGGACTGAAG 58.832 52.381 0.00 0.00 0.00 3.02
1927 2014 0.938008 CCCCGCTCTTCTTAAATCGC 59.062 55.000 0.00 0.00 0.00 4.58
1951 2038 6.922957 GCTAGTAGAGTGTAGTAGTACGATGT 59.077 42.308 10.10 0.00 30.95 3.06
2034 2121 3.562973 ACCGATGTGCATGATCAGAATTC 59.437 43.478 0.09 0.00 0.00 2.17
2121 2208 4.037923 AGACGAGAAAATTTTGGCATGTGT 59.962 37.500 8.47 0.00 0.00 3.72
2122 2209 4.050553 ACGAGAAAATTTTGGCATGTGTG 58.949 39.130 8.47 0.00 0.00 3.82
2176 2491 6.122850 TGCAGATCATGTGCATTTTACTAC 57.877 37.500 5.11 0.00 45.96 2.73
2177 2492 5.882000 TGCAGATCATGTGCATTTTACTACT 59.118 36.000 5.11 0.00 45.96 2.57
2178 2493 7.047271 TGCAGATCATGTGCATTTTACTACTA 58.953 34.615 5.11 0.00 45.96 1.82
2219 2534 3.343326 TACCGGGGCCTGCCAATT 61.343 61.111 6.91 0.00 37.98 2.32
2231 2546 3.501396 CCAATTGGCATCGTCGCT 58.499 55.556 12.53 0.00 0.00 4.93
2232 2547 2.689083 CCAATTGGCATCGTCGCTA 58.311 52.632 12.53 0.00 0.00 4.26
2235 2550 2.469826 CAATTGGCATCGTCGCTACTA 58.530 47.619 0.00 0.00 0.00 1.82
2272 2587 1.051008 TCTGCCTCTGCTGAGACAAA 58.949 50.000 21.10 0.05 42.73 2.83
2392 2708 8.038944 CCAACATCTCTTGAATTGAATTCCAAT 58.961 33.333 14.73 0.48 46.86 3.16
2406 2722 9.953565 ATTGAATTCCAATCAAAACATCAATCT 57.046 25.926 2.27 0.00 41.42 2.40
2462 2782 4.747108 CAGCTGAATTTGATCCTACTACCG 59.253 45.833 8.42 0.00 0.00 4.02
2505 2836 3.343617 CGGTGAAAACCATGTACTCCAT 58.656 45.455 0.00 0.00 0.00 3.41
2534 2866 5.984725 TCGCAAATAGAAGTTTATCCTGGA 58.015 37.500 0.00 0.00 0.00 3.86
2550 2882 4.605183 TCCTGGACAAAAGGAAGTTTCAA 58.395 39.130 0.00 0.00 40.95 2.69
2551 2883 5.208121 TCCTGGACAAAAGGAAGTTTCAAT 58.792 37.500 0.00 0.00 40.95 2.57
2611 2946 7.011389 TGGCTCTCTGTTGACATATAAAATTCG 59.989 37.037 0.00 0.00 0.00 3.34
2867 3398 1.279271 CAGTTCCCACTTCCCACCTAG 59.721 57.143 0.00 0.00 0.00 3.02
2868 3399 1.132495 AGTTCCCACTTCCCACCTAGT 60.132 52.381 0.00 0.00 0.00 2.57
2869 3400 1.703513 GTTCCCACTTCCCACCTAGTT 59.296 52.381 0.00 0.00 0.00 2.24
2870 3401 2.107726 GTTCCCACTTCCCACCTAGTTT 59.892 50.000 0.00 0.00 0.00 2.66
2871 3402 2.424793 TCCCACTTCCCACCTAGTTTT 58.575 47.619 0.00 0.00 0.00 2.43
2872 3403 2.374170 TCCCACTTCCCACCTAGTTTTC 59.626 50.000 0.00 0.00 0.00 2.29
2873 3404 2.107552 CCCACTTCCCACCTAGTTTTCA 59.892 50.000 0.00 0.00 0.00 2.69
2874 3405 3.245264 CCCACTTCCCACCTAGTTTTCAT 60.245 47.826 0.00 0.00 0.00 2.57
2875 3406 4.407365 CCACTTCCCACCTAGTTTTCATT 58.593 43.478 0.00 0.00 0.00 2.57
2876 3407 4.218417 CCACTTCCCACCTAGTTTTCATTG 59.782 45.833 0.00 0.00 0.00 2.82
2877 3408 4.827284 CACTTCCCACCTAGTTTTCATTGT 59.173 41.667 0.00 0.00 0.00 2.71
2878 3409 6.001460 CACTTCCCACCTAGTTTTCATTGTA 58.999 40.000 0.00 0.00 0.00 2.41
2879 3410 6.488683 CACTTCCCACCTAGTTTTCATTGTAA 59.511 38.462 0.00 0.00 0.00 2.41
2880 3411 6.489022 ACTTCCCACCTAGTTTTCATTGTAAC 59.511 38.462 0.00 0.00 0.00 2.50
2881 3412 6.195600 TCCCACCTAGTTTTCATTGTAACT 57.804 37.500 10.29 10.29 38.16 2.24
2882 3413 6.607019 TCCCACCTAGTTTTCATTGTAACTT 58.393 36.000 10.57 0.00 36.16 2.66
2883 3414 6.488683 TCCCACCTAGTTTTCATTGTAACTTG 59.511 38.462 10.57 9.18 36.16 3.16
2884 3415 6.294508 CCCACCTAGTTTTCATTGTAACTTGG 60.295 42.308 20.91 20.91 46.14 3.61
2888 3419 8.797266 CCTAGTTTTCATTGTAACTTGGTTTC 57.203 34.615 17.57 0.00 40.26 2.78
2889 3420 7.865889 CCTAGTTTTCATTGTAACTTGGTTTCC 59.134 37.037 17.57 0.00 40.26 3.13
2890 3421 7.176589 AGTTTTCATTGTAACTTGGTTTCCA 57.823 32.000 0.00 0.00 30.72 3.53
2891 3422 7.039270 AGTTTTCATTGTAACTTGGTTTCCAC 58.961 34.615 0.00 0.00 30.72 4.02
2892 3423 6.783708 TTTCATTGTAACTTGGTTTCCACT 57.216 33.333 0.00 0.00 30.78 4.00
3135 3704 0.179140 CATTGCCGGTGGTGCATTAC 60.179 55.000 1.90 0.00 38.76 1.89
3148 3717 6.238621 GGTGGTGCATTACGAATTTATGATCA 60.239 38.462 0.00 0.00 0.00 2.92
3215 3784 0.179169 GCCAAGTCGTCCGTCTAGTC 60.179 60.000 0.00 0.00 0.00 2.59
3216 3785 0.450983 CCAAGTCGTCCGTCTAGTCC 59.549 60.000 0.00 0.00 0.00 3.85
3235 3804 1.581447 CGGTCCCAAGCTTTGCTTC 59.419 57.895 0.00 0.00 46.77 3.86
3246 3815 0.316204 CTTTGCTTCCTTGGCCTGTG 59.684 55.000 3.32 0.00 0.00 3.66
3263 3832 5.009610 GGCCTGTGTTAAACTTGAATCTTGA 59.990 40.000 0.00 0.00 0.00 3.02
