Multiple sequence alignment - TraesCS2B01G442800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)



BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G442800 chr2B 100.000 5526 0 0 1 5526 636108370 636113895 0.000000e+00 10205
1 TraesCS2B01G442800 chr2A 91.629 2007 125 21 3540 5526 678163054 678165037 0.000000e+00 2736
2 TraesCS2B01G442800 chr2A 84.044 2112 180 75 1 2022 678158650 678160694 0.000000e+00 1888
3 TraesCS2B01G442800 chr2A 85.841 678 66 11 2195 2864 678161449 678162104 0.000000e+00 693
4 TraesCS2B01G442800 chr2A 80.668 419 48 14 2770 3181 678162104 678162496 1.510000e-75 294
5 TraesCS2B01G442800 chr2A 86.224 196 11 3 2019 2199 678161069 678161263 1.210000e-46 198
6 TraesCS2B01G442800 chr2D 90.973 2005 114 30 3540 5526 534929044 534930999 0.000000e+00 2638
7 TraesCS2B01G442800 chr2D 85.072 1668 128 42 598 2199 534923839 534925451 0.000000e+00 1589
8 TraesCS2B01G442800 chr2D 87.759 580 57 7 2194 2764 534925555 534926129 0.000000e+00 665
9 TraesCS2B01G442800 chr2D 84.158 606 37 23 23 598 534923231 534923807 2.930000e-147 532
10 TraesCS2B01G442800 chr2D 84.530 181 12 7 3190 3355 534928357 534928536 1.230000e-36 165


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G442800 chr2B 636108370 636113895 5525 False 10205.0 10205 100.0000 1 5526 1 chr2B.!!$F1 5525
1 TraesCS2B01G442800 chr2A 678158650 678165037 6387 False 1161.8 2736 85.6812 1 5526 5 chr2A.!!$F1 5525
2 TraesCS2B01G442800 chr2D 534923231 534930999 7768 False 1117.8 2638 86.4984 23 5526 5 chr2D.!!$F1 5503


AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
787 880 0.034670 AAGCCTTGTCCCATCAGCTC 60.035 55.0 0.00 0.0 0.00 4.09 F
791 884 0.179936 CTTGTCCCATCAGCTCTCCC 59.820 60.0 0.00 0.0 0.00 4.30 F
1201 1317 0.385390 CAAGGTGCAGTGTGTTTCCC 59.615 55.0 0.00 0.0 0.00 3.97 F
2559 3322 0.178992 CCTGCAGGTTTCAGGGAACA 60.179 55.0 25.53 0.0 45.62 3.18 F
3764 6868 0.035881 TGCAGACTTGGAGCTTCAGG 59.964 55.0 1.80 1.8 0.00 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1756 1893 0.476771 TTCCACTTTCACCCCCAGTC 59.523 55.000 0.0 0.0 0.00 3.51 R
1822 1976 1.680338 GAACCAAGACTGCAACAGGT 58.320 50.000 0.0 0.0 35.51 4.00 R
3118 4209 1.412710 GGTGCATCAGGGAACTATCGA 59.587 52.381 0.0 0.0 40.21 3.59 R
4360 7464 0.034896 TCCCTTTGTTCGAGTCCTGC 59.965 55.000 0.0 0.0 0.00 4.85 R
5297 8428 0.035152 CTGGTAGCCTCACAATGCCA 60.035 55.000 0.0 0.0 0.00 4.92 R


All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
69 84 0.883153 ATGCGCATGCTCTTGTTCAA 59.117 45.000 24.69 0.00 43.34 2.69
71 86 0.455633 GCGCATGCTCTTGTTCAAGG 60.456 55.000 17.13 0.00 38.39 3.61
72 87 0.877071 CGCATGCTCTTGTTCAAGGT 59.123 50.000 17.13 0.00 0.00 3.50
74 89 2.094894 CGCATGCTCTTGTTCAAGGTAG 59.905 50.000 17.13 5.16 0.00 3.18
75 90 2.159462 GCATGCTCTTGTTCAAGGTAGC 60.159 50.000 11.37 14.94 0.00 3.58
76 91 2.928801 TGCTCTTGTTCAAGGTAGCA 57.071 45.000 18.40 18.40 37.62 3.49
77 92 3.423539 TGCTCTTGTTCAAGGTAGCAT 57.576 42.857 18.40 0.00 35.20 3.79
78 93 3.076621 TGCTCTTGTTCAAGGTAGCATG 58.923 45.455 18.40 0.00 35.20 4.06
79 94 2.159462 GCTCTTGTTCAAGGTAGCATGC 60.159 50.000 10.51 10.51 0.00 4.06
80 95 2.076100 TCTTGTTCAAGGTAGCATGCG 58.924 47.619 13.01 0.00 0.00 4.73
81 96 2.076100 CTTGTTCAAGGTAGCATGCGA 58.924 47.619 13.01 3.59 0.00 5.10
82 97 2.177394 TGTTCAAGGTAGCATGCGAA 57.823 45.000 13.01 5.68 0.00 4.70
83 98 2.499197 TGTTCAAGGTAGCATGCGAAA 58.501 42.857 13.01 0.00 0.00 3.46
84 99 2.881513 TGTTCAAGGTAGCATGCGAAAA 59.118 40.909 13.01 0.54 0.00 2.29
112 127 1.150827 GATTTTTGGTGCTTGCTGCC 58.849 50.000 0.00 0.00 42.00 4.85
135 150 0.323725 CTGCTTGGCTGGGTGGTAAT 60.324 55.000 0.00 0.00 0.00 1.89
136 151 0.995803 TGCTTGGCTGGGTGGTAATA 59.004 50.000 0.00 0.00 0.00 0.98
137 152 1.568597 TGCTTGGCTGGGTGGTAATAT 59.431 47.619 0.00 0.00 0.00 1.28
182 197 1.710816 GATCTGGATTCCGAGACCCT 58.289 55.000 6.91 0.00 0.00 4.34
183 198 1.342819 GATCTGGATTCCGAGACCCTG 59.657 57.143 6.91 0.00 0.00 4.45
184 199 1.144936 CTGGATTCCGAGACCCTGC 59.855 63.158 0.00 0.00 0.00 4.85
204 219 1.261619 CTGCAATATCCTCGGCGTTTC 59.738 52.381 6.85 0.00 0.00 2.78
220 239 4.572389 GGCGTTTCTGTGTGATTATGATCT 59.428 41.667 0.00 0.00 33.28 2.75
233 252 8.611757 TGTGATTATGATCTGTAAATCGTTTGG 58.388 33.333 0.00 0.00 32.23 3.28
