Multiple sequence alignment - TraesCS2B01G444400

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G444400 chr2B 100.000 5365 0 0 1 5365 637435958 637441322 0.000000e+00 9908.0
1 TraesCS2B01G444400 chr2B 81.818 495 62 16 1870 2343 359870397 359869910 1.810000e-104 390.0
2 TraesCS2B01G444400 chr2D 93.372 4451 157 56 778 5135 535745868 535750273 0.000000e+00 6458.0
3 TraesCS2B01G444400 chr2D 100.000 38 0 0 5113 5150 535750276 535750313 2.680000e-08 71.3
4 TraesCS2B01G444400 chr2A 92.044 4135 201 49 778 4851 678825465 678829532 0.000000e+00 5696.0
5 TraesCS2B01G444400 chr2A 82.485 491 65 13 1868 2343 762902150 762901666 1.390000e-110 411.0
6 TraesCS2B01G444400 chr6B 92.774 775 54 2 2 775 698327811 698328584 0.000000e+00 1120.0
7 TraesCS2B01G444400 chr4B 91.964 784 55 4 2 777 16672466 16673249 0.000000e+00 1092.0
8 TraesCS2B01G444400 chr4B 92.021 777 60 2 2 777 644287706 644288481 0.000000e+00 1090.0
9 TraesCS2B01G444400 chr4B 91.913 779 55 4 7 778 637636386 637635609 0.000000e+00 1083.0
10 TraesCS2B01G444400 chr4B 91.688 782 59 3 2 777 57534341 57533560 0.000000e+00 1079.0
11 TraesCS2B01G444400 chr4B 91.699 783 58 3 2 777 560191986 560192768 0.000000e+00 1079.0
12 TraesCS2B01G444400 chr4B 91.688 782 55 6 2 777 636456988 636457765 0.000000e+00 1075.0
13 TraesCS2B01G444400 chr6D 91.454 784 64 2 2 782 327733800 327733017 0.000000e+00 1074.0
14 TraesCS2B01G444400 chr5D 91.571 783 59 3 2 777 553074603 553073821 0.000000e+00 1074.0
15 TraesCS2B01G444400 chr5B 83.573 487 56 15 1868 2339 452225519 452225996 8.250000e-118 435.0
16 TraesCS2B01G444400 chr5B 82.093 497 62 17 1868 2343 65077238 65077728 3.010000e-107 399.0
17 TraesCS2B01G444400 chr1B 83.093 485 63 10 1868 2339 642705941 642705463 1.790000e-114 424.0
18 TraesCS2B01G444400 chr1B 82.563 476 64 10 1868 2330 512460268 512459799 8.370000e-108 401.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G444400 chr2B 637435958 637441322 5364 False 9908.00 9908 100.000 1 5365 1 chr2B.!!$F1 5364
1 TraesCS2B01G444400 chr2D 535745868 535750313 4445 False 3264.65 6458 96.686 778 5150 2 chr2D.!!$F1 4372
2 TraesCS2B01G444400 chr2A 678825465 678829532 4067 False 5696.00 5696 92.044 778 4851 1 chr2A.!!$F1 4073
3 TraesCS2B01G444400 chr6B 698327811 698328584 773 False 1120.00 1120 92.774 2 775 1 chr6B.!!$F1 773
4 TraesCS2B01G444400 chr4B 16672466 16673249 783 False 1092.00 1092 91.964 2 777 1 chr4B.!!$F1 775
5 TraesCS2B01G444400 chr4B 644287706 644288481 775 False 1090.00 1090 92.021 2 777 1 chr4B.!!$F4 775
6 TraesCS2B01G444400 chr4B 637635609 637636386 777 True 1083.00 1083 91.913 7 778 1 chr4B.!!$R2 771
7 TraesCS2B01G444400 chr4B 57533560 57534341 781 True 1079.00 1079 91.688 2 777 1 chr4B.!!$R1 775
8 TraesCS2B01G444400 chr4B 560191986 560192768 782 False 1079.00 1079 91.699 2 777 1 chr4B.!!$F2 775
9 TraesCS2B01G444400 chr4B 636456988 636457765 777 False 1075.00 1075 91.688 2 777 1 chr4B.!!$F3 775
10 TraesCS2B01G444400 chr6D 327733017 327733800 783 True 1074.00 1074 91.454 2 782 1 chr6D.!!$R1 780
11 TraesCS2B01G444400 chr5D 553073821 553074603 782 True 1074.00 1074 91.571 2 777 1 chr5D.!!$R1 775

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
252 254 0.104620 AGTGTTGGTAGTCCCCACCT 60.105 55.0 0.00 0.0 36.11 4.00 F
1771 1797 0.034896 AACGCCCAAATGACTCGTCT 59.965 50.0 0.00 0.0 32.53 4.18 F
2734 2798 1.514678 GGCATGCACTGAACGTCCAA 61.515 55.0 21.36 0.0 0.00 3.53 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1968 2010 0.378962 TAGTGTGGCGTGCAACAAAC 59.621 50.000 3.12 0.0 35.74 2.93 R
2938 3002 0.764890 GCCACCCTGCACCATAGATA 59.235 55.000 0.00 0.0 0.00 1.98 R
4482 4586 1.493022 TGTTTGAGTACAGGGTTGGCT 59.507 47.619 0.00 0.0 0.00 4.75 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
127 128 9.381033 CATCTACAGAAGAATCAACAGAAGAAT 57.619 33.333 0.00 0.00 37.89 2.40
131 132 7.378966 ACAGAAGAATCAACAGAAGAATACGA 58.621 34.615 0.00 0.00 0.00 3.43
186 188 1.956477 ACTGCAAGGAACACAATGGTC 59.044 47.619 0.00 0.00 39.30 4.02
189 191 2.964464 TGCAAGGAACACAATGGTCATT 59.036 40.909 0.00 0.00 38.78 2.57
211 213 7.726291 TCATTAAGAACTAATCCCACAAAACCA 59.274 33.333 0.00 0.00 0.00 3.67
252 254 0.104620 AGTGTTGGTAGTCCCCACCT 60.105 55.000 0.00 0.00 36.11 4.00
271 273 5.374071 CACCTGTAACTACCCCATAAATCC 58.626 45.833 0.00 0.00 0.00 3.01
465 468 0.249531 TAACCACGCGACAAGAGCAA 60.250 50.000 15.93 0.00 34.19 3.91
535 538 1.668151 GTTCGCCCACACCAGAGAC 60.668 63.158 0.00 0.00 0.00 3.36
651 661 4.922026 ACGGGAAAAGCCGTGCGT 62.922 61.111 0.00 0.00 41.24 5.24
785 795 8.712363 TCTCAATTAGTGATTTCGAAAACTCAG 58.288 33.333 15.66 5.81 35.07 3.35
789 799 2.814336 GTGATTTCGAAAACTCAGGCCT 59.186 45.455 15.66 0.00 0.00 5.19
808 818 1.691976 CTATCACAATGGACGGGCCTA 59.308 52.381 0.84 0.00 37.63 3.93
846 856 1.065418 CCCGAACTTGAGCCCAGTTAT 60.065 52.381 0.00 0.00 0.00 1.89
876 886 2.484417 CCATCTTCGTCCTCATTCCCAG 60.484 54.545 0.00 0.00 0.00 4.45
879 889 3.643237 TCTTCGTCCTCATTCCCAGTAT 58.357 45.455 0.00 0.00 0.00 2.12
966 976 3.692406 GCCGTCGAACCCACTCCT 61.692 66.667 0.00 0.00 0.00 3.69
1083 1093 0.110688 CCATCAACAACAGCGACGTG 60.111 55.000 0.00 0.00 0.00 4.49
1202 1212 3.121030 CTCGCCTCCCGTTGCTTG 61.121 66.667 0.00 0.00 38.35 4.01
1345 1359 0.104855 TTAGCGCGCTGGATCTGATT 59.895 50.000 41.85 15.79 0.00 2.57
1347 1361 1.010350 GCGCGCTGGATCTGATTTG 60.010 57.895 26.67 0.00 0.00 2.32
1373 1387 2.100418 CTCTGATCTGTTCCTGATCGCA 59.900 50.000 0.00 0.00 40.23 5.10
1401 1416 0.541863 GGTTGGATCTGGGATGTCGT 59.458 55.000 0.00 0.00 0.00 4.34
1404 1419 0.617535 TGGATCTGGGATGTCGTGGT 60.618 55.000 0.00 0.00 0.00 4.16
1409 1424 2.111999 CTGGGATGTCGTGGTGTGGT 62.112 60.000 0.00 0.00 0.00 4.16
1417 1432 1.816835 GTCGTGGTGTGGTCAGATCTA 59.183 52.381 0.00 0.00 0.00 1.98
1431 1446 3.250280 TCAGATCTATCGCGGTTACAGTC 59.750 47.826 6.13 0.00 0.00 3.51
1472 1487 0.394352 AGATCCGGTGGCACCATTTC 60.394 55.000 34.11 24.86 38.47 2.17
1519 1534 7.598869 TCGCGAGAATAGAATTTATACATGCTT 59.401 33.333 3.71 0.00 37.03 3.91
1628 1652 4.783764 AAGCTGCACCACCTTTAATTAC 57.216 40.909 1.02 0.00 0.00 1.89