3270 3839 9.813080 GTGTTAAACTTGAATCTTGATCTGTAC 57.187 33.333 0.00 0.00 0.00 2.90
3275 3844 9.950496 AAACTTGAATCTTGATCTGTACAGTAT 57.050 29.630 21.99 13.92 0.00 2.12
3346 4259 0.514691 GAGCTTCGCAGGTCACAAAG 59.485 55.000 9.43 0.00 45.52 2.77
3427 4340 1.741770 GGCGACGACCTGCTTCAAT 60.742 57.895 0.00 0.00 0.00 2.57
3883 4802 1.445582 GGCCAAGAACGTCGTCGAT 60.446 57.895 9.47 0.00 40.62 3.59
4202 5128 4.458295 TGGTTTTCAGTTGGTTACGTTTGA 59.542 37.500 0.00 0.00 0.00 2.69
4204 5130 6.037726 GGTTTTCAGTTGGTTACGTTTGATT 58.962 36.000 0.00 0.00 0.00 2.57
4206 5132 4.217754 TCAGTTGGTTACGTTTGATTGC 57.782 40.909 0.00 0.00 0.00 3.56
4239 5165 5.417580 GTGATTTGCTGGGGTTATTTCAGTA 59.582 40.000 0.00 0.00 0.00 2.74
4256 5182 1.145156 TAATCGATGCGGGTGTGGG 59.855 57.895 0.00 0.00 0.00 4.61
4261 5187 4.344865 ATGCGGGTGTGGGGTGAC 62.345 66.667 0.00 0.00 0.00 3.67
4264 5190 3.556306 CGGGTGTGGGGTGACTGT 61.556 66.667 0.00 0.00 0.00 3.55
4265 5191 2.113139 GGGTGTGGGGTGACTGTG 59.887 66.667 0.00 0.00 0.00 3.66
4274 5200 1.095228 GGGTGACTGTGTGTGTGTGG 61.095 60.000 0.00 0.00 0.00 4.17
4332 5271 5.395103 GCAAAATGTACCCAGGATTGCAATA 60.395 40.000 12.97 0.00 37.33 1.90
4427 5366 5.047847 TGATACGCATAAGCCTCTAACAAC 58.952 41.667 0.00 0.00 37.52 3.32
4428 5367 3.611766 ACGCATAAGCCTCTAACAACT 57.388 42.857 0.00 0.00 37.52 3.16
4429 5368 4.730949 ACGCATAAGCCTCTAACAACTA 57.269 40.909 0.00 0.00 37.52 2.24
4430 5369 4.430908 ACGCATAAGCCTCTAACAACTAC 58.569 43.478 0.00 0.00 37.52 2.73
4431 5370 4.159879 ACGCATAAGCCTCTAACAACTACT 59.840 41.667 0.00 0.00 37.52 2.57
4432 5371 4.740695 CGCATAAGCCTCTAACAACTACTC 59.259 45.833 0.00 0.00 37.52 2.59
4433 5372 5.051153 GCATAAGCCTCTAACAACTACTCC 58.949 45.833 0.00 0.00 33.58 3.85
4434 5373 5.163395 GCATAAGCCTCTAACAACTACTCCT 60.163 44.000 0.00 0.00 33.58 3.69
4435 5374 6.630638 GCATAAGCCTCTAACAACTACTCCTT 60.631 42.308 0.00 0.00 33.58 3.36
4436 5375 5.408880 AAGCCTCTAACAACTACTCCTTC 57.591 43.478 0.00 0.00 0.00 3.46
4437 5376 3.770388 AGCCTCTAACAACTACTCCTTCC 59.230 47.826 0.00 0.00 0.00 3.46
4438 5377 3.514309 GCCTCTAACAACTACTCCTTCCA 59.486 47.826 0.00 0.00 0.00 3.53
4439 5378 4.162509 GCCTCTAACAACTACTCCTTCCAT 59.837 45.833 0.00 0.00 0.00 3.41
4440 5379 5.682730 GCCTCTAACAACTACTCCTTCCATC 60.683 48.000 0.00 0.00 0.00 3.51
4441 5380 5.659079 CCTCTAACAACTACTCCTTCCATCT 59.341 44.000 0.00 0.00 0.00 2.90
4442 5381 6.183360 CCTCTAACAACTACTCCTTCCATCTC 60.183 46.154 0.00 0.00 0.00 2.75
4443 5382 6.253758 TCTAACAACTACTCCTTCCATCTCA 58.746 40.000 0.00 0.00 0.00 3.27
4444 5383 6.897966 TCTAACAACTACTCCTTCCATCTCAT 59.102 38.462 0.00 0.00 0.00 2.90
4445 5384 8.059461 TCTAACAACTACTCCTTCCATCTCATA 58.941 37.037 0.00 0.00 0.00 2.15
4446 5385 7.496346 AACAACTACTCCTTCCATCTCATAA 57.504 36.000 0.00 0.00 0.00 1.90
4447 5386 7.682787 ACAACTACTCCTTCCATCTCATAAT 57.317 36.000 0.00 0.00 0.00 1.28
4448 5387 7.504403 ACAACTACTCCTTCCATCTCATAATG 58.496 38.462 0.00 0.00 0.00 1.90
4449 5388 6.107901 ACTACTCCTTCCATCTCATAATGC 57.892 41.667 0.00 0.00 0.00 3.56
4450 5389 5.604231 ACTACTCCTTCCATCTCATAATGCA 59.396 40.000 0.00 0.00 0.00 3.96
4451 5390 5.378230 ACTCCTTCCATCTCATAATGCAA 57.622 39.130 0.00 0.00 0.00 4.08
4452 5391 5.374921 ACTCCTTCCATCTCATAATGCAAG 58.625 41.667 0.00 0.00 0.00 4.01
4453 5392 5.131642 ACTCCTTCCATCTCATAATGCAAGA 59.868 40.000 0.00 0.00 27.58 3.02
4454 5393 5.371526 TCCTTCCATCTCATAATGCAAGAC 58.628 41.667 0.00 0.00 27.58 3.01
4455 5394 4.212847 CCTTCCATCTCATAATGCAAGACG 59.787 45.833 0.00 0.00 27.58 4.18
4456 5395 3.133691 TCCATCTCATAATGCAAGACGC 58.866 45.455 0.00 0.00 42.89 5.19
4457 5396 3.136763 CCATCTCATAATGCAAGACGCT 58.863 45.455 0.00 0.00 43.06 5.07
4458 5397 3.562973 CCATCTCATAATGCAAGACGCTT 59.437 43.478 0.00 0.00 43.06 4.68
4459 5398 4.036027 CCATCTCATAATGCAAGACGCTTT 59.964 41.667 0.00 0.00 43.06 3.51
4460 5399 5.449588 CCATCTCATAATGCAAGACGCTTTT 60.450 40.000 0.00 0.00 43.06 2.27
4461 5400 5.627499 TCTCATAATGCAAGACGCTTTTT 57.373 34.783 0.00 0.00 43.06 1.94
4462 5401 5.393124 TCTCATAATGCAAGACGCTTTTTG 58.607 37.500 0.00 0.00 43.06 2.44
4463 5402 5.181056 TCTCATAATGCAAGACGCTTTTTGA 59.819 36.000 0.00 0.00 40.73 2.69
