Multiple sequence alignment - TraesCS2B01G443700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G443700 chr2B 100.000 4431 0 0 1 4431 636766386 636761956 0.000000e+00 8183.0
1 TraesCS2B01G443700 chr2B 89.890 1177 111 4 1657 2828 634191504 634192677 0.000000e+00 1507.0
2 TraesCS2B01G443700 chr2B 82.528 1179 183 13 1663 2831 636555842 636554677 0.000000e+00 1014.0
3 TraesCS2B01G443700 chr2B 85.399 726 92 6 1513 2225 636568927 636568203 0.000000e+00 741.0
4 TraesCS2B01G443700 chr2B 95.815 454 18 1 59 512 204833183 204832731 0.000000e+00 732.0
5 TraesCS2B01G443700 chr2B 81.834 589 97 6 2313 2899 636568180 636567600 1.850000e-133 486.0
6 TraesCS2B01G443700 chr2B 81.670 551 91 7 2282 2831 636561539 636560998 2.430000e-122 449.0
7 TraesCS2B01G443700 chr2A 91.454 2937 191 26 1549 4431 678610745 678607815 0.000000e+00 3978.0
8 TraesCS2B01G443700 chr2A 83.563 1381 207 15 1510 2879 678547185 678545814 0.000000e+00 1275.0
9 TraesCS2B01G443700 chr2A 89.309 608 46 9 3833 4431 559620517 559619920 0.000000e+00 745.0
10 TraesCS2B01G443700 chr2A 93.646 362 18 4 1079 1439 678611362 678611005 1.810000e-148 536.0
11 TraesCS2B01G443700 chr2A 81.420 662 108 9 2282 2937 678450262 678449610 1.090000e-145 527.0
12 TraesCS2B01G443700 chr2A 88.660 388 38 3 527 910 678662653 678662268 6.710000e-128 468.0
13 TraesCS2B01G443700 chr2A 83.055 419 62 4 2410 2828 677749015 677749424 5.410000e-99 372.0
14 TraesCS2B01G443700 chr2A 87.879 198 17 3 3833 4023 610051671 610051868 4.460000e-55 226.0
15 TraesCS2B01G443700 chr2A 82.822 163 22 5 567 724 14852322 14852161 1.660000e-29 141.0
16 TraesCS2B01G443700 chr2A 85.714 112 10 5 980 1087 678613213 678613104 3.620000e-21 113.0
17 TraesCS2B01G443700 chr2A 95.082 61 3 0 1475 1535 678610796 678610736 3.650000e-16 97.1
18 TraesCS2B01G443700 chr2D 90.008 1321 79 16 3160 4431 535478545 535477229 0.000000e+00 1659.0
19 TraesCS2B01G443700 chr2D 90.571 1156 100 6 1977 3130 535479693 535478545 0.000000e+00 1522.0
20 TraesCS2B01G443700 chr2D 83.866 1407 197 19 1508 2896 535286961 535285567 0.000000e+00 1314.0
21 TraesCS2B01G443700 chr2D 91.459 562 35 4 1420 1980 535555617 535555068 0.000000e+00 760.0
22 TraesCS2B01G443700 chr2D 86.295 664 74 9 1508 2155 535239580 535238918 0.000000e+00 706.0
23 TraesCS2B01G443700 chr2D 84.801 579 46 13 3835 4395 13361823 13362377 1.080000e-150 544.0
24 TraesCS2B01G443700 chr2D 88.305 419 33 5 535 940 535559651 535559236 5.150000e-134 488.0
25 TraesCS2B01G443700 chr2D 92.926 311 16 2 1123 1428 535557570 535557261 8.740000e-122 448.0
26 TraesCS2B01G443700 chr2D 82.200 500 74 3 2416 2915 535225489 535225005 2.470000e-112 416.0
27 TraesCS2B01G443700 chr2D 89.868 227 23 0 2602 2828 533989118 533989344 4.330000e-75 292.0
28 TraesCS2B01G443700 chr2D 80.380 158 29 2 3831 3988 150927569 150927414 7.790000e-23 119.0
29 TraesCS2B01G443700 chr7B 89.396 613 45 9 3837 4431 648280653 648280043 0.000000e+00 754.0
30 TraesCS2B01G443700 chr7B 95.652 460 17 2 58 517 677160119 677159663 0.000000e+00 736.0
31 TraesCS2B01G443700 chr7B 81.690 213 29 7 521 724 666628829 666629040 7.620000e-38 169.0
32 TraesCS2B01G443700 chr1B 89.362 611 49 10 3836 4431 679726308 679725699 0.000000e+00 754.0
33 TraesCS2B01G443700 chr1B 93.790 467 17 3 58 515 647530688 647531151 0.000000e+00 691.0
34 TraesCS2B01G443700 chr1B 87.097 589 55 11 3830 4399 175672979 175673565 0.000000e+00 647.0
35 TraesCS2B01G443700 chr1B 94.631 298 13 1 54 351 529292425 529292719 4.040000e-125 459.0
36 TraesCS2B01G443700 chr1B 86.709 158 19 2 566 722 60251464 60251620 1.640000e-39 174.0
37 TraesCS2B01G443700 chr4B 88.816 608 49 9 3835 4425 437093645 437094250 0.000000e+00 728.0
38 TraesCS2B01G443700 chr4B 94.589 462 16 5 58 518 659485816 659486269 0.000000e+00 706.0
39 TraesCS2B01G443700 chr4B 93.418 471 20 3 54 515 273452597 273452129 0.000000e+00 688.0
40 TraesCS2B01G443700 chr4B 100.000 49 0 0 3786 3834 568334397 568334349 1.700000e-14 91.6
41 TraesCS2B01G443700 chr4A 95.217 460 19 2 58 517 673334524 673334980 0.000000e+00 725.0
42 TraesCS2B01G443700 chr4A 96.032 252 10 0 264 515 686632326 686632075 1.150000e-110 411.0
43 TraesCS2B01G443700 chr4A 93.878 49 3 0 3786 3834 12684265 12684313 1.710000e-09 75.0
44 TraesCS2B01G443700 chr6B 88.274 614 55 10 3832 4431 720236674 720236064 0.000000e+00 719.0
45 TraesCS2B01G443700 chr6B 91.755 473 27 4 54 516 700971959 700971489 0.000000e+00 647.0
46 TraesCS2B01G443700 chr6B 91.828 465 19 8 51 515 107776315 107776760 8.090000e-177 630.0
47 TraesCS2B01G443700 chr6B 96.047 253 10 0 264 516 16104707 16104455 3.190000e-111 412.0
48 TraesCS2B01G443700 chr6B 95.652 253 11 0 264 516 46511292 46511040 1.480000e-109 407.0
49 TraesCS2B01G443700 chr3B 88.293 615 51 10 3836 4431 661679837 661680449 0.000000e+00 717.0
50 TraesCS2B01G443700 chr5D 87.725 611 48 15 3834 4431 340399259 340398663 0.000000e+00 688.0
51 TraesCS2B01G443700 chr5D 90.979 388 28 4 4017 4402 565142267 565142649 2.360000e-142 516.0
52 TraesCS2B01G443700 chr5D 82.306 373 55 5 1512 1874 443631308 443631679 3.330000e-81 313.0
53 TraesCS2B01G443700 chr5D 74.409 762 155 25 1514 2255 444065903 444066644 1.560000e-74 291.0
54 TraesCS2B01G443700 chr5D 77.676 327 59 11 2509 2829 557924897 557925215 2.100000e-43 187.0
55 TraesCS2B01G443700 chr5D 82.963 135 16 3 594 721 3237743 3237877 1.010000e-21 115.0
56 TraesCS2B01G443700 chr5D 100.000 29 0 0 3845 3873 515642360 515642388 2.000000e-03 54.7
57 TraesCS2B01G443700 chr5D 94.286 35 1 1 654 687 160064190 160064156 8.000000e-03 52.8
58 TraesCS2B01G443700 chr4D 89.831 531 35 8 3918 4431 485769154 485768626 0.000000e+00 664.0
59 TraesCS2B01G443700 chr4D 95.146 103 5 0 3835 3937 485769267 485769165 3.550000e-36 163.0
60 TraesCS2B01G443700 chr4D 97.959 49 1 0 3786 3834 455248945 455248897 7.900000e-13 86.1
61 TraesCS2B01G443700 chr7D 86.853 502 34 16 3925 4409 564570989 564570503 2.350000e-147 532.0
62 TraesCS2B01G443700 chr7D 82.775 209 26 9 522 722 591222536 591222742 1.270000e-40 178.0
63 TraesCS2B01G443700 chr7D 100.000 29 0 0 3845 3873 112758463 112758435 2.000000e-03 54.7
64 TraesCS2B01G443700 chr7D 100.000 29 0 0 3845 3873 635393502 635393474 2.000000e-03 54.7
65 TraesCS2B01G443700 chr3D 92.082 341 24 2 4093 4431 519323931 519323592 1.120000e-130 477.0
66 TraesCS2B01G443700 chr3D 87.676 284 20 6 3834 4102 519326309 519326026 2.570000e-82 316.0
67 TraesCS2B01G443700 chr3D 91.613 155 12 1 4017 4170 502156186 502156340 3.470000e-51 213.0
68 TraesCS2B01G443700 chr3D 86.508 126 14 3 599 721 602050855 602050980 7.730000e-28 135.0
69 TraesCS2B01G443700 chr3D 78.173 197 36 3 1692 1883 563633324 563633130 7.790000e-23 119.0
70 TraesCS2B01G443700 chr3D 92.063 63 5 0 3836 3898 80267865 80267803 6.100000e-14 89.8
71 TraesCS2B01G443700 chr5B 95.238 252 12 0 264 515 40414447 40414196 2.480000e-107 399.0
72 TraesCS2B01G443700 chr5B 90.698 43 4 0 3131 3173 591640713 591640671 1.720000e-04 58.4
73 TraesCS2B01G443700 chr1A 90.068 292 25 3 4141 4431 508125997 508125709 4.180000e-100 375.0
74 TraesCS2B01G443700 chr1A 85.057 261 20 5 3855 4096 508127977 508127717 9.520000e-62 248.0
75 TraesCS2B01G443700 chr1A 89.091 55 4 2 3835 3888 426073280 426073227 2.860000e-07 67.6
76 TraesCS2B01G443700 chr6D 86.842 342 29 9 3858 4184 316318851 316319191 7.000000e-98 368.0
77 TraesCS2B01G443700 chr6D 83.750 160 24 2 567 724 325421693 325421534 2.760000e-32 150.0
78 TraesCS2B01G443700 chr6D 94.286 35 2 0 3838 3872 413014854 413014888 2.000000e-03 54.7
79 TraesCS2B01G443700 chr6A 76.829 492 77 23 3836 4293 40531029 40531517 4.430000e-60 243.0
80 TraesCS2B01G443700 chr6A 79.888 179 20 12 559 724 555978887 555978712 2.800000e-22 117.0
81 TraesCS2B01G443700 chr3A 83.938 193 23 7 531 718 66217904 66218093 1.270000e-40 178.0
82 TraesCS2B01G443700 chr3A 71.933 652 146 26 1731 2366 698283041 698282411 5.930000e-34 156.0
83 TraesCS2B01G443700 chr1D 93.478 46 3 0 3834 3879 481701770 481701725 7.950000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G443700 chr2B 636761956 636766386 4430 True 8183.000000 8183 100.000000 1 4431 1 chr2B.!!$R4 4430
1 TraesCS2B01G443700 chr2B 634191504 634192677 1173 False 1507.000000 1507 89.890000 1657 2828 1 chr2B.!!$F1 1171
2 TraesCS2B01G443700 chr2B 636554677 636555842 1165 True 1014.000000 1014 82.528000 1663 2831 1 chr2B.!!$R2 1168
3 TraesCS2B01G443700 chr2B 636567600 636568927 1327 True 613.500000 741 83.616500 1513 2899 2 chr2B.!!$R5 1386
4 TraesCS2B01G443700 chr2B 636560998 636561539 541 True 449.000000 449 81.670000 2282 2831 1 chr2B.!!$R3 549
5 TraesCS2B01G443700 chr2A 678545814 678547185 1371 True 1275.000000 1275 83.563000 1510 2879 1 chr2A.!!$R4 1369
6 TraesCS2B01G443700 chr2A 678607815 678613213 5398 True 1181.025000 3978 91.474000 980 4431 4 chr2A.!!$R6 3451