1704 1729 4.163458 TCAGACCTGCCGTTTTATAAGGAT 59.837 41.667 0.00 0.00 0.00 3.24
1767 1793 1.448985 TAGCAACGCCCAAATGACTC 58.551 50.000 0.00 0.00 0.00 3.36
1768 1794 1.154225 GCAACGCCCAAATGACTCG 60.154 57.895 0.00 0.00 0.00 4.18
1769 1795 1.852067 GCAACGCCCAAATGACTCGT 61.852 55.000 0.00 0.00 34.63 4.18
1770 1796 0.165944 CAACGCCCAAATGACTCGTC 59.834 55.000 0.00 0.00 32.53 4.20
1771 1797 0.034896 AACGCCCAAATGACTCGTCT 59.965 50.000 0.00 0.00 32.53 4.18
1809 1835 2.875933 TGCTGTATTTATGGCGTTAGGC 59.124 45.455 0.00 0.00 44.11 3.93
1823 1849 4.003648 GCGTTAGGCCAGATAATATTGCT 58.996 43.478 5.01 0.00 34.80 3.91
1847 1886 3.435169 GGGGTGGTTCTTATCATTCCTCC 60.435 52.174 0.00 0.00 0.00 4.30
1864 1905 7.396907 TCATTCCTCCATCAGAAGCAAAATAAA 59.603 33.333 0.00 0.00 0.00 1.40
2045 2104 3.606687 GGTAATGTGTGTTACCCCTCTG 58.393 50.000 4.82 0.00 45.08 3.35
2269 2328 3.579151 GGACTCTGGACCTGTTAGTTTCT 59.421 47.826 0.00 0.00 0.00 2.52
2320 2379 6.698766 CAGCCTTCCATTAGTGAATTTATTGC 59.301 38.462 0.00 0.00 0.00 3.56
2330 2389 5.609423 AGTGAATTTATTGCTGCAAAACCA 58.391 33.333 20.06 8.93 0.00 3.67
2361 2420 6.077993 AGGGTGAACATCAGTATATGCTCTA 58.922 40.000 0.00 0.00 0.00 2.43
2629 2693 3.507162 TGCTTCTTCCAAGATCCACAA 57.493 42.857 0.00 0.00 34.49 3.33
2683 2747 3.750130 AGACTGCTGCATACTTGAAAGTG 59.250 43.478 1.31 0.00 40.07 3.16
2734 2798 1.514678 GGCATGCACTGAACGTCCAA 61.515 55.000 21.36 0.00 0.00 3.53
2911 2975 9.313118 GTGAAGTGTTGAAATTTTATTGGTCTT 57.687 29.630 0.00 0.00 0.00 3.01
2917 2981 9.844257 TGTTGAAATTTTATTGGTCTTTGGAAT 57.156 25.926 0.00 0.00 0.00 3.01
3017 3081 4.216411 TGCTGAAAAGTACCCTATGACC 57.784 45.455 0.00 0.00 0.00 4.02
3189 3278 6.899393 AGGATGCAAGACAAATACTCAAAA 57.101 33.333 0.00 0.00 0.00 2.44
3303 3392 8.188799 CACGATACTTCAGGTAAGAATCTAACA 58.811 37.037 0.00 0.00 38.67 2.41
3355 3444 2.284190 GATGCTCTTTAGGTGACAGGC 58.716 52.381 0.00 0.00 0.00 4.85
3356 3445 1.055849 TGCTCTTTAGGTGACAGGCA 58.944 50.000 0.00 0.00 0.00 4.75
3431 3520 4.932146 AGTCGAAGTGGTTTTGGAAAATG 58.068 39.130 0.00 0.00 0.00 2.32
3454 3543 4.261867 GCTATTTGATGGATGCATGCAGAA 60.262 41.667 26.69 18.88 0.00 3.02
3508 3599 9.581099 AAGCGGGACATTAATTAATTAACAAAG 57.419 29.630 20.21 13.56 35.31 2.77
3601 3692 5.927281 TGTGTTAAGGGTAGAGGTACATC 57.073 43.478 0.00 0.00 0.00 3.06
3631 3722 6.922247 TCCTAGAAGTTCATGACTAGTACG 57.078 41.667 13.94 3.37 37.72 3.67
3653 3744 5.629849 ACGTACAAAGAGTTCAATCGAGAAG 59.370 40.000 0.00 0.00 0.00 2.85
3835 3927 1.747355 CAGCTAGCAAAAGGACCATGG 59.253 52.381 18.83 11.19 0.00 3.66
3879 3971 5.163581 GCGTAAAGAGTAGGACCACAGAATA 60.164 44.000 0.00 0.00 0.00 1.75
3939 4036 1.383456 TTGCCAGTCTTTTGCAGCGT 61.383 50.000 0.00 0.00 36.21 5.07
4035 4133 4.022762 CGGACATATCCTGACTAGGTCTTG 60.023 50.000 0.00 0.00 43.73 3.02
4080 4178 4.162592 CTGTGTTCTGCAGCCCAA 57.837 55.556 9.47 0.00 0.00 4.12
4103 4201 1.909302 GTTCTTCCACCTGGATCCAGA 59.091 52.381 38.37 19.32 46.30 3.86
4106 4204 2.986019 TCTTCCACCTGGATCCAGAAAA 59.014 45.455 38.37 24.16 46.30 2.29
4121 4219 3.995048 CCAGAAAACCTCTCTACGTTTCC 59.005 47.826 0.00 0.00 31.09 3.13
4135 4233 4.546829 ACGTTTCCTAGATGCTACCAAA 57.453 40.909 0.00 0.00 0.00 3.28
4212 4311 2.416972 CCAGGGTTCAGACGCTTACTAC 60.417 54.545 0.00 0.00 45.75 2.73
4217 4316 4.388165 GGGTTCAGACGCTTACTACTTTTC 59.612 45.833 0.00 0.00 35.94 2.29
4219 4318 5.345472 GGTTCAGACGCTTACTACTTTTCTC 59.655 44.000 0.00 0.00 0.00 2.87
4265 4368 9.286946 CTTGCTTCTAATTTCTTTCTATGCTTG 57.713 33.333 0.00 0.00 0.00 4.01
4369 4472 1.302511 AAGCCGTCGCCTGAAACAT 60.303 52.632 0.00 0.00 34.57 2.71
4453 4556 6.183360 ACAGAGTGAATTGTATTGGTTTTGCA 60.183 34.615 0.00 0.00 0.00 4.08
4592 4696 4.096382 GGTATCTTGTTATGTTGTGCTGGG 59.904 45.833 0.00 0.00 0.00 4.45
4593 4697 1.885887 TCTTGTTATGTTGTGCTGGGC 59.114 47.619 0.00 0.00 0.00 5.36
4594 4698 1.888512 CTTGTTATGTTGTGCTGGGCT 59.111 47.619 0.00 0.00 0.00 5.19
4595 4699 1.246649 TGTTATGTTGTGCTGGGCTG 58.753 50.000 0.00 0.00 0.00 4.85
4596 4700 0.527565 GTTATGTTGTGCTGGGCTGG 59.472 55.000 0.00 0.00 0.00 4.85
4613 4718 0.618458 TGGCTAATTCTTCCGCCAGT 59.382 50.000 0.00 0.00 46.75 4.00
4746 4857 2.072990 GCGTTCAGCTATACGTTTGC 57.927 50.000 17.69 0.00 44.04 3.68
4852 4966 7.588497 AGTAATTCTCCATGCCCTTTAAATC 57.412 36.000 0.00 0.00 0.00 2.17
4853 4967 7.125391 AGTAATTCTCCATGCCCTTTAAATCA 58.875 34.615 0.00 0.00 0.00 2.57
4857 4971 4.706476 TCTCCATGCCCTTTAAATCACTTG 59.294 41.667 0.00 0.00 0.00 3.16
4859 4973 4.837860 TCCATGCCCTTTAAATCACTTGTT 59.162 37.500 0.00 0.00 0.00 2.83
4861 4975 5.639082 CCATGCCCTTTAAATCACTTGTTTC 59.361 40.000 0.00 0.00 0.00 2.78
4863 4977 6.084326 TGCCCTTTAAATCACTTGTTTCTC 57.916 37.500 0.00 0.00 0.00 2.87
4864 4978 5.154222 GCCCTTTAAATCACTTGTTTCTCG 58.846 41.667 0.00 0.00 0.00 4.04
4865 4979 5.278315 GCCCTTTAAATCACTTGTTTCTCGT 60.278 40.000 0.00 0.00 0.00 4.18
4866 4980 6.734871 GCCCTTTAAATCACTTGTTTCTCGTT 60.735 38.462 0.00 0.00 0.00 3.85
4869 4983 7.376072 CCTTTAAATCACTTGTTTCTCGTTGAC 59.624 37.037 0.00 0.00 0.00 3.18
4870 4984 4.452890 AATCACTTGTTTCTCGTTGACG 57.547 40.909 0.00 0.00 41.45 4.35
4883 4997 4.618338 TCGTTGACGATAAAGTTTGACG 57.382 40.909 1.52 12.35 44.22 4.35
4884 4998 4.289342 TCGTTGACGATAAAGTTTGACGA 58.711 39.130 18.13 10.35 44.22 4.20
4885 4999 4.739228 TCGTTGACGATAAAGTTTGACGAA 59.261 37.500 18.13 7.40 44.22 3.85
4886 5000 5.231779 TCGTTGACGATAAAGTTTGACGAAA 59.768 36.000 18.13 11.34 44.22 3.46
4887 5001 5.897518 CGTTGACGATAAAGTTTGACGAAAA 59.102 36.000 18.13 11.10 43.02 2.29
4888 5002 6.408611 CGTTGACGATAAAGTTTGACGAAAAA 59.591 34.615 18.13 9.40 43.02 1.94
4889 5003 7.355354 CGTTGACGATAAAGTTTGACGAAAAAG 60.355 37.037 18.13 11.71 43.02 2.27
4890 5004 7.007313 TGACGATAAAGTTTGACGAAAAAGT 57.993 32.000 18.13 0.00 0.00 2.66
4891 5005 7.465989 TGACGATAAAGTTTGACGAAAAAGTT 58.534 30.769 18.13 0.00 34.82 2.66
4892 5006 7.964011 TGACGATAAAGTTTGACGAAAAAGTTT 59.036 29.630 18.13 17.85 42.49 2.66
4893 5007 8.099746 ACGATAAAGTTTGACGAAAAAGTTTG 57.900 30.769 20.57 12.24 40.90 2.93
4907 5021 3.814504 AAGTTTGATGGTGATCCCTGT 57.185 42.857 0.00 0.00 0.00 4.00
4919 5033 3.372206 GTGATCCCTGTGAATTTCGTCAG 59.628 47.826 11.81 11.81 0.00 3.51