4464 5403 5.153513 TCATAATGCAAGACGCTTTTTGAC 58.846 37.500 0.00 0.00 39.28 3.18
4465 5404 3.435105 AATGCAAGACGCTTTTTGACA 57.565 38.095 0.00 0.00 43.06 3.58
4466 5405 2.187351 TGCAAGACGCTTTTTGACAC 57.813 45.000 0.00 0.00 43.06 3.67
4467 5406 1.742831 TGCAAGACGCTTTTTGACACT 59.257 42.857 0.00 0.00 43.06 3.55
4468 5407 2.939756 TGCAAGACGCTTTTTGACACTA 59.060 40.909 0.00 0.00 43.06 2.74
4469 5408 3.563808 TGCAAGACGCTTTTTGACACTAT 59.436 39.130 0.00 0.00 43.06 2.12
4470 5409 4.752604 TGCAAGACGCTTTTTGACACTATA 59.247 37.500 0.00 0.00 43.06 1.31
4471 5410 5.080068 GCAAGACGCTTTTTGACACTATAC 58.920 41.667 0.00 0.00 37.77 1.47
4472 5411 5.107065 GCAAGACGCTTTTTGACACTATACT 60.107 40.000 0.00 0.00 37.77 2.12
4473 5412 6.090358 GCAAGACGCTTTTTGACACTATACTA 59.910 38.462 0.00 0.00 37.77 1.82
4474 5413 7.201530 GCAAGACGCTTTTTGACACTATACTAT 60.202 37.037 0.00 0.00 37.77 2.12
4475 5414 8.656849 CAAGACGCTTTTTGACACTATACTATT 58.343 33.333 0.00 0.00 0.00 1.73
4476 5415 8.186178 AGACGCTTTTTGACACTATACTATTG 57.814 34.615 0.00 0.00 0.00 1.90
4477 5416 7.817962 AGACGCTTTTTGACACTATACTATTGT 59.182 33.333 0.00 0.00 0.00 2.71
4478 5417 7.739295 ACGCTTTTTGACACTATACTATTGTG 58.261 34.615 8.56 8.56 40.92 3.33
4479 5418 7.601130 ACGCTTTTTGACACTATACTATTGTGA 59.399 33.333 15.05 0.00 38.95 3.58
4480 5419 8.440059 CGCTTTTTGACACTATACTATTGTGAA 58.560 33.333 15.05 3.33 38.95 3.18
4507 5446 6.971726 ATGTCTTACATTATGGGACGTAGA 57.028 37.500 0.00 0.00 34.67 2.59
4508 5447 6.387041 TGTCTTACATTATGGGACGTAGAG 57.613 41.667 0.00 0.00 0.00 2.43
4509 5448 6.124340 TGTCTTACATTATGGGACGTAGAGA 58.876 40.000 0.00 0.00 0.00 3.10
4510 5449 6.604396 TGTCTTACATTATGGGACGTAGAGAA 59.396 38.462 0.00 0.00 0.00 2.87
4556 5495 3.982516 AGGAGTAAGCCAGACATAGTCA 58.017 45.455 0.00 0.00 34.60 3.41
4588 5530 7.563888 TGTAGATGACTATGCTAACTACGTT 57.436 36.000 0.00 0.00 33.75 3.99
4597 5539 1.591619 GCTAACTACGTTGGCCGAATC 59.408 52.381 0.00 0.00 42.72 2.52
4600 5542 0.539986 ACTACGTTGGCCGAATCCAT 59.460 50.000 0.00 0.00 40.70 3.41
4601 5543 1.065709 ACTACGTTGGCCGAATCCATT 60.066 47.619 0.00 0.00 40.70 3.16
4602 5544 2.014128 CTACGTTGGCCGAATCCATTT 58.986 47.619 0.00 0.00 40.70 2.32
4603 5545 0.525761 ACGTTGGCCGAATCCATTTG 59.474 50.000 0.00 0.00 40.70 2.32
4604 5546 0.525761 CGTTGGCCGAATCCATTTGT 59.474 50.000 0.00 0.00 39.56 2.83
4605 5547 1.740585 CGTTGGCCGAATCCATTTGTA 59.259 47.619 0.00 0.00 39.56 2.41
4606 5548 2.223249 CGTTGGCCGAATCCATTTGTAG 60.223 50.000 0.00 0.00 39.56 2.74
4607 5549 1.388547 TGGCCGAATCCATTTGTAGC 58.611 50.000 0.00 0.00 0.00 3.58
4609 5551 2.171659 TGGCCGAATCCATTTGTAGCTA 59.828 45.455 0.00 0.00 0.00 3.32
4610 5552 2.808543 GGCCGAATCCATTTGTAGCTAG 59.191 50.000 0.00 0.00 0.00 3.42
4685 7090 8.716909 GTGGTCAATTTACAAAAATATTGGGTG 58.283 33.333 0.00 0.00 34.12 4.61
4691 7096 7.954788 TTTACAAAAATATTGGGTGTCTTGC 57.045 32.000 3.02 0.00 0.00 4.01
4866 7272 2.068519 TCGCATACACTCTGCACTTTG 58.931 47.619 0.00 0.00 39.64 2.77
4870 7276 4.610945 GCATACACTCTGCACTTTGTTTT 58.389 39.130 0.00 0.00 39.46 2.43
4873 7279 6.863126 GCATACACTCTGCACTTTGTTTTTAT 59.137 34.615 0.00 0.00 39.46 1.40
4874 7280 8.020819 GCATACACTCTGCACTTTGTTTTTATA 58.979 33.333 0.00 0.00 39.46 0.98
4875 7281 9.891828 CATACACTCTGCACTTTGTTTTTATAA 57.108 29.630 0.00 0.00 0.00 0.98
4878 7284 8.629158 ACACTCTGCACTTTGTTTTTATAATCA 58.371 29.630 0.00 0.00 0.00 2.57
4879 7285 9.630098 CACTCTGCACTTTGTTTTTATAATCAT 57.370 29.630 0.00 0.00 0.00 2.45
5076 10237 5.240623 TGTCCACATACACATTGAACCTTTC 59.759 40.000 0.00 0.00 0.00 2.62
5079 10240 5.335897 CCACATACACATTGAACCTTTCTGG 60.336 44.000 0.00 0.00 42.93 3.86
5080 10241 4.766891 ACATACACATTGAACCTTTCTGGG 59.233 41.667 0.00 0.00 41.11 4.45
5086 10247 3.935818 TTGAACCTTTCTGGGTACACA 57.064 42.857 0.00 0.00 38.87 3.72
5104 10265 9.897744 GGGTACACATTGAACATTATTCATATG 57.102 33.333 0.00 0.00 0.00 1.78
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 8.939201 TTGACAAAAATCTGAATGCTTACAAA 57.061 26.923 0.00 0.00 0.00 2.83
1 2 8.980610 CATTGACAAAAATCTGAATGCTTACAA 58.019 29.630 0.00 0.00 0.00 2.41