7 TraesCS2B01G443700 chr2A 559619920 559620517 597 True 745.000000 745 89.309000 3833 4431 1 chr2A.!!$R2 598
8 TraesCS2B01G443700 chr2A 678449610 678450262 652 True 527.000000 527 81.420000 2282 2937 1 chr2A.!!$R3 655
9 TraesCS2B01G443700 chr2D 535477229 535479693 2464 True 1590.500000 1659 90.289500 1977 4431 2 chr2D.!!$R5 2454
10 TraesCS2B01G443700 chr2D 535285567 535286961 1394 True 1314.000000 1314 83.866000 1508 2896 1 chr2D.!!$R4 1388
11 TraesCS2B01G443700 chr2D 535238918 535239580 662 True 706.000000 706 86.295000 1508 2155 1 chr2D.!!$R3 647
12 TraesCS2B01G443700 chr2D 535555068 535559651 4583 True 565.333333 760 90.896667 535 1980 3 chr2D.!!$R6 1445
13 TraesCS2B01G443700 chr2D 13361823 13362377 554 False 544.000000 544 84.801000 3835 4395 1 chr2D.!!$F1 560
14 TraesCS2B01G443700 chr7B 648280043 648280653 610 True 754.000000 754 89.396000 3837 4431 1 chr7B.!!$R1 594
15 TraesCS2B01G443700 chr1B 679725699 679726308 609 True 754.000000 754 89.362000 3836 4431 1 chr1B.!!$R1 595
16 TraesCS2B01G443700 chr1B 175672979 175673565 586 False 647.000000 647 87.097000 3830 4399 1 chr1B.!!$F2 569
17 TraesCS2B01G443700 chr4B 437093645 437094250 605 False 728.000000 728 88.816000 3835 4425 1 chr4B.!!$F1 590
18 TraesCS2B01G443700 chr6B 720236064 720236674 610 True 719.000000 719 88.274000 3832 4431 1 chr6B.!!$R4 599
19 TraesCS2B01G443700 chr3B 661679837 661680449 612 False 717.000000 717 88.293000 3836 4431 1 chr3B.!!$F1 595
20 TraesCS2B01G443700 chr5D 340398663 340399259 596 True 688.000000 688 87.725000 3834 4431 1 chr5D.!!$R2 597
21 TraesCS2B01G443700 chr5D 444065903 444066644 741 False 291.000000 291 74.409000 1514 2255 1 chr5D.!!$F3 741
22 TraesCS2B01G443700 chr4D 485768626 485769267 641 True 413.500000 664 92.488500 3835 4431 2 chr4D.!!$R2 596
23 TraesCS2B01G443700 chr3D 519323592 519326309 2717 True 396.500000 477 89.879000 3834 4431 2 chr3D.!!$R3 597
24 TraesCS2B01G443700 chr1A 508125709 508127977 2268 True 311.500000 375 87.562500 3855 4431 2 chr1A.!!$R2 576

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
314 315 0.033894 AGTGGTCGTGGGTTGGTTTT 60.034 50.0 0.00 0.0 0.00 2.43 F
315 316 0.101579 GTGGTCGTGGGTTGGTTTTG 59.898 55.0 0.00 0.0 0.00 2.44 F
365 366 0.109781 CATGGCCTGCACGTTGTAAC 60.110 55.0 3.32 0.0 0.00 2.50 F
426 427 0.317269 TACGTGATTAGCGCCGTAGC 60.317 55.0 2.29 0.0 34.95 3.58 F
1887 7017 0.109781 CCCGCCAGTCAAAACAATCG 60.110 55.0 0.00 0.0 0.00 3.34 F
1909 7051 0.319641 GTCCGCGGTGAGAACTTCTT 60.320 55.0 27.15 0.0 0.00 2.52 F
2624 7798 0.379669 GATTCAATGCCGCTGTCTGG 59.620 55.0 0.00 0.0 0.00 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1463 6575 0.179092 GTGGGTGGTACGGTGCTATC 60.179 60.000 0.00 0.00 0.00 2.08 R
1472 6584 0.738412 CCATCGTTCGTGGGTGGTAC 60.738 60.000 6.13 0.00 32.98 3.34 R
1473 6585 0.899253 TCCATCGTTCGTGGGTGGTA 60.899 55.000 11.50 0.00 37.34 3.25 R
2309 7483 1.053835 TCCACACCTGCAGGAGTTGA 61.054 55.000 39.19 31.95 36.88 3.18 R
2950 8129 0.674534 GTGGACCAGACTCGTGAGTT 59.325 55.000 3.69 0.00 42.66 3.01 R
2956 8135 0.818296 CCTTAGGTGGACCAGACTCG 59.182 60.000 0.00 0.00 38.89 4.18 R
3616 8824 2.422597 TCCTTGCAACGTGAAGGTATG 58.577 47.619 16.73 0.00 39.91 2.39 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.496675 GTGATTAAGGGGGTGAGGC 57.503 57.895 0.00 0.00 0.00 4.70
19 20 0.463833 GTGATTAAGGGGGTGAGGCG 60.464 60.000 0.00 0.00 0.00 5.52
20 21 1.148498 GATTAAGGGGGTGAGGCGG 59.852 63.158 0.00 0.00 0.00 6.13
23 24 1.428718 TTAAGGGGGTGAGGCGGTTT 61.429 55.000 0.00 0.00 0.00 3.27
24 25 2.132089 TAAGGGGGTGAGGCGGTTTG 62.132 60.000 0.00 0.00 0.00 2.93
40 41 3.654143 TGGCTCCTGGCAGCACAT 61.654 61.111 9.56 0.00 44.10 3.21
41 42 3.138798 GGCTCCTGGCAGCACATG 61.139 66.667 9.56 0.00 41.65 3.21
52 53 4.294523 GCACATGCTCCCGTGTAA 57.705 55.556 0.00 0.00 39.12 2.41
53 54 2.550487 GCACATGCTCCCGTGTAAA 58.450 52.632 0.00 0.00 39.12 2.01
54 55 0.168128 GCACATGCTCCCGTGTAAAC 59.832 55.000 0.00 0.00 39.12 2.01
55 56 1.518325 CACATGCTCCCGTGTAAACA 58.482 50.000 0.00 0.00 39.12 2.83
56 57 1.876799 CACATGCTCCCGTGTAAACAA 59.123 47.619 0.00 0.00 39.12 2.83
57 58 1.877443 ACATGCTCCCGTGTAAACAAC 59.123 47.619 0.00 0.00 39.36 3.32
58 59 1.876799 CATGCTCCCGTGTAAACAACA 59.123 47.619 0.00 0.00 35.06 3.33
59 60 2.039818 TGCTCCCGTGTAAACAACAA 57.960 45.000 0.00 0.00 40.63 2.83
60 61 2.577700 TGCTCCCGTGTAAACAACAAT 58.422 42.857 0.00 0.00 40.63 2.71
61 62 3.741249 TGCTCCCGTGTAAACAACAATA 58.259 40.909 0.00 0.00 40.63 1.90
62 63 4.328536 TGCTCCCGTGTAAACAACAATAT 58.671 39.130 0.00 0.00 40.63 1.28
63 64 4.762765 TGCTCCCGTGTAAACAACAATATT 59.237 37.500 0.00 0.00 40.63 1.28
64 65 5.241949 TGCTCCCGTGTAAACAACAATATTT 59.758 36.000 0.00 0.00 40.63 1.40
65 66 6.153756 GCTCCCGTGTAAACAACAATATTTT 58.846 36.000 0.00 0.00 40.63 1.82
66 67 7.040617 TGCTCCCGTGTAAACAACAATATTTTA 60.041 33.333 0.00 0.00 40.63 1.52
67 68 7.808856 GCTCCCGTGTAAACAACAATATTTTAA 59.191 33.333 0.00 0.00 40.63 1.52
68 69 9.680315 CTCCCGTGTAAACAACAATATTTTAAA 57.320 29.630 0.00 0.00 40.63 1.52
75 76 9.809928 GTAAACAACAATATTTTAAATAGCGCG 57.190 29.630 0.00 0.00 0.00 6.86
76 77 6.490877 ACAACAATATTTTAAATAGCGCGC 57.509 33.333 26.66 26.66 0.00 6.86
77 78 6.262601 ACAACAATATTTTAAATAGCGCGCT 58.737 32.000 38.01 38.01 0.00 5.92
78 79 7.411274 ACAACAATATTTTAAATAGCGCGCTA 58.589 30.769 39.72 39.72 0.00 4.26
79 80 7.375017 ACAACAATATTTTAAATAGCGCGCTAC 59.625 33.333 40.42 8.79 0.00 3.58
80 81 6.950545 ACAATATTTTAAATAGCGCGCTACA 58.049 32.000 40.42 24.82 0.00 2.74
81 82 7.411274 ACAATATTTTAAATAGCGCGCTACAA 58.589 30.769 40.42 29.39 0.00 2.41
82 83 7.911205 ACAATATTTTAAATAGCGCGCTACAAA 59.089 29.630 40.42 32.46 0.00 2.83
83 84 8.738554 CAATATTTTAAATAGCGCGCTACAAAA 58.261 29.630 40.42 36.72 0.00 2.44
84 85 9.458374 AATATTTTAAATAGCGCGCTACAAAAT 57.542 25.926 38.12 38.12 35.03 1.82
88 89 9.588774 TTTTAAATAGCGCGCTACAAAATATAG 57.411 29.630 40.42 0.00 0.00 1.31
89 90 4.842139 ATAGCGCGCTACAAAATATAGC 57.158 40.909 40.42 2.19 41.43 2.97
96 97 2.742589 GCTACAAAATATAGCGAGGCCC 59.257 50.000 0.00 0.00 36.02 5.80
97 98 3.557264 GCTACAAAATATAGCGAGGCCCT 60.557 47.826 0.00 0.00 36.02 5.19
98 99 3.577805 ACAAAATATAGCGAGGCCCTT 57.422 42.857 0.00 0.00 0.00 3.95
99 100 3.477530 ACAAAATATAGCGAGGCCCTTC 58.522 45.455 0.00 0.00 0.00 3.46
100 101 3.136626 ACAAAATATAGCGAGGCCCTTCT 59.863 43.478 0.00 0.00 0.00 2.85
101 102 3.686916 AAATATAGCGAGGCCCTTCTC 57.313 47.619 0.00 0.00 0.00 2.87
102 103 2.614134 ATATAGCGAGGCCCTTCTCT 57.386 50.000 0.00 0.00 0.00 3.10
103 104 3.741245 ATATAGCGAGGCCCTTCTCTA 57.259 47.619 0.00 0.00 0.00 2.43
104 105 2.383442 ATAGCGAGGCCCTTCTCTAA 57.617 50.000 0.00 0.00 0.00 2.10
105 106 2.154567 TAGCGAGGCCCTTCTCTAAA 57.845 50.000 0.00 0.00 0.00 1.85
106 107 1.501582 AGCGAGGCCCTTCTCTAAAT 58.498 50.000 0.00 0.00 0.00 1.40
107 108 1.139853 AGCGAGGCCCTTCTCTAAATG 59.860 52.381 0.00 0.00 0.00 2.32
108 109 1.587547 CGAGGCCCTTCTCTAAATGC 58.412 55.000 0.00 0.00 0.00 3.56
109 110 1.139853 CGAGGCCCTTCTCTAAATGCT 59.860 52.381 0.00 0.00 0.00 3.79
110 111 2.365617 CGAGGCCCTTCTCTAAATGCTA 59.634 50.000 0.00 0.00 0.00 3.49
111 112 3.734463 GAGGCCCTTCTCTAAATGCTAC 58.266 50.000 0.00 0.00 0.00 3.58
112 113 3.115390 AGGCCCTTCTCTAAATGCTACA 58.885 45.455 0.00 0.00 0.00 2.74
113 114 3.118223 AGGCCCTTCTCTAAATGCTACAC 60.118 47.826 0.00 0.00 0.00 2.90
114 115 3.370527 GGCCCTTCTCTAAATGCTACACA 60.371 47.826 0.00 0.00 0.00 3.72
115 116 4.261801 GCCCTTCTCTAAATGCTACACAA 58.738 43.478 0.00 0.00 0.00 3.33
116 117 4.333926 GCCCTTCTCTAAATGCTACACAAG 59.666 45.833 0.00 0.00 0.00 3.16
117 118 5.491982 CCCTTCTCTAAATGCTACACAAGT 58.508 41.667 0.00 0.00 0.00 3.16
118 119 5.940470 CCCTTCTCTAAATGCTACACAAGTT 59.060 40.000 0.00 0.00 0.00 2.66
119 120 7.103641 CCCTTCTCTAAATGCTACACAAGTTA 58.896 38.462 0.00 0.00 0.00 2.24
120 121 7.770897 CCCTTCTCTAAATGCTACACAAGTTAT 59.229 37.037 0.00 0.00 0.00 1.89
121 122 9.817809 CCTTCTCTAAATGCTACACAAGTTATA 57.182 33.333 0.00 0.00 0.00 0.98
123 124 8.873215 TCTCTAAATGCTACACAAGTTATAGC 57.127 34.615 6.38 6.38 41.44 2.97
124 125 7.648112 TCTCTAAATGCTACACAAGTTATAGCG 59.352 37.037 8.10 0.00 43.53 4.26
125 126 4.795970 AATGCTACACAAGTTATAGCGC 57.204 40.909 0.00 0.00 43.53 5.92
126 127 2.190161 TGCTACACAAGTTATAGCGCG 58.810 47.619 0.00 0.00 43.53 6.86
127 128 1.071436 GCTACACAAGTTATAGCGCGC 60.071 52.381 26.66 26.66 32.61 6.86
128 129 2.460918 CTACACAAGTTATAGCGCGCT 58.539 47.619 38.01 38.01 0.00 5.92
129 130 2.572191 ACACAAGTTATAGCGCGCTA 57.428 45.000 39.72 39.72 0.00 4.26
130 131 2.883574 ACACAAGTTATAGCGCGCTAA 58.116 42.857 40.90 27.16 31.73 3.09
131 132 3.454375 ACACAAGTTATAGCGCGCTAAT 58.546 40.909 40.90 29.53 31.73 1.73
132 133 4.613944 ACACAAGTTATAGCGCGCTAATA 58.386 39.130 40.90 28.70 31.73 0.98
133 134 4.680110 ACACAAGTTATAGCGCGCTAATAG 59.320 41.667 40.90 27.66 31.73 1.73