4958 5072 1.772453 TCGGGTTTCTTTCTTCACCCT 59.228 47.619 4.74 0.00 46.14 4.34
5025 5139 3.606687 TCCCTCGGAAAAATAAGACTGC 58.393 45.455 0.00 0.00 0.00 4.40
5050 5164 2.373169 TCTGCACTTCCAACTCCAGATT 59.627 45.455 0.00 0.00 0.00 2.40
5053 5167 3.072330 TGCACTTCCAACTCCAGATTGTA 59.928 43.478 0.00 0.00 0.00 2.41
5054 5168 4.263462 TGCACTTCCAACTCCAGATTGTAT 60.263 41.667 0.00 0.00 0.00 2.29
5089 5203 3.435186 GCCTCTTGCCGTCTTGCC 61.435 66.667 0.00 0.00 0.00 4.52
5099 5213 1.941325 CCGTCTTGCCCTAGATCAAC 58.059 55.000 0.00 0.00 0.00 3.18
5111 5225 3.181471 CCTAGATCAACGTCATGGCTTCT 60.181 47.826 0.00 0.00 0.00 2.85
5150 5290 4.722700 TTTGCTCTGCCCGGCCTC 62.723 66.667 7.03 0.00 0.00 4.70
5154 5294 4.479993 CTCTGCCCGGCCTCCTTG 62.480 72.222 7.03 0.00 0.00 3.61
5156 5296 4.785453 CTGCCCGGCCTCCTTGAC 62.785 72.222 7.03 0.00 0.00 3.18
5161 5301 2.125512 CGGCCTCCTTGACGGAAG 60.126 66.667 0.00 0.00 42.53 3.46
5181 5321 9.238368 ACGGAAGTTTGATAAATTAATTCTCCA 57.762 29.630 0.10 0.00 46.40 3.86
5185 5325 9.822185 AAGTTTGATAAATTAATTCTCCATGCC 57.178 29.630 0.10 0.00 0.00 4.40
5186 5326 9.205513 AGTTTGATAAATTAATTCTCCATGCCT 57.794 29.630 0.10 0.00 0.00 4.75
5187 5327 9.822185 GTTTGATAAATTAATTCTCCATGCCTT 57.178 29.630 0.10 0.00 0.00 4.35
5194 5334 9.448438 AAATTAATTCTCCATGCCTTTTAAACC 57.552 29.630 0.10 0.00 0.00 3.27
5195 5335 7.790782 TTAATTCTCCATGCCTTTTAAACCT 57.209 32.000 0.00 0.00 0.00 3.50
5196 5336 6.686484 AATTCTCCATGCCTTTTAAACCTT 57.314 33.333 0.00 0.00 0.00 3.50
5197 5337 6.686484 ATTCTCCATGCCTTTTAAACCTTT 57.314 33.333 0.00 0.00 0.00 3.11
5198 5338 6.493189 TTCTCCATGCCTTTTAAACCTTTT 57.507 33.333 0.00 0.00 0.00 2.27
5199 5339 6.096673 TCTCCATGCCTTTTAAACCTTTTC 57.903 37.500 0.00 0.00 0.00 2.29
5200 5340 5.838521 TCTCCATGCCTTTTAAACCTTTTCT 59.161 36.000 0.00 0.00 0.00 2.52
5201 5341 6.326323 TCTCCATGCCTTTTAAACCTTTTCTT 59.674 34.615 0.00 0.00 0.00 2.52
5202 5342 6.894682 TCCATGCCTTTTAAACCTTTTCTTT 58.105 32.000 0.00 0.00 0.00 2.52
5203 5343 6.765512 TCCATGCCTTTTAAACCTTTTCTTTG 59.234 34.615 0.00 0.00 0.00 2.77
5204 5344 6.765512 CCATGCCTTTTAAACCTTTTCTTTGA 59.234 34.615 0.00 0.00 0.00 2.69
5205 5345 7.281999 CCATGCCTTTTAAACCTTTTCTTTGAA 59.718 33.333 0.00 0.00 0.00 2.69
5206 5346 8.672815 CATGCCTTTTAAACCTTTTCTTTGAAA 58.327 29.630 0.00 0.00 0.00 2.69
5207 5347 8.035165 TGCCTTTTAAACCTTTTCTTTGAAAC 57.965 30.769 0.00 0.00 0.00 2.78
5208 5348 7.119992 TGCCTTTTAAACCTTTTCTTTGAAACC 59.880 33.333 0.00 0.00 0.00 3.27
5209 5349 7.675403 GCCTTTTAAACCTTTTCTTTGAAACCG 60.675 37.037 0.00 0.00 0.00 4.44
5210 5350 7.546316 CCTTTTAAACCTTTTCTTTGAAACCGA 59.454 33.333 0.00 0.00 0.00 4.69
5211 5351 9.093970 CTTTTAAACCTTTTCTTTGAAACCGAT 57.906 29.630 0.00 0.00 0.00 4.18
5212 5352 7.995463 TTAAACCTTTTCTTTGAAACCGATG 57.005 32.000 0.00 0.00 0.00 3.84
5213 5353 4.584327 ACCTTTTCTTTGAAACCGATGG 57.416 40.909 0.00 0.00 0.00 3.51
5214 5354 3.958147 ACCTTTTCTTTGAAACCGATGGT 59.042 39.130 0.00 0.00 37.65 3.55
5215 5355 4.202111 ACCTTTTCTTTGAAACCGATGGTG 60.202 41.667 0.00 0.00 35.34 4.17
5216 5356 4.037446 CCTTTTCTTTGAAACCGATGGTGA 59.963 41.667 0.00 0.00 35.34 4.02
5217 5357 5.278957 CCTTTTCTTTGAAACCGATGGTGAT 60.279 40.000 0.00 0.00 35.34 3.06
5218 5358 5.371115 TTTCTTTGAAACCGATGGTGATC 57.629 39.130 0.00 0.00 35.34 2.92
5219 5359 4.286297 TCTTTGAAACCGATGGTGATCT 57.714 40.909 0.00 0.00 35.34 2.75
5220 5360 4.253685 TCTTTGAAACCGATGGTGATCTC 58.746 43.478 0.00 0.00 35.34 2.75
5221 5361 3.981071 TTGAAACCGATGGTGATCTCT 57.019 42.857 0.00 0.00 35.34 3.10
5222 5362 5.186992 TCTTTGAAACCGATGGTGATCTCTA 59.813 40.000 0.00 0.00 35.34 2.43
5223 5363 4.386867 TGAAACCGATGGTGATCTCTAC 57.613 45.455 0.00 0.00 35.34 2.59
5224 5364 3.181490 TGAAACCGATGGTGATCTCTACG 60.181 47.826 0.00 0.00 35.34 3.51
5225 5365 2.343484 ACCGATGGTGATCTCTACGA 57.657 50.000 0.00 0.00 32.98 3.43
5226 5366 2.651455 ACCGATGGTGATCTCTACGAA 58.349 47.619 0.00 0.00 32.98 3.85
5227 5367 3.223435 ACCGATGGTGATCTCTACGAAT 58.777 45.455 0.00 0.00 32.98 3.34
5228 5368 3.637229 ACCGATGGTGATCTCTACGAATT 59.363 43.478 0.00 0.00 32.98 2.17
5229 5369 4.099573 ACCGATGGTGATCTCTACGAATTT 59.900 41.667 0.00 0.00 32.98 1.82
5230 5370 5.050490 CCGATGGTGATCTCTACGAATTTT 58.950 41.667 0.00 0.00 0.00 1.82
5231 5371 5.050769 CCGATGGTGATCTCTACGAATTTTG 60.051 44.000 0.00 0.00 0.00 2.44
5232 5372 5.520288 CGATGGTGATCTCTACGAATTTTGT 59.480 40.000 0.00 0.00 0.00 2.83
5233 5373 6.036083 CGATGGTGATCTCTACGAATTTTGTT 59.964 38.462 0.00 0.00 0.00 2.83
5234 5374 6.480524 TGGTGATCTCTACGAATTTTGTTG 57.519 37.500 0.00 0.00 0.00 3.33
5235 5375 5.411361 TGGTGATCTCTACGAATTTTGTTGG 59.589 40.000 0.00 0.00 0.00 3.77
5236 5376 5.324697 GTGATCTCTACGAATTTTGTTGGC 58.675 41.667 0.00 0.00 0.00 4.52
5237 5377 4.092821 TGATCTCTACGAATTTTGTTGGCG 59.907 41.667 0.00 0.00 0.00 5.69
5238 5378 2.739913 TCTCTACGAATTTTGTTGGCGG 59.260 45.455 0.00 0.00 0.00 6.13
5239 5379 1.807742 TCTACGAATTTTGTTGGCGGG 59.192 47.619 0.00 0.00 0.00 6.13
5240 5380 0.241481 TACGAATTTTGTTGGCGGGC 59.759 50.000 0.00 0.00 0.00 6.13
5241 5381 2.085844 CGAATTTTGTTGGCGGGCG 61.086 57.895 0.00 0.00 0.00 6.13
5242 5382 1.006688 GAATTTTGTTGGCGGGCGT 60.007 52.632 0.00 0.00 0.00 5.68
5243 5383 0.598942 GAATTTTGTTGGCGGGCGTT 60.599 50.000 0.00 0.00 0.00 4.84
5244 5384 0.598942 AATTTTGTTGGCGGGCGTTC 60.599 50.000 0.00 0.00 0.00 3.95
5245 5385 1.460273 ATTTTGTTGGCGGGCGTTCT 61.460 50.000 0.00 0.00 0.00 3.01
5246 5386 1.668101 TTTTGTTGGCGGGCGTTCTT 61.668 50.000 0.00 0.00 0.00 2.52
5247 5387 2.065906 TTTGTTGGCGGGCGTTCTTC 62.066 55.000 0.00 0.00 0.00 2.87
5248 5388 2.975799 GTTGGCGGGCGTTCTTCA 60.976 61.111 0.00 0.00 0.00 3.02
5249 5389 2.203224 TTGGCGGGCGTTCTTCAA 60.203 55.556 0.00 0.00 0.00 2.69
5250 5390 1.824329 TTGGCGGGCGTTCTTCAAA 60.824 52.632 0.00 0.00 0.00 2.69
5251 5391 1.384989 TTGGCGGGCGTTCTTCAAAA 61.385 50.000 0.00 0.00 0.00 2.44
5252 5392 1.175983 TGGCGGGCGTTCTTCAAAAT 61.176 50.000 0.00 0.00 0.00 1.82
5253 5393 0.806241 GGCGGGCGTTCTTCAAAATA 59.194 50.000 0.00 0.00 0.00 1.40
5254 5394 1.404035 GGCGGGCGTTCTTCAAAATAT 59.596 47.619 0.00 0.00 0.00 1.28