246 265 6.796705 AAATCGTTTGGTTCTCTCGTTAAT 57.203 33.333 0.00 0.00 0.00 1.40
268 287 0.620556 ATCCACAGAAACGCCATCCT 59.379 50.000 0.00 0.00 0.00 3.24
269 288 0.400213 TCCACAGAAACGCCATCCTT 59.600 50.000 0.00 0.00 0.00 3.36
270 289 1.626321 TCCACAGAAACGCCATCCTTA 59.374 47.619 0.00 0.00 0.00 2.69
351 373 2.372688 CCCTCCCTCCCTGCCTAA 59.627 66.667 0.00 0.00 0.00 2.69
363 385 1.401905 CCTGCCTAATTTTCTCGTGGC 59.598 52.381 0.00 0.00 40.62 5.01
386 408 3.882888 CAGAGCTTTGTGTTGGAACCTTA 59.117 43.478 0.00 0.00 0.00 2.69
396 418 4.459337 GTGTTGGAACCTTAAGCTGCTTAT 59.541 41.667 21.64 7.88 0.00 1.73
404 426 7.717436 GGAACCTTAAGCTGCTTATTAATCTCT 59.283 37.037 21.64 3.19 0.00 3.10
427 452 0.393132 GCAAGAGTTCCTAGGTGGGC 60.393 60.000 9.08 0.92 36.20 5.36
431 456 0.253327 GAGTTCCTAGGTGGGCTTGG 59.747 60.000 9.08 0.00 36.20 3.61
467 513 2.958204 ATGTGTGTGCGCGCTCAAG 61.958 57.895 34.13 0.00 33.24 3.02
483 529 5.527582 GCGCTCAAGAAGGGATTTTATTCTA 59.472 40.000 0.00 0.00 40.30 2.10
593 645 5.010314 ACCATACTCGGCATCTTACGAAATA 59.990 40.000 0.00 0.00 38.79 1.40
640 730 1.806542 CTTGAGTTTGTGCGGCTACAT 59.193 47.619 0.00 0.00 0.00 2.29
642 732 1.001974 TGAGTTTGTGCGGCTACATCT 59.998 47.619 0.00 6.12 0.00 2.90
678 768 6.900194 AGCTGGGATTAGCAAGTTCTATTAA 58.100 36.000 0.00 0.00 46.07 1.40
710 800 2.559231 GAGGTATCAGGATTCGGGAGTC 59.441 54.545 0.00 0.00 0.00 3.36
743 833 4.037208 AGGTTCAGTTCATGTTCTGCAAAG 59.963 41.667 12.52 0.00 0.00 2.77
787 880 0.034670 AAGCCTTGTCCCATCAGCTC 60.035 55.000 0.00 0.00 0.00 4.09
791 884 0.179936 CTTGTCCCATCAGCTCTCCC 59.820 60.000 0.00 0.00 0.00 4.30
809 902 1.178276 CCTACAGACGGCTTCAGACT 58.822 55.000 0.00 0.00 0.00 3.24
824 917 1.129251 CAGACTGGCAGCGTATTGTTG 59.871 52.381 15.89 0.00 0.00 3.33
827 920 2.739913 GACTGGCAGCGTATTGTTGTTA 59.260 45.455 15.89 0.00 0.00 2.41
828 921 3.343617 ACTGGCAGCGTATTGTTGTTAT 58.656 40.909 15.89 0.00 0.00 1.89
829 922 3.756434 ACTGGCAGCGTATTGTTGTTATT 59.244 39.130 15.89 0.00 0.00 1.40
830 923 4.217550 ACTGGCAGCGTATTGTTGTTATTT 59.782 37.500 15.89 0.00 0.00 1.40
832 925 4.216472 TGGCAGCGTATTGTTGTTATTTCA 59.784 37.500 0.00 0.00 0.00 2.69
833 926 4.793216 GGCAGCGTATTGTTGTTATTTCAG 59.207 41.667 0.00 0.00 0.00 3.02
855 948 6.712095 TCAGAAAGTACATGAATGCTTGACTT 59.288 34.615 0.00 0.00 0.00 3.01
856 949 7.229306 TCAGAAAGTACATGAATGCTTGACTTT 59.771 33.333 0.00 12.74 35.24 2.66
857 950 7.325338 CAGAAAGTACATGAATGCTTGACTTTG 59.675 37.037 15.58 5.98 34.18 2.77
858 951 6.882610 AAGTACATGAATGCTTGACTTTGA 57.117 33.333 0.00 0.00 0.00 2.69
859 952 6.246420 AGTACATGAATGCTTGACTTTGAC 57.754 37.500 0.00 0.00 0.00 3.18
860 953 6.000219 AGTACATGAATGCTTGACTTTGACT 59.000 36.000 0.00 0.00 0.00 3.41
861 954 5.117355 ACATGAATGCTTGACTTTGACTG 57.883 39.130 0.00 0.00 0.00 3.51
862 955 3.631145 TGAATGCTTGACTTTGACTGC 57.369 42.857 0.00 0.00 0.00 4.40
863 956 3.216800 TGAATGCTTGACTTTGACTGCT 58.783 40.909 0.00 0.00 0.00 4.24
864 957 4.388485 TGAATGCTTGACTTTGACTGCTA 58.612 39.130 0.00 0.00 0.00 3.49
865 958 4.214119 TGAATGCTTGACTTTGACTGCTAC 59.786 41.667 0.00 0.00 0.00 3.58
866 959 3.475566 TGCTTGACTTTGACTGCTACT 57.524 42.857 0.00 0.00 0.00 2.57
867 960 4.600692 TGCTTGACTTTGACTGCTACTA 57.399 40.909 0.00 0.00 0.00 1.82
868 961 4.307432 TGCTTGACTTTGACTGCTACTAC 58.693 43.478 0.00 0.00 0.00 2.73
869 962 4.202212 TGCTTGACTTTGACTGCTACTACA 60.202 41.667 0.00 0.00 0.00 2.74
870 963 4.750098 GCTTGACTTTGACTGCTACTACAA 59.250 41.667 0.00 0.00 0.00 2.41
871 964 5.107298 GCTTGACTTTGACTGCTACTACAAG 60.107 44.000 0.00 0.00 35.60 3.16
872 965 4.307432 TGACTTTGACTGCTACTACAAGC 58.693 43.478 0.00 0.00 43.08 4.01
873 966 3.665190 ACTTTGACTGCTACTACAAGCC 58.335 45.455 0.00 0.00 42.05 4.35
878 971 1.909302 ACTGCTACTACAAGCCCATGT 59.091 47.619 0.00 0.00 42.05 3.21
890 983 1.615392 AGCCCATGTTTCTTTCACAGC 59.385 47.619 0.00 0.00 0.00 4.40
901 994 0.599558 TTTCACAGCAAGCTCCATGC 59.400 50.000 0.36 0.36 44.15 4.06
916 1009 3.857052 TCCATGCGATTTACGTTCTTCT 58.143 40.909 0.00 0.00 44.60 2.85
960 1053 6.698766 CCTTGCATGATTTAGGATGTTTTAGC 59.301 38.462 0.00 0.00 0.00 3.09
986 1087 1.748122 GATCCTGTGGCCTGCACTG 60.748 63.158 3.32 0.00 0.00 3.66
1008 1113 3.207265 CCAAACGGGATCATGGTATGA 57.793 47.619 0.00 0.00 44.55 2.15