134 135 3.673809 ACAAGTTATAGCGCGCTAATAGC 59.326 43.478 40.90 30.23 38.02 2.97
222 223 9.855021 TTAAGCAACTAAAATTTTCATAGGAGC 57.145 29.630 6.72 8.05 0.00 4.70
223 224 7.466746 AGCAACTAAAATTTTCATAGGAGCA 57.533 32.000 6.72 0.00 0.00 4.26
224 225 7.895759 AGCAACTAAAATTTTCATAGGAGCAA 58.104 30.769 6.72 0.00 0.00 3.91
225 226 8.031277 AGCAACTAAAATTTTCATAGGAGCAAG 58.969 33.333 6.72 0.00 0.00 4.01
226 227 7.201470 GCAACTAAAATTTTCATAGGAGCAAGC 60.201 37.037 6.72 0.51 0.00 4.01
227 228 7.466746 ACTAAAATTTTCATAGGAGCAAGCA 57.533 32.000 6.72 0.00 0.00 3.91
228 229 7.895759 ACTAAAATTTTCATAGGAGCAAGCAA 58.104 30.769 6.72 0.00 0.00 3.91
229 230 8.534496 ACTAAAATTTTCATAGGAGCAAGCAAT 58.466 29.630 6.72 0.00 0.00 3.56
251 252 8.563123 CAATATATGCATCTGATGAAAGGAGT 57.437 34.615 21.30 0.00 0.00 3.85
252 253 8.451748 CAATATATGCATCTGATGAAAGGAGTG 58.548 37.037 21.30 8.23 0.00 3.51
253 254 3.986996 TGCATCTGATGAAAGGAGTGA 57.013 42.857 21.30 0.00 0.00 3.41
254 255 3.870274 TGCATCTGATGAAAGGAGTGAG 58.130 45.455 21.30 0.00 0.00 3.51
255 256 3.516700 TGCATCTGATGAAAGGAGTGAGA 59.483 43.478 21.30 0.00 0.00 3.27
256 257 4.019950 TGCATCTGATGAAAGGAGTGAGAA 60.020 41.667 21.30 0.00 0.00 2.87
257 258 4.940046 GCATCTGATGAAAGGAGTGAGAAA 59.060 41.667 21.30 0.00 0.00 2.52
258 259 5.064962 GCATCTGATGAAAGGAGTGAGAAAG 59.935 44.000 21.30 0.00 0.00 2.62
259 260 4.573900 TCTGATGAAAGGAGTGAGAAAGC 58.426 43.478 0.00 0.00 0.00 3.51
260 261 4.285517 TCTGATGAAAGGAGTGAGAAAGCT 59.714 41.667 0.00 0.00 0.00 3.74
261 262 5.481824 TCTGATGAAAGGAGTGAGAAAGCTA 59.518 40.000 0.00 0.00 0.00 3.32
262 263 5.482908 TGATGAAAGGAGTGAGAAAGCTAC 58.517 41.667 0.00 0.00 0.00 3.58
263 264 5.247110 TGATGAAAGGAGTGAGAAAGCTACT 59.753 40.000 0.00 0.00 0.00 2.57
264 265 4.887748 TGAAAGGAGTGAGAAAGCTACTG 58.112 43.478 0.00 0.00 0.00 2.74
265 266 3.971245 AAGGAGTGAGAAAGCTACTGG 57.029 47.619 0.00 0.00 0.00 4.00
266 267 2.183679 AGGAGTGAGAAAGCTACTGGG 58.816 52.381 0.00 0.00 0.00 4.45
267 268 2.180276 GGAGTGAGAAAGCTACTGGGA 58.820 52.381 0.00 0.00 0.00 4.37
268 269 2.167487 GGAGTGAGAAAGCTACTGGGAG 59.833 54.545 0.00 0.00 0.00 4.30
269 270 3.093057 GAGTGAGAAAGCTACTGGGAGA 58.907 50.000 0.00 0.00 0.00 3.71
270 271 3.511477 AGTGAGAAAGCTACTGGGAGAA 58.489 45.455 0.00 0.00 0.00 2.87
271 272 4.100373 AGTGAGAAAGCTACTGGGAGAAT 58.900 43.478 0.00 0.00 0.00 2.40
272 273 4.161377 AGTGAGAAAGCTACTGGGAGAATC 59.839 45.833 0.00 0.00 0.00 2.52
273 274 4.161377 GTGAGAAAGCTACTGGGAGAATCT 59.839 45.833 0.00 0.00 33.73 2.40
274 275 4.161189 TGAGAAAGCTACTGGGAGAATCTG 59.839 45.833 0.00 0.00 33.73 2.90
275 276 4.357325 AGAAAGCTACTGGGAGAATCTGA 58.643 43.478 0.00 0.00 33.73 3.27
276 277 4.968080 AGAAAGCTACTGGGAGAATCTGAT 59.032 41.667 0.00 0.00 33.73 2.90
277 278 6.139671 AGAAAGCTACTGGGAGAATCTGATA 58.860 40.000 0.00 0.00 33.73 2.15
278 279 6.613271 AGAAAGCTACTGGGAGAATCTGATAA 59.387 38.462 0.00 0.00 33.73 1.75
279 280 6.814954 AAGCTACTGGGAGAATCTGATAAA 57.185 37.500 0.00 0.00 33.73 1.40
280 281 6.814954 AGCTACTGGGAGAATCTGATAAAA 57.185 37.500 0.00 0.00 33.73 1.52
281 282 6.825610 AGCTACTGGGAGAATCTGATAAAAG 58.174 40.000 0.00 0.00 33.73 2.27
282 283 6.613271 AGCTACTGGGAGAATCTGATAAAAGA 59.387 38.462 0.00 0.00 33.73 2.52
283 284 7.126421 AGCTACTGGGAGAATCTGATAAAAGAA 59.874 37.037 0.00 0.00 33.73 2.52
284 285 7.440856 GCTACTGGGAGAATCTGATAAAAGAAG 59.559 40.741 0.00 0.00 33.73 2.85
285 286 7.264294 ACTGGGAGAATCTGATAAAAGAAGT 57.736 36.000 0.00 0.00 33.73 3.01
286 287 7.108847 ACTGGGAGAATCTGATAAAAGAAGTG 58.891 38.462 0.00 0.00 33.73 3.16
287 288 7.038017 ACTGGGAGAATCTGATAAAAGAAGTGA 60.038 37.037 0.00 0.00 33.73 3.41
288 289 7.334090 TGGGAGAATCTGATAAAAGAAGTGAG 58.666 38.462 0.00 0.00 33.73 3.51
289 290 7.180946 TGGGAGAATCTGATAAAAGAAGTGAGA 59.819 37.037 0.00 0.00 33.73 3.27
290 291 8.043710 GGGAGAATCTGATAAAAGAAGTGAGAA 58.956 37.037 0.00 0.00 33.73 2.87
291 292 9.442047 GGAGAATCTGATAAAAGAAGTGAGAAA 57.558 33.333 0.00 0.00 33.73 2.52
293 294 8.945057 AGAATCTGATAAAAGAAGTGAGAAAGC 58.055 33.333 0.00 0.00 0.00 3.51
294 295 8.860780 AATCTGATAAAAGAAGTGAGAAAGCT 57.139 30.769 0.00 0.00 0.00 3.74
295 296 9.950496 AATCTGATAAAAGAAGTGAGAAAGCTA 57.050 29.630 0.00 0.00 0.00 3.32
296 297 8.994429 TCTGATAAAAGAAGTGAGAAAGCTAG 57.006 34.615 0.00 0.00 0.00 3.42
297 298 8.589338 TCTGATAAAAGAAGTGAGAAAGCTAGT 58.411 33.333 0.00 0.00 0.00 2.57
298 299 8.539770 TGATAAAAGAAGTGAGAAAGCTAGTG 57.460 34.615 0.00 0.00 0.00 2.74
299 300 7.604164 TGATAAAAGAAGTGAGAAAGCTAGTGG 59.396 37.037 0.00 0.00 0.00 4.00
300 301 4.965200 AAGAAGTGAGAAAGCTAGTGGT 57.035 40.909 0.00 0.00 0.00 4.16
301 302 4.529109 AGAAGTGAGAAAGCTAGTGGTC 57.471 45.455 0.00 0.00 0.00 4.02
302 303 3.057174 AGAAGTGAGAAAGCTAGTGGTCG 60.057 47.826 0.00 0.00 0.00 4.79
303 304 2.240279 AGTGAGAAAGCTAGTGGTCGT 58.760 47.619 0.00 0.00 0.00 4.34
304 305 2.029828 AGTGAGAAAGCTAGTGGTCGTG 60.030 50.000 0.00 0.00 0.00 4.35
305 306 1.272490 TGAGAAAGCTAGTGGTCGTGG 59.728 52.381 0.00 0.00 0.00 4.94
306 307 0.608640 AGAAAGCTAGTGGTCGTGGG 59.391 55.000 0.00 0.00 0.00 4.61
307 308 0.320697 GAAAGCTAGTGGTCGTGGGT 59.679 55.000 0.00 0.00 0.00 4.51
308 309 0.763035 AAAGCTAGTGGTCGTGGGTT 59.237 50.000 0.00 0.00 0.00 4.11
309 310 0.034896 AAGCTAGTGGTCGTGGGTTG 59.965 55.000 0.00 0.00 0.00 3.77
310 311 1.375523 GCTAGTGGTCGTGGGTTGG 60.376 63.158 0.00 0.00 0.00 3.77
311 312 2.055299 CTAGTGGTCGTGGGTTGGT 58.945 57.895 0.00 0.00 0.00 3.67
312 313 0.395312 CTAGTGGTCGTGGGTTGGTT 59.605 55.000 0.00 0.00 0.00 3.67
313 314 0.838608 TAGTGGTCGTGGGTTGGTTT 59.161 50.000 0.00 0.00 0.00 3.27
314 315 0.033894 AGTGGTCGTGGGTTGGTTTT 60.034 50.000 0.00 0.00 0.00 2.43
315 316 0.101579 GTGGTCGTGGGTTGGTTTTG 59.898 55.000 0.00 0.00 0.00 2.44
316 317 1.038130 TGGTCGTGGGTTGGTTTTGG 61.038 55.000 0.00 0.00 0.00 3.28
317 318 1.066752 GTCGTGGGTTGGTTTTGGC 59.933 57.895 0.00 0.00 0.00 4.52
318 319 2.128507 TCGTGGGTTGGTTTTGGCC 61.129 57.895 0.00 0.00 0.00 5.36
319 320 2.131067 CGTGGGTTGGTTTTGGCCT 61.131 57.895 3.32 0.00 0.00 5.19
320 321 1.445518 GTGGGTTGGTTTTGGCCTG 59.554 57.895 3.32 0.00 0.00 4.85
321 322 2.425592 GGGTTGGTTTTGGCCTGC 59.574 61.111 3.32 0.00 0.00 4.85
322 323 2.140138 GGGTTGGTTTTGGCCTGCT 61.140 57.895 3.32 0.00 0.00 4.24
323 324 1.069596 GGTTGGTTTTGGCCTGCTG 59.930 57.895 3.32 0.00 0.00 4.41
324 325 1.069596 GTTGGTTTTGGCCTGCTGG 59.930 57.895 3.32 5.03 0.00 4.85
325 326 2.139484 TTGGTTTTGGCCTGCTGGG 61.139 57.895 12.06 1.66 38.36 4.45
334 335 2.352422 CCTGCTGGGCTGTGCTTA 59.648 61.111 0.71 0.00 0.00 3.09
335 336 1.077212 CCTGCTGGGCTGTGCTTAT 60.077 57.895 0.71 0.00 0.00 1.73
336 337 0.682209 CCTGCTGGGCTGTGCTTATT 60.682 55.000 0.71 0.00 0.00 1.40
337 338 1.180029 CTGCTGGGCTGTGCTTATTT 58.820 50.000 0.00 0.00 0.00 1.40
338 339 1.133790 CTGCTGGGCTGTGCTTATTTC 59.866 52.381 0.00 0.00 0.00 2.17
339 340 1.176527 GCTGGGCTGTGCTTATTTCA 58.823 50.000 0.00 0.00 0.00 2.69
340 341 1.133790 GCTGGGCTGTGCTTATTTCAG 59.866 52.381 0.00 0.00 0.00 3.02
341 342 2.440409 CTGGGCTGTGCTTATTTCAGT 58.560 47.619 0.00 0.00 0.00 3.41
342 343 2.821969 CTGGGCTGTGCTTATTTCAGTT 59.178 45.455 0.00 0.00 0.00 3.16
343 344 3.230134 TGGGCTGTGCTTATTTCAGTTT 58.770 40.909 0.00 0.00 0.00 2.66
344 345 3.640967 TGGGCTGTGCTTATTTCAGTTTT 59.359 39.130 0.00 0.00 0.00 2.43
345 346 3.989817 GGGCTGTGCTTATTTCAGTTTTG 59.010 43.478 0.00 0.00 0.00 2.44
346 347 3.429881 GGCTGTGCTTATTTCAGTTTTGC 59.570 43.478 0.00 0.00 0.00 3.68
347 348 4.050553 GCTGTGCTTATTTCAGTTTTGCA 58.949 39.130 0.00 0.00 0.00 4.08
348 349 4.687483 GCTGTGCTTATTTCAGTTTTGCAT 59.313 37.500 0.00 0.00 0.00 3.96
349 350 5.389098 GCTGTGCTTATTTCAGTTTTGCATG 60.389 40.000 0.00 0.00 0.00 4.06
350 351 4.989797 TGTGCTTATTTCAGTTTTGCATGG 59.010 37.500 0.00 0.00 0.00 3.66
351 352 3.995705 TGCTTATTTCAGTTTTGCATGGC 59.004 39.130 0.00 0.00 0.00 4.40
352 353 3.371898 GCTTATTTCAGTTTTGCATGGCC 59.628 43.478 0.00 0.00 0.00 5.36
353 354 4.824289 CTTATTTCAGTTTTGCATGGCCT 58.176 39.130 3.32 0.00 0.00 5.19
354 355 2.529780 TTTCAGTTTTGCATGGCCTG 57.470 45.000 3.32 0.34 0.00 4.85
363 364 3.979789 CATGGCCTGCACGTTGTA 58.020 55.556 3.32 0.00 0.00 2.41
364 365 2.252556 CATGGCCTGCACGTTGTAA 58.747 52.632 3.32 0.00 0.00 2.41
365 366 0.109781 CATGGCCTGCACGTTGTAAC 60.110 55.000 3.32 0.00 0.00 2.50
394 395 3.891583 CGTTACAACGTTATAGCGTGTG 58.108 45.455 15.60 16.16 46.63 3.82
395 396 3.361644 CGTTACAACGTTATAGCGTGTGT 59.638 43.478 22.53 22.53 46.63 3.72
396 397 4.553045 CGTTACAACGTTATAGCGTGTGTA 59.447 41.667 15.60 19.25 46.63 2.90
397 398 5.274959 CGTTACAACGTTATAGCGTGTGTAG 60.275 44.000 22.52 15.34 46.63 2.74
398 399 2.919229 ACAACGTTATAGCGTGTGTAGC 59.081 45.455 15.60 0.00 45.00 3.58
399 400 1.818850 ACGTTATAGCGTGTGTAGCG 58.181 50.000 14.14 0.00 43.99 4.26
406 407 3.688136 CGTGTGTAGCGCGCTAAT 58.312 55.556 39.73 19.77 44.35 1.73
407 408 1.995991 CGTGTGTAGCGCGCTAATT 59.004 52.632 39.73 19.37 44.35 1.40