5255 5395 2.540973 GGCGGGCGTTCTTCAAAATATC 60.541 50.000 0.00 0.00 0.00 1.63
5256 5396 2.096819 GCGGGCGTTCTTCAAAATATCA 59.903 45.455 0.00 0.00 0.00 2.15
5257 5397 3.788797 GCGGGCGTTCTTCAAAATATCAG 60.789 47.826 0.00 0.00 0.00 2.90
5258 5398 3.242739 CGGGCGTTCTTCAAAATATCAGG 60.243 47.826 0.00 0.00 0.00 3.86
5259 5399 3.694566 GGGCGTTCTTCAAAATATCAGGT 59.305 43.478 0.00 0.00 0.00 4.00
5260 5400 4.157840 GGGCGTTCTTCAAAATATCAGGTT 59.842 41.667 0.00 0.00 0.00 3.50
5261 5401 5.336451 GGGCGTTCTTCAAAATATCAGGTTT 60.336 40.000 0.00 0.00 0.00 3.27
5262 5402 5.800438 GGCGTTCTTCAAAATATCAGGTTTC 59.200 40.000 0.00 0.00 0.00 2.78
5263 5403 6.349363 GGCGTTCTTCAAAATATCAGGTTTCT 60.349 38.462 0.00 0.00 0.00 2.52
5264 5404 7.084486 GCGTTCTTCAAAATATCAGGTTTCTT 58.916 34.615 0.00 0.00 0.00 2.52
5265 5405 7.271438 GCGTTCTTCAAAATATCAGGTTTCTTC 59.729 37.037 0.00 0.00 0.00 2.87
5266 5406 7.750903 CGTTCTTCAAAATATCAGGTTTCTTCC 59.249 37.037 0.00 0.00 0.00 3.46
5267 5407 8.797438 GTTCTTCAAAATATCAGGTTTCTTCCT 58.203 33.333 0.00 0.00 38.51 3.36
5268 5408 8.940397 TCTTCAAAATATCAGGTTTCTTCCTT 57.060 30.769 0.00 0.00 35.37 3.36
5269 5409 9.367160 TCTTCAAAATATCAGGTTTCTTCCTTT 57.633 29.630 0.00 0.00 35.37 3.11
5273 5413 9.639601 CAAAATATCAGGTTTCTTCCTTTAACC 57.360 33.333 0.00 0.00 41.27 2.85
5275 5415 8.809468 AATATCAGGTTTCTTCCTTTAACCTC 57.191 34.615 0.00 0.00 46.58 3.85
5276 5416 4.981812 TCAGGTTTCTTCCTTTAACCTCC 58.018 43.478 0.00 0.00 46.58 4.30
5277 5417 3.751698 CAGGTTTCTTCCTTTAACCTCCG 59.248 47.826 0.00 0.00 46.58 4.63
5278 5418 3.649502 AGGTTTCTTCCTTTAACCTCCGA 59.350 43.478 0.00 0.00 46.58 4.55
5279 5419 4.001652 GGTTTCTTCCTTTAACCTCCGAG 58.998 47.826 0.00 0.00 38.58 4.63
5280 5420 4.262765 GGTTTCTTCCTTTAACCTCCGAGA 60.263 45.833 0.00 0.00 38.58 4.04
5281 5421 5.303165 GTTTCTTCCTTTAACCTCCGAGAA 58.697 41.667 0.00 0.00 0.00 2.87
5282 5422 4.532314 TCTTCCTTTAACCTCCGAGAAC 57.468 45.455 0.00 0.00 0.00 3.01
5283 5423 3.899360 TCTTCCTTTAACCTCCGAGAACA 59.101 43.478 0.00 0.00 0.00 3.18
5284 5424 4.345837 TCTTCCTTTAACCTCCGAGAACAA 59.654 41.667 0.00 0.00 0.00 2.83
5285 5425 4.267349 TCCTTTAACCTCCGAGAACAAG 57.733 45.455 0.00 0.00 0.00 3.16
5286 5426 3.007614 TCCTTTAACCTCCGAGAACAAGG 59.992 47.826 0.00 3.57 36.21 3.61
5287 5427 3.244457 CCTTTAACCTCCGAGAACAAGGT 60.244 47.826 0.00 0.00 45.32 3.50
5288 5428 3.396260 TTAACCTCCGAGAACAAGGTG 57.604 47.619 0.00 0.00 42.58 4.00
5289 5429 1.129058 AACCTCCGAGAACAAGGTGT 58.871 50.000 0.00 0.00 42.58 4.16
5290 5430 2.005370 ACCTCCGAGAACAAGGTGTA 57.995 50.000 0.00 0.00 41.83 2.90
5291 5431 2.322658 ACCTCCGAGAACAAGGTGTAA 58.677 47.619 0.00 0.00 41.83 2.41
5292 5432 2.299297 ACCTCCGAGAACAAGGTGTAAG 59.701 50.000 0.00 0.00 41.83 2.34
5293 5433 2.561419 CCTCCGAGAACAAGGTGTAAGA 59.439 50.000 0.00 0.00 0.00 2.10
5294 5434 3.006537 CCTCCGAGAACAAGGTGTAAGAA 59.993 47.826 0.00 0.00 0.00 2.52
5295 5435 4.502604 CCTCCGAGAACAAGGTGTAAGAAA 60.503 45.833 0.00 0.00 0.00 2.52
5296 5436 5.026038 TCCGAGAACAAGGTGTAAGAAAA 57.974 39.130 0.00 0.00 0.00 2.29
5297 5437 5.617252 TCCGAGAACAAGGTGTAAGAAAAT 58.383 37.500 0.00 0.00 0.00 1.82
5298 5438 5.699458 TCCGAGAACAAGGTGTAAGAAAATC 59.301 40.000 0.00 0.00 0.00 2.17
5299 5439 5.106673 CCGAGAACAAGGTGTAAGAAAATCC 60.107 44.000 0.00 0.00 0.00 3.01
5300 5440 5.701290 CGAGAACAAGGTGTAAGAAAATCCT 59.299 40.000 0.00 0.00 0.00 3.24
5301 5441 6.204882 CGAGAACAAGGTGTAAGAAAATCCTT 59.795 38.462 0.00 0.00 38.79 3.36
5302 5442 7.255139 CGAGAACAAGGTGTAAGAAAATCCTTT 60.255 37.037 0.00 0.00 36.52 3.11
5303 5443 7.716612 AGAACAAGGTGTAAGAAAATCCTTTG 58.283 34.615 0.00 0.00 36.52 2.77
5304 5444 7.559897 AGAACAAGGTGTAAGAAAATCCTTTGA 59.440 33.333 0.00 0.00 36.52 2.69
5305 5445 7.839680 ACAAGGTGTAAGAAAATCCTTTGAT 57.160 32.000 0.00 0.00 36.52 2.57
5306 5446 8.934023 ACAAGGTGTAAGAAAATCCTTTGATA 57.066 30.769 0.00 0.00 36.52 2.15
5307 5447 9.362151 ACAAGGTGTAAGAAAATCCTTTGATAA 57.638 29.630 0.00 0.00 36.52 1.75
5308 5448 9.626045 CAAGGTGTAAGAAAATCCTTTGATAAC 57.374 33.333 0.00 0.00 36.52 1.89
5309 5449 8.349568 AGGTGTAAGAAAATCCTTTGATAACC 57.650 34.615 0.00 0.00 0.00 2.85
5310 5450 7.396339 AGGTGTAAGAAAATCCTTTGATAACCC 59.604 37.037 0.00 0.00 0.00 4.11
5311 5451 7.248437 GTGTAAGAAAATCCTTTGATAACCCG 58.752 38.462 0.00 0.00 0.00 5.28
5312 5452 6.943718 TGTAAGAAAATCCTTTGATAACCCGT 59.056 34.615 0.00 0.00 0.00 5.28
5313 5453 6.911250 AAGAAAATCCTTTGATAACCCGTT 57.089 33.333 0.00 0.00 0.00 4.44
5314 5454 6.510879 AGAAAATCCTTTGATAACCCGTTC 57.489 37.500 0.00 0.00 0.00 3.95
5315 5455 5.417894 AGAAAATCCTTTGATAACCCGTTCC 59.582 40.000 0.00 0.00 0.00 3.62
5316 5456 2.793288 TCCTTTGATAACCCGTTCCC 57.207 50.000 0.00 0.00 0.00 3.97
5317 5457 2.271777 TCCTTTGATAACCCGTTCCCT 58.728 47.619 0.00 0.00 0.00 4.20
5318 5458 2.237893 TCCTTTGATAACCCGTTCCCTC 59.762 50.000 0.00 0.00 0.00 4.30
5319 5459 2.640184 CTTTGATAACCCGTTCCCTCC 58.360 52.381 0.00 0.00 0.00 4.30
5320 5460 0.538118 TTGATAACCCGTTCCCTCCG 59.462 55.000 0.00 0.00 0.00 4.63
5321 5461 0.324552 TGATAACCCGTTCCCTCCGA 60.325 55.000 0.00 0.00 0.00 4.55
5322 5462 0.826062 GATAACCCGTTCCCTCCGAA 59.174 55.000 0.00 0.00 0.00 4.30
5323 5463 1.207811 GATAACCCGTTCCCTCCGAAA 59.792 52.381 0.00 0.00 30.39 3.46
5324 5464 1.055040 TAACCCGTTCCCTCCGAAAA 58.945 50.000 0.00 0.00 30.39 2.29
5325 5465 0.183252 AACCCGTTCCCTCCGAAAAA 59.817 50.000 0.00 0.00 30.39 1.94
5326 5466 0.402887 ACCCGTTCCCTCCGAAAAAT 59.597 50.000 0.00 0.00 30.39 1.82
5327 5467 1.629861 ACCCGTTCCCTCCGAAAAATA 59.370 47.619 0.00 0.00 30.39 1.40
5328 5468 2.285977 CCCGTTCCCTCCGAAAAATAG 58.714 52.381 0.00 0.00 30.39 1.73
5329 5469 2.285977 CCGTTCCCTCCGAAAAATAGG 58.714 52.381 0.00 0.00 30.39 2.57
5330 5470 2.093341 CCGTTCCCTCCGAAAAATAGGA 60.093 50.000 0.00 0.00 31.64 2.94
5331 5471 2.934553 CGTTCCCTCCGAAAAATAGGAC 59.065 50.000 0.00 0.00 31.64 3.85
5332 5472 3.369157 CGTTCCCTCCGAAAAATAGGACT 60.369 47.826 0.00 0.00 31.64 3.85
5333 5473 3.906720 TCCCTCCGAAAAATAGGACTG 57.093 47.619 0.00 0.00 31.64 3.51
5334 5474 3.446968 TCCCTCCGAAAAATAGGACTGA 58.553 45.455 0.00 0.00 31.64 3.41
5335 5475 4.037927 TCCCTCCGAAAAATAGGACTGAT 58.962 43.478 0.00 0.00 31.64 2.90