2 3 8.143193 ACATTGACAAAAATCTGAATGCTTACA 58.857 29.630 0.00 0.00 0.00 2.41
3 4 8.524870 ACATTGACAAAAATCTGAATGCTTAC 57.475 30.769 0.00 0.00 0.00 2.34
4 5 9.545105 AAACATTGACAAAAATCTGAATGCTTA 57.455 25.926 0.00 0.00 0.00 3.09
5 6 8.339714 CAAACATTGACAAAAATCTGAATGCTT 58.660 29.630 0.00 0.00 0.00 3.91
6 7 7.519328 GCAAACATTGACAAAAATCTGAATGCT 60.519 33.333 0.00 0.00 0.00 3.79
7 8 6.575942 GCAAACATTGACAAAAATCTGAATGC 59.424 34.615 0.00 0.00 0.00 3.56
8 9 7.584847 GTGCAAACATTGACAAAAATCTGAATG 59.415 33.333 0.00 0.00 0.00 2.67
9 10 7.280428 TGTGCAAACATTGACAAAAATCTGAAT 59.720 29.630 0.00 0.00 0.00 2.57
10 11 6.592994 TGTGCAAACATTGACAAAAATCTGAA 59.407 30.769 0.00 0.00 0.00 3.02
11 12 6.104665 TGTGCAAACATTGACAAAAATCTGA 58.895 32.000 0.00 0.00 0.00 3.27
12 13 6.347270 TGTGCAAACATTGACAAAAATCTG 57.653 33.333 0.00 0.00 0.00 2.90
13 14 6.981762 TTGTGCAAACATTGACAAAAATCT 57.018 29.167 0.00 0.00 32.11 2.40
14 15 8.445193 TTTTTGTGCAAACATTGACAAAAATC 57.555 26.923 23.48 4.92 44.23 2.17
68 69 9.119418 TCATGATGAACAGTAAACTCTGAAAAA 57.881 29.630 0.00 0.00 38.63 1.94
69 70 8.675705 TCATGATGAACAGTAAACTCTGAAAA 57.324 30.769 0.00 0.00 38.63 2.29
70 71 7.933577 ACTCATGATGAACAGTAAACTCTGAAA 59.066 33.333 0.00 0.00 38.63 2.69
71 72 7.445121 ACTCATGATGAACAGTAAACTCTGAA 58.555 34.615 0.00 0.00 38.63 3.02
72 73 6.997655 ACTCATGATGAACAGTAAACTCTGA 58.002 36.000 0.00 0.00 38.63 3.27
73 74 7.386025 TGAACTCATGATGAACAGTAAACTCTG 59.614 37.037 0.00 0.00 40.80 3.35
74 75 7.445121 TGAACTCATGATGAACAGTAAACTCT 58.555 34.615 0.00 0.00 0.00 3.24
75 76 7.658179 TGAACTCATGATGAACAGTAAACTC 57.342 36.000 0.00 0.00 0.00 3.01
76 77 8.450578 TTTGAACTCATGATGAACAGTAAACT 57.549 30.769 0.00 0.00 0.00 2.66
77 78 9.121517 CATTTGAACTCATGATGAACAGTAAAC 57.878 33.333 0.00 0.00 0.00 2.01
78 79 9.065798 TCATTTGAACTCATGATGAACAGTAAA 57.934 29.630 0.00 0.00 30.80 2.01
79 80 8.620116 TCATTTGAACTCATGATGAACAGTAA 57.380 30.769 0.00 0.00 30.80 2.24
80 81 7.879677 ACTCATTTGAACTCATGATGAACAGTA 59.120 33.333 0.00 0.00 32.32 2.74
81 82 6.713903 ACTCATTTGAACTCATGATGAACAGT 59.286 34.615 0.00 0.00 32.32 3.55
82 83 7.142306 ACTCATTTGAACTCATGATGAACAG 57.858 36.000 0.00 0.00 32.32 3.16
83 84 7.514784 AACTCATTTGAACTCATGATGAACA 57.485 32.000 0.00 0.00 32.32 3.18
84 85 6.740002 CGAACTCATTTGAACTCATGATGAAC 59.260 38.462 0.00 0.00 32.32 3.18
85 86 6.621380 GCGAACTCATTTGAACTCATGATGAA 60.621 38.462 0.00 0.00 32.32 2.57
86 87 5.163824 GCGAACTCATTTGAACTCATGATGA 60.164 40.000 0.00 0.00 32.02 2.92
87 88 5.026462 GCGAACTCATTTGAACTCATGATG 58.974 41.667 0.00 0.00 0.00 3.07
88 89 4.696877 TGCGAACTCATTTGAACTCATGAT 59.303 37.500 0.00 0.00 0.00 2.45
89 90 4.064388 TGCGAACTCATTTGAACTCATGA 58.936 39.130 0.00 0.00 0.00 3.07
90 91 4.408993 TGCGAACTCATTTGAACTCATG 57.591 40.909 0.00 0.00 0.00 3.07
91 92 4.614535 GCTTGCGAACTCATTTGAACTCAT 60.615 41.667 0.00 0.00 0.00 2.90
92 93 3.303990 GCTTGCGAACTCATTTGAACTCA 60.304 43.478 0.00 0.00 0.00 3.41
93 94 3.229552 GCTTGCGAACTCATTTGAACTC 58.770 45.455 0.00 0.00 0.00 3.01
94 95 2.618241 TGCTTGCGAACTCATTTGAACT 59.382 40.909 0.00 0.00 0.00 3.01
95 96 2.975851 CTGCTTGCGAACTCATTTGAAC 59.024 45.455 0.00 0.00 0.00 3.18
96 97 2.877786 TCTGCTTGCGAACTCATTTGAA 59.122 40.909 0.00 0.00 0.00 2.69
97 98 2.224079 GTCTGCTTGCGAACTCATTTGA 59.776 45.455 0.00 0.00 0.00 2.69
98 99 2.225019 AGTCTGCTTGCGAACTCATTTG 59.775 45.455 0.00 0.00 0.00 2.32
99 100 2.498167 AGTCTGCTTGCGAACTCATTT 58.502 42.857 0.00 0.00 0.00 2.32
100 101 2.175878 AGTCTGCTTGCGAACTCATT 57.824 45.000 0.00 0.00 0.00 2.57
101 102 3.118992 TCATAGTCTGCTTGCGAACTCAT 60.119 43.478 3.55 0.00 0.00 2.90
102 103 2.231235 TCATAGTCTGCTTGCGAACTCA 59.769 45.455 3.55 0.00 0.00 3.41
103 104 2.600867 GTCATAGTCTGCTTGCGAACTC 59.399 50.000 3.55 0.00 0.00 3.01
104 105 2.232452 AGTCATAGTCTGCTTGCGAACT 59.768 45.455 0.00 5.33 0.00 3.01
105 106 2.611518 AGTCATAGTCTGCTTGCGAAC 58.388 47.619 0.00 0.00 0.00 3.95
106 107 3.319137 AAGTCATAGTCTGCTTGCGAA 57.681 42.857 0.00 0.00 0.00 4.70
107 108 3.319137 AAAGTCATAGTCTGCTTGCGA 57.681 42.857 0.00 0.00 0.00 5.10
108 109 3.187227 ACAAAAGTCATAGTCTGCTTGCG 59.813 43.478 0.00 0.00 0.00 4.85
