Multiple sequence alignment - TraesCS2B01G443500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G443500 chr2B 100.000 4651 0 0 1 4651 636484011 636479361 0.000000e+00 8589.0
1 TraesCS2B01G443500 chr2D 89.027 3609 178 69 1 3514 535110638 535107153 0.000000e+00 4270.0
2 TraesCS2B01G443500 chr2D 93.795 419 16 4 4239 4651 535106330 535105916 5.110000e-174 621.0
3 TraesCS2B01G443500 chr2D 80.879 387 51 17 3772 4137 535106937 535106553 2.740000e-72 283.0
4 TraesCS2B01G443500 chr2D 88.235 68 7 1 3611 3677 15520445 15520512 3.860000e-11 80.5
5 TraesCS2B01G443500 chr2D 97.297 37 1 0 4191 4227 535106396 535106360 3.890000e-06 63.9
6 TraesCS2B01G443500 chr2A 92.998 1671 74 23 1861 3514 678372426 678370782 0.000000e+00 2398.0
7 TraesCS2B01G443500 chr2A 82.787 854 66 37 829 1642 678373494 678372682 0.000000e+00 688.0
8 TraesCS2B01G443500 chr2A 91.545 343 20 5 4315 4650 678370128 678369788 9.120000e-127 464.0
9 TraesCS2B01G443500 chr2A 80.818 391 43 15 256 633 678373915 678373544 1.270000e-70 278.0
10 TraesCS2B01G443500 chr2A 93.548 93 6 0 1772 1864 678372558 678372466 6.280000e-29 139.0
11 TraesCS2B01G443500 chr2A 79.042 167 21 8 3780 3935 678370390 678370227 8.230000e-18 102.0
12 TraesCS2B01G443500 chr1B 95.035 141 5 2 4512 4651 218343533 218343394 2.180000e-53 220.0
13 TraesCS2B01G443500 chr1B 88.235 68 7 1 3611 3677 458013857 458013924 3.860000e-11 80.5
14 TraesCS2B01G443500 chr7D 86.765 68 8 1 3611 3677 115138423 115138490 1.790000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G443500 chr2B 636479361 636484011 4650 True 8589.000000 8589 100.000000 1 4651 1 chr2B.!!$R1 4650
1 TraesCS2B01G443500 chr2D 535105916 535110638 4722 True 1309.475000 4270 90.249500 1 4651 4 chr2D.!!$R1 4650
2 TraesCS2B01G443500 chr2A 678369788 678373915 4127 True 678.166667 2398 86.789667 256 4650 6 chr2A.!!$R1 4394

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
236 240 0.250901 ATGCCAAGAGAGTTGCCGTT 60.251 50.0 0.0 0.0 0.0 4.44 F
1655 1760 0.178533 TCTTCCCGTTGTGTTTCCGT 59.821 50.0 0.0 0.0 0.0 4.69 F
1662 1767 0.232303 GTTGTGTTTCCGTCTCTGCG 59.768 55.0 0.0 0.0 0.0 5.18 F
1733 1843 0.312416 CGCCTGAATCTACCTCTCCG 59.688 60.0 0.0 0.0 0.0 4.63 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1751 1861 0.166814 GCATTTGTGAGCTGACGGAC 59.833 55.000 0.00 0.00 0.00 4.79 R
3481 3723 0.179062 CAAATCCTCTCCGGCCAGAG 60.179 60.000 9.96 9.96 39.89 3.35 R
3579 3865 0.236711 CTGGACAAGCAAGAACGCAG 59.763 55.000 0.00 0.00 0.00 5.18 R
3712 3998 2.333926 TCGTCACAATTGGTCATCGTC 58.666 47.619 10.83 0.00 0.00 4.20 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 4.034510 GGAAAGAATAATGAGAGCACACCG 59.965 45.833 0.00 0.00 0.00 4.94
29 30 4.184629 AGAATAATGAGAGCACACCGAAC 58.815 43.478 0.00 0.00 0.00 3.95
68 69 2.907696 TCCTTGGACCCGATTAAACAGA 59.092 45.455 0.00 0.00 0.00 3.41
115 116 2.118404 CACACACACACCACCCACC 61.118 63.158 0.00 0.00 0.00 4.61
154 158 8.474025 TCTTCTTCTCCTTCTAGATTCATTCAC 58.526 37.037 0.00 0.00 0.00 3.18
161 165 6.211384 TCCTTCTAGATTCATTCACAGTCACA 59.789 38.462 0.00 0.00 0.00 3.58
162 166 6.312426 CCTTCTAGATTCATTCACAGTCACAC 59.688 42.308 0.00 0.00 0.00 3.82
163 167 6.345096 TCTAGATTCATTCACAGTCACACA 57.655 37.500 0.00 0.00 0.00 3.72
165 169 3.742882 AGATTCATTCACAGTCACACACG 59.257 43.478 0.00 0.00 0.00 4.49
166 170 1.864565 TCATTCACAGTCACACACGG 58.135 50.000 0.00 0.00 0.00 4.94
167 171 1.410882 TCATTCACAGTCACACACGGA 59.589 47.619 0.00 0.00 0.00 4.69
168 172 1.526887 CATTCACAGTCACACACGGAC 59.473 52.381 0.00 0.00 35.50 4.79
169 173 0.821517 TTCACAGTCACACACGGACT 59.178 50.000 0.00 0.00 46.11 3.85
170 174 1.682740 TCACAGTCACACACGGACTA 58.317 50.000 0.00 0.00 43.47 2.59
171 175 1.335810 TCACAGTCACACACGGACTAC 59.664 52.381 0.00 0.00 43.47 2.73
172 176 1.337071 CACAGTCACACACGGACTACT 59.663 52.381 0.00 0.00 43.47 2.57
173 177 2.029623 ACAGTCACACACGGACTACTT 58.970 47.619 0.00 0.00 43.47 2.24
174 178 2.429610 ACAGTCACACACGGACTACTTT 59.570 45.455 0.00 0.00 43.47 2.66
175 179 3.633525 ACAGTCACACACGGACTACTTTA 59.366 43.478 0.00 0.00 43.47 1.85
176 180 4.280174 ACAGTCACACACGGACTACTTTAT 59.720 41.667 0.00 0.00 43.47 1.40
177 181 5.221382 ACAGTCACACACGGACTACTTTATT 60.221 40.000 0.00 0.00 43.47 1.40
178 182 5.694910 CAGTCACACACGGACTACTTTATTT 59.305 40.000 0.00 0.00 43.47 1.40
179 183 6.202188 CAGTCACACACGGACTACTTTATTTT 59.798 38.462 0.00 0.00 43.47 1.82
180 184 6.764560 AGTCACACACGGACTACTTTATTTTT 59.235 34.615 0.00 0.00 43.50 1.94
212 216 6.299805 AGACTACTTTATTCAGCACCATCA 57.700 37.500 0.00 0.00 0.00 3.07
227 231 4.648651 CACCATCATATCATGCCAAGAGA 58.351 43.478 0.00 0.00 0.00 3.10
228 232 4.695928 CACCATCATATCATGCCAAGAGAG 59.304 45.833 0.00 0.00 0.00 3.20
229 233 4.350225 ACCATCATATCATGCCAAGAGAGT 59.650 41.667 0.00 0.00 0.00 3.24
230 234 5.163120 ACCATCATATCATGCCAAGAGAGTT 60.163 40.000 0.00 0.00 0.00 3.01
231 235 5.181433 CCATCATATCATGCCAAGAGAGTTG 59.819 44.000 0.00 0.00 0.00 3.16
232 236 4.132336 TCATATCATGCCAAGAGAGTTGC 58.868 43.478 0.00 0.00 0.00 4.17
233 237 1.760192 ATCATGCCAAGAGAGTTGCC 58.240 50.000 0.00 0.00 0.00 4.52
234 238 0.674581 TCATGCCAAGAGAGTTGCCG 60.675 55.000 0.00 0.00 0.00 5.69
236 240 0.250901 ATGCCAAGAGAGTTGCCGTT 60.251 50.000 0.00 0.00 0.00 4.44
237 241 1.165907 TGCCAAGAGAGTTGCCGTTG 61.166 55.000 0.00 0.00 0.00 4.10
238 242 1.856265 GCCAAGAGAGTTGCCGTTGG 61.856 60.000 0.00 0.00 40.63 3.77
239 243 0.535102 CCAAGAGAGTTGCCGTTGGT 60.535 55.000 0.00 0.00 34.19 3.67
241 245 2.489971 CAAGAGAGTTGCCGTTGGTAA 58.510 47.619 0.00 0.00 0.00 2.85
242 246 2.875933 CAAGAGAGTTGCCGTTGGTAAA 59.124 45.455 0.00 0.00 0.00 2.01
243 247 3.202829 AGAGAGTTGCCGTTGGTAAAA 57.797 42.857 0.00 0.00 0.00 1.52
244 248 3.751518 AGAGAGTTGCCGTTGGTAAAAT 58.248 40.909 0.00 0.00 0.00 1.82
245 249 3.502211 AGAGAGTTGCCGTTGGTAAAATG 59.498 43.478 0.00 0.00 0.00 2.32
246 250 3.482436 AGAGTTGCCGTTGGTAAAATGA 58.518 40.909 0.00 0.00 0.00 2.57
247 251 4.079253 AGAGTTGCCGTTGGTAAAATGAT 58.921 39.130 0.00 0.00 0.00 2.45
248 252 4.082787 AGAGTTGCCGTTGGTAAAATGATG 60.083 41.667 0.00 0.00 0.00 3.07
249 253 3.056891 AGTTGCCGTTGGTAAAATGATGG 60.057 43.478 0.00 0.00 0.00 3.51
250 254 2.520069 TGCCGTTGGTAAAATGATGGT 58.480 42.857 0.00 0.00 0.00 3.55
251 255 2.490115 TGCCGTTGGTAAAATGATGGTC 59.510 45.455 0.00 0.00 0.00 4.02
268 272 4.135153 CTCTGGTCGGCACCTCGG 62.135 72.222 7.47 0.00 44.17 4.63
273 277 4.047059 GTCGGCACCTCGGTCGAA 62.047 66.667 2.03 0.00 33.33 3.71
274 278 3.066190 TCGGCACCTCGGTCGAAT 61.066 61.111 0.00 0.00 0.00 3.34
275 279 2.885644 CGGCACCTCGGTCGAATG 60.886 66.667 0.00 0.00 0.00 2.67
276 280 3.195698 GGCACCTCGGTCGAATGC 61.196 66.667 16.25 16.25 36.28 3.56
277 281 2.434185 GCACCTCGGTCGAATGCA 60.434 61.111 18.38 0.00 36.73 3.96
278 282 1.815421 GCACCTCGGTCGAATGCAT 60.815 57.895 18.38 0.00 36.73 3.96
279 283 2.009108 CACCTCGGTCGAATGCATG 58.991 57.895 0.00 0.00 0.00 4.06
280 284 1.815421 ACCTCGGTCGAATGCATGC 60.815 57.895 11.82 11.82 0.00 4.06
282 286 2.874694 CTCGGTCGAATGCATGCGG 61.875 63.158 26.54 11.21 0.00 5.69
283 287 3.195002 CGGTCGAATGCATGCGGT 61.195 61.111 26.54 2.35 0.00 5.68
284 288 2.404789 GGTCGAATGCATGCGGTG 59.595 61.111 26.54 0.00 0.00 4.94
292 298 3.487376 CGAATGCATGCGGTGATAAACTT 60.487 43.478 19.95 0.00 0.00 2.66
296 302 2.161410 GCATGCGGTGATAAACTTGTCA 59.839 45.455 0.00 0.00 0.00 3.58
304 310 2.224426 TGATAAACTTGTCACTGCCGGT 60.224 45.455 1.90 0.00 0.00 5.28