408 409 1.193644 CGTGTGTAGCGCGCTAATTA 58.806 50.000 39.73 26.04 44.35 1.40
409 410 1.072348 CGTGTGTAGCGCGCTAATTAC 60.072 52.381 39.73 33.48 44.35 1.89
410 411 1.072348 GTGTGTAGCGCGCTAATTACG 60.072 52.381 39.73 0.00 0.00 3.18
411 412 1.194495 GTGTAGCGCGCTAATTACGT 58.806 50.000 39.73 16.53 0.00 3.57
412 413 1.072348 GTGTAGCGCGCTAATTACGTG 60.072 52.381 39.73 13.23 43.59 4.49
413 414 1.202166 TGTAGCGCGCTAATTACGTGA 60.202 47.619 39.73 16.67 43.44 4.35
414 415 2.049228 GTAGCGCGCTAATTACGTGAT 58.951 47.619 39.73 14.38 43.44 3.06
415 416 1.567504 AGCGCGCTAATTACGTGATT 58.432 45.000 35.79 10.64 43.44 2.57
416 417 2.734670 AGCGCGCTAATTACGTGATTA 58.265 42.857 35.79 11.75 43.44 1.75
417 418 2.724690 AGCGCGCTAATTACGTGATTAG 59.275 45.455 35.79 27.16 43.44 1.73
422 423 3.683115 CTAATTACGTGATTAGCGCCG 57.317 47.619 22.43 0.84 34.05 6.46
423 424 1.930567 AATTACGTGATTAGCGCCGT 58.069 45.000 2.29 8.23 37.33 5.68
424 425 2.780065 ATTACGTGATTAGCGCCGTA 57.220 45.000 2.29 7.05 34.95 4.02
425 426 2.109609 TTACGTGATTAGCGCCGTAG 57.890 50.000 2.29 0.00 37.14 3.51
426 427 0.317269 TACGTGATTAGCGCCGTAGC 60.317 55.000 2.29 0.00 34.95 3.58
437 438 3.877801 GCCGTAGCGTCTGATTTTG 57.122 52.632 0.00 0.00 0.00 2.44
438 439 1.076332 GCCGTAGCGTCTGATTTTGT 58.924 50.000 0.00 0.00 0.00 2.83
439 440 1.060698 GCCGTAGCGTCTGATTTTGTC 59.939 52.381 0.00 0.00 0.00 3.18
440 441 2.333926 CCGTAGCGTCTGATTTTGTCA 58.666 47.619 0.00 0.00 35.05 3.58
441 442 2.734606 CCGTAGCGTCTGATTTTGTCAA 59.265 45.455 0.00 0.00 36.14 3.18
442 443 3.185594 CCGTAGCGTCTGATTTTGTCAAA 59.814 43.478 0.00 0.00 36.14 2.69
443 444 4.319190 CCGTAGCGTCTGATTTTGTCAAAA 60.319 41.667 12.97 12.97 36.14 2.44
444 445 4.607235 CGTAGCGTCTGATTTTGTCAAAAC 59.393 41.667 12.86 7.97 36.14 2.43
445 446 3.617669 AGCGTCTGATTTTGTCAAAACG 58.382 40.909 12.86 12.85 43.50 3.60
446 447 3.064820 AGCGTCTGATTTTGTCAAAACGT 59.935 39.130 12.86 0.00 43.02 3.99
447 448 4.271533 AGCGTCTGATTTTGTCAAAACGTA 59.728 37.500 12.86 2.41 43.02 3.57
448 449 4.965158 GCGTCTGATTTTGTCAAAACGTAA 59.035 37.500 12.86 0.00 43.02 3.18
449 450 5.108891 GCGTCTGATTTTGTCAAAACGTAAC 60.109 40.000 12.86 8.59 43.02 2.50
450 451 5.111465 CGTCTGATTTTGTCAAAACGTAACG 59.889 40.000 12.86 15.20 39.42 3.18
451 452 5.961263 GTCTGATTTTGTCAAAACGTAACGT 59.039 36.000 12.86 0.00 37.89 3.99
452 453 6.138081 GTCTGATTTTGTCAAAACGTAACGTC 59.862 38.462 12.86 5.87 36.12 4.34
453 454 6.036300 TCTGATTTTGTCAAAACGTAACGTCT 59.964 34.615 12.86 0.00 36.12 4.18
454 455 6.186785 TGATTTTGTCAAAACGTAACGTCTC 58.813 36.000 12.86 4.57 34.34 3.36
455 456 4.519191 TTTGTCAAAACGTAACGTCTCC 57.481 40.909 0.00 0.00 39.99 3.71
456 457 2.472816 TGTCAAAACGTAACGTCTCCC 58.527 47.619 0.00 0.00 39.99 4.30
457 458 2.101249 TGTCAAAACGTAACGTCTCCCT 59.899 45.455 0.00 0.00 39.99 4.20
458 459 3.126073 GTCAAAACGTAACGTCTCCCTT 58.874 45.455 0.00 0.00 39.99 3.95
459 460 3.183172 GTCAAAACGTAACGTCTCCCTTC 59.817 47.826 0.00 0.00 39.99 3.46
460 461 2.445565 AAACGTAACGTCTCCCTTCC 57.554 50.000 0.00 0.00 39.99 3.46
461 462 1.331214 AACGTAACGTCTCCCTTCCA 58.669 50.000 0.00 0.00 39.99 3.53
462 463 1.331214 ACGTAACGTCTCCCTTCCAA 58.669 50.000 0.00 0.00 33.69 3.53
463 464 1.688197 ACGTAACGTCTCCCTTCCAAA 59.312 47.619 0.00 0.00 33.69 3.28
464 465 2.301009 ACGTAACGTCTCCCTTCCAAAT 59.699 45.455 0.00 0.00 33.69 2.32
465 466 3.511146 ACGTAACGTCTCCCTTCCAAATA 59.489 43.478 0.00 0.00 33.69 1.40
466 467 4.161001 ACGTAACGTCTCCCTTCCAAATAT 59.839 41.667 0.00 0.00 33.69 1.28
467 468 4.506654 CGTAACGTCTCCCTTCCAAATATG 59.493 45.833 0.00 0.00 0.00 1.78
468 469 2.919228 ACGTCTCCCTTCCAAATATGC 58.081 47.619 0.00 0.00 0.00 3.14
469 470 2.505819 ACGTCTCCCTTCCAAATATGCT 59.494 45.455 0.00 0.00 0.00 3.79
470 471 3.709653 ACGTCTCCCTTCCAAATATGCTA 59.290 43.478 0.00 0.00 0.00 3.49
471 472 4.348168 ACGTCTCCCTTCCAAATATGCTAT 59.652 41.667 0.00 0.00 0.00 2.97
472 473 5.542635 ACGTCTCCCTTCCAAATATGCTATA 59.457 40.000 0.00 0.00 0.00 1.31
473 474 6.042781 ACGTCTCCCTTCCAAATATGCTATAA 59.957 38.462 0.00 0.00 0.00 0.98
474 475 6.369065 CGTCTCCCTTCCAAATATGCTATAAC 59.631 42.308 0.00 0.00 0.00 1.89
475 476 6.655425 GTCTCCCTTCCAAATATGCTATAACC 59.345 42.308 0.00 0.00 0.00 2.85
476 477 5.556915 TCCCTTCCAAATATGCTATAACCG 58.443 41.667 0.00 0.00 0.00 4.44
477 478 4.156008 CCCTTCCAAATATGCTATAACCGC 59.844 45.833 0.00 0.00 0.00 5.68
478 479 4.142902 CCTTCCAAATATGCTATAACCGCG 60.143 45.833 0.00 0.00 0.00 6.46
479 480 3.997762 TCCAAATATGCTATAACCGCGT 58.002 40.909 4.92 0.00 0.00 6.01
480 481 4.382291 TCCAAATATGCTATAACCGCGTT 58.618 39.130 4.92 1.95 0.00 4.84
481 482 5.539979 TCCAAATATGCTATAACCGCGTTA 58.460 37.500 4.92 4.43 32.36 3.18
482 483 6.167685 TCCAAATATGCTATAACCGCGTTAT 58.832 36.000 4.92 11.68 41.02 1.89
483 484 7.321908 TCCAAATATGCTATAACCGCGTTATA 58.678 34.615 4.92 12.18 39.18 0.98
484 485 7.818446 TCCAAATATGCTATAACCGCGTTATAA 59.182 33.333 4.92 1.10 39.49 0.98
485 486 8.609176 CCAAATATGCTATAACCGCGTTATAAT 58.391 33.333 4.92 7.79 39.49 1.28
486 487 9.420966 CAAATATGCTATAACCGCGTTATAATG 57.579 33.333 4.92 0.00 39.49 1.90
487 488 7.709269 ATATGCTATAACCGCGTTATAATGG 57.291 36.000 4.92 3.72 39.49 3.16
488 489 3.680937 TGCTATAACCGCGTTATAATGGC 59.319 43.478 4.92 12.75 39.49 4.40
497 498 3.404564 GCGTTATAATGGCGAAATAGCG 58.595 45.455 6.81 6.41 38.18 4.26
498 499 3.120786 GCGTTATAATGGCGAAATAGCGT 60.121 43.478 6.81 0.00 38.18 5.07
499 500 4.382831 CGTTATAATGGCGAAATAGCGTG 58.617 43.478 0.00 0.00 38.18 5.34
500 501 2.969443 ATAATGGCGAAATAGCGTGC 57.031 45.000 0.00 0.00 38.18 5.34
501 502 1.948104 TAATGGCGAAATAGCGTGCT 58.052 45.000 0.00 0.00 38.18 4.40
502 503 1.948104 AATGGCGAAATAGCGTGCTA 58.052 45.000 3.73 3.73 38.18 3.49
503 504 2.169832 ATGGCGAAATAGCGTGCTAT 57.830 45.000 8.54 8.54 40.63 2.97
520 521 9.511144 AGCGTGCTATTTAAAATATTGGTAAAC 57.489 29.630 0.00 0.00 0.00 2.01
521 522 9.291664 GCGTGCTATTTAAAATATTGGTAAACA 57.708 29.630 6.70 0.00 0.00 2.83
585 586 8.964420 AAATATTTTGTGGATGTTCGTGTTAG 57.036 30.769 0.00 0.00 0.00 2.34
589 590 3.799366 TGTGGATGTTCGTGTTAGTGTT 58.201 40.909 0.00 0.00 0.00 3.32
592 593 2.806244 GGATGTTCGTGTTAGTGTTGCT 59.194 45.455 0.00 0.00 0.00 3.91
597 598 3.100658 TCGTGTTAGTGTTGCTAGCAA 57.899 42.857 26.06 26.06 41.46 3.91
625 626 4.156350 GCAATTTTCATGCGAAACGGAGT 61.156 43.478 0.00 0.00 40.84 3.85
630 631 3.760693 ATGCGAAACGGAGTAGCAT 57.239 47.368 0.00 0.00 45.00 3.79
632 633 1.075542 TGCGAAACGGAGTAGCATTG 58.924 50.000 0.00 0.00 45.00 2.82
637 638 3.185594 CGAAACGGAGTAGCATTGTTTCA 59.814 43.478 14.23 0.00 45.00 2.69
640 641 2.930040 ACGGAGTAGCATTGTTTCATCG 59.070 45.455 0.00 0.00 41.94 3.84
657 658 8.812329 TGTTTCATCGGTAAAAAGACAAATTTG 58.188 29.630 16.67 16.67 0.00 2.32
701 702 6.998968 TTTTCTTTTCACATGCCAAAATGT 57.001 29.167 0.00 0.00 41.50 2.71
707 708 3.726607 TCACATGCCAAAATGTTTGACC 58.273 40.909 2.30 0.00 38.75 4.02
725 726 7.607991 TGTTTGACCTTTTTGCCTAAAAATTCA 59.392 29.630 0.00 0.00 42.89 2.57
759 760 7.846485 ACATTTCAAAAATAATTTTCGCGTGT 58.154 26.923 5.77 0.00 36.62 4.49
795 796 3.019564 CCGAGAGCCAAATTGGATTTCT 58.980 45.455 17.47 14.13 35.51 2.52
815 816 6.985188 TTCTGGATTTGAGCATACTACAAC 57.015 37.500 0.00 0.00 0.00 3.32
825 826 9.767684 TTTGAGCATACTACAACGATTTAAATG 57.232 29.630 5.17 1.06 0.00 2.32
854 855 4.843220 ATTGCTGAGTTGAAGGTGAAAG 57.157 40.909 0.00 0.00 0.00 2.62
912 923 9.288576 TCAAGAAAATTATGAGAGAAGAAGCAA 57.711 29.630 0.00 0.00 0.00 3.91
972 983 3.967332 TTTTGCGGGTAGCTAACTACT 57.033 42.857 9.06 0.00 46.77 2.57
973 984 3.515330 TTTGCGGGTAGCTAACTACTC 57.485 47.619 9.06 0.00 46.77 2.59
974 985 2.431954 TGCGGGTAGCTAACTACTCT 57.568 50.000 9.06 0.00 46.19 3.24
978 989 3.745163 GCGGGTAGCTAACTACTCTCTCT 60.745 52.174 9.06 0.00 46.19 3.10
982 2106 5.071384 GGGTAGCTAACTACTCTCTCTCTCT 59.929 48.000 9.06 0.00 45.12 3.10
1001 2125 4.278669 TCTCTCTCTGTTTCTTTAGTGCGT 59.721 41.667 0.00 0.00 0.00 5.24
1062 2189 4.819105 ACATTTGTAGGGAGAACATCGA 57.181 40.909 0.00 0.00 0.00 3.59
1063 2190 5.359194 ACATTTGTAGGGAGAACATCGAT 57.641 39.130 0.00 0.00 0.00 3.59
1064 2191 5.360591 ACATTTGTAGGGAGAACATCGATC 58.639 41.667 0.00 0.00 0.00 3.69
1114 3991 7.482743 GTCATTAGATGCACTGTTAAACATGTG 59.517 37.037 0.00 0.00 33.47 3.21
1169 4438 7.380536 TGTTGATACTTTCCTCGCTAAACTTA 58.619 34.615 0.00 0.00 0.00 2.24
1177 4446 4.563061 TCCTCGCTAAACTTACTCAAACC 58.437 43.478 0.00 0.00 0.00 3.27
1219 4488 7.986085 ATAATGCACACTACATTAGGAATCC 57.014 36.000 0.00 0.00 41.81 3.01
1221 4490 5.372343 TGCACACTACATTAGGAATCCAT 57.628 39.130 0.61 0.00 0.00 3.41
1307 4576 4.989875 ATAGCCAGCAGAGGTAATCAAT 57.010 40.909 0.00 0.00 0.00 2.57
1328 4597 1.742308 AACCTACAGCCTCCTTTCCA 58.258 50.000 0.00 0.00 0.00 3.53
1344 4613 7.069826 CCTCCTTTCCATAATCTTGGCAATAAA 59.930 37.037 0.00 0.00 36.66 1.40
1458 6570 3.626680 CTTCGAGTCAGCGCCCGAA 62.627 63.158 2.29 11.03 38.49 4.30
1459 6571 2.890847 CTTCGAGTCAGCGCCCGAAT 62.891 60.000 2.29 0.00 39.76 3.34