1009 1114 2.878406 CCAAACGGGATCATGGTATGAC 59.122 50.000 0.00 0.00 43.01 3.06
1010 1115 3.540617 CAAACGGGATCATGGTATGACA 58.459 45.455 0.00 0.00 43.01 3.58
1027 1132 7.012327 TGGTATGACAACTTCAAACTCTTTCTG 59.988 37.037 0.00 0.00 37.92 3.02
1028 1133 5.235305 TGACAACTTCAAACTCTTTCTGC 57.765 39.130 0.00 0.00 0.00 4.26
1034 1139 5.189180 ACTTCAAACTCTTTCTGCAGTTCT 58.811 37.500 14.67 0.00 31.38 3.01
1089 1205 1.471119 TGCCTACCTAGGTTGAGACG 58.529 55.000 22.11 6.36 45.42 4.18
1129 1245 0.683179 GGGGTTACCTGATGGTTGGC 60.683 60.000 0.00 0.00 46.05 4.52
1153 1269 3.897141 AAGAGTACAGGCCTAGAAAGC 57.103 47.619 3.98 0.00 0.00 3.51
1160 1276 2.203084 GCCTAGAAAGCCTCGGCC 60.203 66.667 3.92 0.00 45.28 6.13
1165 1281 0.691078 TAGAAAGCCTCGGCCTGGAT 60.691 55.000 14.86 6.23 43.17 3.41
1171 1287 1.152440 CCTCGGCCTGGATCTAGGT 60.152 63.158 24.55 0.00 40.11 3.08
1172 1288 0.760945 CCTCGGCCTGGATCTAGGTT 60.761 60.000 24.55 0.00 40.11 3.50
1201 1317 0.385390 CAAGGTGCAGTGTGTTTCCC 59.615 55.000 0.00 0.00 0.00 3.97
1210 1327 3.131400 GCAGTGTGTTTCCCTTGGTTAAA 59.869 43.478 0.00 0.00 0.00 1.52
1212 1329 5.528870 CAGTGTGTTTCCCTTGGTTAAATC 58.471 41.667 0.00 0.00 0.00 2.17
1213 1330 4.277423 AGTGTGTTTCCCTTGGTTAAATCG 59.723 41.667 0.00 0.00 0.00 3.34
1214 1331 4.037089 GTGTGTTTCCCTTGGTTAAATCGT 59.963 41.667 0.00 0.00 0.00 3.73
1215 1332 4.036971 TGTGTTTCCCTTGGTTAAATCGTG 59.963 41.667 0.00 0.00 0.00 4.35
1261 1380 8.417106 TCCAGCTTTTACTCTCTAGTTATGATG 58.583 37.037 0.00 0.00 37.15 3.07
1268 1387 6.782082 ACTCTCTAGTTATGATGCTGTGAA 57.218 37.500 0.00 0.00 29.00 3.18
1276 1395 3.719268 ATGATGCTGTGAACCCTGTTA 57.281 42.857 0.00 0.00 0.00 2.41
1299 1418 0.780637 TCCTGCCACATTTTACCCCA 59.219 50.000 0.00 0.00 0.00 4.96
1310 1429 6.350110 CCACATTTTACCCCATTAGTTGTGAG 60.350 42.308 0.00 0.00 35.20 3.51
1311 1430 6.208599 CACATTTTACCCCATTAGTTGTGAGT 59.791 38.462 0.00 0.00 35.20 3.41
1312 1431 6.780522 ACATTTTACCCCATTAGTTGTGAGTT 59.219 34.615 0.00 0.00 0.00 3.01
1313 1432 6.642707 TTTTACCCCATTAGTTGTGAGTTG 57.357 37.500 0.00 0.00 0.00 3.16
1314 1433 3.876309 ACCCCATTAGTTGTGAGTTGT 57.124 42.857 0.00 0.00 0.00 3.32
1315 1434 3.486383 ACCCCATTAGTTGTGAGTTGTG 58.514 45.455 0.00 0.00 0.00 3.33
1316 1435 3.137544 ACCCCATTAGTTGTGAGTTGTGA 59.862 43.478 0.00 0.00 0.00 3.58
1329 1448 1.385038 GTTGTGACATTGCGACAACG 58.615 50.000 12.97 0.00 39.91 4.10
1332 1451 1.004398 TGTGACATTGCGACAACGTTC 60.004 47.619 0.00 0.00 41.98 3.95
1342 1461 1.334599 CGACAACGTTCACCCCATTTG 60.335 52.381 0.00 0.00 34.56 2.32
1343 1462 1.000717 GACAACGTTCACCCCATTTGG 60.001 52.381 0.00 0.00 0.00 3.28
1376 1502 7.107639 TGTATCAAACGGATGAGTTAGATCA 57.892 36.000 0.00 0.00 36.72 2.92
1398 1524 4.813161 CACTAGGACATGCTATGGAAACTG 59.187 45.833 0.00 0.00 33.60 3.16
1401 1527 2.357009 GGACATGCTATGGAAACTGCAG 59.643 50.000 13.48 13.48 38.87 4.41
1435 1562 7.046652 GGATGACATGATAGCTTACTGCATAT 58.953 38.462 0.00 0.00 45.94 1.78
1472 1600 2.093128 ACTCGTTAGGGGCATACCAAAG 60.093 50.000 0.00 0.00 42.91 2.77
1497 1626 8.400947 AGTATGTCGAAATCCTCAAATTTCATG 58.599 33.333 0.00 0.00 43.00 3.07
1561 1690 2.046314 TTTCGGCTAGCTGCACCC 60.046 61.111 19.27 0.00 45.15 4.61
1573 1708 3.741476 GCACCCCGCTGCTTCTTG 61.741 66.667 0.00 0.00 37.77 3.02
1580 1715 1.718757 CCGCTGCTTCTTGGCCATAC 61.719 60.000 6.09 0.00 0.00 2.39
1595 1730 1.604693 CCATACCACGAATACGGCCTC 60.605 57.143 0.00 0.00 44.46 4.70
1598 1733 1.883084 CCACGAATACGGCCTCAGC 60.883 63.158 0.00 0.00 44.46 4.26
1658 1793 2.123589 TCCACCTTGTCAGTTTGAGGA 58.876 47.619 0.00 0.00 33.47 3.71
1693 1830 4.219115 TGGGGTAAAAAGCATCACAAGAA 58.781 39.130 0.00 0.00 0.00 2.52
1694 1831 4.651503 TGGGGTAAAAAGCATCACAAGAAA 59.348 37.500 0.00 0.00 0.00 2.52
1756 1893 5.107220 GGGTAAGTATTGTCACAAAGTCGTG 60.107 44.000 0.00 0.00 38.29 4.35
1777 1925 1.203050 ACTGGGGGTGAAAGTGGAATG 60.203 52.381 0.00 0.00 0.00 2.67
1778 1926 0.541764 TGGGGGTGAAAGTGGAATGC 60.542 55.000 0.00 0.00 0.00 3.56
1797 1945 8.801299 TGGAATGCACTCAAATAATTTAACTCA 58.199 29.630 0.00 0.00 0.00 3.41
1822 1976 7.922811 CAGTGTGTTTATGCTATCACTCTGATA 59.077 37.037 16.04 0.00 46.19 2.15
1909 2066 9.696917 AATGATTTGATAGAAAACAACAACTCC 57.303 29.630 0.00 0.00 0.00 3.85
1910 2067 7.359595 TGATTTGATAGAAAACAACAACTCCG 58.640 34.615 0.00 0.00 0.00 4.63