332 338 3.031736 TGTACTAGATTGCCCCTGTCTC 58.968 50.000 0.00 0.00 0.00 3.36
333 339 1.501582 ACTAGATTGCCCCTGTCTCC 58.498 55.000 0.00 0.00 0.00 3.71
335 341 0.694444 TAGATTGCCCCTGTCTCCCC 60.694 60.000 0.00 0.00 0.00 4.81
344 350 0.391661 CCTGTCTCCCCGTTGACATG 60.392 60.000 0.00 0.00 41.56 3.21
349 355 1.303236 TCCCCGTTGACATGGCAAG 60.303 57.895 16.10 8.94 0.00 4.01
350 356 1.603455 CCCCGTTGACATGGCAAGT 60.603 57.895 16.10 0.00 0.00 3.16
353 359 1.335872 CCCGTTGACATGGCAAGTTTC 60.336 52.381 16.10 1.31 0.00 2.78
354 360 1.608590 CCGTTGACATGGCAAGTTTCT 59.391 47.619 16.10 0.00 0.00 2.52
359 365 1.873591 GACATGGCAAGTTTCTCACGT 59.126 47.619 0.00 0.00 0.00 4.49
360 366 3.064207 GACATGGCAAGTTTCTCACGTA 58.936 45.455 0.00 0.00 0.00 3.57
361 367 2.806244 ACATGGCAAGTTTCTCACGTAC 59.194 45.455 0.00 0.00 0.00 3.67
362 368 1.493772 TGGCAAGTTTCTCACGTACG 58.506 50.000 15.01 15.01 0.00 3.67
363 369 1.202440 TGGCAAGTTTCTCACGTACGT 60.202 47.619 16.72 16.72 0.00 3.57
364 370 2.034432 TGGCAAGTTTCTCACGTACGTA 59.966 45.455 22.34 2.28 0.00 3.57
365 371 2.406357 GGCAAGTTTCTCACGTACGTAC 59.594 50.000 22.34 15.90 0.00 3.67
366 372 3.303406 GCAAGTTTCTCACGTACGTACT 58.697 45.455 22.34 17.31 0.00 2.73
367 373 3.360168 GCAAGTTTCTCACGTACGTACTC 59.640 47.826 22.34 5.96 0.00 2.59
368 374 4.781071 CAAGTTTCTCACGTACGTACTCT 58.219 43.478 22.34 10.63 0.00 3.24
369 375 4.660352 AGTTTCTCACGTACGTACTCTC 57.340 45.455 22.34 10.13 0.00 3.20
370 376 4.060900 AGTTTCTCACGTACGTACTCTCA 58.939 43.478 22.34 0.75 0.00 3.27
371 377 4.694509 AGTTTCTCACGTACGTACTCTCAT 59.305 41.667 22.34 2.73 0.00 2.90
376 382 6.743110 TCTCACGTACGTACTCTCATAGTAT 58.257 40.000 22.34 0.00 42.63 2.12
382 388 9.400638 ACGTACGTACTCTCATAGTATTAGTAC 57.599 37.037 21.41 12.91 42.63 2.73
401 407 5.411781 AGTACCATTTTCGTGATCAGTCTC 58.588 41.667 0.00 0.00 0.00 3.36
440 457 1.003233 GTGACAGTCCCCAGAAGGC 60.003 63.158 0.00 0.00 0.00 4.35
461 478 4.813697 GGCTTTGTATTTCTGTTGCCAAAA 59.186 37.500 0.00 0.00 38.99 2.44
462 479 5.277297 GGCTTTGTATTTCTGTTGCCAAAAC 60.277 40.000 0.00 0.00 38.99 2.43
463 480 5.277297 GCTTTGTATTTCTGTTGCCAAAACC 60.277 40.000 0.00 0.00 0.00 3.27
464 481 5.344743 TTGTATTTCTGTTGCCAAAACCA 57.655 34.783 0.00 0.00 0.00 3.67
465 482 5.344743 TGTATTTCTGTTGCCAAAACCAA 57.655 34.783 0.00 0.00 0.00 3.67
466 483 5.734720 TGTATTTCTGTTGCCAAAACCAAA 58.265 33.333 0.00 0.00 0.00 3.28
471 488 0.812014 GTTGCCAAAACCAAACCCCG 60.812 55.000 0.00 0.00 0.00 5.73
472 489 1.265454 TTGCCAAAACCAAACCCCGT 61.265 50.000 0.00 0.00 0.00 5.28
477 494 2.628657 CCAAAACCAAACCCCGTGAATA 59.371 45.455 0.00 0.00 0.00 1.75
570 595 2.823154 CCAATTCCCATTAACCACACGT 59.177 45.455 0.00 0.00 0.00 4.49
612 640 1.938596 AGGCTCCTCTCCTCTCCCA 60.939 63.158 0.00 0.00 0.00 4.37
614 642 1.309688 GCTCCTCTCCTCTCCCACT 59.690 63.158 0.00 0.00 0.00 4.00
644 672 0.991355 ACTTGACCCCTTCCACCACA 60.991 55.000 0.00 0.00 0.00 4.17
645 673 0.537371 CTTGACCCCTTCCACCACAC 60.537 60.000 0.00 0.00 0.00 3.82
646 674 2.002018 TTGACCCCTTCCACCACACC 62.002 60.000 0.00 0.00 0.00 4.16
647 675 2.369015 ACCCCTTCCACCACACCA 60.369 61.111 0.00 0.00 0.00 4.17
648 676 2.411765 GACCCCTTCCACCACACCAG 62.412 65.000 0.00 0.00 0.00 4.00
649 677 2.282462 CCCTTCCACCACACCAGC 60.282 66.667 0.00 0.00 0.00 4.85
650 678 2.515398 CCTTCCACCACACCAGCA 59.485 61.111 0.00 0.00 0.00 4.41
651 679 1.898574 CCTTCCACCACACCAGCAC 60.899 63.158 0.00 0.00 0.00 4.40
652 680 1.898574 CTTCCACCACACCAGCACC 60.899 63.158 0.00 0.00 0.00 5.01
653 681 2.623094 CTTCCACCACACCAGCACCA 62.623 60.000 0.00 0.00 0.00 4.17
654 682 2.902423 TTCCACCACACCAGCACCAC 62.902 60.000 0.00 0.00 0.00 4.16
713 741 3.039526 CTCCCTCCCTCCCTCCCT 61.040 72.222 0.00 0.00 0.00 4.20
715 743 4.179599 CCCTCCCTCCCTCCCTCC 62.180 77.778 0.00 0.00 0.00 4.30
717 745 3.039526 CTCCCTCCCTCCCTCCCT 61.040 72.222 0.00 0.00 0.00 4.20
718 746 3.036959 TCCCTCCCTCCCTCCCTC 61.037 72.222 0.00 0.00 0.00 4.30
719 747 4.179599 CCCTCCCTCCCTCCCTCC 62.180 77.778 0.00 0.00 0.00 4.30
720 748 4.179599 CCTCCCTCCCTCCCTCCC 62.180 77.778 0.00 0.00 0.00 4.30
721 749 3.039526 CTCCCTCCCTCCCTCCCT 61.040 72.222 0.00 0.00 0.00 4.20
722 750 3.036959 TCCCTCCCTCCCTCCCTC 61.037 72.222 0.00 0.00 0.00 4.30
723 751 4.179599 CCCTCCCTCCCTCCCTCC 62.180 77.778 0.00 0.00 0.00 4.30
724 752 4.179599 CCTCCCTCCCTCCCTCCC 62.180 77.778 0.00 0.00 0.00 4.30
725 753 3.039526 CTCCCTCCCTCCCTCCCT 61.040 72.222 0.00 0.00 0.00 4.20
726 754 2.543637 TCCCTCCCTCCCTCCCTT 60.544 66.667 0.00 0.00 0.00 3.95
727 755 2.191846 TCCCTCCCTCCCTCCCTTT 61.192 63.158 0.00 0.00 0.00 3.11
728 756 1.694525 CCCTCCCTCCCTCCCTTTC 60.695 68.421 0.00 0.00 0.00 2.62
729 757 1.398234 CCTCCCTCCCTCCCTTTCT 59.602 63.158 0.00 0.00 0.00 2.52
730 758 0.692756 CCTCCCTCCCTCCCTTTCTC 60.693 65.000 0.00 0.00 0.00 2.87
731 759 0.692756 CTCCCTCCCTCCCTTTCTCC 60.693 65.000 0.00 0.00 0.00 3.71
732 760 1.694525 CCCTCCCTCCCTTTCTCCC 60.695 68.421 0.00 0.00 0.00 4.30
733 761 1.398234 CCTCCCTCCCTTTCTCCCT 59.602 63.158 0.00 0.00 0.00 4.20
734 762 0.692756 CCTCCCTCCCTTTCTCCCTC 60.693 65.000 0.00 0.00 0.00 4.30
735 763 0.692756 CTCCCTCCCTTTCTCCCTCC 60.693 65.000 0.00 0.00 0.00 4.30
742 770 1.490910 CCCTTTCTCCCTCCCATACAC 59.509 57.143 0.00 0.00 0.00 2.90
746 774 1.568504 TCTCCCTCCCATACACACAC 58.431 55.000 0.00 0.00 0.00 3.82
760 788 0.253044 ACACACACACACCAAGCTCT 59.747 50.000 0.00 0.00 0.00 4.09
762 790 1.064505 CACACACACACCAAGCTCTTG 59.935 52.381 2.74 2.74 40.13 3.02
855 888 3.430862 CGCTAGCGGGCAAGCAAA 61.431 61.111 29.29 0.00 38.70 3.68
856 889 2.764314 CGCTAGCGGGCAAGCAAAT 61.764 57.895 29.29 0.00 38.70 2.32
861 910 2.929903 GCGGGCAAGCAAATCCACA 61.930 57.895 0.00 0.00 37.05 4.17
867 916 1.902918 AAGCAAATCCACAGCGCCA 60.903 52.632 2.29 0.00 0.00 5.69
917 966 2.450609 TTGGCTCGTCACTTTCCTAC 57.549 50.000 0.00 0.00 0.00 3.18
983 1057 2.282887 GGCGGGCCCAAGAAAGAA 60.283 61.111 24.92 0.00 0.00 2.52
984 1058 2.343426 GGCGGGCCCAAGAAAGAAG 61.343 63.158 24.92 2.32 0.00 2.85
985 1059 2.343426 GCGGGCCCAAGAAAGAAGG 61.343 63.158 24.92 1.45 0.00 3.46
986 1060 1.678970 CGGGCCCAAGAAAGAAGGG 60.679 63.158 24.92 0.00 45.68 3.95
987 1061 1.305297 GGGCCCAAGAAAGAAGGGG 60.305 63.158 19.95 0.00 43.04 4.79
988 1062 1.305297 GGCCCAAGAAAGAAGGGGG 60.305 63.158 0.00 0.00 43.04 5.40
1062 1136 0.517316 CGCTACTTCTTGTTGGTGCC 59.483 55.000 0.00 0.00 0.00 5.01
1229 1312 2.943033 GGCTTGCAACGGTCAGTATTAT 59.057 45.455 0.00 0.00 0.00 1.28
1245 1336 6.099701 TCAGTATTATTACTCACCATGCCTGT 59.900 38.462 0.00 0.00 36.50 4.00
1258 1349 2.877097 TGCCTGTTGCTTCTTCCATA 57.123 45.000 0.00 0.00 42.00 2.74
1259 1350 3.370840 TGCCTGTTGCTTCTTCCATAT 57.629 42.857 0.00 0.00 42.00 1.78
1276 1367 6.554334 TCCATATTTGCGCTAATTAGTTCC 57.446 37.500 21.57 3.78 0.00 3.62
1278 1369 6.770785 TCCATATTTGCGCTAATTAGTTCCTT 59.229 34.615 21.57 0.00 0.00 3.36
1280 1371 7.255104 CCATATTTGCGCTAATTAGTTCCTTCA 60.255 37.037 21.57 0.88 0.00 3.02
1281 1372 5.950758 TTTGCGCTAATTAGTTCCTTCAA 57.049 34.783 9.73 6.70 0.00 2.69
1282 1373 5.545658 TTGCGCTAATTAGTTCCTTCAAG 57.454 39.130 9.73 0.00 0.00 3.02
1345 1436 2.083774 GCGGTTCTTGGAATCATGTGA 58.916 47.619 0.00 0.00 0.00 3.58
1360 1451 4.707105 TCATGTGATTACATTCATCGCCT 58.293 39.130 0.00 0.00 45.01 5.52
1422 1513 4.649977 TGTTGTTAACGTTCGTTTCCTTG 58.350 39.130 15.40 0.00 0.00 3.61
1425 1516 5.738118 TGTTAACGTTCGTTTCCTTGATT 57.262 34.783 15.40 0.00 0.00 2.57
1490 1585 3.941657 AAGCGCGGAGGAACAGAGC 62.942 63.158 8.83 0.00 39.31 4.09