109 110 4.756084 ACAAAAGTCATAGTCTGCTTGC 57.244 40.909 0.00 0.00 0.00 4.01
110 111 9.515020 TTTTTAACAAAAGTCATAGTCTGCTTG 57.485 29.630 0.00 0.00 0.00 4.01
133 134 1.472552 GCGGTGCCAAGAAACCTTTTT 60.473 47.619 0.00 0.00 34.06 1.94
134 135 0.104120 GCGGTGCCAAGAAACCTTTT 59.896 50.000 0.00 0.00 34.06 2.27
135 136 1.739667 GCGGTGCCAAGAAACCTTT 59.260 52.632 0.00 0.00 34.06 3.11
136 137 3.443588 GCGGTGCCAAGAAACCTT 58.556 55.556 0.00 0.00 34.06 3.50
147 148 3.480133 AGTCCTATGGGGCGGTGC 61.480 66.667 0.00 0.00 43.12 5.01
148 149 2.311688 GACAGTCCTATGGGGCGGTG 62.312 65.000 10.77 0.00 45.08 4.94
149 150 2.040606 ACAGTCCTATGGGGCGGT 59.959 61.111 0.00 0.00 43.12 5.68
150 151 2.822399 GACAGTCCTATGGGGCGG 59.178 66.667 0.00 0.00 43.12 6.13
151 152 2.417516 CGACAGTCCTATGGGGCG 59.582 66.667 0.00 0.00 43.12 6.13
152 153 1.972660 AAGCGACAGTCCTATGGGGC 61.973 60.000 0.00 0.00 37.52 5.80
153 154 0.541863 AAAGCGACAGTCCTATGGGG 59.458 55.000 0.00 0.00 0.00 4.96
154 155 2.009774 CAAAAGCGACAGTCCTATGGG 58.990 52.381 0.00 0.00 0.00 4.00
155 156 2.699954 ACAAAAGCGACAGTCCTATGG 58.300 47.619 0.00 0.00 0.00 2.74
156 157 3.865745 CCTACAAAAGCGACAGTCCTATG 59.134 47.826 0.00 0.36 0.00 2.23
157 158 3.118738 CCCTACAAAAGCGACAGTCCTAT 60.119 47.826 0.00 0.00 0.00 2.57
158 159 2.232941 CCCTACAAAAGCGACAGTCCTA 59.767 50.000 0.00 0.00 0.00 2.94
159 160 1.002087 CCCTACAAAAGCGACAGTCCT 59.998 52.381 0.00 0.00 0.00 3.85
160 161 1.270678 ACCCTACAAAAGCGACAGTCC 60.271 52.381 0.00 0.00 0.00 3.85
161 162 2.067013 GACCCTACAAAAGCGACAGTC 58.933 52.381 0.00 0.00 0.00 3.51
162 163 1.414919 TGACCCTACAAAAGCGACAGT 59.585 47.619 0.00 0.00 0.00 3.55
163 164 1.798813 GTGACCCTACAAAAGCGACAG 59.201 52.381 0.00 0.00 0.00 3.51
164 165 1.870580 CGTGACCCTACAAAAGCGACA 60.871 52.381 0.00 0.00 0.00 4.35
165 166 0.788391 CGTGACCCTACAAAAGCGAC 59.212 55.000 0.00 0.00 0.00 5.19
166 167 0.390124 ACGTGACCCTACAAAAGCGA 59.610 50.000 0.00 0.00 0.00 4.93
167 168 1.070175 CAACGTGACCCTACAAAAGCG 60.070 52.381 0.00 0.00 0.00 4.68
168 169 2.215196 TCAACGTGACCCTACAAAAGC 58.785 47.619 0.00 0.00 0.00 3.51
169 170 3.875134 AGTTCAACGTGACCCTACAAAAG 59.125 43.478 0.00 0.00 0.00 2.27
170 171 3.876341 AGTTCAACGTGACCCTACAAAA 58.124 40.909 0.00 0.00 0.00 2.44
171 172 3.547054 AGTTCAACGTGACCCTACAAA 57.453 42.857 0.00 0.00 0.00 2.83
172 173 3.547054 AAGTTCAACGTGACCCTACAA 57.453 42.857 0.00 0.00 0.00 2.41
173 174 3.547054 AAAGTTCAACGTGACCCTACA 57.453 42.857 0.00 0.00 0.00 2.74
174 175 4.625028 AGTAAAGTTCAACGTGACCCTAC 58.375 43.478 0.00 0.00 0.00 3.18
175 176 4.557296 CGAGTAAAGTTCAACGTGACCCTA 60.557 45.833 0.00 0.00 0.00 3.53
176 177 3.725490 GAGTAAAGTTCAACGTGACCCT 58.275 45.455 0.00 0.00 0.00 4.34
177 178 2.473984 CGAGTAAAGTTCAACGTGACCC 59.526 50.000 0.00 0.00 0.00 4.46
178 179 3.118542 ACGAGTAAAGTTCAACGTGACC 58.881 45.455 0.00 0.00 32.93 4.02
179 180 4.147133 GGTACGAGTAAAGTTCAACGTGAC 59.853 45.833 0.00 0.00 35.66 3.67
180 181 4.290155 GGTACGAGTAAAGTTCAACGTGA 58.710 43.478 0.00 0.00 35.66 4.35
181 182 3.426525 GGGTACGAGTAAAGTTCAACGTG 59.573 47.826 0.00 0.00 35.66 4.49
182 183 3.642705 GGGTACGAGTAAAGTTCAACGT 58.357 45.455 0.00 0.00 37.68 3.99
183 184 2.658325 CGGGTACGAGTAAAGTTCAACG 59.342 50.000 0.00 0.00 44.60 4.10
184 185 3.642705 ACGGGTACGAGTAAAGTTCAAC 58.357 45.455 0.00 0.00 44.60 3.18
185 186 4.298332 GAACGGGTACGAGTAAAGTTCAA 58.702 43.478 15.30 0.00 44.60 2.69
186 187 3.305335 GGAACGGGTACGAGTAAAGTTCA 60.305 47.826 18.76 0.00 44.60 3.18
187 188 3.245797 GGAACGGGTACGAGTAAAGTTC 58.754 50.000 13.39 13.39 44.60 3.01
188 189 3.303881 GGAACGGGTACGAGTAAAGTT 57.696 47.619 0.00 0.00 44.60 2.66
202 203 7.415770 GTAGTACTAGTGCTACACGGAACGG 62.416 52.000 33.43 0.00 46.32 4.44
203 204 4.493220 GTAGTACTAGTGCTACACGGAACG 60.493 50.000 33.43 0.00 46.87 3.95
204 205 4.201861 GGTAGTACTAGTGCTACACGGAAC 60.202 50.000 36.44 22.32 46.26 3.62
205 206 3.941483 GGTAGTACTAGTGCTACACGGAA 59.059 47.826 36.44 12.10 46.26 4.30
206 207 3.198635 AGGTAGTACTAGTGCTACACGGA 59.801 47.826 36.44 12.73 46.26 4.69
207 208 3.539604 AGGTAGTACTAGTGCTACACGG 58.460 50.000 36.44 0.00 46.26 4.94