5336 5476 5.213519 TCCCTCCGAAAAATAGGACTGATA 58.786 41.667 0.00 0.00 31.64 2.15
5337 5477 5.664006 TCCCTCCGAAAAATAGGACTGATAA 59.336 40.000 0.00 0.00 31.64 1.75
5338 5478 6.329197 TCCCTCCGAAAAATAGGACTGATAAT 59.671 38.462 0.00 0.00 31.64 1.28
5339 5479 6.651225 CCCTCCGAAAAATAGGACTGATAATC 59.349 42.308 0.00 0.00 31.64 1.75
5340 5480 7.445945 CCTCCGAAAAATAGGACTGATAATCT 58.554 38.462 0.00 0.00 31.64 2.40
5341 5481 7.386299 CCTCCGAAAAATAGGACTGATAATCTG 59.614 40.741 0.00 0.00 31.64 2.90
5342 5482 6.706270 TCCGAAAAATAGGACTGATAATCTGC 59.294 38.462 0.00 0.00 0.00 4.26
5343 5483 6.483307 CCGAAAAATAGGACTGATAATCTGCA 59.517 38.462 0.00 0.00 0.00 4.41
5344 5484 7.348201 CGAAAAATAGGACTGATAATCTGCAC 58.652 38.462 0.00 0.00 0.00 4.57
5345 5485 7.225538 CGAAAAATAGGACTGATAATCTGCACT 59.774 37.037 0.00 0.00 0.00 4.40
5346 5486 8.814038 AAAAATAGGACTGATAATCTGCACTT 57.186 30.769 0.00 0.00 0.00 3.16
5347 5487 8.443953 AAAATAGGACTGATAATCTGCACTTC 57.556 34.615 0.00 0.00 0.00 3.01
5348 5488 6.737720 ATAGGACTGATAATCTGCACTTCA 57.262 37.500 0.00 0.00 0.00 3.02
5349 5489 5.426689 AGGACTGATAATCTGCACTTCAA 57.573 39.130 0.00 0.00 0.00 2.69
5350 5490 5.181748 AGGACTGATAATCTGCACTTCAAC 58.818 41.667 0.00 0.00 0.00 3.18
5351 5491 5.046014 AGGACTGATAATCTGCACTTCAACT 60.046 40.000 0.00 0.00 0.00 3.16
5352 5492 6.155221 AGGACTGATAATCTGCACTTCAACTA 59.845 38.462 0.00 0.00 0.00 2.24
5353 5493 6.989169 GGACTGATAATCTGCACTTCAACTAT 59.011 38.462 0.00 0.00 0.00 2.12
5354 5494 8.144478 GGACTGATAATCTGCACTTCAACTATA 58.856 37.037 0.00 0.00 0.00 1.31
5355 5495 9.190858 GACTGATAATCTGCACTTCAACTATAG 57.809 37.037 0.00 0.00 0.00 1.31
5356 5496 8.918116 ACTGATAATCTGCACTTCAACTATAGA 58.082 33.333 6.78 0.00 0.00 1.98
5357 5497 9.190858 CTGATAATCTGCACTTCAACTATAGAC 57.809 37.037 6.78 0.00 0.00 2.59
5358 5498 8.144478 TGATAATCTGCACTTCAACTATAGACC 58.856 37.037 6.78 0.00 0.00 3.85
5359 5499 6.552445 AATCTGCACTTCAACTATAGACCT 57.448 37.500 6.78 0.00 0.00 3.85
5360 5500 6.552445 ATCTGCACTTCAACTATAGACCTT 57.448 37.500 6.78 0.00 0.00 3.50
5361 5501 6.360370 TCTGCACTTCAACTATAGACCTTT 57.640 37.500 6.78 0.00 0.00 3.11
5362 5502 6.398918 TCTGCACTTCAACTATAGACCTTTC 58.601 40.000 6.78 0.00 0.00 2.62
5363 5503 6.014584 TCTGCACTTCAACTATAGACCTTTCA 60.015 38.462 6.78 0.00 0.00 2.69
5364 5504 6.166279 TGCACTTCAACTATAGACCTTTCAG 58.834 40.000 6.78 0.00 0.00 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.918011 CACACACGCTTATTTATTTTGGTGT 59.082 36.000 0.00 0.00 37.83 4.16
65 66 1.375523 GATCGGCGTTGTTGGAGGT 60.376 57.895 6.85 0.00 0.00 3.85
186 188 7.891561 TGGTTTTGTGGGATTAGTTCTTAATG 58.108 34.615 0.00 0.00 32.09 1.90
189 191 7.064229 ACTTGGTTTTGTGGGATTAGTTCTTA 58.936 34.615 0.00 0.00 0.00 2.10
252 254 4.381708 TGGGGATTTATGGGGTAGTTACA 58.618 43.478 0.00 0.00 0.00 2.41
271 273 5.133660 TCCCATTATATTTCCGGGATATGGG 59.866 44.000 20.89 20.89 41.08 4.00
310 312 3.159472 GGGTTCCGTGTTTCCCTTTTAT 58.841 45.455 0.00 0.00 37.18 1.40
324 326 2.281208 TTGCCTTCGTGGGTTCCG 60.281 61.111 0.05 0.00 36.00 4.30
481 484 2.234300 TCTTTCTTTGCCGTCGTCTT 57.766 45.000 0.00 0.00 0.00 3.01
535 538 8.861033 TTTTGATCTGTTTTGAGATCTGTTTG 57.139 30.769 0.00 0.00 45.98 2.93
759 769 8.601845 TGAGTTTTCGAAATCACTAATTGAGA 57.398 30.769 18.52 0.00 37.77 3.27
785 795 0.535102 CCCGTCCATTGTGATAGGCC 60.535 60.000 0.00 0.00 0.00 5.19
789 799 1.796017 TAGGCCCGTCCATTGTGATA 58.204 50.000 0.00 0.00 37.29 2.15
846 856 1.835531 GGACGAAGATGGGGAAGGTTA 59.164 52.381 0.00 0.00 0.00 2.85
876 886 3.259902 GTTCGGTCTCTGGGTTTGATAC 58.740 50.000 0.00 0.00 0.00 2.24
879 889 0.395312 GGTTCGGTCTCTGGGTTTGA 59.605 55.000 0.00 0.00 0.00 2.69
1170 1180 1.466855 GCGAGCGCCATTTGTAATTC 58.533 50.000 2.29 0.00 34.56 2.17
1345 1359 1.066858 GGAACAGATCAGAGGCGACAA 60.067 52.381 0.00 0.00 0.00 3.18
1347 1361 0.820871 AGGAACAGATCAGAGGCGAC 59.179 55.000 0.00 0.00 0.00 5.19
1373 1387 2.244769 CCCAGATCCAACCCCATAAACT 59.755 50.000 0.00 0.00 0.00 2.66
1401 1416 1.409064 GCGATAGATCTGACCACACCA 59.591 52.381 5.18 0.00 39.76 4.17
1404 1419 0.668535 CCGCGATAGATCTGACCACA 59.331 55.000 8.23 0.00 39.76 4.17
1409 1424 3.211865 ACTGTAACCGCGATAGATCTGA 58.788 45.455 8.23 0.00 39.76 3.27
1417 1432 0.885879 TCACTGACTGTAACCGCGAT 59.114 50.000 8.23 0.00 0.00 4.58
1431 1446 4.414677 TCTATCCCCAGATCAGATCACTG 58.585 47.826 13.14 3.14 44.66 3.66
1472 1487 0.752658 TCATCGGCCTATGTCAGTGG 59.247 55.000 16.28 0.00 0.00 4.00
1519 1534 3.438297 GCACTAGCAATTCTACGAGGA 57.562 47.619 0.00 0.00 41.58 3.71
1767 1793 4.443725 GCATCATTCAGTATCAGACAGACG 59.556 45.833 0.00 0.00 0.00 4.18
1768 1794 5.462729 CAGCATCATTCAGTATCAGACAGAC 59.537 44.000 0.00 0.00 0.00 3.51
1769 1795 5.128335 ACAGCATCATTCAGTATCAGACAGA 59.872 40.000 0.00 0.00 0.00 3.41
1770 1796 5.358090 ACAGCATCATTCAGTATCAGACAG 58.642 41.667 0.00 0.00 0.00 3.51
1771 1797 5.349061 ACAGCATCATTCAGTATCAGACA 57.651 39.130 0.00 0.00 0.00 3.41
1809 1835 3.828451 CCACCCCAAGCAATATTATCTGG 59.172 47.826 0.00 0.00 0.00 3.86
1823 1849 3.596046 AGGAATGATAAGAACCACCCCAA 59.404 43.478 0.00 0.00 0.00 4.12
1847 1886 8.814235 GGAATGATGTTTATTTTGCTTCTGATG 58.186 33.333 0.00 0.00 0.00 3.07
1945 1987 9.581099 AAACAAGTAAACTGTTTAAATGGTGAG 57.419 29.630 21.03 8.90 34.47 3.51
1959 2001 3.175929 GCGTGCAACAAACAAGTAAACT 58.824 40.909 0.00 0.00 35.74 2.66
1968 2010 0.378962 TAGTGTGGCGTGCAACAAAC 59.621 50.000 3.12 0.00 35.74 2.93
2320 2379 3.057315 CACCCTTGAGTATGGTTTTGCAG 60.057 47.826 0.00 0.00 0.00 4.41
2330 2389 6.814954 ATACTGATGTTCACCCTTGAGTAT 57.185 37.500 0.00 0.00 31.71 2.12
2683 2747 5.723295 ACCAAGCATCAACAACCAATATTC 58.277 37.500 0.00 0.00 0.00 1.75
2773 2837 5.068198 AGTTTGTTGCATGATCTTCAGTTGT 59.932 36.000 0.00 0.00 0.00 3.32
2938 3002 0.764890 GCCACCCTGCACCATAGATA 59.235 55.000 0.00 0.00 0.00 1.98
3017 3081 3.181487 CCTTGCCATTAAGAACCATTCCG 60.181 47.826 0.00 0.00 0.00 4.30
3189 3278 6.541641 GCATCCTACAAGAATTTGAGATGTCT 59.458 38.462 14.60 0.00 39.37 3.41
3355 3444 5.174395 TCGGCCAAATACAAATTTCCAATG 58.826 37.500 2.24 0.00 32.87 2.82
3356 3445 5.413309 TCGGCCAAATACAAATTTCCAAT 57.587 34.783 2.24 0.00 32.87 3.16
3431 3520 3.254903 TCTGCATGCATCCATCAAATAGC 59.745 43.478 22.97 0.00 0.00 2.97