1502 1597 1.261619 GAACAGAGCAAGTGTCGGTTG 59.738 52.381 0.00 0.00 33.24 3.77
1572 1667 1.065709 TGATAGCCGTTCCTTTCACCC 60.066 52.381 0.00 0.00 0.00 4.61
1642 1747 3.256136 CGGTAGTGGTAGATCATCTTCCC 59.744 52.174 7.81 2.35 33.52 3.97
1643 1748 3.256136 GGTAGTGGTAGATCATCTTCCCG 59.744 52.174 7.81 0.00 33.52 5.14
1644 1749 3.033659 AGTGGTAGATCATCTTCCCGT 57.966 47.619 7.81 0.00 33.52 5.28
1645 1750 3.375699 AGTGGTAGATCATCTTCCCGTT 58.624 45.455 7.81 0.00 33.52 4.44
1646 1751 3.133003 AGTGGTAGATCATCTTCCCGTTG 59.867 47.826 7.81 0.00 33.52 4.10
1647 1752 3.104512 TGGTAGATCATCTTCCCGTTGT 58.895 45.455 7.81 0.00 33.52 3.32
1648 1753 3.118775 TGGTAGATCATCTTCCCGTTGTG 60.119 47.826 7.81 0.00 33.52 3.33
1649 1754 3.118738 GGTAGATCATCTTCCCGTTGTGT 60.119 47.826 0.00 0.00 28.76 3.72
1650 1755 3.703001 AGATCATCTTCCCGTTGTGTT 57.297 42.857 0.00 0.00 0.00 3.32
1651 1756 4.021102 AGATCATCTTCCCGTTGTGTTT 57.979 40.909 0.00 0.00 0.00 2.83
1652 1757 4.003648 AGATCATCTTCCCGTTGTGTTTC 58.996 43.478 0.00 0.00 0.00 2.78
1653 1758 2.500229 TCATCTTCCCGTTGTGTTTCC 58.500 47.619 0.00 0.00 0.00 3.13
1654 1759 1.196808 CATCTTCCCGTTGTGTTTCCG 59.803 52.381 0.00 0.00 0.00 4.30
1655 1760 0.178533 TCTTCCCGTTGTGTTTCCGT 59.821 50.000 0.00 0.00 0.00 4.69
1656 1761 0.584876 CTTCCCGTTGTGTTTCCGTC 59.415 55.000 0.00 0.00 0.00 4.79
1662 1767 0.232303 GTTGTGTTTCCGTCTCTGCG 59.768 55.000 0.00 0.00 0.00 5.18
1727 1836 1.883084 CCGTGCGCCTGAATCTACC 60.883 63.158 4.18 0.00 0.00 3.18
1733 1843 0.312416 CGCCTGAATCTACCTCTCCG 59.688 60.000 0.00 0.00 0.00 4.63
1734 1844 1.404843 GCCTGAATCTACCTCTCCGT 58.595 55.000 0.00 0.00 0.00 4.69
1736 1846 1.067821 CCTGAATCTACCTCTCCGTGC 59.932 57.143 0.00 0.00 0.00 5.34
1751 1861 1.325640 CCGTGCGTTGATCTCTTCATG 59.674 52.381 0.00 0.00 33.34 3.07
1762 1874 1.474478 TCTCTTCATGTCCGTCAGCTC 59.526 52.381 0.00 0.00 0.00 4.09
1792 1940 4.213482 GCAGTTTCGTCAAGAATGTTAGGT 59.787 41.667 0.00 0.00 38.86 3.08
1850 1998 0.685097 TCCCTTCTCTTCCCGTGTTG 59.315 55.000 0.00 0.00 0.00 3.33
1870 2061 3.950397 TGGGTAATGCCAGTAGAAAGTG 58.050 45.455 0.00 0.00 39.65 3.16
1944 2152 1.396301 GTGCAGCTACGTACTACTCGT 59.604 52.381 0.00 0.00 43.86 4.18
1996 2208 1.374631 GCAGATCGCACTGACCACA 60.375 57.895 11.66 0.00 41.79 4.17
2005 2217 1.943968 GCACTGACCACAAGCCGATTA 60.944 52.381 0.00 0.00 0.00 1.75
2006 2218 2.632377 CACTGACCACAAGCCGATTAT 58.368 47.619 0.00 0.00 0.00 1.28
2049 2261 4.717629 CGTTGCAGTCCTCGGCGA 62.718 66.667 10.14 10.14 37.57 5.54
2069 2281 3.958822 CTCGCGGGTGTACCACGTC 62.959 68.421 6.13 6.17 40.22 4.34
2169 2381 2.751436 CCTCCAACGCCACCATGG 60.751 66.667 11.19 11.19 41.55 3.66
2240 2452 2.601067 TACCTCGTCAACGGCCCA 60.601 61.111 0.00 0.00 40.29 5.36
2327 2546 0.945265 GCGCAATGTGCCAATGTGTT 60.945 50.000 7.68 0.00 41.12 3.32
2329 2548 2.878580 CGCAATGTGCCAATGTGTTAT 58.121 42.857 0.00 0.00 41.12 1.89
2330 2549 2.599527 CGCAATGTGCCAATGTGTTATG 59.400 45.455 0.00 0.00 41.12 1.90
2331 2550 2.931325 GCAATGTGCCAATGTGTTATGG 59.069 45.455 0.00 0.00 37.42 2.74
2332 2551 3.617045 GCAATGTGCCAATGTGTTATGGT 60.617 43.478 0.00 0.00 37.42 3.55
2333 2552 3.872511 ATGTGCCAATGTGTTATGGTG 57.127 42.857 0.00 0.00 39.00 4.17
2334 2553 1.891811 TGTGCCAATGTGTTATGGTGG 59.108 47.619 0.00 0.00 39.00 4.61
2342 2561 4.574674 ATGTGTTATGGTGGTGTCTGAT 57.425 40.909 0.00 0.00 0.00 2.90
2352 2571 2.027745 GTGGTGTCTGATGATCACTGGT 60.028 50.000 0.00 0.00 33.30 4.00
2361 2580 1.741770 GATCACTGGTGTGCGTCCC 60.742 63.158 0.53 0.00 43.49 4.46
2362 2581 2.449031 GATCACTGGTGTGCGTCCCA 62.449 60.000 0.53 0.00 43.49 4.37
2363 2582 2.731691 ATCACTGGTGTGCGTCCCAC 62.732 60.000 0.53 0.00 43.49 4.61
2433 2652 1.360551 CCGGTACCTGATCGAGCTG 59.639 63.158 10.90 0.38 31.20 4.24
2484 2715 3.533691 GAGTACGTGACGCTGCGC 61.534 66.667 23.51 15.27 0.00 6.09
2504 2735 0.321919 GACCTGATGCTGGACTGCAA 60.322 55.000 7.93 0.00 46.61 4.08
2572 2803 1.067142 TCGACAACTGCTACATCACCC 60.067 52.381 0.00 0.00 0.00 4.61
2573 2804 1.337728 CGACAACTGCTACATCACCCA 60.338 52.381 0.00 0.00 0.00 4.51
3465 3707 7.662258 TCGTTTGTTCCTAGTGAAATTTATGGA 59.338 33.333 0.00 0.00 33.94 3.41
3478 3720 0.548989 TTATGGATTGGACACCCGGG 59.451 55.000 22.25 22.25 34.29 5.73
3479 3721 1.349542 TATGGATTGGACACCCGGGG 61.350 60.000 27.92 16.65 34.29 5.73
3480 3722 4.815108 GGATTGGACACCCGGGGC 62.815 72.222 27.92 13.83 34.29 5.80
3481 3723 4.815108 GATTGGACACCCGGGGCC 62.815 72.222 27.92 22.84 34.29 5.80
3505 3747 0.748367 GCCGGAGAGGATTTGAACCC 60.748 60.000 5.05 0.00 45.00 4.11
3514 3756 1.595093 GATTTGAACCCAGGTGGCGG 61.595 60.000 0.00 0.00 37.83 6.13
3533 3818 7.723172 GGTGGCGGGACTACTATATAGTTATAT 59.277 40.741 20.21 4.43 37.73 0.86
3573 3859 2.669781 TCAGAATGGATCATTTGGGGC 58.330 47.619 0.00 0.00 33.90 5.80
3577 3863 3.116862 AGAATGGATCATTTGGGGCTCAT 60.117 43.478 0.00 0.00 33.90 2.90
3579 3865 1.133388 TGGATCATTTGGGGCTCATCC 60.133 52.381 0.00 0.00 0.00 3.51
3583 3869 1.454479 ATTTGGGGCTCATCCTGCG 60.454 57.895 0.00 0.00 34.39 5.18
3584 3870 2.215451 ATTTGGGGCTCATCCTGCGT 62.215 55.000 0.00 0.00 34.39 5.24
3585 3871 2.424842 TTTGGGGCTCATCCTGCGTT 62.425 55.000 0.00 0.00 34.39 4.84
3586 3872 2.514824 GGGGCTCATCCTGCGTTC 60.515 66.667 0.00 0.00 34.39 3.95
3587 3873 2.586792 GGGCTCATCCTGCGTTCT 59.413 61.111 0.00 0.00 34.39 3.01
3588 3874 1.078143 GGGCTCATCCTGCGTTCTT 60.078 57.895 0.00 0.00 34.39 2.52
3589 3875 1.372087 GGGCTCATCCTGCGTTCTTG 61.372 60.000 0.00 0.00 34.39 3.02
3590 3876 1.427020 GCTCATCCTGCGTTCTTGC 59.573 57.895 0.00 0.00 0.00 4.01
3591 3877 1.023513 GCTCATCCTGCGTTCTTGCT 61.024 55.000 0.00 0.00 35.36 3.91
3592 3878 1.446907 CTCATCCTGCGTTCTTGCTT 58.553 50.000 0.00 0.00 35.36 3.91
3593 3879 1.129998 CTCATCCTGCGTTCTTGCTTG 59.870 52.381 0.00 0.00 35.36 4.01
3594 3880 0.877071 CATCCTGCGTTCTTGCTTGT 59.123 50.000 0.00 0.00 35.36 3.16
3595 3881 1.135859 CATCCTGCGTTCTTGCTTGTC 60.136 52.381 0.00 0.00 35.36 3.18
3596 3882 0.884704 TCCTGCGTTCTTGCTTGTCC 60.885 55.000 0.00 0.00 35.36 4.02
3597 3883 1.165907 CCTGCGTTCTTGCTTGTCCA 61.166 55.000 0.00 0.00 35.36 4.02
3598 3884 0.236711 CTGCGTTCTTGCTTGTCCAG 59.763 55.000 0.00 0.00 35.36 3.86
3599 3885 0.179059 TGCGTTCTTGCTTGTCCAGA 60.179 50.000 0.00 0.00 35.36 3.86
3600 3886 0.944386 GCGTTCTTGCTTGTCCAGAA 59.056 50.000 0.00 0.00 0.00 3.02
3601 3887 1.537202 GCGTTCTTGCTTGTCCAGAAT 59.463 47.619 0.00 0.00 0.00 2.40
3602 3888 2.413371 GCGTTCTTGCTTGTCCAGAATC 60.413 50.000 0.00 0.00 0.00 2.52
3603 3889 2.807967 CGTTCTTGCTTGTCCAGAATCA 59.192 45.455 0.00 0.00 0.00 2.57
3604 3890 3.250762 CGTTCTTGCTTGTCCAGAATCAA 59.749 43.478 0.00 0.00 0.00 2.57
3605 3891 4.261155 CGTTCTTGCTTGTCCAGAATCAAA 60.261 41.667 0.00 0.00 0.00 2.69
3606 3892 5.591099 GTTCTTGCTTGTCCAGAATCAAAA 58.409 37.500 0.00 0.00 0.00 2.44
3607 3893 5.850557 TCTTGCTTGTCCAGAATCAAAAA 57.149 34.783 0.00 0.00 0.00 1.94
3631 3917 9.574516 AAAAACTCTTGTGTTATGTATCCTCTT 57.425 29.630 0.00 0.00 0.00 2.85
3632 3918 8.553459 AAACTCTTGTGTTATGTATCCTCTTG 57.447 34.615 0.00 0.00 0.00 3.02
3633 3919 7.482169 ACTCTTGTGTTATGTATCCTCTTGA 57.518 36.000 0.00 0.00 0.00 3.02
3634 3920 8.083828 ACTCTTGTGTTATGTATCCTCTTGAT 57.916 34.615 0.00 0.00 37.49 2.57
3635 3921 7.984050 ACTCTTGTGTTATGTATCCTCTTGATG 59.016 37.037 0.00 0.00 34.76 3.07
3636 3922 6.763135 TCTTGTGTTATGTATCCTCTTGATGC 59.237 38.462 0.00 0.00 36.68 3.91
3637 3923 6.239217 TGTGTTATGTATCCTCTTGATGCT 57.761 37.500 0.00 0.00 37.04 3.79
3638 3924 6.653020 TGTGTTATGTATCCTCTTGATGCTT 58.347 36.000 0.00 0.00 37.04 3.91