1460 6572 2.884087 TTCGAGTCAGCGCCCGAATC 62.884 60.000 13.21 13.21 36.31 2.52
1462 6574 4.162690 AGTCAGCGCCCGAATCCC 62.163 66.667 2.29 0.00 0.00 3.85
1465 6577 4.609018 CAGCGCCCGAATCCCGAT 62.609 66.667 2.29 0.00 41.76 4.18
1466 6578 2.915659 AGCGCCCGAATCCCGATA 60.916 61.111 2.29 0.00 41.76 2.92
1467 6579 2.432628 GCGCCCGAATCCCGATAG 60.433 66.667 0.00 0.00 41.76 2.08
1468 6580 2.432628 CGCCCGAATCCCGATAGC 60.433 66.667 0.00 0.00 41.76 2.97
1469 6581 2.741092 GCCCGAATCCCGATAGCA 59.259 61.111 0.00 0.00 41.76 3.49
1470 6582 1.668151 GCCCGAATCCCGATAGCAC 60.668 63.158 0.00 0.00 41.76 4.40
1471 6583 1.004918 CCCGAATCCCGATAGCACC 60.005 63.158 0.00 0.00 41.76 5.01
1472 6584 1.372997 CCGAATCCCGATAGCACCG 60.373 63.158 0.00 0.00 41.76 4.94
1473 6585 1.362717 CGAATCCCGATAGCACCGT 59.637 57.895 0.00 0.00 41.76 4.83
1495 6607 0.320421 CACCCACGAACGATGGAAGT 60.320 55.000 13.93 5.32 39.87 3.01
1501 6613 4.103357 CCACGAACGATGGAAGTAGTAAG 58.897 47.826 0.14 0.00 39.87 2.34
1503 6615 3.442977 ACGAACGATGGAAGTAGTAAGCT 59.557 43.478 0.14 0.00 0.00 3.74
1887 7017 0.109781 CCCGCCAGTCAAAACAATCG 60.110 55.000 0.00 0.00 0.00 3.34
1909 7051 0.319641 GTCCGCGGTGAGAACTTCTT 60.320 55.000 27.15 0.00 0.00 2.52
1914 7056 1.602165 GCGGTGAGAACTTCTTCGACA 60.602 52.381 11.70 0.00 0.00 4.35
1922 7064 3.005472 AGAACTTCTTCGACAATGACGGA 59.995 43.478 5.21 0.00 0.00 4.69
2066 7210 6.112927 TGCACTGTCCTGATTATGCATATA 57.887 37.500 7.36 0.00 38.11 0.86
2309 7483 2.261671 GTCGTCATGCCGTCAGGT 59.738 61.111 0.00 0.00 40.50 4.00
2624 7798 0.379669 GATTCAATGCCGCTGTCTGG 59.620 55.000 0.00 0.00 0.00 3.86
2840 8016 0.658829 CAAATTTTGCGTCGACGGCA 60.659 50.000 36.13 29.60 40.23 5.69
2846 8022 2.883730 GCGTCGACGGCATGCTTA 60.884 61.111 36.13 0.00 40.23 3.09
2850 8026 2.885644 CGACGGCATGCTTAGCGT 60.886 61.111 18.92 18.23 0.00 5.07
2909 8088 3.036783 GACGACGAGGAGTGGACGG 62.037 68.421 0.00 0.00 32.54 4.79
2956 8135 1.713830 GATGCCGGCGTAAACTCAC 59.286 57.895 23.94 2.84 0.00 3.51
2960 8139 1.080974 CCGGCGTAAACTCACGAGT 60.081 57.895 6.01 0.00 44.69 4.18
2961 8140 1.069378 CCGGCGTAAACTCACGAGTC 61.069 60.000 6.01 0.00 44.69 3.36
2962 8141 0.109873 CGGCGTAAACTCACGAGTCT 60.110 55.000 0.00 0.00 44.69 3.24
2967 8146 2.667724 CGTAAACTCACGAGTCTGGTCC 60.668 54.545 0.00 0.00 44.69 4.46
2968 8147 1.410004 AAACTCACGAGTCTGGTCCA 58.590 50.000 0.00 0.00 41.58 4.02
2969 8148 0.674534 AACTCACGAGTCTGGTCCAC 59.325 55.000 0.00 0.00 41.58 4.02
2971 8150 0.896019 CTCACGAGTCTGGTCCACCT 60.896 60.000 0.00 0.00 36.82 4.00
2972 8151 0.402887 TCACGAGTCTGGTCCACCTA 59.597 55.000 0.00 0.00 36.82 3.08
2985 8165 3.861797 ACCTAAGGGCCGCCGATG 61.862 66.667 2.55 0.00 35.63 3.84
2996 8176 4.467084 GCCGATGGCTTGGGACGA 62.467 66.667 5.59 0.00 46.69 4.20
3176 8358 6.841781 AGGTCCATATTACCCTTTATGTGT 57.158 37.500 0.00 0.00 37.77 3.72
3212 8395 4.961438 AATTGGGCTTTTTGATCACACT 57.039 36.364 0.00 0.00 0.00 3.55
3213 8396 4.961438 ATTGGGCTTTTTGATCACACTT 57.039 36.364 0.00 0.00 0.00 3.16
3214 8397 6.418057 AATTGGGCTTTTTGATCACACTTA 57.582 33.333 0.00 0.00 0.00 2.24
3246 8429 8.652810 ATTGTGCAAAAGGATTTAGAATATGC 57.347 30.769 0.00 0.00 37.28 3.14
3279 8462 5.295787 TGCAACCATTTCATACGTAGAATCC 59.704 40.000 0.08 0.00 0.00 3.01
3281 8464 6.038271 GCAACCATTTCATACGTAGAATCCTT 59.962 38.462 0.08 0.00 0.00 3.36
3574 8782 2.730382 TCGGCACTACCAAGATCTGTA 58.270 47.619 0.00 0.00 39.03 2.74
3652 8860 7.467675 CGTTGCAAGGAATTCATCATATCTTCA 60.468 37.037 13.85 0.00 0.00 3.02
3701 8909 0.798776 AGTTGAAAGGATCGCTTGCG 59.201 50.000 8.87 8.87 0.00 4.85
3710 8918 3.006940 AGGATCGCTTGCGTATTTCAAA 58.993 40.909 14.70 0.00 0.00 2.69
3731 8955 3.326747 AGTGTAAGCTCTTTAACTGCCG 58.673 45.455 0.00 0.00 0.00 5.69
3749 8973 4.523083 TGCCGATAGCCTGTAAGATTTTT 58.477 39.130 0.00 0.00 42.71 1.94
3899 9125 3.696051 GCCACCAATGATGTACTGACATT 59.304 43.478 0.00 1.07 46.64 2.71
3968 9228 5.003804 TGGAGAGCACCTTTTGTATTTCTC 58.996 41.667 0.00 0.00 0.00 2.87
3976 9236 9.077885 AGCACCTTTTGTATTTCTCATTTTAGA 57.922 29.630 0.00 0.00 0.00 2.10
4037 9313 2.950309 GCATGCAACATCTCTCTCCAAT 59.050 45.455 14.21 0.00 0.00 3.16
4055 9333 8.344446 TCTCCAATATATCCATGCATTTTCTG 57.656 34.615 0.00 0.00 0.00 3.02
4150 13207 8.640651 TCAAATTCCTGAAAACATGATCTTCAA 58.359 29.630 0.00 0.00 0.00 2.69
4351 13408 6.347644 CGTGAACTTGTTATTTCAGAGATGCA 60.348 38.462 0.00 0.00 32.40 3.96
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.463833 CGCCTCACCCCCTTAATCAC 60.464 60.000 0.00 0.00 0.00 3.06
3 4 1.212250 AACCGCCTCACCCCCTTAAT 61.212 55.000 0.00 0.00 0.00 1.40
5 6 1.848895 AAACCGCCTCACCCCCTTA 60.849 57.895 0.00 0.00 0.00 2.69
10 11 4.660938 AGCCAAACCGCCTCACCC 62.661 66.667 0.00 0.00 0.00 4.61
11 12 3.056328 GAGCCAAACCGCCTCACC 61.056 66.667 0.00 0.00 0.00 4.02
12 13 3.056328 GGAGCCAAACCGCCTCAC 61.056 66.667 0.00 0.00 0.00 3.51
14 15 2.747855 CAGGAGCCAAACCGCCTC 60.748 66.667 0.00 0.00 32.30 4.70
18 19 3.058160 CTGCCAGGAGCCAAACCG 61.058 66.667 0.00 0.00 42.71 4.44
19 20 3.376918 GCTGCCAGGAGCCAAACC 61.377 66.667 0.00 0.00 42.71 3.27
20 21 2.598394 TGCTGCCAGGAGCCAAAC 60.598 61.111 8.77 0.00 42.71 2.93
23 24 3.654143 ATGTGCTGCCAGGAGCCA 61.654 61.111 8.77 6.73 42.71 4.75
24 25 3.138798 CATGTGCTGCCAGGAGCC 61.139 66.667 8.77 1.11 42.71 4.70
25 26 3.823330 GCATGTGCTGCCAGGAGC 61.823 66.667 3.95 3.95 45.66 4.70
35 36 0.168128 GTTTACACGGGAGCATGTGC 59.832 55.000 0.00 0.00 39.71 4.57
36 37 1.518325 TGTTTACACGGGAGCATGTG 58.482 50.000 0.00 0.00 41.81 3.21
37 38 1.877443 GTTGTTTACACGGGAGCATGT 59.123 47.619 0.00 0.00 0.00 3.21
38 39 1.876799 TGTTGTTTACACGGGAGCATG 59.123 47.619 0.00 0.00 0.00 4.06
39 40 2.264005 TGTTGTTTACACGGGAGCAT 57.736 45.000 0.00 0.00 0.00 3.79
40 41 2.039818 TTGTTGTTTACACGGGAGCA 57.960 45.000 0.00 0.00 36.21 4.26
41 42 4.957759 ATATTGTTGTTTACACGGGAGC 57.042 40.909 0.00 0.00 36.21 4.70
42 43 9.680315 TTTAAAATATTGTTGTTTACACGGGAG 57.320 29.630 0.00 0.00 36.21 4.30
49 50 9.809928 CGCGCTATTTAAAATATTGTTGTTTAC 57.190 29.630 5.56 0.00 0.00 2.01
50 51 8.525071 GCGCGCTATTTAAAATATTGTTGTTTA 58.475 29.630 26.67 0.00 0.00 2.01
51 52 7.274686 AGCGCGCTATTTAAAATATTGTTGTTT 59.725 29.630 35.79 0.00 0.00 2.83
52 53 6.750039 AGCGCGCTATTTAAAATATTGTTGTT 59.250 30.769 35.79 0.00 0.00 2.83
53 54 6.262601 AGCGCGCTATTTAAAATATTGTTGT 58.737 32.000 35.79 0.00 0.00 3.32
54 55 6.732181 AGCGCGCTATTTAAAATATTGTTG 57.268 33.333 35.79 0.00 0.00 3.33
55 56 7.411274 TGTAGCGCGCTATTTAAAATATTGTT 58.589 30.769 39.99 13.28 0.00 2.83
56 57 6.950545 TGTAGCGCGCTATTTAAAATATTGT 58.049 32.000 39.99 13.68 0.00 2.71
57 58 7.830217 TTGTAGCGCGCTATTTAAAATATTG 57.170 32.000 39.99 0.00 0.00 1.90
58 59 8.844441 TTTTGTAGCGCGCTATTTAAAATATT 57.156 26.923 39.99 14.84 0.00 1.28
62 63 9.588774 CTATATTTTGTAGCGCGCTATTTAAAA 57.411 29.630 35.30 35.30 0.00 1.52
63 64 7.742963 GCTATATTTTGTAGCGCGCTATTTAAA 59.257 33.333 39.99 33.75 35.68 1.52
64 65 7.231607 GCTATATTTTGTAGCGCGCTATTTAA 58.768 34.615 39.99 30.67 35.68 1.52
65 66 6.758149 GCTATATTTTGTAGCGCGCTATTTA 58.242 36.000 39.99 26.76 35.68 1.40
66 67 5.618561 GCTATATTTTGTAGCGCGCTATTT 58.381 37.500 39.99 23.11 35.68 1.40
67 68 5.204673 GCTATATTTTGTAGCGCGCTATT 57.795 39.130 39.99 24.33 35.68 1.73
68 69 4.842139 GCTATATTTTGTAGCGCGCTAT 57.158 40.909 39.99 28.03 35.68 2.97
75 76 2.742589 GGGCCTCGCTATATTTTGTAGC 59.257 50.000 0.84 0.00 40.83 3.58
76 77 4.273148 AGGGCCTCGCTATATTTTGTAG 57.727 45.455 0.00 0.00 0.00 2.74
77 78 4.347000 AGAAGGGCCTCGCTATATTTTGTA 59.653 41.667 6.46 0.00 0.00 2.41
78 79 3.136626 AGAAGGGCCTCGCTATATTTTGT 59.863 43.478 6.46 0.00 0.00 2.83
79 80 3.744660 AGAAGGGCCTCGCTATATTTTG 58.255 45.455 6.46 0.00 0.00 2.44
80 81 3.648545 AGAGAAGGGCCTCGCTATATTTT 59.351 43.478 6.46 0.00 38.19 1.82
81 82 3.243724 AGAGAAGGGCCTCGCTATATTT 58.756 45.455 6.46 0.00 38.19 1.40
82 83 2.896039 AGAGAAGGGCCTCGCTATATT 58.104 47.619 6.46 0.00 38.19 1.28
83 84 2.614134 AGAGAAGGGCCTCGCTATAT 57.386 50.000 6.46 0.00 38.19 0.86
84 85 3.520691 TTAGAGAAGGGCCTCGCTATA 57.479 47.619 6.46 6.57 38.19 1.31
85 86 2.383442 TTAGAGAAGGGCCTCGCTAT 57.617 50.000 6.46 7.67 38.19 2.97
86 87 2.154567 TTTAGAGAAGGGCCTCGCTA 57.845 50.000 6.46 9.32 38.19 4.26
87 88 1.139853 CATTTAGAGAAGGGCCTCGCT 59.860 52.381 6.46 7.69 38.19 4.93
88 89 1.587547 CATTTAGAGAAGGGCCTCGC 58.412 55.000 6.46 1.59 38.19 5.03
89 90 1.139853 AGCATTTAGAGAAGGGCCTCG 59.860 52.381 6.46 0.00 38.19 4.63
90 91 3.134804 TGTAGCATTTAGAGAAGGGCCTC 59.865 47.826 6.46 0.00 0.00 4.70
91 92 3.115390 TGTAGCATTTAGAGAAGGGCCT 58.885 45.455 0.00 0.00 0.00 5.19
92 93 3.206964 GTGTAGCATTTAGAGAAGGGCC 58.793 50.000 0.00 0.00 0.00 5.80
93 94 3.873910 TGTGTAGCATTTAGAGAAGGGC 58.126 45.455 0.00 0.00 0.00 5.19
94 95 5.491982 ACTTGTGTAGCATTTAGAGAAGGG 58.508 41.667 0.00 0.00 0.00 3.95
95 96 8.723942 ATAACTTGTGTAGCATTTAGAGAAGG 57.276 34.615 0.00 0.00 0.00 3.46