208 209 4.201891 CCAAGGTAGTACTAGTGCTACACG 60.202 50.000 36.44 27.08 46.26 4.49
209 210 4.704057 ACCAAGGTAGTACTAGTGCTACAC 59.296 45.833 36.44 28.50 46.26 2.90
210 211 4.927049 ACCAAGGTAGTACTAGTGCTACA 58.073 43.478 36.44 14.65 46.26 2.74
211 212 5.882557 TGTACCAAGGTAGTACTAGTGCTAC 59.117 44.000 31.75 31.75 44.56 3.58
212 213 6.065976 TGTACCAAGGTAGTACTAGTGCTA 57.934 41.667 15.82 15.82 40.61 3.49
213 214 4.927049 TGTACCAAGGTAGTACTAGTGCT 58.073 43.478 17.94 17.94 40.61 4.40
214 215 4.946157 TCTGTACCAAGGTAGTACTAGTGC 59.054 45.833 5.39 3.75 40.61 4.40
215 216 7.055378 AGATCTGTACCAAGGTAGTACTAGTG 58.945 42.308 5.39 2.26 40.61 2.74
216 217 7.092533 TGAGATCTGTACCAAGGTAGTACTAGT 60.093 40.741 0.00 0.00 40.61 2.57
217 218 7.281098 TGAGATCTGTACCAAGGTAGTACTAG 58.719 42.308 0.00 0.00 40.61 2.57
218 219 7.204243 TGAGATCTGTACCAAGGTAGTACTA 57.796 40.000 0.00 0.00 40.61 1.82
219 220 6.075949 TGAGATCTGTACCAAGGTAGTACT 57.924 41.667 0.00 0.00 40.61 2.73
236 237 1.805869 AACTGTGTGCAGCTGAGATC 58.194 50.000 20.43 5.18 46.30 2.75
480 500 0.686441 TGAGGGACATCGGATTCGGT 60.686 55.000 0.00 0.00 36.95 4.69
494 514 1.142465 CAGTGGGATTGGATCTGAGGG 59.858 57.143 0.00 0.00 0.00 4.30
1277 1343 4.828925 GTGAGGCCTCCTGCTCGC 62.829 72.222 29.95 7.81 40.92 5.03
1278 1344 4.504916 CGTGAGGCCTCCTGCTCG 62.505 72.222 29.95 20.29 40.92 5.03
1279 1345 3.363844 GACGTGAGGCCTCCTGCTC 62.364 68.421 29.95 14.66 40.92 4.26
1296 1362 2.967397 CACTTGACGTAGGGCCGA 59.033 61.111 0.00 0.00 0.00 5.54
1472 1538 2.159226 AGAATGAGAATGGTCGACGGTC 60.159 50.000 9.92 6.56 0.00 4.79
1561 1637 1.347707 TGAAGATTCAACTGGCCGAGT 59.652 47.619 0.00 0.00 35.94 4.18
1583 1659 3.121030 CTCGCAAGCAACTCCCGG 61.121 66.667 0.00 0.00 37.18 5.73
1622 1706 9.032420 CGATCTCTGGTAAAAGTAGTAAAATCC 57.968 37.037 0.00 0.00 0.00 3.01
1630 1714 7.033530 ACAGATCGATCTCTGGTAAAAGTAG 57.966 40.000 25.00 11.36 45.67 2.57
1779 1866 2.514458 ATGGCTTCCGATTTTGAGGT 57.486 45.000 0.00 0.00 0.00 3.85
1822 1909 1.067295 ATCAGTTTGCTCCCAGTCCA 58.933 50.000 0.00 0.00 0.00 4.02
1910 1997 3.707793 ACTAGCGATTTAAGAAGAGCGG 58.292 45.455 0.00 0.00 0.00 5.52
1927 2014 9.393249 GTACATCGTACTACTACACTCTACTAG 57.607 40.741 0.00 0.00 0.00 2.57
1951 2038 0.829990 TGCTTCGCATGATCCCTGTA 59.170 50.000 0.00 0.00 31.71 2.74
2008 2095 1.152902 ATCATGCACATCGGTGGGG 60.153 57.895 0.00 0.00 45.38 4.96
2034 2121 3.258872 TGGAACAAGATTTTGCTGGATGG 59.741 43.478 0.00 0.00 37.85 3.51
2121 2208 4.642885 CACCACTTACTTTTTCACCTTCCA 59.357 41.667 0.00 0.00 0.00 3.53
2122 2209 4.643334 ACACCACTTACTTTTTCACCTTCC 59.357 41.667 0.00 0.00 0.00 3.46
2175 2490 5.277974 GGCGCAATGAATGATGTATTGTAGT 60.278 40.000 10.83 0.00 34.98 2.73
2176 2491 5.149273 GGCGCAATGAATGATGTATTGTAG 58.851 41.667 10.83 0.00 34.98 2.74
2177 2492 4.023279 GGGCGCAATGAATGATGTATTGTA 60.023 41.667 10.83 0.00 34.98 2.41
2178 2493 3.243501 GGGCGCAATGAATGATGTATTGT 60.244 43.478 10.83 0.00 34.98 2.71
2219 2534 1.957668 TACTAGTAGCGACGATGCCA 58.042 50.000 0.00 0.00 34.65 4.92
2223 2538 5.237996 TGCAGTTAATACTAGTAGCGACGAT 59.762 40.000 8.85 0.00 31.96 3.73
2227 2542 4.641541 TGGTGCAGTTAATACTAGTAGCGA 59.358 41.667 8.85 0.00 31.96 4.93
2229 2544 4.738740 CGTGGTGCAGTTAATACTAGTAGC 59.261 45.833 8.85 5.75 31.96 3.58
2230 2545 5.888105 ACGTGGTGCAGTTAATACTAGTAG 58.112 41.667 8.85 0.00 31.96 2.57
2231 2546 5.649395 AGACGTGGTGCAGTTAATACTAGTA 59.351 40.000 4.77 4.77 31.96 1.82
2232 2547 4.461781 AGACGTGGTGCAGTTAATACTAGT 59.538 41.667 0.00 0.00 31.96 2.57
2235 2550 3.585862 CAGACGTGGTGCAGTTAATACT 58.414 45.455 0.00 0.00 34.00 2.12
2272 2587 0.814010 GTTGCACTGACACCGGTTCT 60.814 55.000 2.97 0.00 0.00 3.01
2397 2713 9.416794 GAGTTCGATGTATGATAAGATTGATGT 57.583 33.333 0.00 0.00 0.00 3.06
2462 2782 5.411781 CGGATATTCTCTAGCACCAATACC 58.588 45.833 0.00 0.00 0.00 2.73
2505 2836 7.552687 AGGATAAACTTCTATTTGCGATGTCAA 59.447 33.333 0.00 0.00 0.00 3.18
2655 2990 3.764885 ACTACTCATTGCCGAATTTGC 57.235 42.857 0.00 0.00 0.00 3.68
2663 2998 3.132289 TGGCACTAGTACTACTCATTGCC 59.868 47.826 19.80 19.80 42.92 4.52
2837 3181 3.108847 AGTGGGAACTGGGTTTGAAAA 57.891 42.857 0.00 0.00 0.00 2.29