3639 3925 6.763135 TGTGTTATGTATCCTCTTGATGCTTC 59.237 38.462 0.00 0.00 37.04 3.86
3640 3926 6.763135 GTGTTATGTATCCTCTTGATGCTTCA 59.237 38.462 0.00 0.00 37.04 3.02
3641 3927 7.443575 GTGTTATGTATCCTCTTGATGCTTCAT 59.556 37.037 2.75 0.00 37.04 2.57
3642 3928 7.994911 TGTTATGTATCCTCTTGATGCTTCATT 59.005 33.333 2.75 0.00 37.04 2.57
3643 3929 8.844244 GTTATGTATCCTCTTGATGCTTCATTT 58.156 33.333 2.75 0.00 37.04 2.32
3644 3930 6.932356 TGTATCCTCTTGATGCTTCATTTC 57.068 37.500 2.75 0.00 37.04 2.17
3645 3931 6.417258 TGTATCCTCTTGATGCTTCATTTCA 58.583 36.000 2.75 0.00 37.04 2.69
3646 3932 6.885918 TGTATCCTCTTGATGCTTCATTTCAA 59.114 34.615 2.75 0.00 37.04 2.69
3647 3933 5.892160 TCCTCTTGATGCTTCATTTCAAG 57.108 39.130 2.75 5.72 44.89 3.02
3660 3946 8.031848 GCTTCATTTCAAGCCAATAAAATTCA 57.968 30.769 0.00 0.00 42.68 2.57
3661 3947 7.959109 GCTTCATTTCAAGCCAATAAAATTCAC 59.041 33.333 0.00 0.00 42.68 3.18
3662 3948 9.211485 CTTCATTTCAAGCCAATAAAATTCACT 57.789 29.630 0.00 0.00 0.00 3.41
3663 3949 8.761575 TCATTTCAAGCCAATAAAATTCACTC 57.238 30.769 0.00 0.00 0.00 3.51
3664 3950 8.587608 TCATTTCAAGCCAATAAAATTCACTCT 58.412 29.630 0.00 0.00 0.00 3.24
3665 3951 8.866956 CATTTCAAGCCAATAAAATTCACTCTC 58.133 33.333 0.00 0.00 0.00 3.20
3666 3952 7.765695 TTCAAGCCAATAAAATTCACTCTCT 57.234 32.000 0.00 0.00 0.00 3.10
3667 3953 7.149569 TCAAGCCAATAAAATTCACTCTCTG 57.850 36.000 0.00 0.00 0.00 3.35
3668 3954 6.716628 TCAAGCCAATAAAATTCACTCTCTGT 59.283 34.615 0.00 0.00 0.00 3.41
3670 3956 5.416952 AGCCAATAAAATTCACTCTCTGTGG 59.583 40.000 0.00 0.00 46.20 4.17
3671 3957 5.415701 GCCAATAAAATTCACTCTCTGTGGA 59.584 40.000 0.00 0.00 46.20 4.02
3672 3958 6.071952 GCCAATAAAATTCACTCTCTGTGGAA 60.072 38.462 0.00 0.00 46.20 3.53
3673 3959 7.523709 GCCAATAAAATTCACTCTCTGTGGAAA 60.524 37.037 0.00 0.00 46.20 3.13
3674 3960 8.359642 CCAATAAAATTCACTCTCTGTGGAAAA 58.640 33.333 0.00 0.00 46.20 2.29
3675 3961 9.748708 CAATAAAATTCACTCTCTGTGGAAAAA 57.251 29.630 0.00 0.00 46.20 1.94
3700 3986 9.856488 AAAGAATCAAAATGTCTCAAGATCATG 57.144 29.630 0.00 0.00 0.00 3.07
3701 3987 7.997482 AGAATCAAAATGTCTCAAGATCATGG 58.003 34.615 0.00 0.00 0.00 3.66
3702 3988 7.832685 AGAATCAAAATGTCTCAAGATCATGGA 59.167 33.333 0.00 0.00 0.00 3.41
3703 3989 7.949690 ATCAAAATGTCTCAAGATCATGGAA 57.050 32.000 0.00 0.00 0.00 3.53
3704 3990 7.387119 TCAAAATGTCTCAAGATCATGGAAG 57.613 36.000 0.00 0.00 0.00 3.46
3709 3995 9.690913 AAATGTCTCAAGATCATGGAAGAATTA 57.309 29.630 0.00 0.00 0.00 1.40
3710 3996 9.690913 AATGTCTCAAGATCATGGAAGAATTAA 57.309 29.630 0.00 0.00 0.00 1.40
3712 3998 9.170734 TGTCTCAAGATCATGGAAGAATTAAAG 57.829 33.333 0.00 0.00 0.00 1.85
3713 3999 9.388506 GTCTCAAGATCATGGAAGAATTAAAGA 57.611 33.333 0.00 0.00 0.00 2.52
3714 4000 9.388506 TCTCAAGATCATGGAAGAATTAAAGAC 57.611 33.333 0.00 0.00 0.00 3.01
3715 4001 8.201554 TCAAGATCATGGAAGAATTAAAGACG 57.798 34.615 0.00 0.00 0.00 4.18
3716 4002 8.040727 TCAAGATCATGGAAGAATTAAAGACGA 58.959 33.333 0.00 0.00 0.00 4.20
3720 4006 7.539712 TCATGGAAGAATTAAAGACGATGAC 57.460 36.000 0.00 0.00 0.00 3.06
3721 4007 6.538742 TCATGGAAGAATTAAAGACGATGACC 59.461 38.462 0.00 0.00 0.00 4.02
3723 4009 6.234920 TGGAAGAATTAAAGACGATGACCAA 58.765 36.000 0.00 0.00 0.00 3.67
3729 4015 7.390440 AGAATTAAAGACGATGACCAATTGTGA 59.610 33.333 4.43 0.00 32.59 3.58
3737 4023 5.063438 ACGATGACCAATTGTGACGATAAAG 59.937 40.000 4.43 0.00 31.11 1.85
3740 4026 6.421377 TGACCAATTGTGACGATAAAGATG 57.579 37.500 4.43 0.00 0.00 2.90
3742 4028 6.652900 TGACCAATTGTGACGATAAAGATGAA 59.347 34.615 4.43 0.00 0.00 2.57
3743 4029 6.842163 ACCAATTGTGACGATAAAGATGAAC 58.158 36.000 4.43 0.00 0.00 3.18
3744 4030 5.959527 CCAATTGTGACGATAAAGATGAACG 59.040 40.000 4.43 0.00 0.00 3.95
3746 4032 7.401860 CAATTGTGACGATAAAGATGAACGAT 58.598 34.615 0.00 0.00 0.00 3.73
3747 4033 5.949233 TGTGACGATAAAGATGAACGATG 57.051 39.130 0.00 0.00 0.00 3.84
3748 4034 4.803613 TGTGACGATAAAGATGAACGATGG 59.196 41.667 0.00 0.00 0.00 3.51
3749 4035 5.041287 GTGACGATAAAGATGAACGATGGA 58.959 41.667 0.00 0.00 0.00 3.41
3751 4037 4.621991 ACGATAAAGATGAACGATGGAGG 58.378 43.478 0.00 0.00 0.00 4.30
3753 4039 2.044123 AAAGATGAACGATGGAGGCC 57.956 50.000 0.00 0.00 0.00 5.19
3754 4040 0.181350 AAGATGAACGATGGAGGCCC 59.819 55.000 0.00 0.00 0.00 5.80
3766 4052 2.204463 TGGAGGCCCAATCATGACTAA 58.796 47.619 0.00 0.00 40.09 2.24
3767 4053 2.092429 TGGAGGCCCAATCATGACTAAC 60.092 50.000 0.00 0.00 40.09 2.34
3769 4055 3.372025 GGAGGCCCAATCATGACTAACTT 60.372 47.826 0.00 0.00 0.00 2.66
3799 4285 1.166531 ACCGCTTTGTTCTGCTGGTC 61.167 55.000 0.00 0.00 33.41 4.02
3807 4293 0.946221 GTTCTGCTGGTCACCTGTCG 60.946 60.000 2.20 0.00 0.00 4.35
3813 4299 1.152631 TGGTCACCTGTCGGTCTCA 60.153 57.895 0.00 0.00 43.24 3.27
3816 4302 0.667792 GTCACCTGTCGGTCTCAAGC 60.668 60.000 0.00 0.00 43.24 4.01
3823 4309 3.114616 CGGTCTCAAGCGCACCAG 61.115 66.667 11.47 0.94 39.82 4.00
3841 4328 3.129287 ACCAGCTTTCATTCAAATAGCCG 59.871 43.478 0.00 0.00 32.36 5.52
3843 4330 4.380867 CCAGCTTTCATTCAAATAGCCGTT 60.381 41.667 0.00 0.00 32.36 4.44
3846 4333 4.436852 GCTTTCATTCAAATAGCCGTTCGA 60.437 41.667 0.00 0.00 0.00 3.71
3847 4334 5.730568 GCTTTCATTCAAATAGCCGTTCGAT 60.731 40.000 0.00 0.00 0.00 3.59
3849 4336 3.489416 TCATTCAAATAGCCGTTCGATCG 59.511 43.478 9.36 9.36 0.00 3.69
3851 4338 2.883574 TCAAATAGCCGTTCGATCGTT 58.116 42.857 15.94 5.46 0.00 3.85
3854 4341 2.795175 ATAGCCGTTCGATCGTTCAT 57.205 45.000 15.94 0.56 0.00 2.57
3859 4346 0.313469 CGTTCGATCGTTCATGCACG 60.313 55.000 15.94 11.85 41.78 5.34
3860 4347 0.584054 GTTCGATCGTTCATGCACGC 60.584 55.000 15.94 0.00 40.14 5.34
3862 4349 1.012998 CGATCGTTCATGCACGCAG 60.013 57.895 13.25 3.17 40.14 5.18
3863 4350 1.349627 GATCGTTCATGCACGCAGG 59.650 57.895 13.25 0.00 40.14 4.85
3893 4388 3.053831 TCCCGTTTTCTGATTCAGGAC 57.946 47.619 13.59 9.11 31.51 3.85
3903 4401 0.171231 GATTCAGGACGGCCAAAAGC 59.829 55.000 11.69 1.07 42.60 3.51
3904 4402 0.539438 ATTCAGGACGGCCAAAAGCA 60.539 50.000 11.69 0.00 46.50 3.91
3905 4403 1.452145 TTCAGGACGGCCAAAAGCAC 61.452 55.000 11.69 0.00 46.50 4.40
3908 4406 3.284449 GACGGCCAAAAGCACGGT 61.284 61.111 2.24 0.00 46.50 4.83
3913 4411 0.104120 GGCCAAAAGCACGGTTTTCT 59.896 50.000 0.00 0.00 46.50 2.52
3914 4412 1.208259 GCCAAAAGCACGGTTTTCTG 58.792 50.000 4.07 1.18 42.97 3.02
3915 4413 1.851658 CCAAAAGCACGGTTTTCTGG 58.148 50.000 4.07 1.66 0.00 3.86
3916 4414 1.407258 CCAAAAGCACGGTTTTCTGGA 59.593 47.619 4.07 0.00 0.00 3.86
3920 4418 1.595929 GCACGGTTTTCTGGACGGA 60.596 57.895 0.00 0.00 0.00 4.69
3921 4419 0.953960 GCACGGTTTTCTGGACGGAT 60.954 55.000 0.00 0.00 0.00 4.18
3935 4433 2.611518 GACGGATGGTTCAGTCTCAAG 58.388 52.381 0.00 0.00 41.94 3.02
3937 4435 2.289072 ACGGATGGTTCAGTCTCAAGTG 60.289 50.000 0.00 0.00 0.00 3.16
3938 4436 2.079925 GGATGGTTCAGTCTCAAGTGC 58.920 52.381 0.00 0.00 0.00 4.40
3939 4437 2.550855 GGATGGTTCAGTCTCAAGTGCA 60.551 50.000 0.00 0.00 0.00 4.57
3940 4438 1.953559 TGGTTCAGTCTCAAGTGCAC 58.046 50.000 9.40 9.40 0.00 4.57
3941 4439 1.230324 GGTTCAGTCTCAAGTGCACC 58.770 55.000 14.63 0.00 35.42 5.01
3942 4440 1.475034 GGTTCAGTCTCAAGTGCACCA 60.475 52.381 14.63 0.00 40.62 4.17
3943 4441 2.288666 GTTCAGTCTCAAGTGCACCAA 58.711 47.619 14.63 0.00 0.00 3.67
3944 4442 2.682856 GTTCAGTCTCAAGTGCACCAAA 59.317 45.455 14.63 0.00 0.00 3.28
3946 4444 2.092968 TCAGTCTCAAGTGCACCAAACT 60.093 45.455 14.63 7.64 0.00 2.66
3947 4445 2.684881 CAGTCTCAAGTGCACCAAACTT 59.315 45.455 14.63 0.00 38.40 2.66