1982 2141 4.212716 ACTAACCTTTCCCTTTTCACACC 58.787 43.478 0.00 0.00 0.00 4.16
2059 2601 9.407380 TGATCTAGGTTGTATATTGCATTGTTT 57.593 29.630 0.00 0.00 0.00 2.83
2147 2703 5.473504 ACCTTGTTCTTGTCATGGTATGAAC 59.526 40.000 15.50 15.50 41.69 3.18
2165 2721 9.474920 GGTATGAACATGAAATTGAGTTGAAAA 57.525 29.630 0.00 0.00 0.00 2.29
2238 2995 9.950680 CTTAATGAGTTGTAAGTGATTGTGTTT 57.049 29.630 0.00 0.00 0.00 2.83
2316 3079 3.974871 TTAGGCGTTTTTCCACAAGAC 57.025 42.857 0.00 0.00 0.00 3.01
2319 3082 0.379316 GCGTTTTTCCACAAGACGGT 59.621 50.000 0.00 0.00 34.55 4.83
2320 3083 1.598601 GCGTTTTTCCACAAGACGGTA 59.401 47.619 0.00 0.00 34.55 4.02
2321 3084 2.600556 GCGTTTTTCCACAAGACGGTAC 60.601 50.000 0.00 0.00 34.55 3.34
2326 3089 4.877378 TTTCCACAAGACGGTACTATGT 57.123 40.909 0.00 0.00 0.00 2.29
2347 3110 9.357652 CTATGTCCAATTTATGTTTGACTTTGG 57.642 33.333 0.00 0.00 34.75 3.28
2348 3111 7.118496 TGTCCAATTTATGTTTGACTTTGGT 57.882 32.000 0.00 0.00 34.97 3.67
2489 3252 5.654650 AGAAGTTCACCACTATCTCGAATCT 59.345 40.000 5.50 0.00 32.94 2.40
2505 3268 6.998673 TCTCGAATCTCAAGATACCAGTGATA 59.001 38.462 0.00 0.00 33.73 2.15
2516 3279 5.480422 AGATACCAGTGATAGTGTTGTGACA 59.520 40.000 0.00 0.00 0.00 3.58
2528 3291 4.963276 TGTTGTGACACCAAAGAAGAAG 57.037 40.909 2.45 0.00 0.00 2.85
2559 3322 0.178992 CCTGCAGGTTTCAGGGAACA 60.179 55.000 25.53 0.00 45.62 3.18
2576 3339 5.126061 AGGGAACAAATCTCAACATGTATGC 59.874 40.000 0.00 0.00 0.00 3.14
2596 3359 4.603131 TGCTCCTTCTCTTATGGCATTTT 58.397 39.130 4.78 0.00 0.00 1.82
2615 3378 7.751793 GGCATTTTCTTATTTGAATTTTGCCTG 59.248 33.333 0.00 0.00 39.62 4.85
2701 3467 3.813166 AGTGTTTTCATTTCGACGGATGT 59.187 39.130 10.48 0.00 0.00 3.06
2718 3485 2.214376 TGTTGCAGATAAAGGGTGGG 57.786 50.000 0.00 0.00 0.00 4.61
2727 3494 0.251165 TAAAGGGTGGGTGCTTGAGC 60.251 55.000 0.00 0.00 42.50 4.26
2737 3504 2.171003 GGTGCTTGAGCTTGGGTTTAT 58.829 47.619 4.44 0.00 42.66 1.40
2752 3519 8.239998 GCTTGGGTTTATCTAATTATGCATCTC 58.760 37.037 0.19 0.00 0.00 2.75
2767 3534 5.079689 TGCATCTCAAAAACATCATGCAT 57.920 34.783 0.00 0.00 41.22 3.96
2789 3777 6.585702 GCATGTGCATCAAGTTATAACACAAA 59.414 34.615 17.65 0.99 39.69 2.83
2796 3784 7.432252 GCATCAAGTTATAACACAAATGCCTAC 59.568 37.037 21.97 6.80 32.06 3.18
2797 3785 7.987750 TCAAGTTATAACACAAATGCCTACA 57.012 32.000 17.65 0.00 0.00 2.74
2801 3789 9.471084 AAGTTATAACACAAATGCCTACAAAAC 57.529 29.630 17.65 0.00 0.00 2.43
2826 3815 7.177216 ACATCATACAGAAACATGACCAAATGT 59.823 33.333 0.00 0.00 42.62 2.71
2835 3824 2.897271 TGACCAAATGTACCCTGCAT 57.103 45.000 0.00 0.00 0.00 3.96
2841 3830 4.531732 ACCAAATGTACCCTGCATGAAAAT 59.468 37.500 0.00 0.00 0.00 1.82
2888 3975 6.964908 TGAACAGTGTAATAACAACCACATG 58.035 36.000 0.00 0.00 37.36 3.21
2946 4035 6.147492 TGCATTAAATTTTCAGGTGTTCATGC 59.853 34.615 0.00 0.00 34.13 4.06
2953 4042 6.603237 TTTTCAGGTGTTCATGCTATATCG 57.397 37.500 0.00 0.00 0.00 2.92
2959 4048 4.991056 GGTGTTCATGCTATATCGTCATGT 59.009 41.667 9.93 0.00 38.82 3.21
3018 4109 8.700439 ATTTAAGTAAACCCTAAACTCAAGCA 57.300 30.769 0.00 0.00 0.00 3.91
3019 4110 8.522542 TTTAAGTAAACCCTAAACTCAAGCAA 57.477 30.769 0.00 0.00 0.00 3.91
3020 4111 6.387041 AAGTAAACCCTAAACTCAAGCAAC 57.613 37.500 0.00 0.00 0.00 4.17
3021 4112 5.442391 AGTAAACCCTAAACTCAAGCAACA 58.558 37.500 0.00 0.00 0.00 3.33
3022 4113 4.918810 AAACCCTAAACTCAAGCAACAG 57.081 40.909 0.00 0.00 0.00 3.16
3023 4114 2.230660 ACCCTAAACTCAAGCAACAGC 58.769 47.619 0.00 0.00 0.00 4.40
3024 4115 2.158608 ACCCTAAACTCAAGCAACAGCT 60.159 45.455 0.00 0.00 41.23 4.24
3026 4117 3.319122 CCCTAAACTCAAGCAACAGCTTT 59.681 43.478 0.00 0.00 45.93 3.51
3027 4118 4.293415 CCTAAACTCAAGCAACAGCTTTG 58.707 43.478 0.00 0.00 45.93 2.77
3028 4119 2.214387 AACTCAAGCAACAGCTTTGC 57.786 45.000 19.56 19.56 45.93 3.68
3029 4120 1.105457 ACTCAAGCAACAGCTTTGCA 58.895 45.000 25.24 11.56 45.93 4.08
3030 4121 1.684983 ACTCAAGCAACAGCTTTGCAT 59.315 42.857 25.24 16.37 45.93 3.96
3031 4122 2.288030 ACTCAAGCAACAGCTTTGCATC 60.288 45.455 25.24 6.54 45.93 3.91
3040 4131 3.841643 ACAGCTTTGCATCTACATTTGC 58.158 40.909 0.00 0.00 39.33 3.68
3044 4135 5.407387 CAGCTTTGCATCTACATTTGCTTTT 59.593 36.000 0.00 0.00 39.60 2.27
3051 4142 5.349543 GCATCTACATTTGCTTTTCCCTTTG 59.650 40.000 0.00 0.00 35.95 2.77