3502 3593 8.850156 ACTGTTAGTTAATTGATGCTCTTTGTT 58.150 29.630 0.00 0.00 0.00 2.83
3503 3594 8.396272 ACTGTTAGTTAATTGATGCTCTTTGT 57.604 30.769 0.00 0.00 0.00 2.83
3538 3629 8.773033 ATAATAAGCATGAATTCTGAAGGGTT 57.227 30.769 7.05 3.07 0.00 4.11
3572 3663 4.041198 CCTCTACCCTTAACACAAGTTGGA 59.959 45.833 7.96 0.00 38.69 3.53
3601 3692 5.125739 AGTCATGAACTTCTAGGAAGTACCG 59.874 44.000 12.43 3.92 38.31 4.02
3631 3722 6.641314 TCACTTCTCGATTGAACTCTTTGTAC 59.359 38.462 0.00 0.00 0.00 2.90
3754 3845 7.808856 TGGTTGAGTTGTTACTGTTTACAAAAC 59.191 33.333 8.97 9.64 36.15 2.43
3835 3927 2.662156 GCGTCTTGCAACTAGTACAGTC 59.338 50.000 0.00 0.00 45.45 3.51
3902 3994 4.753610 TGGCAAATTCATCGAATGCAAAAA 59.246 33.333 0.00 0.00 32.14 1.94
3903 3995 4.313282 TGGCAAATTCATCGAATGCAAAA 58.687 34.783 0.00 0.00 32.14 2.44
3904 3996 3.922910 TGGCAAATTCATCGAATGCAAA 58.077 36.364 0.00 0.00 32.14 3.68
3905 3997 3.056678 ACTGGCAAATTCATCGAATGCAA 60.057 39.130 0.00 0.00 32.14 4.08
3906 3998 2.492881 ACTGGCAAATTCATCGAATGCA 59.507 40.909 0.00 0.00 32.14 3.96
3923 4015 3.168628 CAACGCTGCAAAAGACTGG 57.831 52.632 0.00 0.00 0.00 4.00
4035 4133 7.698836 ATTAAGTTGTTTTCATGTTGCTGAC 57.301 32.000 0.00 0.00 0.00 3.51
4103 4201 6.631962 CATCTAGGAAACGTAGAGAGGTTTT 58.368 40.000 0.00 0.00 42.26 2.43
4106 4204 3.633065 GCATCTAGGAAACGTAGAGAGGT 59.367 47.826 0.00 0.00 30.04 3.85
4135 4233 6.491403 GCCCAACCACAAGATTCATAATAGAT 59.509 38.462 0.00 0.00 0.00 1.98
4212 4311 7.736447 ATACTTGGTTCAGTTCAGAGAAAAG 57.264 36.000 0.00 0.00 0.00 2.27
4482 4586 1.493022 TGTTTGAGTACAGGGTTGGCT 59.507 47.619 0.00 0.00 0.00 4.75
4592 4696 2.025719 GGCGGAAGAATTAGCCAGC 58.974 57.895 0.00 0.00 46.96 4.85
4596 4700 1.666189 GTCACTGGCGGAAGAATTAGC 59.334 52.381 0.00 0.00 0.00 3.09
4613 4718 4.529109 TTTACATGATCCAGACACGTCA 57.471 40.909 0.00 0.00 0.00 4.35
4743 4854 1.663643 GATCTTAACGTCCATGCGCAA 59.336 47.619 17.11 0.00 34.88 4.85
4746 4857 3.046390 GAGAGATCTTAACGTCCATGCG 58.954 50.000 0.00 0.00 37.94 4.73
4863 4977 4.618338 TCGTCAAACTTTATCGTCAACG 57.382 40.909 0.00 0.00 41.45 4.10
4864 4978 7.427318 ACTTTTTCGTCAAACTTTATCGTCAAC 59.573 33.333 0.00 0.00 0.00 3.18
4865 4979 7.465989 ACTTTTTCGTCAAACTTTATCGTCAA 58.534 30.769 0.00 0.00 0.00 3.18
4866 4980 7.007313 ACTTTTTCGTCAAACTTTATCGTCA 57.993 32.000 0.00 0.00 0.00 4.35
4869 4983 8.318000 TCAAACTTTTTCGTCAAACTTTATCG 57.682 30.769 0.00 0.00 0.00 2.92
4872 4986 8.030106 ACCATCAAACTTTTTCGTCAAACTTTA 58.970 29.630 0.00 0.00 0.00 1.85
4874 4988 6.310224 CACCATCAAACTTTTTCGTCAAACTT 59.690 34.615 0.00 0.00 0.00 2.66
4875 4989 5.804979 CACCATCAAACTTTTTCGTCAAACT 59.195 36.000 0.00 0.00 0.00 2.66
4876 4990 5.802956 TCACCATCAAACTTTTTCGTCAAAC 59.197 36.000 0.00 0.00 0.00 2.93
4877 4991 5.955488 TCACCATCAAACTTTTTCGTCAAA 58.045 33.333 0.00 0.00 0.00 2.69
4878 4992 5.568685 TCACCATCAAACTTTTTCGTCAA 57.431 34.783 0.00 0.00 0.00 3.18
4879 4993 5.278266 GGATCACCATCAAACTTTTTCGTCA 60.278 40.000 0.00 0.00 35.97 4.35
4880 4994 5.154222 GGATCACCATCAAACTTTTTCGTC 58.846 41.667 0.00 0.00 35.97 4.20
4881 4995 4.022329 GGGATCACCATCAAACTTTTTCGT 60.022 41.667 0.00 0.00 39.85 3.85
4882 4996 4.218417 AGGGATCACCATCAAACTTTTTCG 59.782 41.667 0.00 0.00 43.89 3.46
4883 4997 5.011023 ACAGGGATCACCATCAAACTTTTTC 59.989 40.000 0.00 0.00 43.89 2.29
4884 4998 4.901250 ACAGGGATCACCATCAAACTTTTT 59.099 37.500 0.00 0.00 43.89 1.94
4885 4999 4.281688 CACAGGGATCACCATCAAACTTTT 59.718 41.667 0.00 0.00 43.89 2.27
4886 5000 3.828451 CACAGGGATCACCATCAAACTTT 59.172 43.478 0.00 0.00 43.89 2.66
4887 5001 3.074390 TCACAGGGATCACCATCAAACTT 59.926 43.478 0.00 0.00 43.89 2.66
4888 5002 2.644299 TCACAGGGATCACCATCAAACT 59.356 45.455 0.00 0.00 43.89 2.66
4889 5003 3.071874 TCACAGGGATCACCATCAAAC 57.928 47.619 0.00 0.00 43.89 2.93
4890 5004 3.805066 TTCACAGGGATCACCATCAAA 57.195 42.857 0.00 0.00 43.89 2.69
4891 5005 4.320546 AATTCACAGGGATCACCATCAA 57.679 40.909 0.00 0.00 43.89 2.57
4892 5006 4.272489 GAAATTCACAGGGATCACCATCA 58.728 43.478 0.00 0.00 43.89 3.07
4893 5007 3.313526 CGAAATTCACAGGGATCACCATC 59.686 47.826 0.00 0.00 43.89 3.51
4919 5033 4.153117 CCCGATATTTTGTAGAGCATCAGC 59.847 45.833 0.00 0.00 37.82 4.26
4958 5072 1.699083 TCTGCCCACATCTTGTTCTGA 59.301 47.619 0.00 0.00 0.00 3.27
5009 5123 6.183360 TGCAGATTAGCAGTCTTATTTTTCCG 60.183 38.462 0.00 0.00 40.11 4.30
5025 5139 3.937706 CTGGAGTTGGAAGTGCAGATTAG 59.062 47.826 9.49 0.00 46.87 1.73
5050 5164 5.049267 GGCCGTTTTCACTTGTTTCTATACA 60.049 40.000 0.00 0.00 0.00 2.29
5053 5167 4.142038 AGGCCGTTTTCACTTGTTTCTAT 58.858 39.130 0.00 0.00 0.00 1.98
5054 5168 3.547746 AGGCCGTTTTCACTTGTTTCTA 58.452 40.909 0.00 0.00 0.00 2.10
5089 5203 2.898729 AGCCATGACGTTGATCTAGG 57.101 50.000 0.00 0.00 0.00 3.02
5111 5225 7.675170 GCAAAGCATGACGGTTTTCTTTTAAAA 60.675 33.333 0.00 0.00 42.62 1.52
5150 5290 9.855021 AATTAATTTATCAAACTTCCGTCAAGG 57.145 29.630 0.00 0.00 42.97 3.61
5154 5294 9.717892 GGAGAATTAATTTATCAAACTTCCGTC 57.282 33.333 1.43 0.00 0.00 4.79
5155 5295 9.238368 TGGAGAATTAATTTATCAAACTTCCGT 57.762 29.630 1.43 0.00 0.00 4.69
5159 5299 9.822185 GGCATGGAGAATTAATTTATCAAACTT 57.178 29.630 1.43 0.00 0.00 2.66
5160 5300 9.205513 AGGCATGGAGAATTAATTTATCAAACT 57.794 29.630 1.43 0.00 0.00 2.66
5161 5301 9.822185 AAGGCATGGAGAATTAATTTATCAAAC 57.178 29.630 1.43 0.00 0.00 2.93
5168 5308 9.448438 GGTTTAAAAGGCATGGAGAATTAATTT 57.552 29.630 1.43 0.00 0.00 1.82
5169 5309 8.825774 AGGTTTAAAAGGCATGGAGAATTAATT 58.174 29.630 0.00 0.00 0.00 1.40
5170 5310 8.379428 AGGTTTAAAAGGCATGGAGAATTAAT 57.621 30.769 0.00 0.00 0.00 1.40
5171 5311 7.790782 AGGTTTAAAAGGCATGGAGAATTAA 57.209 32.000 0.00 0.00 0.00 1.40
5172 5312 7.790782 AAGGTTTAAAAGGCATGGAGAATTA 57.209 32.000 0.00 0.00 0.00 1.40
5173 5313 6.686484 AAGGTTTAAAAGGCATGGAGAATT 57.314 33.333 0.00 0.00 0.00 2.17
5174 5314 6.686484 AAAGGTTTAAAAGGCATGGAGAAT 57.314 33.333 0.00 0.00 0.00 2.40
5175 5315 6.326323 AGAAAAGGTTTAAAAGGCATGGAGAA 59.674 34.615 0.00 0.00 0.00 2.87
5176 5316 5.838521 AGAAAAGGTTTAAAAGGCATGGAGA 59.161 36.000 0.00 0.00 0.00 3.71
5177 5317 6.101650 AGAAAAGGTTTAAAAGGCATGGAG 57.898 37.500 0.00 0.00 0.00 3.86