3948 4446 3.129287 CAGTCTCAAGTGCACCAAACTTT 59.871 43.478 14.63 0.00 35.70 2.66
3950 4448 3.128589 GTCTCAAGTGCACCAAACTTTCA 59.871 43.478 14.63 0.00 35.70 2.69
3952 4450 4.402155 TCTCAAGTGCACCAAACTTTCATT 59.598 37.500 14.63 0.00 35.70 2.57
3954 4452 3.733443 AGTGCACCAAACTTTCATTCC 57.267 42.857 14.63 0.00 0.00 3.01
3955 4453 2.034558 AGTGCACCAAACTTTCATTCCG 59.965 45.455 14.63 0.00 0.00 4.30
3956 4454 2.034053 GTGCACCAAACTTTCATTCCGA 59.966 45.455 5.22 0.00 0.00 4.55
3958 4456 2.916111 CACCAAACTTTCATTCCGACG 58.084 47.619 0.00 0.00 0.00 5.12
3959 4457 1.877443 ACCAAACTTTCATTCCGACGG 59.123 47.619 7.84 7.84 0.00 4.79
3960 4458 1.877443 CCAAACTTTCATTCCGACGGT 59.123 47.619 14.79 0.00 0.00 4.83
3961 4459 2.350388 CCAAACTTTCATTCCGACGGTG 60.350 50.000 14.79 5.92 0.00 4.94
3962 4460 2.249844 AACTTTCATTCCGACGGTGT 57.750 45.000 14.79 0.42 0.00 4.16
4009 4516 1.028868 AGCTTTTCTGGCCGATGCTC 61.029 55.000 0.00 0.00 37.74 4.26
4010 4517 1.028868 GCTTTTCTGGCCGATGCTCT 61.029 55.000 0.00 0.00 37.74 4.09
4011 4518 0.731417 CTTTTCTGGCCGATGCTCTG 59.269 55.000 0.00 0.00 37.74 3.35
4012 4519 0.677731 TTTTCTGGCCGATGCTCTGG 60.678 55.000 0.00 0.00 37.74 3.86
4015 4527 1.817099 CTGGCCGATGCTCTGGAAC 60.817 63.158 0.00 0.00 37.74 3.62
4017 4529 1.153086 GGCCGATGCTCTGGAACAT 60.153 57.895 0.00 0.00 35.78 2.71
4019 4531 1.506493 GCCGATGCTCTGGAACATAG 58.494 55.000 0.00 0.00 35.51 2.23
4035 4547 5.299531 GGAACATAGGTTTCCTGGCTAATTC 59.700 44.000 0.00 0.00 37.36 2.17
4036 4548 4.793201 ACATAGGTTTCCTGGCTAATTCC 58.207 43.478 0.00 0.00 34.61 3.01
4039 4551 2.381961 AGGTTTCCTGGCTAATTCCCAA 59.618 45.455 0.00 0.00 29.57 4.12
4089 4601 1.542472 TCTCACGCGTGATCCAACTAA 59.458 47.619 39.09 16.25 39.13 2.24
4131 4646 7.440556 TGGATTGTGTTACCAAAATTGTCAATG 59.559 33.333 0.00 0.00 28.25 2.82
4134 4649 7.106439 TGTGTTACCAAAATTGTCAATGAGT 57.894 32.000 0.00 0.00 0.00 3.41
4168 4714 3.435105 TTGGTTGTTGTCATCAGTTGC 57.565 42.857 0.00 0.00 0.00 4.17
4187 4733 1.607628 GCCAATCTGTCATGCATCTCC 59.392 52.381 0.00 0.00 0.00 3.71
4188 4734 2.748798 GCCAATCTGTCATGCATCTCCT 60.749 50.000 0.00 0.00 0.00 3.69
4189 4735 3.552875 CCAATCTGTCATGCATCTCCTT 58.447 45.455 0.00 0.00 0.00 3.36
4221 4840 9.965824 CTCAATTTTCACCATTTTTAGTACAGT 57.034 29.630 0.00 0.00 0.00 3.55
4227 4846 6.477253 TCACCATTTTTAGTACAGTATGCCA 58.523 36.000 0.00 0.00 42.53 4.92
4232 4851 9.086336 CCATTTTTAGTACAGTATGCCAAATTG 57.914 33.333 0.00 0.00 42.53 2.32
4236 4855 4.078537 AGTACAGTATGCCAAATTGCACA 58.921 39.130 0.00 0.00 45.48 4.57
4237 4856 3.302365 ACAGTATGCCAAATTGCACAC 57.698 42.857 0.00 0.00 45.48 3.82
4367 5009 8.042944 AGATTTCTCTTTCTTGATCTTCTTGC 57.957 34.615 0.00 0.00 0.00 4.01
4376 5018 5.111989 TCTTGATCTTCTTGCCATCGTTAG 58.888 41.667 0.00 0.00 0.00 2.34
4404 5046 4.518970 TGGAAACGGACTACTACTTACGTT 59.481 41.667 0.00 0.00 45.05 3.99
4565 5212 9.436957 TGAAAAACATAAGGTCTCACTTCTATC 57.563 33.333 0.00 0.00 32.02 2.08
4573 5220 6.672266 AGGTCTCACTTCTATCTGAACAAA 57.328 37.500 0.00 0.00 0.00 2.83
4574 5221 7.067496 AGGTCTCACTTCTATCTGAACAAAA 57.933 36.000 0.00 0.00 0.00 2.44
4599 5249 5.975693 TCCAGTTCTTGTTGAGTTGTTTT 57.024 34.783 0.00 0.00 0.00 2.43
4612 5262 5.177326 TGAGTTGTTTTTCTGCTGCATTTT 58.823 33.333 1.31 0.00 0.00 1.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 1.136774 GCCGATGAAAAGCCCGTTC 59.863 57.895 0.00 0.00 0.00 3.95
29 30 1.432270 GAGAGCCGATGAAAAGCCCG 61.432 60.000 0.00 0.00 0.00 6.13
96 97 2.439338 TGGGTGGTGTGTGTGTGC 60.439 61.111 0.00 0.00 0.00 4.57
115 116 0.615850 AAGAAGAAGGAAGGGAGCGG 59.384 55.000 0.00 0.00 0.00 5.52
154 158 2.795175 AAGTAGTCCGTGTGTGACTG 57.205 50.000 3.30 0.00 42.80 3.51
179 183 8.730680 GCTGAATAAAGTAGTCTTCCATTCAAA 58.269 33.333 13.57 0.00 40.41 2.69
180 184 7.882791 TGCTGAATAAAGTAGTCTTCCATTCAA 59.117 33.333 13.57 4.26 40.41 2.69
181 185 7.334421 GTGCTGAATAAAGTAGTCTTCCATTCA 59.666 37.037 12.72 12.72 39.67 2.57
182 186 7.201652 GGTGCTGAATAAAGTAGTCTTCCATTC 60.202 40.741 0.00 0.00 36.56 2.67
183 187 6.599638 GGTGCTGAATAAAGTAGTCTTCCATT 59.400 38.462 0.00 0.00 32.90 3.16
184 188 6.116126 GGTGCTGAATAAAGTAGTCTTCCAT 58.884 40.000 0.00 0.00 32.90 3.41
185 189 5.012664 TGGTGCTGAATAAAGTAGTCTTCCA 59.987 40.000 0.00 0.00 32.90 3.53
186 190 5.488341 TGGTGCTGAATAAAGTAGTCTTCC 58.512 41.667 0.00 0.00 32.90 3.46
187 191 6.818644 TGATGGTGCTGAATAAAGTAGTCTTC 59.181 38.462 0.00 0.00 32.90 2.87
188 192 6.711277 TGATGGTGCTGAATAAAGTAGTCTT 58.289 36.000 0.00 0.00 35.14 3.01
189 193 6.299805 TGATGGTGCTGAATAAAGTAGTCT 57.700 37.500 0.00 0.00 0.00 3.24
204 208 3.151554 TCTTGGCATGATATGATGGTGC 58.848 45.455 4.25 0.00 35.17 5.01
212 216 3.484407 GGCAACTCTCTTGGCATGATAT 58.516 45.455 3.31 0.00 43.47 1.63
227 231 3.056891 CCATCATTTTACCAACGGCAACT 60.057 43.478 0.00 0.00 0.00 3.16
228 232 3.249917 CCATCATTTTACCAACGGCAAC 58.750 45.455 0.00 0.00 0.00 4.17
229 233 2.894126 ACCATCATTTTACCAACGGCAA 59.106 40.909 0.00 0.00 0.00 4.52
230 234 2.490115 GACCATCATTTTACCAACGGCA 59.510 45.455 0.00 0.00 0.00 5.69
231 235 2.752903 AGACCATCATTTTACCAACGGC 59.247 45.455 0.00 0.00 0.00 5.68
232 236 4.094887 CAGAGACCATCATTTTACCAACGG 59.905 45.833 0.00 0.00 0.00 4.44
233 237 4.094887 CCAGAGACCATCATTTTACCAACG 59.905 45.833 0.00 0.00 0.00 4.10
234 238 5.010282 ACCAGAGACCATCATTTTACCAAC 58.990 41.667 0.00 0.00 0.00 3.77
236 240 4.622933 CGACCAGAGACCATCATTTTACCA 60.623 45.833 0.00 0.00 0.00 3.25
237 241 3.871594 CGACCAGAGACCATCATTTTACC 59.128 47.826 0.00 0.00 0.00 2.85
238 242 3.871594 CCGACCAGAGACCATCATTTTAC 59.128 47.826 0.00 0.00 0.00 2.01
239 243 3.681594 GCCGACCAGAGACCATCATTTTA 60.682 47.826 0.00 0.00 0.00 1.52
241 245 1.407437 GCCGACCAGAGACCATCATTT 60.407 52.381 0.00 0.00 0.00 2.32
242 246 0.179000 GCCGACCAGAGACCATCATT 59.821 55.000 0.00 0.00 0.00 2.57
243 247 0.977627 TGCCGACCAGAGACCATCAT 60.978 55.000 0.00 0.00 0.00 2.45
244 248 1.609210 TGCCGACCAGAGACCATCA 60.609 57.895 0.00 0.00 0.00 3.07
245 249 1.153549 GTGCCGACCAGAGACCATC 60.154 63.158 0.00 0.00 0.00 3.51
246 250 2.660064 GGTGCCGACCAGAGACCAT 61.660 63.158 0.00 0.00 42.59 3.55
247 251 3.311110 GGTGCCGACCAGAGACCA 61.311 66.667 0.00 0.00 42.59 4.02
248 252 2.997897 AGGTGCCGACCAGAGACC 60.998 66.667 0.00 0.00 45.98 3.85
249 253 2.574399 GAGGTGCCGACCAGAGAC 59.426 66.667 0.00 0.00 45.98 3.36
250 254 3.062466 CGAGGTGCCGACCAGAGA 61.062 66.667 0.00 0.00 45.98 3.10
251 255 4.135153 CCGAGGTGCCGACCAGAG 62.135 72.222 0.00 0.00 45.98 3.35
268 272 1.217001 TATCACCGCATGCATTCGAC 58.783 50.000 20.45 0.00 0.00 4.20
273 277 2.754552 ACAAGTTTATCACCGCATGCAT 59.245 40.909 19.57 5.96 0.00 3.96
274 278 2.158559 ACAAGTTTATCACCGCATGCA 58.841 42.857 19.57 0.00 0.00 3.96
275 279 2.161410 TGACAAGTTTATCACCGCATGC 59.839 45.455 7.91 7.91 0.00 4.06
276 280 3.436704 AGTGACAAGTTTATCACCGCATG 59.563 43.478 11.71 0.00 45.28 4.06
277 281 3.436704 CAGTGACAAGTTTATCACCGCAT 59.563 43.478 11.71 0.00 45.28 4.73
278 282 2.805671 CAGTGACAAGTTTATCACCGCA 59.194 45.455 11.71 0.00 45.28 5.69
279 283 2.412847 GCAGTGACAAGTTTATCACCGC 60.413 50.000 11.71 10.18 45.28 5.68
280 284 2.159627 GGCAGTGACAAGTTTATCACCG 59.840 50.000 11.71 5.11 45.28 4.94
282 286 2.159627 CCGGCAGTGACAAGTTTATCAC 59.840 50.000 0.00 8.43 44.64 3.06
283 287 2.224426 ACCGGCAGTGACAAGTTTATCA 60.224 45.455 0.00 0.00 0.00 2.15
284 288 2.415512 GACCGGCAGTGACAAGTTTATC 59.584 50.000 0.00 0.00 0.00 1.75
292 298 2.994995 ATCCGACCGGCAGTGACA 60.995 61.111 0.00 0.00 34.68 3.58