3053 4144 3.557228 ACATTTGCTTTTCCCTTTGCA 57.443 38.095 0.00 0.00 0.00 4.08
3070 4161 7.501225 TCCCTTTGCAGGTAGTATTAAATTAGC 59.499 37.037 0.00 0.00 38.79 3.09
3093 4184 6.844696 CTCTAGGATAGCGCAAAAATGTTA 57.155 37.500 11.47 0.00 38.99 2.41
3098 4189 6.265577 AGGATAGCGCAAAAATGTTATGTTC 58.734 36.000 11.47 0.00 0.00 3.18
3111 4202 7.603963 AATGTTATGTTCGCTAATGTACACA 57.396 32.000 0.00 0.00 0.00 3.72
3114 4205 6.091577 TGTTATGTTCGCTAATGTACACAAGG 59.908 38.462 0.00 0.00 0.00 3.61
3118 4209 6.167685 TGTTCGCTAATGTACACAAGGTAAT 58.832 36.000 0.00 0.00 32.72 1.89
3120 4211 5.038683 TCGCTAATGTACACAAGGTAATCG 58.961 41.667 0.00 0.00 32.72 3.34
3124 4215 7.060748 CGCTAATGTACACAAGGTAATCGATAG 59.939 40.741 0.00 0.00 32.72 2.08
3127 5730 8.644318 AATGTACACAAGGTAATCGATAGTTC 57.356 34.615 0.00 0.00 32.72 3.01
3133 5736 5.602978 ACAAGGTAATCGATAGTTCCCTGAT 59.397 40.000 0.00 0.00 37.40 2.90
3150 5753 4.142315 CCCTGATGCACCTACAAAATTCTG 60.142 45.833 0.00 0.00 0.00 3.02
3177 5781 1.175347 TGCTAAAACATGCCGTGCCA 61.175 50.000 0.00 0.00 0.00 4.92
3182 5786 0.678395 AAACATGCCGTGCCAATTGA 59.322 45.000 7.12 0.00 0.00 2.57
3184 5789 1.761449 ACATGCCGTGCCAATTGATA 58.239 45.000 7.12 0.00 0.00 2.15
3187 5792 3.888323 ACATGCCGTGCCAATTGATATAA 59.112 39.130 7.12 0.00 0.00 0.98
3188 5793 4.523943 ACATGCCGTGCCAATTGATATAAT 59.476 37.500 7.12 0.00 0.00 1.28
3189 5794 5.709631 ACATGCCGTGCCAATTGATATAATA 59.290 36.000 7.12 0.00 0.00 0.98
3190 5795 5.621197 TGCCGTGCCAATTGATATAATAC 57.379 39.130 7.12 0.00 0.00 1.89
3191 5796 5.312895 TGCCGTGCCAATTGATATAATACT 58.687 37.500 7.12 0.00 0.00 2.12
3192 5797 5.767665 TGCCGTGCCAATTGATATAATACTT 59.232 36.000 7.12 0.00 0.00 2.24
3193 5798 6.072728 TGCCGTGCCAATTGATATAATACTTC 60.073 38.462 7.12 0.00 0.00 3.01
3195 5800 7.624344 GCCGTGCCAATTGATATAATACTTCTC 60.624 40.741 7.12 0.00 0.00 2.87
3196 5801 7.148407 CCGTGCCAATTGATATAATACTTCTCC 60.148 40.741 7.12 0.00 0.00 3.71
3197 5802 7.411912 CGTGCCAATTGATATAATACTTCTCCG 60.412 40.741 7.12 0.00 0.00 4.63
3199 5804 8.154203 TGCCAATTGATATAATACTTCTCCGAA 58.846 33.333 7.12 0.00 0.00 4.30
3225 5962 2.424793 AGGGAAGGGGTGTGAAAAGTA 58.575 47.619 0.00 0.00 0.00 2.24
3234 5971 3.373130 GGGTGTGAAAAGTACTAATCGCC 59.627 47.826 15.07 11.06 0.00 5.54
3235 5972 3.998341 GGTGTGAAAAGTACTAATCGCCA 59.002 43.478 15.07 7.17 0.00 5.69
3242 5986 8.448615 GTGAAAAGTACTAATCGCCAAACTAAT 58.551 33.333 0.00 0.00 0.00 1.73
3243 5987 9.005777 TGAAAAGTACTAATCGCCAAACTAATT 57.994 29.630 0.00 0.00 0.00 1.40
3244 5988 9.274065 GAAAAGTACTAATCGCCAAACTAATTG 57.726 33.333 0.00 0.00 38.84 2.32
3245 5989 6.359480 AGTACTAATCGCCAAACTAATTGC 57.641 37.500 0.00 0.00 37.73 3.56
3274 6023 3.025978 TGGATTGTCAAATCTGGATGGC 58.974 45.455 0.00 0.00 41.74 4.40
3279 6028 3.237746 TGTCAAATCTGGATGGCCAAAA 58.762 40.909 10.96 0.00 45.41 2.44
3282 6031 5.127519 TGTCAAATCTGGATGGCCAAAATAG 59.872 40.000 10.96 6.42 45.41 1.73
3355 6105 2.212812 TGCATGTAATGGGTTGCAGA 57.787 45.000 0.00 0.00 46.86 4.26
3356 6106 2.737544 TGCATGTAATGGGTTGCAGAT 58.262 42.857 0.00 0.00 46.86 2.90
3358 6108 2.428171 GCATGTAATGGGTTGCAGATGT 59.572 45.455 0.00 0.00 46.86 3.06
3359 6109 3.735820 GCATGTAATGGGTTGCAGATGTG 60.736 47.826 0.00 0.00 46.86 3.21
3360 6110 3.431673 TGTAATGGGTTGCAGATGTGA 57.568 42.857 0.00 0.00 0.00 3.58
3361 6111 3.760738 TGTAATGGGTTGCAGATGTGAA 58.239 40.909 0.00 0.00 0.00 3.18
3362 6112 4.343231 TGTAATGGGTTGCAGATGTGAAT 58.657 39.130 0.00 0.00 0.00 2.57
3363 6113 4.771577 TGTAATGGGTTGCAGATGTGAATT 59.228 37.500 0.00 0.00 0.00 2.17
3364 6114 4.895668 AATGGGTTGCAGATGTGAATTT 57.104 36.364 0.00 0.00 0.00 1.82
3367 6117 3.896888 TGGGTTGCAGATGTGAATTTCTT 59.103 39.130 0.00 0.00 0.00 2.52
3368 6118 4.022068 TGGGTTGCAGATGTGAATTTCTTC 60.022 41.667 0.00 0.00 0.00 2.87
3369 6119 4.022068 GGGTTGCAGATGTGAATTTCTTCA 60.022 41.667 0.00 0.00 39.07 3.02
3370 6120 5.337009 GGGTTGCAGATGTGAATTTCTTCAT 60.337 40.000 0.00 3.20 43.08 2.57
3371 6121 6.161381 GGTTGCAGATGTGAATTTCTTCATT 58.839 36.000 0.00 0.00 43.08 2.57
3372 6122 6.647895 GGTTGCAGATGTGAATTTCTTCATTT 59.352 34.615 0.00 0.00 43.08 2.32
3373 6123 7.148689 GGTTGCAGATGTGAATTTCTTCATTTC 60.149 37.037 0.00 0.00 43.08 2.17
3374 6124 6.983984 TGCAGATGTGAATTTCTTCATTTCA 58.016 32.000 0.00 0.00 43.08 2.69