5178 5318 6.493189 AAGAAAAGGTTTAAAAGGCATGGA 57.507 33.333 0.00 0.00 0.00 3.41
5179 5319 6.765512 TCAAAGAAAAGGTTTAAAAGGCATGG 59.234 34.615 0.00 0.00 0.00 3.66
5180 5320 7.784633 TCAAAGAAAAGGTTTAAAAGGCATG 57.215 32.000 0.00 0.00 0.00 4.06
5181 5321 8.673711 GTTTCAAAGAAAAGGTTTAAAAGGCAT 58.326 29.630 0.00 0.00 0.00 4.40
5182 5322 7.119992 GGTTTCAAAGAAAAGGTTTAAAAGGCA 59.880 33.333 0.00 0.00 0.00 4.75
5183 5323 7.469260 GGTTTCAAAGAAAAGGTTTAAAAGGC 58.531 34.615 0.00 0.00 0.00 4.35
5184 5324 7.546316 TCGGTTTCAAAGAAAAGGTTTAAAAGG 59.454 33.333 0.00 0.00 0.00 3.11
5185 5325 8.468720 TCGGTTTCAAAGAAAAGGTTTAAAAG 57.531 30.769 0.00 0.00 0.00 2.27
5186 5326 8.874816 CATCGGTTTCAAAGAAAAGGTTTAAAA 58.125 29.630 0.00 0.00 0.00 1.52
5187 5327 7.492994 CCATCGGTTTCAAAGAAAAGGTTTAAA 59.507 33.333 0.00 0.00 0.00 1.52
5188 5328 6.981559 CCATCGGTTTCAAAGAAAAGGTTTAA 59.018 34.615 0.00 0.00 0.00 1.52
5189 5329 6.097129 ACCATCGGTTTCAAAGAAAAGGTTTA 59.903 34.615 0.00 0.00 27.29 2.01
5190 5330 5.105106 ACCATCGGTTTCAAAGAAAAGGTTT 60.105 36.000 0.00 0.00 27.29 3.27
5191 5331 4.404394 ACCATCGGTTTCAAAGAAAAGGTT 59.596 37.500 0.00 0.00 27.29 3.50
5192 5332 3.958147 ACCATCGGTTTCAAAGAAAAGGT 59.042 39.130 0.00 0.00 27.29 3.50
5193 5333 4.037446 TCACCATCGGTTTCAAAGAAAAGG 59.963 41.667 0.00 0.00 31.02 3.11
5194 5334 5.181690 TCACCATCGGTTTCAAAGAAAAG 57.818 39.130 0.00 0.00 31.02 2.27
5195 5335 5.534654 AGATCACCATCGGTTTCAAAGAAAA 59.465 36.000 0.00 0.00 31.02 2.29
5196 5336 5.070001 AGATCACCATCGGTTTCAAAGAAA 58.930 37.500 0.00 0.00 31.02 2.52
5197 5337 4.651778 AGATCACCATCGGTTTCAAAGAA 58.348 39.130 0.00 0.00 31.02 2.52
5198 5338 4.020218 AGAGATCACCATCGGTTTCAAAGA 60.020 41.667 0.00 0.00 31.02 2.52
5199 5339 4.256920 AGAGATCACCATCGGTTTCAAAG 58.743 43.478 0.00 0.00 31.02 2.77
5200 5340 4.286297 AGAGATCACCATCGGTTTCAAA 57.714 40.909 0.00 0.00 31.02 2.69
5201 5341 3.981071 AGAGATCACCATCGGTTTCAA 57.019 42.857 0.00 0.00 31.02 2.69
5202 5342 3.181490 CGTAGAGATCACCATCGGTTTCA 60.181 47.826 0.00 0.00 31.02 2.69
5203 5343 3.066342 TCGTAGAGATCACCATCGGTTTC 59.934 47.826 0.00 0.00 31.02 2.78
5204 5344 3.021695 TCGTAGAGATCACCATCGGTTT 58.978 45.455 0.00 0.00 31.02 3.27
5205 5345 2.651455 TCGTAGAGATCACCATCGGTT 58.349 47.619 0.00 0.00 31.02 4.44
5206 5346 2.343484 TCGTAGAGATCACCATCGGT 57.657 50.000 0.00 0.00 35.62 4.69
5207 5347 3.924918 ATTCGTAGAGATCACCATCGG 57.075 47.619 0.00 0.00 38.43 4.18
5208 5348 5.520288 ACAAAATTCGTAGAGATCACCATCG 59.480 40.000 0.00 0.00 38.43 3.84
5209 5349 6.910536 ACAAAATTCGTAGAGATCACCATC 57.089 37.500 0.00 0.00 38.43 3.51
5210 5350 6.094048 CCAACAAAATTCGTAGAGATCACCAT 59.906 38.462 0.00 0.00 38.43 3.55
5211 5351 5.411361 CCAACAAAATTCGTAGAGATCACCA 59.589 40.000 0.00 0.00 38.43 4.17
5212 5352 5.673818 GCCAACAAAATTCGTAGAGATCACC 60.674 44.000 0.00 0.00 38.43 4.02
5213 5353 5.324697 GCCAACAAAATTCGTAGAGATCAC 58.675 41.667 0.00 0.00 38.43 3.06
5214 5354 4.092821 CGCCAACAAAATTCGTAGAGATCA 59.907 41.667 0.00 0.00 38.43 2.92
5215 5355 4.494199 CCGCCAACAAAATTCGTAGAGATC 60.494 45.833 0.00 0.00 38.43 2.75
5216 5356 3.374058 CCGCCAACAAAATTCGTAGAGAT 59.626 43.478 0.00 0.00 38.43 2.75
5217 5357 2.739913 CCGCCAACAAAATTCGTAGAGA 59.260 45.455 0.00 0.00 38.43 3.10
5218 5358 2.159572 CCCGCCAACAAAATTCGTAGAG 60.160 50.000 0.00 0.00 38.43 2.43
5219 5359 1.807742 CCCGCCAACAAAATTCGTAGA 59.192 47.619 0.00 0.00 0.00 2.59
5220 5360 1.731098 GCCCGCCAACAAAATTCGTAG 60.731 52.381 0.00 0.00 0.00 3.51
5221 5361 0.241481 GCCCGCCAACAAAATTCGTA 59.759 50.000 0.00 0.00 0.00 3.43
5222 5362 1.006688 GCCCGCCAACAAAATTCGT 60.007 52.632 0.00 0.00 0.00 3.85
5223 5363 2.085844 CGCCCGCCAACAAAATTCG 61.086 57.895 0.00 0.00 0.00 3.34
5224 5364 0.598942 AACGCCCGCCAACAAAATTC 60.599 50.000 0.00 0.00 0.00 2.17
5225 5365 0.598942 GAACGCCCGCCAACAAAATT 60.599 50.000 0.00 0.00 0.00 1.82
5226 5366 1.006688 GAACGCCCGCCAACAAAAT 60.007 52.632 0.00 0.00 0.00 1.82
5227 5367 1.668101 AAGAACGCCCGCCAACAAAA 61.668 50.000 0.00 0.00 0.00 2.44
5228 5368 2.065906 GAAGAACGCCCGCCAACAAA 62.066 55.000 0.00 0.00 0.00 2.83
5229 5369 2.517402 AAGAACGCCCGCCAACAA 60.517 55.556 0.00 0.00 0.00 2.83
5230 5370 2.975799 GAAGAACGCCCGCCAACA 60.976 61.111 0.00 0.00 0.00 3.33
5231 5371 2.065906 TTTGAAGAACGCCCGCCAAC 62.066 55.000 0.00 0.00 0.00 3.77
5232 5372 1.384989 TTTTGAAGAACGCCCGCCAA 61.385 50.000 0.00 0.00 0.00 4.52
5233 5373 1.175983 ATTTTGAAGAACGCCCGCCA 61.176 50.000 0.00 0.00 0.00 5.69
5234 5374 0.806241 TATTTTGAAGAACGCCCGCC 59.194 50.000 0.00 0.00 0.00 6.13
5235 5375 2.096819 TGATATTTTGAAGAACGCCCGC 59.903 45.455 0.00 0.00 0.00 6.13
5236 5376 3.242739 CCTGATATTTTGAAGAACGCCCG 60.243 47.826 0.00 0.00 0.00 6.13
5237 5377 3.694566 ACCTGATATTTTGAAGAACGCCC 59.305 43.478 0.00 0.00 0.00 6.13
5238 5378 4.965119 ACCTGATATTTTGAAGAACGCC 57.035 40.909 0.00 0.00 0.00 5.68
5239 5379 6.612306 AGAAACCTGATATTTTGAAGAACGC 58.388 36.000 0.00 0.00 0.00 4.84
5240 5380 7.750903 GGAAGAAACCTGATATTTTGAAGAACG 59.249 37.037 0.00 0.00 0.00 3.95
5241 5381 8.797438 AGGAAGAAACCTGATATTTTGAAGAAC 58.203 33.333 0.00 0.00 39.01 3.01
5242 5382 8.940397 AGGAAGAAACCTGATATTTTGAAGAA 57.060 30.769 0.00 0.00 39.01 2.52
5243 5383 8.940397 AAGGAAGAAACCTGATATTTTGAAGA 57.060 30.769 0.00 0.00 40.49 2.87
5247 5387 9.639601 GGTTAAAGGAAGAAACCTGATATTTTG 57.360 33.333 0.00 0.00 40.49 2.44
5257 5397 4.001652 CTCGGAGGTTAAAGGAAGAAACC 58.998 47.826 0.00 0.00 42.48 3.27
5258 5398 4.891260 TCTCGGAGGTTAAAGGAAGAAAC 58.109 43.478 4.96 0.00 0.00 2.78
5259 5399 5.163280 TGTTCTCGGAGGTTAAAGGAAGAAA 60.163 40.000 4.96 0.00 0.00 2.52
5260 5400 4.345837 TGTTCTCGGAGGTTAAAGGAAGAA 59.654 41.667 4.96 0.00 0.00 2.52
5261 5401 3.899360 TGTTCTCGGAGGTTAAAGGAAGA 59.101 43.478 4.96 0.00 0.00 2.87
5262 5402 4.267349 TGTTCTCGGAGGTTAAAGGAAG 57.733 45.455 4.96 0.00 0.00 3.46
5263 5403 4.504340 CCTTGTTCTCGGAGGTTAAAGGAA 60.504 45.833 17.41 0.00 35.94 3.36
5264 5404 3.007614 CCTTGTTCTCGGAGGTTAAAGGA 59.992 47.826 17.41 0.00 35.94 3.36
5265 5405 3.244457 ACCTTGTTCTCGGAGGTTAAAGG 60.244 47.826 19.22 19.22 40.83 3.11