296 302 1.379443 TACAGATCCGACCGGCAGT 60.379 57.895 0.00 2.44 34.68 4.40
304 310 2.891580 GGGCAATCTAGTACAGATCCGA 59.108 50.000 7.86 0.00 43.56 4.55
332 338 1.178534 AACTTGCCATGTCAACGGGG 61.179 55.000 0.00 0.00 0.00 5.73
333 339 0.673437 AAACTTGCCATGTCAACGGG 59.327 50.000 0.00 0.00 0.00 5.28
335 341 2.290367 TGAGAAACTTGCCATGTCAACG 59.710 45.455 0.00 0.00 0.00 4.10
344 350 1.494824 ACGTACGTGAGAAACTTGCC 58.505 50.000 22.14 0.00 0.00 4.52
349 355 4.395581 TGAGAGTACGTACGTGAGAAAC 57.604 45.455 30.25 19.41 0.00 2.78
350 356 5.871524 ACTATGAGAGTACGTACGTGAGAAA 59.128 40.000 30.25 7.51 36.27 2.52
353 359 7.405469 AATACTATGAGAGTACGTACGTGAG 57.595 40.000 30.25 15.03 43.56 3.51
354 360 8.138074 ACTAATACTATGAGAGTACGTACGTGA 58.862 37.037 30.25 11.87 43.56 4.35
360 366 9.790344 AATGGTACTAATACTATGAGAGTACGT 57.210 33.333 0.00 0.00 43.56 3.57
366 372 9.961265 CACGAAAATGGTACTAATACTATGAGA 57.039 33.333 0.00 0.00 33.12 3.27
367 373 9.961265 TCACGAAAATGGTACTAATACTATGAG 57.039 33.333 0.00 0.00 33.12 2.90
371 377 9.961265 CTGATCACGAAAATGGTACTAATACTA 57.039 33.333 0.00 0.00 0.00 1.82
376 382 6.931838 AGACTGATCACGAAAATGGTACTAA 58.068 36.000 0.00 0.00 0.00 2.24
382 388 3.511699 TCGAGACTGATCACGAAAATGG 58.488 45.455 3.88 0.00 43.63 3.16
401 407 1.890041 TGCACCCCGTTTGTTCTCG 60.890 57.895 0.00 0.00 0.00 4.04
461 478 1.271707 CCAGTATTCACGGGGTTTGGT 60.272 52.381 0.00 0.00 36.45 3.67
462 479 1.459450 CCAGTATTCACGGGGTTTGG 58.541 55.000 0.00 0.00 36.45 3.28
463 480 0.808755 GCCAGTATTCACGGGGTTTG 59.191 55.000 0.00 0.00 40.12 2.93
464 481 0.402504 TGCCAGTATTCACGGGGTTT 59.597 50.000 0.00 0.00 40.12 3.27
465 482 0.322187 GTGCCAGTATTCACGGGGTT 60.322 55.000 0.00 0.00 40.12 4.11
466 483 1.298667 GTGCCAGTATTCACGGGGT 59.701 57.895 0.00 0.00 40.12 4.95
471 488 1.588404 CATCGTCGTGCCAGTATTCAC 59.412 52.381 0.00 0.00 0.00 3.18
472 489 1.470805 CCATCGTCGTGCCAGTATTCA 60.471 52.381 0.00 0.00 0.00 2.57
477 494 4.760047 GGCCATCGTCGTGCCAGT 62.760 66.667 15.09 0.00 44.70 4.00
570 595 2.642807 AGGAAGAAACGGAAGGGAATGA 59.357 45.455 0.00 0.00 0.00 2.57
612 640 3.072622 GGGGTCAAGTAACTGAAGGAAGT 59.927 47.826 0.00 0.00 0.00 3.01
614 642 3.323775 AGGGGTCAAGTAACTGAAGGAA 58.676 45.455 0.00 0.00 0.00 3.36
644 672 1.455587 CAAGGTTGGTGGTGCTGGT 60.456 57.895 0.00 0.00 0.00 4.00
645 673 0.179004 TACAAGGTTGGTGGTGCTGG 60.179 55.000 0.00 0.00 0.00 4.85
646 674 1.336755 GTTACAAGGTTGGTGGTGCTG 59.663 52.381 0.00 0.00 0.00 4.41
647 675 1.687563 GTTACAAGGTTGGTGGTGCT 58.312 50.000 0.00 0.00 0.00 4.40
648 676 0.671796 GGTTACAAGGTTGGTGGTGC 59.328 55.000 0.00 0.00 0.00 5.01
649 677 2.060050 TGGTTACAAGGTTGGTGGTG 57.940 50.000 0.00 0.00 0.00 4.17
650 678 2.812613 CGATGGTTACAAGGTTGGTGGT 60.813 50.000 0.00 0.00 0.00 4.16
651 679 1.810151 CGATGGTTACAAGGTTGGTGG 59.190 52.381 0.00 0.00 0.00 4.61
652 680 1.199097 GCGATGGTTACAAGGTTGGTG 59.801 52.381 0.00 0.00 0.00 4.17
653 681 1.530323 GCGATGGTTACAAGGTTGGT 58.470 50.000 0.00 0.00 0.00 3.67
654 682 0.446222 CGCGATGGTTACAAGGTTGG 59.554 55.000 0.00 0.00 0.00 3.77
713 741 1.396594 GGAGAAAGGGAGGGAGGGA 59.603 63.158 0.00 0.00 0.00 4.20
715 743 0.692756 GAGGGAGAAAGGGAGGGAGG 60.693 65.000 0.00 0.00 0.00 4.30
717 745 1.396594 GGAGGGAGAAAGGGAGGGA 59.603 63.158 0.00 0.00 0.00 4.20
718 746 1.694525 GGGAGGGAGAAAGGGAGGG 60.695 68.421 0.00 0.00 0.00 4.30
719 747 0.327964 ATGGGAGGGAGAAAGGGAGG 60.328 60.000 0.00 0.00 0.00 4.30
720 748 2.050918 GTATGGGAGGGAGAAAGGGAG 58.949 57.143 0.00 0.00 0.00 4.30
721 749 1.368203 TGTATGGGAGGGAGAAAGGGA 59.632 52.381 0.00 0.00 0.00 4.20
722 750 1.490910 GTGTATGGGAGGGAGAAAGGG 59.509 57.143 0.00 0.00 0.00 3.95
723 751 2.092914 GTGTGTATGGGAGGGAGAAAGG 60.093 54.545 0.00 0.00 0.00 3.11
724 752 2.571653 TGTGTGTATGGGAGGGAGAAAG 59.428 50.000 0.00 0.00 0.00 2.62
725 753 2.304761 GTGTGTGTATGGGAGGGAGAAA 59.695 50.000 0.00 0.00 0.00 2.52
726 754 1.906574 GTGTGTGTATGGGAGGGAGAA 59.093 52.381 0.00 0.00 0.00 2.87
727 755 1.203250 TGTGTGTGTATGGGAGGGAGA 60.203 52.381 0.00 0.00 0.00 3.71
728 756 1.066143 GTGTGTGTGTATGGGAGGGAG 60.066 57.143 0.00 0.00 0.00 4.30
729 757 0.981183 GTGTGTGTGTATGGGAGGGA 59.019 55.000 0.00 0.00 0.00 4.20
730 758 0.690192 TGTGTGTGTGTATGGGAGGG 59.310 55.000 0.00 0.00 0.00 4.30
731 759 1.071542 TGTGTGTGTGTGTATGGGAGG 59.928 52.381 0.00 0.00 0.00 4.30
732 760 2.143122 GTGTGTGTGTGTGTATGGGAG 58.857 52.381 0.00 0.00 0.00 4.30
733 761 1.202710 GGTGTGTGTGTGTGTATGGGA 60.203 52.381 0.00 0.00 0.00 4.37
734 762 1.234821 GGTGTGTGTGTGTGTATGGG 58.765 55.000 0.00 0.00 0.00 4.00
735 763 1.960417 TGGTGTGTGTGTGTGTATGG 58.040 50.000 0.00 0.00 0.00 2.74
742 770 1.064505 CAAGAGCTTGGTGTGTGTGTG 59.935 52.381 2.30 0.00 36.95 3.82
746 774 0.029834 GCACAAGAGCTTGGTGTGTG 59.970 55.000 20.07 15.26 43.65 3.82
917 966 3.295093 TCTCCCTCTGCTTCTGTATCTG 58.705 50.000 0.00 0.00 0.00 2.90
967 1033 2.343426 CCTTCTTTCTTGGGCCCGC 61.343 63.158 19.37 0.00 0.00 6.13
985 1059 2.123982 CATGCTCAGGCTTCCCCC 60.124 66.667 0.00 0.00 39.59 5.40
986 1060 2.123982 CCATGCTCAGGCTTCCCC 60.124 66.667 0.00 0.00 39.59 4.81
987 1061 1.153005 CTCCATGCTCAGGCTTCCC 60.153 63.158 0.00 0.00 39.59 3.97
988 1062 1.153005 CCTCCATGCTCAGGCTTCC 60.153 63.158 0.00 0.00 39.59 3.46
989 1063 0.747283 CACCTCCATGCTCAGGCTTC 60.747 60.000 3.99 0.00 39.59 3.86
990 1064 1.302285 CACCTCCATGCTCAGGCTT 59.698 57.895 3.99 0.00 39.59 4.35
991 1065 2.996395 CACCTCCATGCTCAGGCT 59.004 61.111 3.99 0.00 39.59 4.58
992 1066 2.827642 GCACCTCCATGCTCAGGC 60.828 66.667 3.99 0.00 42.62 4.85
1036 1110 1.742761 ACAAGAAGTAGCGCATGCAT 58.257 45.000 19.57 8.14 46.23 3.96
1045 1119 0.517316 GCGGCACCAACAAGAAGTAG 59.483 55.000 0.00 0.00 0.00 2.57
1047 1121 2.193536 GGCGGCACCAACAAGAAGT 61.194 57.895 3.07 0.00 38.86 3.01
1062 1136 1.442520 CGTCAATGCAACAAGGGCG 60.443 57.895 0.00 0.00 0.00 6.13
1245 1336 2.754552 AGCGCAAATATGGAAGAAGCAA 59.245 40.909 11.47 0.00 0.00 3.91
1258 1349 6.509418 TTGAAGGAACTAATTAGCGCAAAT 57.491 33.333 11.47 0.00 38.49 2.32
1259 1350 5.619086 GCTTGAAGGAACTAATTAGCGCAAA 60.619 40.000 11.47 0.00 38.49 3.68
1282 1373 4.934602 ACAAAGTGATTAGAAGCAGAGAGC 59.065 41.667 0.00 0.00 46.19 4.09
1310 1401 1.677942 ACCGCTTTCGTTTTAACCCA 58.322 45.000 0.00 0.00 0.00 4.51
1312 1403 3.614159 AGAACCGCTTTCGTTTTAACC 57.386 42.857 0.00 0.00 39.47 2.85
1345 1436 3.541632 ACGGAAAGGCGATGAATGTAAT 58.458 40.909 0.00 0.00 0.00 1.89
1360 1451 2.906691 TTCCAACGGAACTACGGAAA 57.093 45.000 0.00 0.00 36.71 3.13
1384 1475 1.002468 CAACAACTGCTCCCACGAAAG 60.002 52.381 0.00 0.00 0.00 2.62
1422 1513 6.861065 ACCATACGGATGTTGTAATCAATC 57.139 37.500 6.92 0.00 34.33 2.67
1425 1516 6.474140 ACTACCATACGGATGTTGTAATCA 57.526 37.500 6.92 0.00 35.59 2.57
1490 1585 0.594796 GCAAAGCCAACCGACACTTG 60.595 55.000 0.00 0.00 0.00 3.16
1502 1597 1.844687 ATCTCCCAGAAAGCAAAGCC 58.155 50.000 0.00 0.00 0.00 4.35
1544 1639 3.809905 AGGAACGGCTATCATTTTCCTC 58.190 45.455 0.00 0.00 41.93 3.71
1546 1641 4.398044 TGAAAGGAACGGCTATCATTTTCC 59.602 41.667 1.61 0.00 36.71 3.13
1548 1643 4.157840 GGTGAAAGGAACGGCTATCATTTT 59.842 41.667 1.61 0.00 31.62 1.82
1552 1647 1.065709 GGGTGAAAGGAACGGCTATCA 60.066 52.381 0.00 0.00 0.00 2.15
1553 1648 1.664873 GGGTGAAAGGAACGGCTATC 58.335 55.000 0.00 0.00 0.00 2.08
1554 1649 0.255033 GGGGTGAAAGGAACGGCTAT 59.745 55.000 0.00 0.00 0.00 2.97
1555 1650 1.128809 TGGGGTGAAAGGAACGGCTA 61.129 55.000 0.00 0.00 0.00 3.93
1602 1698 6.628461 CACTACCGTTTTCGTTTTCGTTTTAT 59.372 34.615 0.00 0.00 44.46 1.40