97 98 9.314321 GCTATAACTTGTGTAGCATTTAGAGAA 57.686 33.333 11.18 0.00 44.25 2.87
98 99 7.648112 CGCTATAACTTGTGTAGCATTTAGAGA 59.352 37.037 14.40 0.00 44.89 3.10
99 100 7.567771 GCGCTATAACTTGTGTAGCATTTAGAG 60.568 40.741 0.00 0.00 44.89 2.43
100 101 6.200286 GCGCTATAACTTGTGTAGCATTTAGA 59.800 38.462 0.00 0.00 44.89 2.10
101 102 6.355638 GCGCTATAACTTGTGTAGCATTTAG 58.644 40.000 0.00 0.00 44.89 1.85
102 103 5.051307 CGCGCTATAACTTGTGTAGCATTTA 60.051 40.000 5.56 0.00 44.89 1.40
103 104 4.260212 CGCGCTATAACTTGTGTAGCATTT 60.260 41.667 5.56 0.00 44.89 2.32
104 105 3.245284 CGCGCTATAACTTGTGTAGCATT 59.755 43.478 5.56 0.00 44.89 3.56
105 106 2.794910 CGCGCTATAACTTGTGTAGCAT 59.205 45.455 5.56 0.00 44.89 3.79
106 107 2.190161 CGCGCTATAACTTGTGTAGCA 58.810 47.619 5.56 0.00 44.89 3.49
107 108 1.071436 GCGCGCTATAACTTGTGTAGC 60.071 52.381 26.67 7.79 42.08 3.58
108 109 2.460918 AGCGCGCTATAACTTGTGTAG 58.539 47.619 35.79 0.00 0.00 2.74
109 110 2.572191 AGCGCGCTATAACTTGTGTA 57.428 45.000 35.79 0.00 0.00 2.90
110 111 2.572191 TAGCGCGCTATAACTTGTGT 57.428 45.000 35.48 11.63 0.00 3.72
111 112 4.433022 GCTATTAGCGCGCTATAACTTGTG 60.433 45.833 38.51 22.32 0.00 3.33
112 113 3.673809 GCTATTAGCGCGCTATAACTTGT 59.326 43.478 38.51 20.48 0.00 3.16
113 114 4.232641 GCTATTAGCGCGCTATAACTTG 57.767 45.455 38.51 24.56 0.00 3.16
129 130 9.755064 CGCTATTTTAAAATATAGCACGCTATT 57.245 29.630 24.90 2.76 46.05 1.73
130 131 8.932791 ACGCTATTTTAAAATATAGCACGCTAT 58.067 29.630 24.90 15.45 46.05 2.97
131 132 8.301730 ACGCTATTTTAAAATATAGCACGCTA 57.698 30.769 24.90 0.39 46.05 4.26
132 133 7.186021 ACGCTATTTTAAAATATAGCACGCT 57.814 32.000 24.90 11.71 46.05 5.07
133 134 7.831750 AACGCTATTTTAAAATATAGCACGC 57.168 32.000 24.90 19.34 46.05 5.34
134 135 8.198816 GCAAACGCTATTTTAAAATATAGCACG 58.801 33.333 24.90 20.65 46.05 5.34
135 136 9.015577 TGCAAACGCTATTTTAAAATATAGCAC 57.984 29.630 24.90 14.22 46.05 4.40
136 137 9.574458 TTGCAAACGCTATTTTAAAATATAGCA 57.426 25.926 24.90 20.34 46.05 3.49
196 197 9.855021 GCTCCTATGAAAATTTTAGTTGCTTAA 57.145 29.630 2.75 0.00 0.00 1.85
197 198 9.019656 TGCTCCTATGAAAATTTTAGTTGCTTA 57.980 29.630 2.75 0.00 0.00 3.09
198 199 7.895759 TGCTCCTATGAAAATTTTAGTTGCTT 58.104 30.769 2.75 0.00 0.00 3.91
199 200 7.466746 TGCTCCTATGAAAATTTTAGTTGCT 57.533 32.000 2.75 0.00 0.00 3.91
200 201 7.201470 GCTTGCTCCTATGAAAATTTTAGTTGC 60.201 37.037 2.75 5.36 0.00 4.17
201 202 7.814107 TGCTTGCTCCTATGAAAATTTTAGTTG 59.186 33.333 2.75 0.00 0.00 3.16
202 203 7.895759 TGCTTGCTCCTATGAAAATTTTAGTT 58.104 30.769 2.75 0.00 0.00 2.24
203 204 7.466746 TGCTTGCTCCTATGAAAATTTTAGT 57.533 32.000 2.75 0.00 0.00 2.24
204 205 8.937634 ATTGCTTGCTCCTATGAAAATTTTAG 57.062 30.769 2.75 0.00 0.00 1.85
226 227 8.451748 CACTCCTTTCATCAGATGCATATATTG 58.548 37.037 5.41 0.00 0.00 1.90
227 228 8.380867 TCACTCCTTTCATCAGATGCATATATT 58.619 33.333 5.41 0.00 0.00 1.28
228 229 7.914859 TCACTCCTTTCATCAGATGCATATAT 58.085 34.615 5.41 0.00 0.00 0.86
229 230 7.234166 TCTCACTCCTTTCATCAGATGCATATA 59.766 37.037 5.41 0.00 0.00 0.86
230 231 6.042897 TCTCACTCCTTTCATCAGATGCATAT 59.957 38.462 5.41 0.00 0.00 1.78
231 232 5.364735 TCTCACTCCTTTCATCAGATGCATA 59.635 40.000 5.41 0.00 0.00 3.14
232 233 4.163649 TCTCACTCCTTTCATCAGATGCAT 59.836 41.667 0.00 0.00 0.00 3.96
233 234 3.516700 TCTCACTCCTTTCATCAGATGCA 59.483 43.478 5.41 0.00 0.00 3.96
234 235 4.134379 TCTCACTCCTTTCATCAGATGC 57.866 45.455 5.41 0.00 0.00 3.91
235 236 5.064962 GCTTTCTCACTCCTTTCATCAGATG 59.935 44.000 3.71 3.71 0.00 2.90
236 237 5.045724 AGCTTTCTCACTCCTTTCATCAGAT 60.046 40.000 0.00 0.00 0.00 2.90
237 238 4.285517 AGCTTTCTCACTCCTTTCATCAGA 59.714 41.667 0.00 0.00 0.00 3.27
238 239 4.577875 AGCTTTCTCACTCCTTTCATCAG 58.422 43.478 0.00 0.00 0.00 2.90
239 240 4.630644 AGCTTTCTCACTCCTTTCATCA 57.369 40.909 0.00 0.00 0.00 3.07
240 241 5.580297 CAGTAGCTTTCTCACTCCTTTCATC 59.420 44.000 0.00 0.00 0.00 2.92
241 242 5.486526 CAGTAGCTTTCTCACTCCTTTCAT 58.513 41.667 0.00 0.00 0.00 2.57
242 243 4.262635 CCAGTAGCTTTCTCACTCCTTTCA 60.263 45.833 0.00 0.00 0.00 2.69
243 244 4.249661 CCAGTAGCTTTCTCACTCCTTTC 58.750 47.826 0.00 0.00 0.00 2.62
244 245 3.008485 CCCAGTAGCTTTCTCACTCCTTT 59.992 47.826 0.00 0.00 0.00 3.11
245 246 2.569404 CCCAGTAGCTTTCTCACTCCTT 59.431 50.000 0.00 0.00 0.00 3.36
246 247 2.183679 CCCAGTAGCTTTCTCACTCCT 58.816 52.381 0.00 0.00 0.00 3.69
247 248 2.167487 CTCCCAGTAGCTTTCTCACTCC 59.833 54.545 0.00 0.00 0.00 3.85
248 249 3.093057 TCTCCCAGTAGCTTTCTCACTC 58.907 50.000 0.00 0.00 0.00 3.51
249 250 3.176924 TCTCCCAGTAGCTTTCTCACT 57.823 47.619 0.00 0.00 0.00 3.41
250 251 3.963428 TTCTCCCAGTAGCTTTCTCAC 57.037 47.619 0.00 0.00 0.00 3.51
251 252 4.161189 CAGATTCTCCCAGTAGCTTTCTCA 59.839 45.833 0.00 0.00 0.00 3.27
252 253 4.404073 TCAGATTCTCCCAGTAGCTTTCTC 59.596 45.833 0.00 0.00 0.00 2.87
253 254 4.357325 TCAGATTCTCCCAGTAGCTTTCT 58.643 43.478 0.00 0.00 0.00 2.52
254 255 4.744795 TCAGATTCTCCCAGTAGCTTTC 57.255 45.455 0.00 0.00 0.00 2.62
255 256 6.814954 TTATCAGATTCTCCCAGTAGCTTT 57.185 37.500 0.00 0.00 0.00 3.51
256 257 6.814954 TTTATCAGATTCTCCCAGTAGCTT 57.185 37.500 0.00 0.00 0.00 3.74
257 258 6.613271 TCTTTTATCAGATTCTCCCAGTAGCT 59.387 38.462 0.00 0.00 0.00 3.32
258 259 6.821388 TCTTTTATCAGATTCTCCCAGTAGC 58.179 40.000 0.00 0.00 0.00 3.58
259 260 8.482128 ACTTCTTTTATCAGATTCTCCCAGTAG 58.518 37.037 0.00 0.00 0.00 2.57
260 261 8.260818 CACTTCTTTTATCAGATTCTCCCAGTA 58.739 37.037 0.00 0.00 0.00 2.74
261 262 7.038017 TCACTTCTTTTATCAGATTCTCCCAGT 60.038 37.037 0.00 0.00 0.00 4.00
262 263 7.334090 TCACTTCTTTTATCAGATTCTCCCAG 58.666 38.462 0.00 0.00 0.00 4.45
263 264 7.180946 TCTCACTTCTTTTATCAGATTCTCCCA 59.819 37.037 0.00 0.00 0.00 4.37
264 265 7.560368 TCTCACTTCTTTTATCAGATTCTCCC 58.440 38.462 0.00 0.00 0.00 4.30
265 266 9.442047 TTTCTCACTTCTTTTATCAGATTCTCC 57.558 33.333 0.00 0.00 0.00 3.71
267 268 8.945057 GCTTTCTCACTTCTTTTATCAGATTCT 58.055 33.333 0.00 0.00 0.00 2.40
268 269 8.945057 AGCTTTCTCACTTCTTTTATCAGATTC 58.055 33.333 0.00 0.00 0.00 2.52
269 270 8.860780 AGCTTTCTCACTTCTTTTATCAGATT 57.139 30.769 0.00 0.00 0.00 2.40
270 271 9.598517 CTAGCTTTCTCACTTCTTTTATCAGAT 57.401 33.333 0.00 0.00 0.00 2.90
271 272 8.589338 ACTAGCTTTCTCACTTCTTTTATCAGA 58.411 33.333 0.00 0.00 0.00 3.27
272 273 8.655092 CACTAGCTTTCTCACTTCTTTTATCAG 58.345 37.037 0.00 0.00 0.00 2.90
273 274 7.604164 CCACTAGCTTTCTCACTTCTTTTATCA 59.396 37.037 0.00 0.00 0.00 2.15
274 275 7.604545 ACCACTAGCTTTCTCACTTCTTTTATC 59.395 37.037 0.00 0.00 0.00 1.75
275 276 7.454225 ACCACTAGCTTTCTCACTTCTTTTAT 58.546 34.615 0.00 0.00 0.00 1.40
276 277 6.827727 ACCACTAGCTTTCTCACTTCTTTTA 58.172 36.000 0.00 0.00 0.00 1.52
277 278 5.685728 ACCACTAGCTTTCTCACTTCTTTT 58.314 37.500 0.00 0.00 0.00 2.27
278 279 5.297569 ACCACTAGCTTTCTCACTTCTTT 57.702 39.130 0.00 0.00 0.00 2.52
279 280 4.559704 CGACCACTAGCTTTCTCACTTCTT 60.560 45.833 0.00 0.00 0.00 2.52
280 281 3.057174 CGACCACTAGCTTTCTCACTTCT 60.057 47.826 0.00 0.00 0.00 2.85
281 282 3.246619 CGACCACTAGCTTTCTCACTTC 58.753 50.000 0.00 0.00 0.00 3.01
282 283 2.628657 ACGACCACTAGCTTTCTCACTT 59.371 45.455 0.00 0.00 0.00 3.16
283 284 2.029828 CACGACCACTAGCTTTCTCACT 60.030 50.000 0.00 0.00 0.00 3.41
284 285 2.329379 CACGACCACTAGCTTTCTCAC 58.671 52.381 0.00 0.00 0.00 3.51
285 286 1.272490 CCACGACCACTAGCTTTCTCA 59.728 52.381 0.00 0.00 0.00 3.27
286 287 1.404315 CCCACGACCACTAGCTTTCTC 60.404 57.143 0.00 0.00 0.00 2.87
287 288 0.608640 CCCACGACCACTAGCTTTCT 59.391 55.000 0.00 0.00 0.00 2.52
288 289 0.320697 ACCCACGACCACTAGCTTTC 59.679 55.000 0.00 0.00 0.00 2.62
289 290 0.763035 AACCCACGACCACTAGCTTT 59.237 50.000 0.00 0.00 0.00 3.51
290 291 0.034896 CAACCCACGACCACTAGCTT 59.965 55.000 0.00 0.00 0.00 3.74
291 292 1.671742 CAACCCACGACCACTAGCT 59.328 57.895 0.00 0.00 0.00 3.32
292 293 1.375523 CCAACCCACGACCACTAGC 60.376 63.158 0.00 0.00 0.00 3.42
293 294 0.395312 AACCAACCCACGACCACTAG 59.605 55.000 0.00 0.00 0.00 2.57
294 295 0.838608 AAACCAACCCACGACCACTA 59.161 50.000 0.00 0.00 0.00 2.74
295 296 0.033894 AAAACCAACCCACGACCACT 60.034 50.000 0.00 0.00 0.00 4.00
296 297 0.101579 CAAAACCAACCCACGACCAC 59.898 55.000 0.00 0.00 0.00 4.16
297 298 1.038130 CCAAAACCAACCCACGACCA 61.038 55.000 0.00 0.00 0.00 4.02
298 299 1.737201 CCAAAACCAACCCACGACC 59.263 57.895 0.00 0.00 0.00 4.79
299 300 1.066752 GCCAAAACCAACCCACGAC 59.933 57.895 0.00 0.00 0.00 4.34
300 301 2.128507 GGCCAAAACCAACCCACGA 61.129 57.895 0.00 0.00 0.00 4.35
301 302 2.131067 AGGCCAAAACCAACCCACG 61.131 57.895 5.01 0.00 0.00 4.94
302 303 1.445518 CAGGCCAAAACCAACCCAC 59.554 57.895 5.01 0.00 0.00 4.61
303 304 2.439104 GCAGGCCAAAACCAACCCA 61.439 57.895 5.01 0.00 0.00 4.51
304 305 2.140138 AGCAGGCCAAAACCAACCC 61.140 57.895 5.01 0.00 0.00 4.11
305 306 1.069596 CAGCAGGCCAAAACCAACC 59.930 57.895 5.01 0.00 0.00 3.77
306 307 1.069596 CCAGCAGGCCAAAACCAAC 59.930 57.895 5.01 0.00 0.00 3.77