5266 5406 3.746492 CACCTTGTTCTCGGAGGTTAAAG 59.254 47.826 4.96 4.76 41.72 1.85
5267 5407 3.135167 ACACCTTGTTCTCGGAGGTTAAA 59.865 43.478 4.96 0.00 41.72 1.52
5268 5408 2.701951 ACACCTTGTTCTCGGAGGTTAA 59.298 45.455 4.96 0.00 41.72 2.01
5269 5409 2.322658 ACACCTTGTTCTCGGAGGTTA 58.677 47.619 4.96 0.00 41.72 2.85
5270 5410 1.129058 ACACCTTGTTCTCGGAGGTT 58.871 50.000 4.96 0.00 41.72 3.50
5271 5411 2.005370 TACACCTTGTTCTCGGAGGT 57.995 50.000 4.96 0.00 44.39 3.85
5272 5412 2.561419 TCTTACACCTTGTTCTCGGAGG 59.439 50.000 4.96 0.00 36.62 4.30
5273 5413 3.936372 TCTTACACCTTGTTCTCGGAG 57.064 47.619 0.00 0.00 0.00 4.63
5274 5414 4.675976 TTTCTTACACCTTGTTCTCGGA 57.324 40.909 0.00 0.00 0.00 4.55
5275 5415 5.106673 GGATTTTCTTACACCTTGTTCTCGG 60.107 44.000 0.00 0.00 0.00 4.63
5276 5416 5.701290 AGGATTTTCTTACACCTTGTTCTCG 59.299 40.000 0.00 0.00 0.00 4.04
5277 5417 7.511959 AAGGATTTTCTTACACCTTGTTCTC 57.488 36.000 0.00 0.00 39.14 2.87
5278 5418 7.559897 TCAAAGGATTTTCTTACACCTTGTTCT 59.440 33.333 0.00 0.00 40.25 3.01
5279 5419 7.712797 TCAAAGGATTTTCTTACACCTTGTTC 58.287 34.615 0.00 0.00 40.25 3.18
5280 5420 7.654022 TCAAAGGATTTTCTTACACCTTGTT 57.346 32.000 0.00 0.00 40.25 2.83
5281 5421 7.839680 ATCAAAGGATTTTCTTACACCTTGT 57.160 32.000 0.00 0.00 40.25 3.16
5282 5422 9.626045 GTTATCAAAGGATTTTCTTACACCTTG 57.374 33.333 0.00 0.00 40.25 3.61
5283 5423 8.803235 GGTTATCAAAGGATTTTCTTACACCTT 58.197 33.333 0.00 0.00 41.83 3.50
5284 5424 7.396339 GGGTTATCAAAGGATTTTCTTACACCT 59.604 37.037 0.00 0.00 35.03 4.00
5285 5425 7.544622 GGGTTATCAAAGGATTTTCTTACACC 58.455 38.462 0.00 0.00 35.03 4.16
5286 5426 7.094506 ACGGGTTATCAAAGGATTTTCTTACAC 60.095 37.037 0.00 0.00 35.03 2.90
5287 5427 6.943718 ACGGGTTATCAAAGGATTTTCTTACA 59.056 34.615 0.00 0.00 35.03 2.41
5288 5428 7.387119 ACGGGTTATCAAAGGATTTTCTTAC 57.613 36.000 0.00 0.00 35.03 2.34
5289 5429 7.121611 GGAACGGGTTATCAAAGGATTTTCTTA 59.878 37.037 0.00 0.00 35.03 2.10
5290 5430 6.071560 GGAACGGGTTATCAAAGGATTTTCTT 60.072 38.462 0.00 0.00 35.03 2.52
5291 5431 5.417894 GGAACGGGTTATCAAAGGATTTTCT 59.582 40.000 0.00 0.00 35.03 2.52
5292 5432 5.393787 GGGAACGGGTTATCAAAGGATTTTC 60.394 44.000 0.00 0.00 35.03 2.29
5293 5433 4.464951 GGGAACGGGTTATCAAAGGATTTT 59.535 41.667 0.00 0.00 35.03 1.82
5294 5434 4.021229 GGGAACGGGTTATCAAAGGATTT 58.979 43.478 0.00 0.00 40.26 2.17
5295 5435 3.268595 AGGGAACGGGTTATCAAAGGATT 59.731 43.478 0.00 0.00 34.89 3.01
5296 5436 2.850568 AGGGAACGGGTTATCAAAGGAT 59.149 45.455 0.00 0.00 37.55 3.24
5297 5437 2.237893 GAGGGAACGGGTTATCAAAGGA 59.762 50.000 0.00 0.00 0.00 3.36
5298 5438 2.640184 GAGGGAACGGGTTATCAAAGG 58.360 52.381 0.00 0.00 0.00 3.11
5299 5439 2.640184 GGAGGGAACGGGTTATCAAAG 58.360 52.381 0.00 0.00 0.00 2.77
5300 5440 1.065998 CGGAGGGAACGGGTTATCAAA 60.066 52.381 0.00 0.00 0.00 2.69
5301 5441 0.538118 CGGAGGGAACGGGTTATCAA 59.462 55.000 0.00 0.00 0.00 2.57
5302 5442 0.324552 TCGGAGGGAACGGGTTATCA 60.325 55.000 0.00 0.00 0.00 2.15
5303 5443 0.826062 TTCGGAGGGAACGGGTTATC 59.174 55.000 0.00 0.00 0.00 1.75
5304 5444 1.278537 TTTCGGAGGGAACGGGTTAT 58.721 50.000 0.00 0.00 33.42 1.89
5305 5445 1.055040 TTTTCGGAGGGAACGGGTTA 58.945 50.000 0.00 0.00 33.42 2.85
5306 5446 0.183252 TTTTTCGGAGGGAACGGGTT 59.817 50.000 0.00 0.00 33.42 4.11
5307 5447 0.402887 ATTTTTCGGAGGGAACGGGT 59.597 50.000 0.00 0.00 33.42 5.28
5308 5448 2.285977 CTATTTTTCGGAGGGAACGGG 58.714 52.381 0.00 0.00 33.42 5.28
5309 5449 2.093341 TCCTATTTTTCGGAGGGAACGG 60.093 50.000 0.00 0.00 33.42 4.44
5310 5450 2.934553 GTCCTATTTTTCGGAGGGAACG 59.065 50.000 0.00 0.00 33.42 3.95
5311 5451 3.939592 CAGTCCTATTTTTCGGAGGGAAC 59.060 47.826 0.00 0.00 33.42 3.62
5312 5452 3.841845 TCAGTCCTATTTTTCGGAGGGAA 59.158 43.478 0.00 0.00 0.00 3.97
5313 5453 3.446968 TCAGTCCTATTTTTCGGAGGGA 58.553 45.455 0.00 0.00 0.00 4.20
5314 5454 3.906720 TCAGTCCTATTTTTCGGAGGG 57.093 47.619 0.00 0.00 0.00 4.30
5315 5455 7.386299 CAGATTATCAGTCCTATTTTTCGGAGG 59.614 40.741 0.00 0.00 0.00 4.30
5316 5456 7.095439 GCAGATTATCAGTCCTATTTTTCGGAG 60.095 40.741 0.00 0.00 0.00 4.63
5317 5457 6.706270 GCAGATTATCAGTCCTATTTTTCGGA 59.294 38.462 0.00 0.00 0.00 4.55
5318 5458 6.483307 TGCAGATTATCAGTCCTATTTTTCGG 59.517 38.462 0.00 0.00 0.00 4.30
5319 5459 7.225538 AGTGCAGATTATCAGTCCTATTTTTCG 59.774 37.037 0.00 0.00 0.00 3.46
5320 5460 8.443953 AGTGCAGATTATCAGTCCTATTTTTC 57.556 34.615 0.00 0.00 0.00 2.29
5321 5461 8.814038 AAGTGCAGATTATCAGTCCTATTTTT 57.186 30.769 0.00 0.00 0.00 1.94
5322 5462 8.049117 TGAAGTGCAGATTATCAGTCCTATTTT 58.951 33.333 0.00 0.00 0.00 1.82
5323 5463 7.568349 TGAAGTGCAGATTATCAGTCCTATTT 58.432 34.615 0.00 0.00 0.00 1.40
5324 5464 7.129457 TGAAGTGCAGATTATCAGTCCTATT 57.871 36.000 0.00 0.00 0.00 1.73
5325 5465 6.737720 TGAAGTGCAGATTATCAGTCCTAT 57.262 37.500 0.00 0.00 0.00 2.57
5326 5466 6.155221 AGTTGAAGTGCAGATTATCAGTCCTA 59.845 38.462 0.00 0.00 0.00 2.94
5327 5467 5.046014 AGTTGAAGTGCAGATTATCAGTCCT 60.046 40.000 0.00 0.00 0.00 3.85
5328 5468 5.181748 AGTTGAAGTGCAGATTATCAGTCC 58.818 41.667 0.00 0.00 0.00 3.85
5329 5469 9.190858 CTATAGTTGAAGTGCAGATTATCAGTC 57.809 37.037 0.00 0.00 0.00 3.51
5330 5470 8.918116 TCTATAGTTGAAGTGCAGATTATCAGT 58.082 33.333 0.00 0.00 0.00 3.41
5331 5471 9.190858 GTCTATAGTTGAAGTGCAGATTATCAG 57.809 37.037 0.00 0.00 0.00 2.90
5332 5472 8.144478 GGTCTATAGTTGAAGTGCAGATTATCA 58.856 37.037 0.00 0.00 0.00 2.15
5333 5473 8.364142 AGGTCTATAGTTGAAGTGCAGATTATC 58.636 37.037 0.00 0.00 0.00 1.75
5334 5474 8.256356 AGGTCTATAGTTGAAGTGCAGATTAT 57.744 34.615 0.00 0.00 0.00 1.28
5335 5475 7.661536 AGGTCTATAGTTGAAGTGCAGATTA 57.338 36.000 0.00 0.00 0.00 1.75
5336 5476 6.552445 AGGTCTATAGTTGAAGTGCAGATT 57.448 37.500 0.00 0.00 0.00 2.40
5337 5477 6.552445 AAGGTCTATAGTTGAAGTGCAGAT 57.448 37.500 0.00 0.00 0.00 2.90
5338 5478 6.014584 TGAAAGGTCTATAGTTGAAGTGCAGA 60.015 38.462 0.00 0.00 0.00 4.26
5339 5479 6.166279 TGAAAGGTCTATAGTTGAAGTGCAG 58.834 40.000 0.00 0.00 0.00 4.41
5340 5480 6.109156 TGAAAGGTCTATAGTTGAAGTGCA 57.891 37.500 0.00 0.00 0.00 4.57
5341 5481 6.654793 CTGAAAGGTCTATAGTTGAAGTGC 57.345 41.667 0.00 0.00 0.00 4.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.