3375 6125 6.864685 TGCAGATGTGAATTTCTTCATTTCAC 59.135 34.615 7.82 7.82 45.94 3.18
3379 6129 3.920412 GTGAATTTCTTCATTTCACGCCC 59.080 43.478 0.00 0.00 43.08 6.13
3380 6130 3.826157 TGAATTTCTTCATTTCACGCCCT 59.174 39.130 0.00 0.00 36.46 5.19
3381 6131 4.280677 TGAATTTCTTCATTTCACGCCCTT 59.719 37.500 0.00 0.00 36.46 3.95
3382 6132 3.915437 TTTCTTCATTTCACGCCCTTC 57.085 42.857 0.00 0.00 0.00 3.46
3386 6136 3.513912 TCTTCATTTCACGCCCTTCTCTA 59.486 43.478 0.00 0.00 0.00 2.43
3430 6180 2.200067 TCTTGTTGCAATGCGTTTTGG 58.800 42.857 0.59 0.00 0.00 3.28
3431 6181 1.932511 CTTGTTGCAATGCGTTTTGGT 59.067 42.857 0.59 0.00 0.00 3.67
3432 6182 2.871182 TGTTGCAATGCGTTTTGGTA 57.129 40.000 0.59 0.00 0.00 3.25
3433 6183 3.377346 TGTTGCAATGCGTTTTGGTAT 57.623 38.095 0.59 0.00 0.00 2.73
3434 6184 3.722147 TGTTGCAATGCGTTTTGGTATT 58.278 36.364 0.59 0.00 0.00 1.89
3435 6185 3.492383 TGTTGCAATGCGTTTTGGTATTG 59.508 39.130 0.59 0.00 41.24 1.90
3437 6187 2.297315 TGCAATGCGTTTTGGTATTGGA 59.703 40.909 0.00 0.46 39.48 3.53
3438 6188 3.243873 TGCAATGCGTTTTGGTATTGGAA 60.244 39.130 0.00 0.00 37.39 3.53
3440 6190 4.302455 CAATGCGTTTTGGTATTGGAACA 58.698 39.130 0.00 0.00 36.67 3.18
3441 6191 3.357166 TGCGTTTTGGTATTGGAACAC 57.643 42.857 0.00 0.00 39.29 3.32
3442 6192 2.688446 TGCGTTTTGGTATTGGAACACA 59.312 40.909 0.00 0.00 39.29 3.72
3443 6193 3.130516 TGCGTTTTGGTATTGGAACACAA 59.869 39.130 0.00 0.00 44.54 3.33
3479 6536 8.877864 ACATCTGTGAATTACCAATTTCCTAA 57.122 30.769 0.00 0.00 0.00 2.69
3491 6548 6.543735 ACCAATTTCCTAATATCCTACAGGC 58.456 40.000 0.00 0.00 34.44 4.85
3513 6570 0.970640 TACCACACTTTCGCAGCCTA 59.029 50.000 0.00 0.00 0.00 3.93
3521 6578 6.092748 CACACTTTCGCAGCCTATTAAATTT 58.907 36.000 0.00 0.00 0.00 1.82
3548 6651 7.309560 CCCATATTGACCTACACGTCATATACA 60.310 40.741 0.00 0.00 42.20 2.29
3561 6664 4.024893 CGTCATATACATGAAAGTGGTGCC 60.025 45.833 0.00 0.00 42.79 5.01
3581 6684 1.841302 AAACTGCCGATGCCCTCAGA 61.841 55.000 0.00 0.00 36.33 3.27
3596 6699 6.349300 TGCCCTCAGATTTCTATTGTACTTC 58.651 40.000 0.00 0.00 0.00 3.01
3597 6700 6.070251 TGCCCTCAGATTTCTATTGTACTTCA 60.070 38.462 0.00 0.00 0.00 3.02
3645 6749 4.782019 TGTTGCTACCCATGTTTCATTC 57.218 40.909 0.00 0.00 0.00 2.67
3687 6791 8.305046 TGCACCATCTAATAGCCTTTATTTTT 57.695 30.769 0.00 0.00 0.00 1.94
3722 6826 2.281345 GGCCATCATCAGAGCCCG 60.281 66.667 0.00 0.00 39.60 6.13
3748 6852 3.260297 TCCAAAGGGAGGCTTGCA 58.740 55.556 0.00 0.00 38.64 4.08
3751 6855 1.246737 CCAAAGGGAGGCTTGCAGAC 61.247 60.000 0.00 0.00 35.59 3.51
3755 6859 1.676967 GGGAGGCTTGCAGACTTGG 60.677 63.158 0.00 0.00 30.20 3.61
3764 6868 0.035881 TGCAGACTTGGAGCTTCAGG 59.964 55.000 1.80 1.80 0.00 3.86
3773 6877 0.250901 GGAGCTTCAGGTGGCAAGAA 60.251 55.000 0.00 0.00 0.00 2.52
3778 6882 2.287849 GCTTCAGGTGGCAAGAAAGAAC 60.288 50.000 0.00 0.00 0.00 3.01
3807 6911 2.097142 GTCTGAACCATGAATCTGCTGC 59.903 50.000 0.00 0.00 0.00 5.25
3826 6930 4.083110 GCTGCAAGAGAAGAAGCAAATGTA 60.083 41.667 0.00 0.00 36.44 2.29
3844 6948 0.545787 TAGAGCCGAAACCCAAGGGA 60.546 55.000 13.15 0.00 38.96 4.20
3907 7011 2.226200 TGTTCGATCGTCACCTCGTTTA 59.774 45.455 15.94 0.00 36.33 2.01
3913 7017 0.433492 CGTCACCTCGTTTAACTGCG 59.567 55.000 0.00 0.00 0.00 5.18
3923 7027 2.032377 CGTTTAACTGCGCTGAAAAGGA 60.032 45.455 21.92 0.00 0.00 3.36
3926 7030 0.307760 AACTGCGCTGAAAAGGAACG 59.692 50.000 21.92 0.00 0.00 3.95
3934 7038 1.807142 CTGAAAAGGAACGAGGAAGCC 59.193 52.381 0.00 0.00 0.00 4.35
3938 7042 3.713826 AAAGGAACGAGGAAGCCAATA 57.286 42.857 0.00 0.00 0.00 1.90
3943 7047 4.163458 AGGAACGAGGAAGCCAATAATGTA 59.837 41.667 0.00 0.00 0.00 2.29
3947 7051 4.652421 ACGAGGAAGCCAATAATGTACCTA 59.348 41.667 0.00 0.00 0.00 3.08
3949 7053 5.010719 CGAGGAAGCCAATAATGTACCTAGA 59.989 44.000 0.00 0.00 0.00 2.43
3952 7056 6.042208 AGGAAGCCAATAATGTACCTAGAGAC 59.958 42.308 0.00 0.00 0.00 3.36
3953 7057 5.810080 AGCCAATAATGTACCTAGAGACC 57.190 43.478 0.00 0.00 0.00 3.85
3961 7065 3.162666 TGTACCTAGAGACCCACTTGTG 58.837 50.000 0.00 0.00 0.00 3.33
3963 7067 1.149288 ACCTAGAGACCCACTTGTGGA 59.851 52.381 20.27 0.00 0.00 4.02
3967 7071 2.110213 GACCCACTTGTGGACGCA 59.890 61.111 20.27 0.00 0.00 5.24
3968 7072 2.203153 ACCCACTTGTGGACGCAC 60.203 61.111 20.27 0.00 0.00 5.34