307 308 2.139484 CCCAGCAGGCCAAAACCAA 61.139 57.895 5.01 0.00 0.00 3.67
308 309 2.523902 CCCAGCAGGCCAAAACCA 60.524 61.111 5.01 0.00 0.00 3.67
317 318 0.682209 AATAAGCACAGCCCAGCAGG 60.682 55.000 0.00 0.00 39.47 4.85
318 319 1.133790 GAAATAAGCACAGCCCAGCAG 59.866 52.381 0.00 0.00 0.00 4.24
319 320 1.176527 GAAATAAGCACAGCCCAGCA 58.823 50.000 0.00 0.00 0.00 4.41
320 321 1.133790 CTGAAATAAGCACAGCCCAGC 59.866 52.381 0.00 0.00 0.00 4.85
321 322 2.440409 ACTGAAATAAGCACAGCCCAG 58.560 47.619 0.00 0.00 35.38 4.45
322 323 2.584835 ACTGAAATAAGCACAGCCCA 57.415 45.000 0.00 0.00 35.38 5.36
323 324 3.942130 AAACTGAAATAAGCACAGCCC 57.058 42.857 0.00 0.00 35.38 5.19
324 325 3.429881 GCAAAACTGAAATAAGCACAGCC 59.570 43.478 0.00 0.00 35.38 4.85
325 326 4.050553 TGCAAAACTGAAATAAGCACAGC 58.949 39.130 0.00 0.00 35.38 4.40
326 327 5.119588 CCATGCAAAACTGAAATAAGCACAG 59.880 40.000 0.00 0.00 37.62 3.66
327 328 4.989797 CCATGCAAAACTGAAATAAGCACA 59.010 37.500 0.00 0.00 32.92 4.57
328 329 4.143052 GCCATGCAAAACTGAAATAAGCAC 60.143 41.667 0.00 0.00 32.92 4.40
329 330 3.995705 GCCATGCAAAACTGAAATAAGCA 59.004 39.130 0.00 0.00 34.78 3.91
330 331 3.371898 GGCCATGCAAAACTGAAATAAGC 59.628 43.478 0.00 0.00 0.00 3.09
331 332 4.628333 CAGGCCATGCAAAACTGAAATAAG 59.372 41.667 5.01 0.00 0.00 1.73
332 333 4.567971 CAGGCCATGCAAAACTGAAATAA 58.432 39.130 5.01 0.00 0.00 1.40
333 334 4.191033 CAGGCCATGCAAAACTGAAATA 57.809 40.909 5.01 0.00 0.00 1.40
334 335 3.048337 CAGGCCATGCAAAACTGAAAT 57.952 42.857 5.01 0.00 0.00 2.17
335 336 2.529780 CAGGCCATGCAAAACTGAAA 57.470 45.000 5.01 0.00 0.00 2.69
346 347 0.109781 GTTACAACGTGCAGGCCATG 60.110 55.000 5.01 6.13 36.50 3.66
347 348 1.573829 CGTTACAACGTGCAGGCCAT 61.574 55.000 5.01 0.00 46.63 4.40
348 349 2.248135 CGTTACAACGTGCAGGCCA 61.248 57.895 5.01 0.00 46.63 5.36
349 350 2.554272 CGTTACAACGTGCAGGCC 59.446 61.111 6.26 0.00 46.63 5.19
374 375 4.891277 ACACACGCTATAACGTTGTAAC 57.109 40.909 11.99 3.02 45.75 2.50
375 376 4.558470 GCTACACACGCTATAACGTTGTAA 59.442 41.667 11.99 0.00 45.75 2.41
376 377 4.097714 GCTACACACGCTATAACGTTGTA 58.902 43.478 11.99 7.93 45.75 2.41
377 378 2.919229 GCTACACACGCTATAACGTTGT 59.081 45.455 11.99 6.97 45.75 3.32
378 379 2.036004 CGCTACACACGCTATAACGTTG 60.036 50.000 11.99 4.29 45.75 4.10
379 380 2.179589 CGCTACACACGCTATAACGTT 58.820 47.619 5.88 5.88 45.75 3.99
389 390 1.072348 GTAATTAGCGCGCTACACACG 60.072 52.381 38.48 0.00 0.00 4.49
390 391 1.072348 CGTAATTAGCGCGCTACACAC 60.072 52.381 38.48 30.12 0.00 3.82
391 392 1.193644 CGTAATTAGCGCGCTACACA 58.806 50.000 38.48 25.57 0.00 3.72
392 393 1.072348 CACGTAATTAGCGCGCTACAC 60.072 52.381 38.48 30.75 0.00 2.90
393 394 1.193644 CACGTAATTAGCGCGCTACA 58.806 50.000 38.48 27.91 0.00 2.74
394 395 1.469917 TCACGTAATTAGCGCGCTAC 58.530 50.000 38.48 28.33 0.00 3.58
395 396 2.410785 ATCACGTAATTAGCGCGCTA 57.589 45.000 35.48 35.48 0.00 4.26
396 397 1.567504 AATCACGTAATTAGCGCGCT 58.432 45.000 38.01 38.01 0.00 5.92
397 398 3.073022 CTAATCACGTAATTAGCGCGC 57.927 47.619 26.66 26.66 33.68 6.86
402 403 3.047796 ACGGCGCTAATCACGTAATTAG 58.952 45.455 13.31 13.31 40.63 1.73
403 404 3.082698 ACGGCGCTAATCACGTAATTA 57.917 42.857 6.90 0.00 37.85 1.40
404 405 1.930567 ACGGCGCTAATCACGTAATT 58.069 45.000 6.90 0.00 37.85 1.40
405 406 2.658285 CTACGGCGCTAATCACGTAAT 58.342 47.619 6.90 0.00 40.69 1.89
406 407 1.861202 GCTACGGCGCTAATCACGTAA 60.861 52.381 6.90 0.00 40.69 3.18
407 408 0.317269 GCTACGGCGCTAATCACGTA 60.317 55.000 6.90 10.75 40.38 3.57
408 409 1.588139 GCTACGGCGCTAATCACGT 60.588 57.895 6.90 10.07 42.71 4.49
409 410 3.221956 GCTACGGCGCTAATCACG 58.778 61.111 6.90 3.16 0.00 4.35
419 420 1.060698 GACAAAATCAGACGCTACGGC 59.939 52.381 0.00 0.00 33.59 5.68
420 421 2.333926 TGACAAAATCAGACGCTACGG 58.666 47.619 0.00 0.00 31.91 4.02
421 422 4.383774 TTTGACAAAATCAGACGCTACG 57.616 40.909 0.00 0.00 38.99 3.51
422 423 4.607235 CGTTTTGACAAAATCAGACGCTAC 59.393 41.667 16.03 0.02 39.91 3.58
423 424 4.271533 ACGTTTTGACAAAATCAGACGCTA 59.728 37.500 16.03 0.00 45.33 4.26
424 425 3.064820 ACGTTTTGACAAAATCAGACGCT 59.935 39.130 16.03 4.57 45.33 5.07
425 426 3.359654 ACGTTTTGACAAAATCAGACGC 58.640 40.909 16.03 1.52 45.33 5.19
426 427 5.111465 CGTTACGTTTTGACAAAATCAGACG 59.889 40.000 16.03 16.32 46.13 4.18
427 428 5.961263 ACGTTACGTTTTGACAAAATCAGAC 59.039 36.000 16.03 11.62 36.35 3.51
428 429 6.036300 AGACGTTACGTTTTGACAAAATCAGA 59.964 34.615 12.82 1.95 41.37 3.27
429 430 6.189567 AGACGTTACGTTTTGACAAAATCAG 58.810 36.000 12.82 12.65 41.37 2.90
430 431 6.109320 AGACGTTACGTTTTGACAAAATCA 57.891 33.333 12.82 2.75 41.37 2.57
431 432 5.618395 GGAGACGTTACGTTTTGACAAAATC 59.382 40.000 12.82 8.07 41.37 2.17
432 433 5.504392 GGAGACGTTACGTTTTGACAAAAT 58.496 37.500 12.82 4.51 41.37 1.82
433 434 4.201802 GGGAGACGTTACGTTTTGACAAAA 60.202 41.667 12.82 9.30 41.37 2.44
434 435 3.309410 GGGAGACGTTACGTTTTGACAAA 59.691 43.478 12.82 0.00 41.37 2.83
435 436 2.865551 GGGAGACGTTACGTTTTGACAA 59.134 45.455 12.82 0.00 41.37 3.18
436 437 2.101249 AGGGAGACGTTACGTTTTGACA 59.899 45.455 12.82 0.00 41.37 3.58
437 438 2.747436 AGGGAGACGTTACGTTTTGAC 58.253 47.619 12.82 0.00 41.37 3.18
438 439 3.383761 GAAGGGAGACGTTACGTTTTGA 58.616 45.455 12.82 0.00 41.37 2.69
439 440 2.477754 GGAAGGGAGACGTTACGTTTTG 59.522 50.000 12.82 0.00 41.37 2.44
440 441 2.102925 TGGAAGGGAGACGTTACGTTTT 59.897 45.455 12.82 3.52 42.05 2.43
441 442 1.688197 TGGAAGGGAGACGTTACGTTT 59.312 47.619 12.82 6.17 42.05 3.60
442 443 1.331214 TGGAAGGGAGACGTTACGTT 58.669 50.000 12.82 1.89 42.05 3.99
443 444 1.331214 TTGGAAGGGAGACGTTACGT 58.669 50.000 11.12 11.12 42.05 3.57
444 445 2.443887 TTTGGAAGGGAGACGTTACG 57.556 50.000 2.19 2.19 42.05 3.18
445 446 4.272748 GCATATTTGGAAGGGAGACGTTAC 59.727 45.833 0.00 0.00 38.82 2.50
446 447 4.163458 AGCATATTTGGAAGGGAGACGTTA 59.837 41.667 0.00 0.00 38.82 3.18
447 448 3.054361 AGCATATTTGGAAGGGAGACGTT 60.054 43.478 0.00 0.00 42.01 3.99
448 449 2.505819 AGCATATTTGGAAGGGAGACGT 59.494 45.455 0.00 0.00 0.00 4.34
449 450 3.199880 AGCATATTTGGAAGGGAGACG 57.800 47.619 0.00 0.00 0.00 4.18
450 451 6.655425 GGTTATAGCATATTTGGAAGGGAGAC 59.345 42.308 0.00 0.00 0.00 3.36
451 452 6.520061 CGGTTATAGCATATTTGGAAGGGAGA 60.520 42.308 0.00 0.00 0.00 3.71
452 453 5.643777 CGGTTATAGCATATTTGGAAGGGAG 59.356 44.000 0.00 0.00 0.00 4.30
453 454 5.556915 CGGTTATAGCATATTTGGAAGGGA 58.443 41.667 0.00 0.00 0.00 4.20
454 455 4.156008 GCGGTTATAGCATATTTGGAAGGG 59.844 45.833 0.00 0.00 34.19 3.95
455 456 4.142902 CGCGGTTATAGCATATTTGGAAGG 60.143 45.833 0.00 0.00 34.19 3.46
456 457 4.451096 ACGCGGTTATAGCATATTTGGAAG 59.549 41.667 12.47 0.00 34.19 3.46
457 458 4.382291 ACGCGGTTATAGCATATTTGGAA 58.618 39.130 12.47 0.00 34.19 3.53
458 459 3.997762 ACGCGGTTATAGCATATTTGGA 58.002 40.909 12.47 0.00 34.19 3.53
459 460 4.742438 AACGCGGTTATAGCATATTTGG 57.258 40.909 12.47 0.00 34.19 3.28
460 461 9.420966 CATTATAACGCGGTTATAGCATATTTG 57.579 33.333 12.47 0.00 40.54 2.32
461 462 8.609176 CCATTATAACGCGGTTATAGCATATTT 58.391 33.333 12.47 0.00 40.54 1.40
462 463 7.254658 GCCATTATAACGCGGTTATAGCATATT 60.255 37.037 12.47 0.00 40.54 1.28
463 464 6.202188 GCCATTATAACGCGGTTATAGCATAT 59.798 38.462 12.47 4.71 40.54 1.78
464 465 5.521010 GCCATTATAACGCGGTTATAGCATA 59.479 40.000 12.47 0.00 40.54 3.14
465 466 4.331717 GCCATTATAACGCGGTTATAGCAT 59.668 41.667 12.47 5.64 40.54 3.79
466 467 3.680937 GCCATTATAACGCGGTTATAGCA 59.319 43.478 12.47 3.63 40.54 3.49
467 468 3.241868 CGCCATTATAACGCGGTTATAGC 60.242 47.826 12.47 13.70 40.54 2.97
468 469 4.168014 TCGCCATTATAACGCGGTTATAG 58.832 43.478 21.91 6.48 45.74 1.31
469 470 4.171663 TCGCCATTATAACGCGGTTATA 57.828 40.909 21.91 13.18 45.74 0.98
470 471 3.029320 TCGCCATTATAACGCGGTTAT 57.971 42.857 21.91 14.16 45.74 1.89
471 472 2.505628 TCGCCATTATAACGCGGTTA 57.494 45.000 21.91 7.35 45.74 2.85
472 473 1.654317 TTCGCCATTATAACGCGGTT 58.346 45.000 21.91 5.03 45.74 4.44
473 474 1.654317 TTTCGCCATTATAACGCGGT 58.346 45.000 21.91 6.42 45.74 5.68
474 475 2.961522 ATTTCGCCATTATAACGCGG 57.038 45.000 21.91 9.98 45.74 6.46
476 477 3.120786 ACGCTATTTCGCCATTATAACGC 60.121 43.478 0.00 0.00 0.00 4.84
477 478 4.382831 CACGCTATTTCGCCATTATAACG 58.617 43.478 0.00 0.00 0.00 3.18
478 479 4.084013 AGCACGCTATTTCGCCATTATAAC 60.084 41.667 0.00 0.00 0.00 1.89
479 480 4.062293 AGCACGCTATTTCGCCATTATAA 58.938 39.130 0.00 0.00 0.00 0.98
480 481 3.659786 AGCACGCTATTTCGCCATTATA 58.340 40.909 0.00 0.00 0.00 0.98
481 482 2.494059 AGCACGCTATTTCGCCATTAT 58.506 42.857 0.00 0.00 0.00 1.28
482 483 1.948104 AGCACGCTATTTCGCCATTA 58.052 45.000 0.00 0.00 0.00 1.90
483 484 1.948104 TAGCACGCTATTTCGCCATT 58.052 45.000 0.00 0.00 0.00 3.16
484 485 2.169832 ATAGCACGCTATTTCGCCAT 57.830 45.000 5.72 0.00 35.92 4.40
485 486 1.948104 AATAGCACGCTATTTCGCCA 58.052 45.000 16.70 0.00 44.18 5.69