2867 3398 7.010091 CAGTGGAAACCAAGTTACAATGAAAAC 59.990 37.037 6.66 0.00 33.68 2.43
2868 3399 7.038659 CAGTGGAAACCAAGTTACAATGAAAA 58.961 34.615 6.66 0.00 33.68 2.29
2869 3400 6.406400 CCAGTGGAAACCAAGTTACAATGAAA 60.406 38.462 1.68 0.00 33.68 2.69
2870 3401 5.068460 CCAGTGGAAACCAAGTTACAATGAA 59.932 40.000 1.68 0.00 33.68 2.57
2871 3402 4.582656 CCAGTGGAAACCAAGTTACAATGA 59.417 41.667 1.68 0.00 33.68 2.57
2872 3403 4.582656 TCCAGTGGAAACCAAGTTACAATG 59.417 41.667 10.20 5.89 34.18 2.82
2873 3404 4.798882 TCCAGTGGAAACCAAGTTACAAT 58.201 39.130 10.20 0.00 34.18 2.71
2874 3405 4.237976 TCCAGTGGAAACCAAGTTACAA 57.762 40.909 10.20 0.00 34.18 2.41
2875 3406 3.935818 TCCAGTGGAAACCAAGTTACA 57.064 42.857 10.20 0.00 34.18 2.41
2876 3407 5.557866 AGTATCCAGTGGAAACCAAGTTAC 58.442 41.667 17.71 11.27 34.18 2.50
2877 3408 5.546499 AGAGTATCCAGTGGAAACCAAGTTA 59.454 40.000 17.71 0.00 34.34 2.24
2878 3409 4.351111 AGAGTATCCAGTGGAAACCAAGTT 59.649 41.667 17.71 0.00 34.34 2.66
2879 3410 3.910627 AGAGTATCCAGTGGAAACCAAGT 59.089 43.478 17.71 0.00 34.34 3.16
2880 3411 4.223923 AGAGAGTATCCAGTGGAAACCAAG 59.776 45.833 17.71 0.00 34.34 3.61
2881 3412 4.168101 AGAGAGTATCCAGTGGAAACCAA 58.832 43.478 17.71 0.00 34.34 3.67
2882 3413 3.769844 GAGAGAGTATCCAGTGGAAACCA 59.230 47.826 17.71 0.00 34.34 3.67
2883 3414 3.181485 CGAGAGAGTATCCAGTGGAAACC 60.181 52.174 17.71 6.97 34.34 3.27
2884 3415 3.181485 CCGAGAGAGTATCCAGTGGAAAC 60.181 52.174 17.71 7.95 34.34 2.78
2885 3416 3.024547 CCGAGAGAGTATCCAGTGGAAA 58.975 50.000 17.71 0.00 34.34 3.13
2886 3417 2.025226 ACCGAGAGAGTATCCAGTGGAA 60.025 50.000 17.71 2.79 34.34 3.53
2887 3418 1.564818 ACCGAGAGAGTATCCAGTGGA 59.435 52.381 15.88 15.88 33.66 4.02
2888 3419 1.678627 CACCGAGAGAGTATCCAGTGG 59.321 57.143 1.40 1.40 33.66 4.00
2889 3420 1.066303 GCACCGAGAGAGTATCCAGTG 59.934 57.143 0.00 0.00 33.66 3.66
2890 3421 1.064314 AGCACCGAGAGAGTATCCAGT 60.064 52.381 0.00 0.00 33.66 4.00
2891 3422 1.686355 AGCACCGAGAGAGTATCCAG 58.314 55.000 0.00 0.00 33.66 3.86
2892 3423 1.751351 CAAGCACCGAGAGAGTATCCA 59.249 52.381 0.00 0.00 33.66 3.41
3024 3587 0.531974 TGTTGGGTCGTCTTCAGTGC 60.532 55.000 0.00 0.00 0.00 4.40
3090 3653 3.657625 GCGATCCGTAAAACATTTATGCG 59.342 43.478 0.00 0.00 0.00 4.73
3135 3704 4.923893 TGGCAAAGCTGATCATAAATTCG 58.076 39.130 0.00 0.00 0.00 3.34
3148 3717 2.587080 CCATCCACATGGCAAAGCT 58.413 52.632 0.00 0.00 43.55 3.74
3215 3784 3.373565 GCAAAGCTTGGGACCGGG 61.374 66.667 6.32 0.00 0.00 5.73
3216 3785 2.282462 AGCAAAGCTTGGGACCGG 60.282 61.111 0.00 0.00 33.89 5.28
3235 3804 2.955660 TCAAGTTTAACACAGGCCAAGG 59.044 45.455 5.01 0.00 0.00 3.61
3263 3832 8.998277 ATCAGTTACCAGTATACTGTACAGAT 57.002 34.615 29.30 22.93 42.27 2.90
3270 3839 7.268586 AGCTGAAATCAGTTACCAGTATACTG 58.731 38.462 23.58 23.58 45.45 2.74
3272 3841 6.702282 GGAGCTGAAATCAGTTACCAGTATAC 59.298 42.308 11.77 0.00 45.45 1.47
3275 3844 4.530553 TGGAGCTGAAATCAGTTACCAGTA 59.469 41.667 11.77 0.00 45.45 2.74
3276 3845 3.327757 TGGAGCTGAAATCAGTTACCAGT 59.672 43.478 11.77 0.00 45.45 4.00
3278 3847 4.202461 ACTTGGAGCTGAAATCAGTTACCA 60.202 41.667 11.77 14.05 45.45 3.25
3279 3848 4.327680 ACTTGGAGCTGAAATCAGTTACC 58.672 43.478 11.77 12.06 45.45 2.85
3280 3849 5.239525 ACAACTTGGAGCTGAAATCAGTTAC 59.760 40.000 11.77 7.36 45.45 2.50
3281 3850 5.376625 ACAACTTGGAGCTGAAATCAGTTA 58.623 37.500 11.77 0.00 45.45 2.24
3346 4259 0.798776 CCATCGCTCCACACTTGAAC 59.201 55.000 0.00 0.00 0.00 3.18
3427 4340 1.281867 CCCAGTATCTTTGCCCAGTGA 59.718 52.381 0.00 0.00 0.00 3.41
3920 4839 1.227556 GGTTGGCGCCGTAGATGAT 60.228 57.895 23.90 0.00 0.00 2.45
4174 5093 2.239681 ACCAACTGAAAACCACCCAA 57.760 45.000 0.00 0.00 0.00 4.12
4202 5128 3.755378 AGCAAATCACTCTCGAAAGCAAT 59.245 39.130 0.00 0.00 0.00 3.56
4204 5130 2.481568 CAGCAAATCACTCTCGAAAGCA 59.518 45.455 0.00 0.00 0.00 3.91
4206 5132 2.417933 CCCAGCAAATCACTCTCGAAAG 59.582 50.000 0.00 0.00 0.00 2.62
4239 5165 2.124736 CCCACACCCGCATCGATT 60.125 61.111 0.00 0.00 0.00 3.34
4256 5182 1.095228 CCCACACACACACAGTCACC 61.095 60.000 0.00 0.00 0.00 4.02
4261 5187 0.878523 CGTACCCCACACACACACAG 60.879 60.000 0.00 0.00 0.00 3.66