3969 7073 2.203139 CCCACTTGTGGACGCACA 60.203 61.111 20.27 0.00 0.00 4.57
3978 7082 1.824852 TGTGGACGCACAGACAGATAT 59.175 47.619 0.00 0.00 0.00 1.63
3980 7084 1.065551 TGGACGCACAGACAGATATCG 59.934 52.381 0.00 0.00 0.00 2.92
3981 7085 1.124462 GACGCACAGACAGATATCGC 58.876 55.000 0.00 0.00 0.00 4.58
3989 7093 3.255395 ACAGACAGATATCGCTGATCAGG 59.745 47.826 23.89 13.87 39.20 3.86
3998 7102 1.621317 TCGCTGATCAGGTACAACCAA 59.379 47.619 23.89 0.00 41.95 3.67
4001 7105 2.744202 GCTGATCAGGTACAACCAACAG 59.256 50.000 23.89 0.00 41.95 3.16
4009 7113 2.949644 GGTACAACCAACAGAGCAAGTT 59.050 45.455 0.00 0.00 38.42 2.66
4111 7215 3.849911 TGCTGAAGACAAGTATCCTTCG 58.150 45.455 0.00 0.00 39.18 3.79
4159 7263 1.464608 GCTGCATGCTCGTTAACAGAA 59.535 47.619 20.33 0.00 38.95 3.02
4243 7347 0.692756 TGCCCGGATATTCCCTGTCA 60.693 55.000 0.73 0.00 31.13 3.58
4310 7414 5.355596 CATTCAGGACTCTTACAGGTGATC 58.644 45.833 0.00 0.00 0.00 2.92
4360 7464 1.804748 GCAAACTACTTCCTTCCACCG 59.195 52.381 0.00 0.00 0.00 4.94
4387 7491 1.527380 GAACAAAGGGACCGTGCCA 60.527 57.895 12.15 0.00 0.00 4.92
4399 7503 1.459455 CCGTGCCACCCAATTGTTCA 61.459 55.000 4.43 0.00 0.00 3.18
4407 7511 3.194116 CCACCCAATTGTTCATCTTCCAG 59.806 47.826 4.43 0.00 0.00 3.86
4470 7580 2.512974 GCTGCCAATGCCAATGCC 60.513 61.111 0.00 0.00 36.33 4.40
4471 7581 2.982960 CTGCCAATGCCAATGCCA 59.017 55.556 0.00 0.00 36.33 4.92
4472 7582 1.297039 CTGCCAATGCCAATGCCAA 59.703 52.632 0.00 0.00 36.33 4.52
4473 7583 0.107410 CTGCCAATGCCAATGCCAAT 60.107 50.000 0.00 0.00 36.33 3.16
4474 7584 0.393132 TGCCAATGCCAATGCCAATG 60.393 50.000 0.00 0.00 36.33 2.82
4475 7585 1.720694 GCCAATGCCAATGCCAATGC 61.721 55.000 0.00 0.00 36.33 3.56
4476 7586 1.098712 CCAATGCCAATGCCAATGCC 61.099 55.000 0.00 0.00 36.33 4.40
4477 7587 0.393132 CAATGCCAATGCCAATGCCA 60.393 50.000 0.00 0.00 36.33 4.92
4478 7588 0.328592 AATGCCAATGCCAATGCCAA 59.671 45.000 0.00 0.00 36.33 4.52
4519 7629 2.208349 AGTGGCTGGTTCCCTCCT 59.792 61.111 0.00 0.00 0.00 3.69
4682 7793 3.673809 GTCTTGTTGTAACCGCAGTAGAG 59.326 47.826 0.00 0.00 0.00 2.43
4683 7794 3.570975 TCTTGTTGTAACCGCAGTAGAGA 59.429 43.478 0.00 0.00 0.00 3.10
4720 7831 9.988815 CTAATATTACCCATCATATGCTAGACC 57.011 37.037 0.00 0.00 0.00 3.85
4724 7835 4.234550 ACCCATCATATGCTAGACCTTGA 58.765 43.478 0.00 0.00 0.00 3.02
4726 7837 4.240888 CCATCATATGCTAGACCTTGACG 58.759 47.826 0.00 0.00 0.00 4.35
4737 7848 3.467803 AGACCTTGACGGAACTTTTGAG 58.532 45.455 0.00 0.00 36.31 3.02
4741 7852 4.095932 ACCTTGACGGAACTTTTGAGTTTC 59.904 41.667 0.00 0.00 36.31 2.78
4775 7886 9.747293 AGTTGACTTAGTAGTAACTCTTTTGTC 57.253 33.333 4.15 0.00 37.15 3.18
4796 7907 3.475754 GCGGTTAGCGGATAGAGAC 57.524 57.895 5.84 0.00 35.41 3.36
4797 7908 0.666913 GCGGTTAGCGGATAGAGACA 59.333 55.000 5.84 0.00 35.41 3.41
4815 7926 1.000938 ACACCGACGGTACAGAGAAAC 60.001 52.381 21.25 0.00 32.11 2.78
4852 7964 1.897560 CTGGGGTTTTCACTCTGTCC 58.102 55.000 0.00 0.00 0.00 4.02
4887 8005 4.316205 TTCAATCATGGATGATGCTTGC 57.684 40.909 2.86 0.00 46.22 4.01
4893 8011 1.089112 TGGATGATGCTTGCAAGACG 58.911 50.000 30.39 5.10 0.00 4.18
4931 8049 5.506708 GACTAAGTTATGGGTGGATTTGGT 58.493 41.667 0.00 0.00 0.00 3.67
5069 8190 7.933577 TCTCATCTTGTGTTGTTATGTTTCTCT 59.066 33.333 0.00 0.00 0.00 3.10
5077 8198 7.033185 GTGTTGTTATGTTTCTCTGTTTGGTT 58.967 34.615 0.00 0.00 0.00 3.67
5103 8224 1.305201 GTACACTGTGTGGTTGGGTG 58.695 55.000 22.97 0.00 37.94 4.61
5270 8398 0.034059 CCTGTGAGAGGTCCACACAC 59.966 60.000 9.41 9.41 39.36 3.82
5271 8399 0.034059 CTGTGAGAGGTCCACACACC 59.966 60.000 12.87 0.00 39.36 4.16
5272 8400 0.689412 TGTGAGAGGTCCACACACCA 60.689 55.000 12.87 1.19 39.36 4.17
5273 8401 0.249911 GTGAGAGGTCCACACACCAC 60.250 60.000 5.73 0.00 39.16 4.16
5274 8402 1.006102 GAGAGGTCCACACACCACG 60.006 63.158 0.00 0.00 39.16 4.94
5296 8427 1.670295 CACACTGCACTGCACACTAAA 59.330 47.619 0.00 0.00 33.79 1.85
5297 8428 2.291465 CACACTGCACTGCACACTAAAT 59.709 45.455 0.00 0.00 33.79 1.40
5298 8429 2.291465 ACACTGCACTGCACACTAAATG 59.709 45.455 0.00 0.00 33.79 2.32
5316 8447 0.035152 TGGCATTGTGAGGCTACCAG 60.035 55.000 0.00 0.00 32.08 4.00
5354 8485 7.773864 TTGCAAATTGTATTTGATATGCTGG 57.226 32.000 14.50 0.00 33.87 4.85
5360 8491 9.550406 AAATTGTATTTGATATGCTGGGATTTG 57.450 29.630 0.00 0.00 0.00 2.32