494 495 9.511144 GTTTACCAATATTTTAAATAGCACGCT 57.489 29.630 3.73 0.00 0.00 5.07
495 496 9.291664 TGTTTACCAATATTTTAAATAGCACGC 57.708 29.630 3.73 0.00 0.00 5.34
554 555 9.487790 ACGAACATCCACAAAATATTTCATTTT 57.512 25.926 0.10 0.00 0.00 1.82
555 556 8.924691 CACGAACATCCACAAAATATTTCATTT 58.075 29.630 0.10 0.00 0.00 2.32
556 557 8.087750 ACACGAACATCCACAAAATATTTCATT 58.912 29.630 0.10 0.00 0.00 2.57
557 558 7.601856 ACACGAACATCCACAAAATATTTCAT 58.398 30.769 0.10 0.00 0.00 2.57
567 568 3.799366 ACACTAACACGAACATCCACAA 58.201 40.909 0.00 0.00 0.00 3.33
568 569 3.462483 ACACTAACACGAACATCCACA 57.538 42.857 0.00 0.00 0.00 4.17
571 572 2.806244 AGCAACACTAACACGAACATCC 59.194 45.455 0.00 0.00 0.00 3.51
592 593 5.104374 GCATGAAAATTGCTAAGCTTGCTA 58.896 37.500 9.86 8.24 37.14 3.49
597 598 4.439305 TTCGCATGAAAATTGCTAAGCT 57.561 36.364 0.00 0.00 37.96 3.74
602 603 2.030363 TCCGTTTCGCATGAAAATTGCT 60.030 40.909 0.00 0.00 45.22 3.91
603 604 2.323959 TCCGTTTCGCATGAAAATTGC 58.676 42.857 0.00 0.00 45.22 3.56
621 622 3.270877 ACCGATGAAACAATGCTACTCC 58.729 45.455 0.00 0.00 0.00 3.85
625 626 7.041030 TGTCTTTTTACCGATGAAACAATGCTA 60.041 33.333 0.00 0.00 0.00 3.49
630 631 8.934507 AATTTGTCTTTTTACCGATGAAACAA 57.065 26.923 0.00 0.00 0.00 2.83
632 633 8.272866 CCAAATTTGTCTTTTTACCGATGAAAC 58.727 33.333 16.73 0.00 0.00 2.78
637 638 5.305902 ACCCCAAATTTGTCTTTTTACCGAT 59.694 36.000 16.73 0.00 0.00 4.18
640 641 7.273712 TGTTACCCCAAATTTGTCTTTTTACC 58.726 34.615 16.73 0.00 0.00 2.85
675 676 7.916450 ACATTTTGGCATGTGAAAAGAAAATTG 59.084 29.630 9.10 5.22 35.97 2.32
701 702 8.744568 ATGAATTTTTAGGCAAAAAGGTCAAA 57.255 26.923 17.42 1.41 44.57 2.69
732 733 8.000991 CACGCGAAAATTATTTTTGAAATGTCA 58.999 29.630 15.93 0.00 36.35 3.58
733 734 8.001549 ACACGCGAAAATTATTTTTGAAATGTC 58.998 29.630 15.93 2.41 36.35 3.06
775 776 3.181493 CCAGAAATCCAATTTGGCTCTCG 60.181 47.826 10.76 2.20 37.47 4.04
777 778 4.051661 TCCAGAAATCCAATTTGGCTCT 57.948 40.909 10.76 9.15 37.47 4.09
795 796 5.079689 TCGTTGTAGTATGCTCAAATCCA 57.920 39.130 0.00 0.00 0.00 3.41
825 826 9.109393 TCACCTTCAACTCAGCAATAATATTAC 57.891 33.333 0.00 0.00 0.00 1.89
854 855 5.642491 ACTAATTTACAACCCGCTTCTCTTC 59.358 40.000 0.00 0.00 0.00 2.87
952 963 3.512724 AGAGTAGTTAGCTACCCGCAAAA 59.487 43.478 12.62 0.00 46.60 2.44
953 964 3.094572 AGAGTAGTTAGCTACCCGCAAA 58.905 45.455 12.62 0.00 46.60 3.68
954 965 2.686915 GAGAGTAGTTAGCTACCCGCAA 59.313 50.000 12.62 0.00 46.60 4.85
955 966 2.092538 AGAGAGTAGTTAGCTACCCGCA 60.093 50.000 12.62 0.00 46.60 5.69
956 967 2.549329 GAGAGAGTAGTTAGCTACCCGC 59.451 54.545 12.62 3.69 46.60 6.13
957 968 4.060205 GAGAGAGAGTAGTTAGCTACCCG 58.940 52.174 12.62 0.00 46.60 5.28
958 969 5.071384 AGAGAGAGAGAGTAGTTAGCTACCC 59.929 48.000 12.62 1.64 46.60 3.69
960 971 7.014422 AGAGAGAGAGAGAGAGTAGTTAGCTAC 59.986 44.444 8.59 8.59 45.96 3.58
961 972 7.014326 CAGAGAGAGAGAGAGAGTAGTTAGCTA 59.986 44.444 0.00 0.00 0.00 3.32
962 973 5.900123 AGAGAGAGAGAGAGAGTAGTTAGCT 59.100 44.000 0.00 0.00 0.00 3.32
963 974 5.986135 CAGAGAGAGAGAGAGAGTAGTTAGC 59.014 48.000 0.00 0.00 0.00 3.09
966 977 6.374417 AACAGAGAGAGAGAGAGAGTAGTT 57.626 41.667 0.00 0.00 0.00 2.24
968 979 6.644347 AGAAACAGAGAGAGAGAGAGAGTAG 58.356 44.000 0.00 0.00 0.00 2.57
969 980 6.620877 AGAAACAGAGAGAGAGAGAGAGTA 57.379 41.667 0.00 0.00 0.00 2.59
970 981 5.505181 AGAAACAGAGAGAGAGAGAGAGT 57.495 43.478 0.00 0.00 0.00 3.24
972 983 7.390440 CACTAAAGAAACAGAGAGAGAGAGAGA 59.610 40.741 0.00 0.00 0.00 3.10
973 984 7.530010 CACTAAAGAAACAGAGAGAGAGAGAG 58.470 42.308 0.00 0.00 0.00 3.20
974 985 6.072175 GCACTAAAGAAACAGAGAGAGAGAGA 60.072 42.308 0.00 0.00 0.00 3.10
978 989 4.278669 ACGCACTAAAGAAACAGAGAGAGA 59.721 41.667 0.00 0.00 0.00 3.10
982 2106 8.821147 TTTTATACGCACTAAAGAAACAGAGA 57.179 30.769 0.00 0.00 0.00 3.10
1014 2141 8.217131 GTCAAAGTTTAGGAAGGTTGACTTTA 57.783 34.615 7.01 0.00 40.91 1.85
1023 2150 8.166422 ACAAATGTAGTCAAAGTTTAGGAAGG 57.834 34.615 0.00 0.00 0.00 3.46
1088 3965 7.482743 CACATGTTTAACAGTGCATCTAATGAC 59.517 37.037 3.63 0.00 0.00 3.06
1202 4471 5.667626 ACTCCATGGATTCCTAATGTAGTGT 59.332 40.000 16.63 0.92 0.00 3.55
1278 4547 2.885266 CCTCTGCTGGCTATACGTCTAA 59.115 50.000 0.00 0.00 0.00 2.10
1307 4576 3.253220 TGGAAAGGAGGCTGTAGGTTTA 58.747 45.455 0.00 0.00 0.00 2.01
1344 4613 9.892130 GTTAGCCAGCTATTAATAAGGTGATAT 57.108 33.333 17.97 10.31 43.52 1.63
1458 6570 0.468585 TGGTACGGTGCTATCGGGAT 60.469 55.000 0.00 0.00 0.00 3.85
1459 6571 1.076850 TGGTACGGTGCTATCGGGA 60.077 57.895 0.00 0.00 0.00 5.14
1460 6572 1.066918 GTGGTACGGTGCTATCGGG 59.933 63.158 0.00 0.00 0.00 5.14
1462 6574 1.066918 GGGTGGTACGGTGCTATCG 59.933 63.158 0.00 0.00 0.00 2.92
1463 6575 0.179092 GTGGGTGGTACGGTGCTATC 60.179 60.000 0.00 0.00 0.00 2.08
1464 6576 1.902556 GTGGGTGGTACGGTGCTAT 59.097 57.895 0.00 0.00 0.00 2.97
1465 6577 2.638354 CGTGGGTGGTACGGTGCTA 61.638 63.158 0.00 0.00 37.86 3.49
1466 6578 3.998672 CGTGGGTGGTACGGTGCT 61.999 66.667 0.00 0.00 37.86 4.40
1467 6579 3.518419 TTCGTGGGTGGTACGGTGC 62.518 63.158 0.00 0.00 41.58 5.01
1468 6580 1.665599 GTTCGTGGGTGGTACGGTG 60.666 63.158 0.00 0.00 41.58 4.94
1469 6581 2.736531 GTTCGTGGGTGGTACGGT 59.263 61.111 0.00 0.00 41.58 4.83
1470 6582 2.216750 ATCGTTCGTGGGTGGTACGG 62.217 60.000 0.00 0.00 41.58 4.02
1471 6583 1.074319 CATCGTTCGTGGGTGGTACG 61.074 60.000 0.00 0.00 42.56 3.67
1472 6584 0.738412 CCATCGTTCGTGGGTGGTAC 60.738 60.000 6.13 0.00 32.98 3.34
1473 6585 0.899253 TCCATCGTTCGTGGGTGGTA 60.899 55.000 11.50 0.00 37.34 3.25
1495 6607 1.153706 GCGGCGGACAAGCTTACTA 60.154 57.895 9.78 0.00 37.29 1.82
1607 6719 2.361992 TAGGCGTCGCTCCAGGAA 60.362 61.111 18.11 0.00 0.00 3.36
1909 7051 1.731709 CATGCTTTCCGTCATTGTCGA 59.268 47.619 4.86 0.00 0.00 4.20
1914 7056 2.489329 CCAAGACATGCTTTCCGTCATT 59.511 45.455 0.00 0.00 33.60 2.57
1922 7064 1.347707 TCGAGGTCCAAGACATGCTTT 59.652 47.619 0.00 0.00 33.60 3.51
1980 7124 2.179517 CGACTCTCGTGCCCAGAC 59.820 66.667 0.00 0.00 34.72 3.51
2309 7483 1.053835 TCCACACCTGCAGGAGTTGA 61.054 55.000 39.19 31.95 36.88 3.18
2403 7577 5.531659 TCTTGTTTGCCAAATCAATGCAATT 59.468 32.000 0.00 0.00 43.78 2.32
2534 7708 3.821841 CCTATTTGCGTCAACCTTGAAC 58.178 45.455 0.00 0.00 39.21 3.18
2572 7746 2.100197 TGTACTCTCCAATGTCCCGAG 58.900 52.381 0.00 0.00 0.00 4.63
2624 7798 3.128349 TGTTGTGTCCTTAGTCGAAAGC 58.872 45.455 0.00 0.00 0.00 3.51
2671 7845 2.031516 GGAGAGTCGACGTCGTCCA 61.032 63.158 34.40 15.71 40.80 4.02
2828 8004 3.634702 TAAGCATGCCGTCGACGCA 62.635 57.895 31.73 29.55 38.18 5.24
2840 8016 1.502231 CAATAGGCGACGCTAAGCAT 58.498 50.000 20.77 3.29 34.54 3.79
2893 8069 4.477975 GCCGTCCACTCCTCGTCG 62.478 72.222 0.00 0.00 0.00 5.12
2938 8117 1.713830 GTGAGTTTACGCCGGCATC 59.286 57.895 28.98 13.85 0.00 3.91
2949 8128 1.068741 GTGGACCAGACTCGTGAGTTT 59.931 52.381 3.69 0.00 42.66 2.66
2950 8129 0.674534 GTGGACCAGACTCGTGAGTT 59.325 55.000 3.69 0.00 42.66 3.01
2956 8135 0.818296 CCTTAGGTGGACCAGACTCG 59.182 60.000 0.00 0.00 38.89 4.18
2960 8139 1.615424 GGCCCTTAGGTGGACCAGA 60.615 63.158 0.00 0.00 38.89 3.86
2961 8140 2.998949 GGCCCTTAGGTGGACCAG 59.001 66.667 0.00 0.00 38.89 4.00
2962 8141 3.006728 CGGCCCTTAGGTGGACCA 61.007 66.667 0.00 0.00 38.89 4.02
2967 8146 3.861797 ATCGGCGGCCCTTAGGTG 61.862 66.667 14.55 0.00 34.57 4.00
2968 8147 3.861797 CATCGGCGGCCCTTAGGT 61.862 66.667 14.55 0.00 34.57 3.08
2969 8148 4.626081 CCATCGGCGGCCCTTAGG 62.626 72.222 14.55 6.74 0.00 2.69
3141 8323 6.072342 GGTAATATGGACCTTTGACAAAACGT 60.072 38.462 1.62 1.28 33.86 3.99
3158 8340 7.978975 CCCAAAACACACATAAAGGGTAATATG 59.021 37.037 0.00 0.00 35.97 1.78
3189 8372 5.683681 AGTGTGATCAAAAAGCCCAATTTT 58.316 33.333 0.00 0.00 33.86 1.82
3192 8375 4.961438 AAGTGTGATCAAAAAGCCCAAT 57.039 36.364 0.00 0.00 0.00 3.16
3194 8377 6.374333 GTCTATAAGTGTGATCAAAAAGCCCA 59.626 38.462 0.00 0.00 0.00 5.36
3204 8387 8.648557 TTGCACAATAGTCTATAAGTGTGATC 57.351 34.615 20.29 9.19 38.90 2.92
3214 8397 9.905713 TCTAAATCCTTTTGCACAATAGTCTAT 57.094 29.630 0.00 0.00 0.00 1.98
3246 8429 2.228582 TGAAATGGTTGCAACTGGATCG 59.771 45.455 27.64 0.00 0.00 3.69
3437 8644 9.180678 GTGTATTTCTCAATCGTTGTTTTGATT 57.819 29.630 0.00 0.00 35.26 2.57
3574 8782 4.617530 GCAATTGAATGACTGCATCTGTGT 60.618 41.667 10.34 0.00 34.87 3.72
3616 8824 2.422597 TCCTTGCAACGTGAAGGTATG 58.577 47.619 16.73 0.00 39.91 2.39
3710 8918 3.006537 TCGGCAGTTAAAGAGCTTACACT 59.993 43.478 0.00 0.00 0.00 3.55
3810 9036 5.704515 GGTCAATACTTGCAGATGCTCATAT 59.295 40.000 6.35 0.00 42.66 1.78
3899 9125 8.839343 CATGCATATGGTCTCATAACTTTACAA 58.161 33.333 0.00 0.00 39.10 2.41
3976 9236 9.939802 AAAAAGGTACTAGACTATTCGATTTGT 57.060 29.630 0.00 0.00 38.49 2.83
3990 9257 6.356186 ACCACCTCTGTAAAAAGGTACTAG 57.644 41.667 0.00 0.00 44.13 2.57
4137 11540 6.713762 TGGTCTTGTTTTGAAGATCATGTT 57.286 33.333 0.00 0.00 38.02 2.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.