4262 5188 1.144276 CGTACCCCACACACACACA 59.856 57.895 0.00 0.00 0.00 3.72
4264 5190 0.759959 ATTCGTACCCCACACACACA 59.240 50.000 0.00 0.00 0.00 3.72
4265 5191 1.153353 CATTCGTACCCCACACACAC 58.847 55.000 0.00 0.00 0.00 3.82
4274 5200 3.725740 CGTAACATCGTACATTCGTACCC 59.274 47.826 0.00 0.00 44.41 3.69
4307 5246 2.735126 GCAATCCTGGGTACATTTTGCG 60.735 50.000 0.00 0.00 31.00 4.85
4332 5271 9.057089 CAGTCCTCTAAACTAGTTTGACAAATT 57.943 33.333 27.40 9.71 34.23 1.82
4379 5318 2.489329 CAAACACCCATAGACCAAGCAG 59.511 50.000 0.00 0.00 0.00 4.24
4427 5366 6.106648 TGCATTATGAGATGGAAGGAGTAG 57.893 41.667 0.00 0.00 0.00 2.57
4428 5367 6.499106 TTGCATTATGAGATGGAAGGAGTA 57.501 37.500 0.00 0.00 33.25 2.59
4429 5368 5.374921 CTTGCATTATGAGATGGAAGGAGT 58.625 41.667 10.18 0.00 45.89 3.85
4430 5369 5.943706 CTTGCATTATGAGATGGAAGGAG 57.056 43.478 10.18 0.00 45.89 3.69
4434 5373 3.561310 GCGTCTTGCATTATGAGATGGAA 59.439 43.478 6.68 0.00 45.45 3.53
4435 5374 3.133691 GCGTCTTGCATTATGAGATGGA 58.866 45.455 6.68 0.00 45.45 3.41
4436 5375 3.532892 GCGTCTTGCATTATGAGATGG 57.467 47.619 6.68 0.00 45.45 3.51
4448 5387 2.475200 AGTGTCAAAAAGCGTCTTGC 57.525 45.000 0.00 0.00 46.98 4.01
4449 5388 6.467723 AGTATAGTGTCAAAAAGCGTCTTG 57.532 37.500 0.00 0.00 0.00 3.02
4450 5389 8.656849 CAATAGTATAGTGTCAAAAAGCGTCTT 58.343 33.333 0.00 0.00 30.92 3.01
4451 5390 8.186178 CAATAGTATAGTGTCAAAAAGCGTCT 57.814 34.615 0.00 0.00 30.92 4.18
4480 5419 7.696992 ACGTCCCATAATGTAAGACATTTTT 57.303 32.000 9.92 0.00 45.80 1.94
4481 5420 8.262227 TCTACGTCCCATAATGTAAGACATTTT 58.738 33.333 9.92 0.33 45.80 1.82
4482 5421 7.788026 TCTACGTCCCATAATGTAAGACATTT 58.212 34.615 9.92 0.00 45.80 2.32
4484 5423 6.776116 TCTCTACGTCCCATAATGTAAGACAT 59.224 38.462 0.00 0.00 41.31 3.06
4485 5424 6.124340 TCTCTACGTCCCATAATGTAAGACA 58.876 40.000 0.00 0.00 0.00 3.41
4486 5425 6.630444 TCTCTACGTCCCATAATGTAAGAC 57.370 41.667 0.00 0.00 0.00 3.01
4487 5426 7.834881 ATTCTCTACGTCCCATAATGTAAGA 57.165 36.000 0.00 0.00 0.00 2.10
4488 5427 9.574458 CATATTCTCTACGTCCCATAATGTAAG 57.426 37.037 0.00 0.00 0.00 2.34
4489 5428 9.085645 ACATATTCTCTACGTCCCATAATGTAA 57.914 33.333 0.00 0.00 0.00 2.41
4490 5429 8.645814 ACATATTCTCTACGTCCCATAATGTA 57.354 34.615 0.00 0.00 0.00 2.29
4491 5430 7.540474 ACATATTCTCTACGTCCCATAATGT 57.460 36.000 0.00 0.00 0.00 2.71
4556 5495 9.277783 GTTAGCATAGTCATCTACAAATGGATT 57.722 33.333 0.00 0.00 0.00 3.01
4588 5530 1.064758 AGCTACAAATGGATTCGGCCA 60.065 47.619 2.24 0.00 43.23 5.36
4601 5543 8.503196 CATGTGTTGTTATTTGTCTAGCTACAA 58.497 33.333 0.00 0.00 37.58 2.41
4602 5544 7.875554 TCATGTGTTGTTATTTGTCTAGCTACA 59.124 33.333 0.00 0.00 0.00 2.74
4603 5545 8.251750 TCATGTGTTGTTATTTGTCTAGCTAC 57.748 34.615 0.00 0.00 0.00 3.58
4604 5546 8.840833 TTCATGTGTTGTTATTTGTCTAGCTA 57.159 30.769 0.00 0.00 0.00 3.32
4605 5547 7.744087 TTCATGTGTTGTTATTTGTCTAGCT 57.256 32.000 0.00 0.00 0.00 3.32
4606 5548 8.970691 AATTCATGTGTTGTTATTTGTCTAGC 57.029 30.769 0.00 0.00 0.00 3.42
4609 5551 7.114811 GCGAAATTCATGTGTTGTTATTTGTCT 59.885 33.333 0.00 0.00 0.00 3.41
4610 5552 7.096271 TGCGAAATTCATGTGTTGTTATTTGTC 60.096 33.333 0.00 0.00 0.00 3.18
4622 7010 3.075665 GCGTTTTGCGAAATTCATGTG 57.924 42.857 1.61 0.00 44.77 3.21
4836 7242 5.725042 GCAGAGTGTATGCGAAAATGTACAG 60.725 44.000 0.33 0.00 33.31 2.74
4844 7250 2.455674 AGTGCAGAGTGTATGCGAAA 57.544 45.000 0.00 0.00 46.87 3.46
4849 7255 9.891828 TTATAAAAACAAAGTGCAGAGTGTATG 57.108 29.630 0.00 0.00 0.00 2.39
4995 10156 9.853555 TGTGTATTCATAAAAATGGTGAACATC 57.146 29.630 0.00 0.00 39.40 3.06
5043 10204 7.392953 TCAATGTGTATGTGGACAATGTACAAT 59.607 33.333 0.00 0.00 0.00 2.71
5076 10237 7.389803 TGAATAATGTTCAATGTGTACCCAG 57.610 36.000 0.00 0.00 0.00 4.45
5079 10240 9.398170 GCATATGAATAATGTTCAATGTGTACC 57.602 33.333 6.97 0.00 31.55 3.34
5080 10241 9.949174 TGCATATGAATAATGTTCAATGTGTAC 57.051 29.630 6.97 0.00 31.55 2.90
5104 10265 8.178964 ACATGCATTTAAAACAAATCATCATGC 58.821 29.630 0.00 0.00 35.99 4.06
5112 10273 7.928103 TGCTCAAACATGCATTTAAAACAAAT 58.072 26.923 0.00 0.00 33.94 2.32


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.