1604 1700 4.787591 CACTACCGTTTTCGTTTTCGTTTT 59.212 37.500 0.00 0.00 44.46 2.43
1608 1704 2.284952 ACCACTACCGTTTTCGTTTTCG 59.715 45.455 0.00 0.00 45.64 3.46
1642 1747 0.232303 GCAGAGACGGAAACACAACG 59.768 55.000 0.00 0.00 0.00 4.10
1643 1748 0.232303 CGCAGAGACGGAAACACAAC 59.768 55.000 0.00 0.00 0.00 3.32
1644 1749 0.179094 ACGCAGAGACGGAAACACAA 60.179 50.000 0.00 0.00 37.37 3.33
1645 1750 0.179094 AACGCAGAGACGGAAACACA 60.179 50.000 0.00 0.00 37.37 3.72
1646 1751 0.935196 AAACGCAGAGACGGAAACAC 59.065 50.000 0.00 0.00 37.37 3.32
1647 1752 0.934496 CAAACGCAGAGACGGAAACA 59.066 50.000 0.00 0.00 37.37 2.83
1648 1753 0.384353 GCAAACGCAGAGACGGAAAC 60.384 55.000 0.00 0.00 37.37 2.78
1649 1754 1.827315 CGCAAACGCAGAGACGGAAA 61.827 55.000 0.00 0.00 37.37 3.13
1650 1755 2.307309 CGCAAACGCAGAGACGGAA 61.307 57.895 0.00 0.00 37.37 4.30
1651 1756 2.733218 CGCAAACGCAGAGACGGA 60.733 61.111 0.00 0.00 37.37 4.69
1652 1757 3.000080 GACGCAAACGCAGAGACGG 62.000 63.158 0.00 0.00 45.53 4.79
1653 1758 2.203140 CTGACGCAAACGCAGAGACG 62.203 60.000 0.00 0.00 45.53 4.18
1654 1759 1.488957 CTGACGCAAACGCAGAGAC 59.511 57.895 0.00 0.00 45.53 3.36
1655 1760 1.664649 CCTGACGCAAACGCAGAGA 60.665 57.895 10.11 0.00 45.53 3.10
1656 1761 1.891060 GACCTGACGCAAACGCAGAG 61.891 60.000 10.11 5.00 45.53 3.35
1662 1767 0.318784 ACTCGAGACCTGACGCAAAC 60.319 55.000 21.68 0.00 0.00 2.93
1727 1836 0.453793 AGAGATCAACGCACGGAGAG 59.546 55.000 0.00 0.00 0.00 3.20
1733 1843 2.349886 GGACATGAAGAGATCAACGCAC 59.650 50.000 0.00 0.00 42.54 5.34
1734 1844 2.621338 GGACATGAAGAGATCAACGCA 58.379 47.619 0.00 0.00 42.54 5.24
1736 1846 2.854777 GACGGACATGAAGAGATCAACG 59.145 50.000 0.00 0.00 42.54 4.10
1751 1861 0.166814 GCATTTGTGAGCTGACGGAC 59.833 55.000 0.00 0.00 0.00 4.79
1762 1874 3.951306 TCTTGACGAAACTGCATTTGTG 58.049 40.909 0.00 0.00 0.00 3.33
1792 1940 4.454504 GGACGGAAAGTTTCTTTGCTGATA 59.545 41.667 15.05 0.00 0.00 2.15
1850 1998 3.279434 CCACTTTCTACTGGCATTACCC 58.721 50.000 0.00 0.00 37.83 3.69
1996 2208 2.930040 CAGACGTGACAATAATCGGCTT 59.070 45.455 0.00 0.00 39.74 4.35
2310 2529 2.931325 CCATAACACATTGGCACATTGC 59.069 45.455 0.00 0.00 42.72 3.56
2327 2546 4.033009 AGTGATCATCAGACACCACCATA 58.967 43.478 0.00 0.00 35.47 2.74
2329 2548 2.027837 CAGTGATCATCAGACACCACCA 60.028 50.000 0.00 0.00 35.47 4.17
2330 2549 2.625737 CAGTGATCATCAGACACCACC 58.374 52.381 0.00 0.00 35.47 4.61
2331 2550 2.027745 ACCAGTGATCATCAGACACCAC 60.028 50.000 0.00 0.00 35.47 4.16
2332 2551 2.027837 CACCAGTGATCATCAGACACCA 60.028 50.000 0.00 0.00 35.47 4.17
2333 2552 2.027745 ACACCAGTGATCATCAGACACC 60.028 50.000 4.48 0.00 35.47 4.16
2334 2553 3.325293 ACACCAGTGATCATCAGACAC 57.675 47.619 4.48 0.00 35.15 3.67
2361 2580 1.347097 CGCTGTGGATCTGACACGTG 61.347 60.000 15.48 15.48 41.64 4.49
2362 2581 1.080501 CGCTGTGGATCTGACACGT 60.081 57.895 0.00 0.00 41.64 4.49
2363 2582 1.807165 CCGCTGTGGATCTGACACG 60.807 63.158 0.00 3.72 41.64 4.49
2364 2583 2.103042 GCCGCTGTGGATCTGACAC 61.103 63.158 12.29 0.00 42.00 3.67
2365 2584 2.265739 GCCGCTGTGGATCTGACA 59.734 61.111 12.29 0.00 42.00 3.58
2484 2715 1.812922 GCAGTCCAGCATCAGGTCG 60.813 63.158 0.00 0.00 0.00 4.79
2525 2756 4.008933 GCAGCGAGTCCACCACCT 62.009 66.667 0.00 0.00 0.00 4.00
2572 2803 1.949847 ATGCCCTCCGTCTCGAAGTG 61.950 60.000 0.00 0.00 0.00 3.16
2573 2804 1.668101 GATGCCCTCCGTCTCGAAGT 61.668 60.000 0.00 0.00 0.00 3.01
3069 3300 3.649277 CTGCTCCACCGTCCCGAAG 62.649 68.421 0.00 0.00 0.00 3.79
3165 3396 1.748122 GTCGACGGTCCAGGAGCTA 60.748 63.158 16.76 0.00 0.00 3.32
3481 3723 0.179062 CAAATCCTCTCCGGCCAGAG 60.179 60.000 9.96 9.96 39.89 3.35
3489 3731 1.636003 ACCTGGGTTCAAATCCTCTCC 59.364 52.381 0.00 0.00 0.00 3.71
3505 3747 1.991121 TATAGTAGTCCCGCCACCTG 58.009 55.000 0.00 0.00 0.00 4.00
3533 3818 7.671495 TCTGAATCATTTCTCAAACAATCGA 57.329 32.000 0.00 0.00 32.78 3.59
3542 3827 8.762481 AATGATCCATTCTGAATCATTTCTCA 57.238 30.769 9.88 4.87 38.39 3.27
3571 3857 1.986575 GCAAGAACGCAGGATGAGCC 61.987 60.000 0.00 0.00 40.66 4.70
3573 3859 1.129998 CAAGCAAGAACGCAGGATGAG 59.870 52.381 0.00 0.00 43.55 2.90
3577 3863 0.884704 GGACAAGCAAGAACGCAGGA 60.885 55.000 0.00 0.00 0.00 3.86
3579 3865 0.236711 CTGGACAAGCAAGAACGCAG 59.763 55.000 0.00 0.00 0.00 5.18
3583 3869 4.836125 TTGATTCTGGACAAGCAAGAAC 57.164 40.909 0.00 0.00 33.01 3.01
3584 3870 5.850557 TTTTGATTCTGGACAAGCAAGAA 57.149 34.783 0.00 0.00 33.41 2.52
3585 3871 5.850557 TTTTTGATTCTGGACAAGCAAGA 57.149 34.783 0.00 0.00 33.41 3.02
3605 3891 9.574516 AAGAGGATACATAACACAAGAGTTTTT 57.425 29.630 0.00 0.00 41.41 1.94
3606 3892 9.003658 CAAGAGGATACATAACACAAGAGTTTT 57.996 33.333 0.00 0.00 41.41 2.43
3607 3893 8.375506 TCAAGAGGATACATAACACAAGAGTTT 58.624 33.333 0.00 0.00 41.41 2.66
3608 3894 7.907389 TCAAGAGGATACATAACACAAGAGTT 58.093 34.615 0.00 0.00 41.41 3.01
3609 3895 7.482169 TCAAGAGGATACATAACACAAGAGT 57.518 36.000 0.00 0.00 41.41 3.24
3610 3896 7.042187 GCATCAAGAGGATACATAACACAAGAG 60.042 40.741 0.00 0.00 41.41 2.85
3611 3897 6.763135 GCATCAAGAGGATACATAACACAAGA 59.237 38.462 0.00 0.00 41.41 3.02
3612 3898 6.765036 AGCATCAAGAGGATACATAACACAAG 59.235 38.462 0.00 0.00 41.41 3.16
3613 3899 6.653020 AGCATCAAGAGGATACATAACACAA 58.347 36.000 0.00 0.00 41.41 3.33
3614 3900 6.239217 AGCATCAAGAGGATACATAACACA 57.761 37.500 0.00 0.00 41.41 3.72
3615 3901 6.763135 TGAAGCATCAAGAGGATACATAACAC 59.237 38.462 0.00 0.00 33.95 3.32
3616 3902 6.888105 TGAAGCATCAAGAGGATACATAACA 58.112 36.000 0.00 0.00 33.95 2.41
3617 3903 7.976135 ATGAAGCATCAAGAGGATACATAAC 57.024 36.000 0.00 0.00 39.49 1.89
3618 3904 8.985315 AAATGAAGCATCAAGAGGATACATAA 57.015 30.769 0.00 0.00 39.49 1.90
3619 3905 8.212995 TGAAATGAAGCATCAAGAGGATACATA 58.787 33.333 0.00 0.00 39.49 2.29
3620 3906 7.058525 TGAAATGAAGCATCAAGAGGATACAT 58.941 34.615 0.00 0.00 39.49 2.29
3621 3907 6.417258 TGAAATGAAGCATCAAGAGGATACA 58.583 36.000 0.00 0.00 39.49 2.29
3622 3908 6.932356 TGAAATGAAGCATCAAGAGGATAC 57.068 37.500 0.00 0.00 39.49 2.24
3635 3921 7.959109 GTGAATTTTATTGGCTTGAAATGAAGC 59.041 33.333 0.00 0.00 46.49 3.86
3636 3922 9.211485 AGTGAATTTTATTGGCTTGAAATGAAG 57.789 29.630 0.00 0.00 0.00 3.02
3637 3923 9.206870 GAGTGAATTTTATTGGCTTGAAATGAA 57.793 29.630 0.00 0.00 0.00 2.57
3638 3924 8.587608 AGAGTGAATTTTATTGGCTTGAAATGA 58.412 29.630 0.00 0.00 0.00 2.57
3639 3925 8.767478 AGAGTGAATTTTATTGGCTTGAAATG 57.233 30.769 0.00 0.00 0.00 2.32
3640 3926 8.810041 AGAGAGTGAATTTTATTGGCTTGAAAT 58.190 29.630 0.00 0.00 0.00 2.17
3641 3927 8.084073 CAGAGAGTGAATTTTATTGGCTTGAAA 58.916 33.333 0.00 0.00 0.00 2.69
3642 3928 7.231317 ACAGAGAGTGAATTTTATTGGCTTGAA 59.769 33.333 0.00 0.00 0.00 2.69
3643 3929 6.716628 ACAGAGAGTGAATTTTATTGGCTTGA 59.283 34.615 0.00 0.00 0.00 3.02
3644 3930 6.917533 ACAGAGAGTGAATTTTATTGGCTTG 58.082 36.000 0.00 0.00 0.00 4.01
3674 3960 9.856488 CATGATCTTGAGACATTTTGATTCTTT 57.144 29.630 2.43 0.00 0.00 2.52
3675 3961 8.467598 CCATGATCTTGAGACATTTTGATTCTT 58.532 33.333 10.07 0.00 0.00 2.52
3676 3962 7.832685 TCCATGATCTTGAGACATTTTGATTCT 59.167 33.333 10.07 0.00 0.00 2.40
3677 3963 7.993101 TCCATGATCTTGAGACATTTTGATTC 58.007 34.615 10.07 0.00 0.00 2.52
3678 3964 7.949690 TCCATGATCTTGAGACATTTTGATT 57.050 32.000 10.07 0.00 0.00 2.57
3679 3965 7.832685 TCTTCCATGATCTTGAGACATTTTGAT 59.167 33.333 10.07 0.00 0.00 2.57
3680 3966 7.170277 TCTTCCATGATCTTGAGACATTTTGA 58.830 34.615 10.07 0.00 0.00 2.69
3689 3975 8.333908 CGTCTTTAATTCTTCCATGATCTTGAG 58.666 37.037 10.07 1.17 0.00 3.02
3700 3986 6.737254 TTGGTCATCGTCTTTAATTCTTCC 57.263 37.500 0.00 0.00 0.00 3.46
3701 3987 8.237267 ACAATTGGTCATCGTCTTTAATTCTTC 58.763 33.333 10.83 0.00 0.00 2.87
3702 3988 8.023128 CACAATTGGTCATCGTCTTTAATTCTT 58.977 33.333 10.83 0.00 0.00 2.52
3703 3989 7.390440 TCACAATTGGTCATCGTCTTTAATTCT 59.610 33.333 10.83 0.00 0.00 2.40
3704 3990 7.481798 GTCACAATTGGTCATCGTCTTTAATTC 59.518 37.037 10.83 0.00 0.00 2.17
3709 3995 3.186409 CGTCACAATTGGTCATCGTCTTT 59.814 43.478 10.83 0.00 0.00 2.52
3710 3996 2.736721 CGTCACAATTGGTCATCGTCTT 59.263 45.455 10.83 0.00 0.00 3.01
3712 3998 2.333926 TCGTCACAATTGGTCATCGTC 58.666 47.619 10.83 0.00 0.00 4.20
3713 3999 2.448926 TCGTCACAATTGGTCATCGT 57.551 45.000 10.83 0.00 0.00 3.73
3714 4000 5.290885 TCTTTATCGTCACAATTGGTCATCG 59.709 40.000 10.83 7.31 0.00 3.84
3715 4001 6.662414 TCTTTATCGTCACAATTGGTCATC 57.338 37.500 10.83 0.00 0.00 2.92
3716 4002 6.823182 TCATCTTTATCGTCACAATTGGTCAT 59.177 34.615 10.83 0.00 0.00 3.06
3720 4006 5.959527 CGTTCATCTTTATCGTCACAATTGG 59.040 40.000 10.83 0.00 0.00 3.16
3721 4007 6.761117 TCGTTCATCTTTATCGTCACAATTG 58.239 36.000 3.24 3.24 0.00 2.32
3723 4009 6.018751 CCATCGTTCATCTTTATCGTCACAAT 60.019 38.462 0.00 0.00 0.00 2.71
3729 4015 4.621991 CCTCCATCGTTCATCTTTATCGT 58.378 43.478 0.00 0.00 0.00 3.73
3737 4023 0.107214 TTGGGCCTCCATCGTTCATC 60.107 55.000 4.53 0.00 43.63 2.92
3740 4026 0.107214 TGATTGGGCCTCCATCGTTC 60.107 55.000 4.53 0.00 43.63 3.95
3742 4028 0.179009 CATGATTGGGCCTCCATCGT 60.179 55.000 4.53 2.42 43.63 3.73
3743 4029 0.109153 TCATGATTGGGCCTCCATCG 59.891 55.000 4.53 1.71 43.63 3.84
3744 4030 1.144503 AGTCATGATTGGGCCTCCATC 59.855 52.381 4.53 4.52 43.63 3.51
3746 4032 1.891933 TAGTCATGATTGGGCCTCCA 58.108 50.000 4.53 0.00 42.25 3.86
3747 4033 2.173569 AGTTAGTCATGATTGGGCCTCC 59.826 50.000 4.53 0.00 0.00 4.30
3748 4034 3.567478 AGTTAGTCATGATTGGGCCTC 57.433 47.619 4.53 0.00 0.00 4.70
3749 4035 4.322057 AAAGTTAGTCATGATTGGGCCT 57.678 40.909 4.53 0.00 0.00 5.19
3769 4055 4.753107 AGAACAAAGCGGTAGATCGAAAAA 59.247 37.500 0.00 0.00 0.00 1.94
3774 4260 1.324736 GCAGAACAAAGCGGTAGATCG 59.675 52.381 0.00 0.00 0.00 3.69
3790 4276 2.574018 CCGACAGGTGACCAGCAGA 61.574 63.158 3.63 0.00 0.00 4.26
3807 4293 3.426568 GCTGGTGCGCTTGAGACC 61.427 66.667 9.73 8.09 0.00 3.85
3816 4302 2.420628 TTTGAATGAAAGCTGGTGCG 57.579 45.000 0.00 0.00 45.42 5.34
3823 4309 3.786048 CGAACGGCTATTTGAATGAAAGC 59.214 43.478 0.00 0.00 0.00 3.51
3841 4328 0.584054 GCGTGCATGAACGATCGAAC 60.584 55.000 30.43 15.01 46.49 3.95
3843 4330 1.413008 CTGCGTGCATGAACGATCGA 61.413 55.000 30.43 8.79 46.49 3.59
3846 4333 2.753966 GCCTGCGTGCATGAACGAT 61.754 57.895 30.43 0.00 46.49 3.73
3847 4334 3.422303 GCCTGCGTGCATGAACGA 61.422 61.111 30.43 13.60 46.49 3.85
3849 4336 0.521291 TTAAGCCTGCGTGCATGAAC 59.479 50.000 10.93 0.00 0.00 3.18
3851 4338 1.016627 GATTAAGCCTGCGTGCATGA 58.983 50.000 10.93 0.00 0.00 3.07
3854 4341 1.401552 GAATGATTAAGCCTGCGTGCA 59.598 47.619 0.00 0.00 0.00 4.57
3859 4346 1.680338 ACGGGAATGATTAAGCCTGC 58.320 50.000 0.00 0.00 0.00 4.85
3860 4347 4.399303 AGAAAACGGGAATGATTAAGCCTG 59.601 41.667 0.00 0.00 0.00 4.85
3862 4349 4.398044 TCAGAAAACGGGAATGATTAAGCC 59.602 41.667 0.00 0.00 0.00 4.35
3863 4350 5.560966 TCAGAAAACGGGAATGATTAAGC 57.439 39.130 0.00 0.00 0.00 3.09
3893 4388 1.212455 GAAAACCGTGCTTTTGGCCG 61.212 55.000 0.00 0.00 40.92 6.13
3903 4401 0.796312 CATCCGTCCAGAAAACCGTG 59.204 55.000 0.00 0.00 0.00 4.94
3904 4402 0.321298 CCATCCGTCCAGAAAACCGT 60.321 55.000 0.00 0.00 0.00 4.83
3905 4403 0.321298 ACCATCCGTCCAGAAAACCG 60.321 55.000 0.00 0.00 0.00 4.44
3908 4406 2.105821 ACTGAACCATCCGTCCAGAAAA 59.894 45.455 0.00 0.00 0.00 2.29
3913 4411 0.895530 GAGACTGAACCATCCGTCCA 59.104 55.000 0.00 0.00 39.76 4.02
3914 4412 0.895530 TGAGACTGAACCATCCGTCC 59.104 55.000 0.00 0.00 39.76 4.79
3915 4413 2.028930 ACTTGAGACTGAACCATCCGTC 60.029 50.000 0.00 0.00 39.36 4.79
3916 4414 1.971357 ACTTGAGACTGAACCATCCGT 59.029 47.619 0.00 0.00 0.00 4.69
3920 4418 2.498167 GTGCACTTGAGACTGAACCAT 58.502 47.619 10.32 0.00 0.00 3.55
3921 4419 1.475034 GGTGCACTTGAGACTGAACCA 60.475 52.381 17.98 0.00 0.00 3.67
3935 4433 2.034053 TCGGAATGAAAGTTTGGTGCAC 59.966 45.455 8.80 8.80 0.00 4.57
3937 4435 2.661594 GTCGGAATGAAAGTTTGGTGC 58.338 47.619 0.00 0.00 0.00 5.01
3938 4436 2.350388 CCGTCGGAATGAAAGTTTGGTG 60.350 50.000 4.91 0.00 0.00 4.17
3939 4437 1.877443 CCGTCGGAATGAAAGTTTGGT 59.123 47.619 4.91 0.00 0.00 3.67
3940 4438 1.877443 ACCGTCGGAATGAAAGTTTGG 59.123 47.619 20.51 0.00 0.00 3.28
3941 4439 2.289547 ACACCGTCGGAATGAAAGTTTG 59.710 45.455 20.51 3.84 0.00 2.93
3942 4440 2.546789 GACACCGTCGGAATGAAAGTTT 59.453 45.455 20.51 0.00 0.00 2.66
3943 4441 2.140717 GACACCGTCGGAATGAAAGTT 58.859 47.619 20.51 0.00 0.00 2.66
3944 4442 1.792006 GACACCGTCGGAATGAAAGT 58.208 50.000 20.51 4.34 0.00 2.66
3964 4462 2.095718 AGCTACTTGCAACGCTTTTAGC 60.096 45.455 0.00 1.56 45.94 3.09
3965 4463 3.186409 TGAGCTACTTGCAACGCTTTTAG 59.814 43.478 12.70 0.00 45.94 1.85
3966 4464 3.059188 GTGAGCTACTTGCAACGCTTTTA 60.059 43.478 12.70 3.24 45.94 1.52
4001 4508 1.414181 ACCTATGTTCCAGAGCATCGG 59.586 52.381 11.82 11.82 42.67 4.18
4002 4509 2.898729 ACCTATGTTCCAGAGCATCG 57.101 50.000 0.00 0.00 42.67 3.84
4006 4513 3.274288 CAGGAAACCTATGTTCCAGAGC 58.726 50.000 6.01 0.00 32.15 4.09
4009 4516 2.025887 AGCCAGGAAACCTATGTTCCAG 60.026 50.000 6.01 0.00 32.15 3.86
4010 4517 1.992557 AGCCAGGAAACCTATGTTCCA 59.007 47.619 6.01 0.00 32.15 3.53
4011 4518 2.808906 AGCCAGGAAACCTATGTTCC 57.191 50.000 0.00 0.00 32.15 3.62
4012 4519 5.299531 GGAATTAGCCAGGAAACCTATGTTC 59.700 44.000 0.00 0.00 32.15 3.18
4015 4527 4.145052 GGGAATTAGCCAGGAAACCTATG 58.855 47.826 0.00 0.00 29.64 2.23
4017 4529 3.194620 TGGGAATTAGCCAGGAAACCTA 58.805 45.455 0.00 0.00 29.64 3.08
4019 4531 2.525105 TGGGAATTAGCCAGGAAACC 57.475 50.000 0.00 0.00 0.00 3.27
4064 4576 4.148825 ATCACGCGTGAGAGGGGC 62.149 66.667 40.50 0.00 43.61 5.80
4089 4601 7.170965 ACACAATCCACAAAGAATGATACTCT 58.829 34.615 0.00 0.00 0.00 3.24
4164 4710 2.426024 AGATGCATGACAGATTGGCAAC 59.574 45.455 2.46 0.00 39.86 4.17
4168 4714 3.210232 AGGAGATGCATGACAGATTGG 57.790 47.619 2.46 0.00 0.00 3.16
4221 4840 4.078537 ACTAGTGTGTGCAATTTGGCATA 58.921 39.130 0.00 0.00 46.92 3.14
4227 4846 5.764686 TCATCAGAACTAGTGTGTGCAATTT 59.235 36.000 0.00 0.00 0.00 1.82
4232 4851 5.180117 ACATTTCATCAGAACTAGTGTGTGC 59.820 40.000 0.00 0.00 32.39 4.57
4236 4855 6.652481 CCTTGACATTTCATCAGAACTAGTGT 59.348 38.462 0.00 0.00 32.39 3.55
4237 4856 6.875726 TCCTTGACATTTCATCAGAACTAGTG 59.124 38.462 0.00 0.00 32.39 2.74
4300 4941 3.693085 CAGTACATGCATCAAGAAAGCCT 59.307 43.478 0.00 0.00 0.00 4.58
4367 5009 2.607635 CGTTTCCATGACCTAACGATGG 59.392 50.000 12.89 0.00 44.32 3.51
4376 5018 3.446516 AGTAGTAGTCCGTTTCCATGACC 59.553 47.826 0.00 0.00 0.00 4.02
4404 5046 5.118990 GGCAGCTTCAGTGTTAAGATATCA 58.881 41.667 5.32 0.00 0.00 2.15
4468 5110 5.356751 GCAACATCTATTTGGTGGTGATGTA 59.643 40.000 0.32 0.00 44.44 2.29
4514 5161 9.241317 CAGATCCAATAGCAACATGTATTTTTC 57.759 33.333 0.00 0.00 0.00 2.29
4565 5212 7.545265 TCAACAAGAACTGGAAATTTTGTTCAG 59.455 33.333 22.55 18.60 40.62 3.02
4573 5220 6.530019 ACAACTCAACAAGAACTGGAAATT 57.470 33.333 0.00 0.00 0.00 1.82
4574 5221 6.530019 AACAACTCAACAAGAACTGGAAAT 57.470 33.333 0.00 0.00 0.00 2.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.