5384 8515 4.834496 TCTGCTGAAAATCTTTGATTGGGT 59.166 37.500 0.00 0.00 0.00 4.51
5454 8589 2.973945 CAGGTACCCTGTCTGCTTAAC 58.026 52.381 8.74 0.00 45.82 2.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 1.992170 TCGAAACTCGAAAGGCTAGC 58.008 50.000 6.04 6.04 46.90 3.42
20 21 7.602032 TTGGCACATAATCGTAGTCGAAACTC 61.602 42.308 0.00 0.00 44.44 3.01
21 22 5.851972 TTGGCACATAATCGTAGTCGAAACT 60.852 40.000 0.00 0.00 44.44 2.66
69 84 0.796312 CGTGTTTTCGCATGCTACCT 59.204 50.000 17.13 0.00 0.00 3.08
79 94 3.060607 CCAAAAATCTTGGCGTGTTTTCG 60.061 43.478 0.00 0.00 32.18 3.46
80 95 3.868661 ACCAAAAATCTTGGCGTGTTTTC 59.131 39.130 3.40 0.00 43.23 2.29
81 96 3.620821 CACCAAAAATCTTGGCGTGTTTT 59.379 39.130 3.40 0.00 43.23 2.43
82 97 3.194062 CACCAAAAATCTTGGCGTGTTT 58.806 40.909 3.40 0.00 43.23 2.83
83 98 2.820330 CACCAAAAATCTTGGCGTGTT 58.180 42.857 3.40 0.00 43.23 3.32
84 99 1.537990 GCACCAAAAATCTTGGCGTGT 60.538 47.619 3.40 0.00 43.23 4.49
123 138 4.995487 GCACTAGTAATATTACCACCCAGC 59.005 45.833 19.74 13.41 34.19 4.85
127 142 7.551617 ACACAAAGCACTAGTAATATTACCACC 59.448 37.037 19.74 6.62 34.19 4.61
135 150 6.354794 ACCTCACACAAAGCACTAGTAATA 57.645 37.500 0.00 0.00 0.00 0.98
136 151 5.228945 ACCTCACACAAAGCACTAGTAAT 57.771 39.130 0.00 0.00 0.00 1.89
137 152 4.682778 ACCTCACACAAAGCACTAGTAA 57.317 40.909 0.00 0.00 0.00 2.24
182 197 1.595109 CGCCGAGGATATTGCAGCA 60.595 57.895 0.00 0.00 0.00 4.41
183 198 1.160329 AACGCCGAGGATATTGCAGC 61.160 55.000 0.00 0.00 0.00 5.25
184 199 1.261619 GAAACGCCGAGGATATTGCAG 59.738 52.381 0.00 0.00 0.00 4.41
204 219 8.357796 ACGATTTACAGATCATAATCACACAG 57.642 34.615 0.00 0.00 34.07 3.66
220 239 4.624015 ACGAGAGAACCAAACGATTTACA 58.376 39.130 0.00 0.00 0.00 2.41
233 252 6.100004 TCTGTGGATTCATTAACGAGAGAAC 58.900 40.000 0.00 0.00 0.00 3.01
246 265 2.083774 GATGGCGTTTCTGTGGATTCA 58.916 47.619 0.00 0.00 0.00 2.57
301 322 6.660800 AGACCTGAGCAATACTAGTACTACA 58.339 40.000 4.31 1.52 0.00 2.74
351 373 0.326264 AGCTCTGGCCACGAGAAAAT 59.674 50.000 26.77 12.23 39.73 1.82
363 385 1.338020 GGTTCCAACACAAAGCTCTGG 59.662 52.381 0.00 0.00 0.00 3.86
386 408 6.118170 TGCTTGAGAGATTAATAAGCAGCTT 58.882 36.000 13.46 13.46 46.02 3.74
396 418 6.365970 AGGAACTCTTGCTTGAGAGATTAA 57.634 37.500 15.90 0.00 44.78 1.40
404 426 2.303022 CCACCTAGGAACTCTTGCTTGA 59.697 50.000 17.98 0.00 41.75 3.02
427 452 1.115467 ACCGGAGATAGCTCACCAAG 58.885 55.000 9.46 0.00 43.14 3.61
431 456 0.390860 ATGCACCGGAGATAGCTCAC 59.609 55.000 9.46 0.00 43.14 3.51
593 645 2.302157 AGCAGCTAAAAAGGTAGGTCGT 59.698 45.455 0.00 0.00 29.38 4.34
640 730 2.174639 TCCCAGCTCCTTGACAAAAAGA 59.825 45.455 0.00 0.00 0.00 2.52
642 732 2.746279 TCCCAGCTCCTTGACAAAAA 57.254 45.000 0.00 0.00 0.00 1.94
678 768 4.809193 TCCTGATACCTCAGTTGAGCTAT 58.191 43.478 3.58 0.60 46.33 2.97
704 794 2.474410 ACCTGTTCAAATCGACTCCC 57.526 50.000 0.00 0.00 0.00 4.30
743 833 2.038557 TGGGAGCACTACAGAAAAGGTC 59.961 50.000 0.00 0.00 0.00 3.85
787 880 0.457851 CTGAAGCCGTCTGTAGGGAG 59.542 60.000 0.00 0.00 31.98 4.30
791 884 1.135257 CCAGTCTGAAGCCGTCTGTAG 60.135 57.143 0.00 0.00 0.00 2.74
809 902 4.216472 TGAAATAACAACAATACGCTGCCA 59.784 37.500 0.00 0.00 0.00 4.92
824 917 9.846248 AAGCATTCATGTACTTTCTGAAATAAC 57.154 29.630 2.88 5.80 33.03 1.89
827 920 8.025445 GTCAAGCATTCATGTACTTTCTGAAAT 58.975 33.333 2.88 0.00 33.03 2.17
828 921 7.229306 AGTCAAGCATTCATGTACTTTCTGAAA 59.771 33.333 2.44 2.44 33.03 2.69
829 922 6.712095 AGTCAAGCATTCATGTACTTTCTGAA 59.288 34.615 0.00 0.00 33.75 3.02
830 923 6.233434 AGTCAAGCATTCATGTACTTTCTGA 58.767 36.000 0.00 0.00 0.00 3.27
832 925 7.229306 TCAAAGTCAAGCATTCATGTACTTTCT 59.771 33.333 0.00 0.00 0.00 2.52
833 926 7.324616 GTCAAAGTCAAGCATTCATGTACTTTC 59.675 37.037 0.00 0.00 0.00 2.62
855 948 1.974957 TGGGCTTGTAGTAGCAGTCAA 59.025 47.619 0.00 0.00 43.02 3.18
856 949 1.639722 TGGGCTTGTAGTAGCAGTCA 58.360 50.000 0.00 0.00 43.02 3.41
857 950 2.093447 ACATGGGCTTGTAGTAGCAGTC 60.093 50.000 0.00 0.00 43.02 3.51
858 951 1.909302 ACATGGGCTTGTAGTAGCAGT 59.091 47.619 0.00 0.00 43.02 4.40
859 952 2.698855 ACATGGGCTTGTAGTAGCAG 57.301 50.000 0.00 0.00 43.02 4.24
860 953 3.009033 AGAAACATGGGCTTGTAGTAGCA 59.991 43.478 0.00 0.00 43.02 3.49
861 954 3.610911 AGAAACATGGGCTTGTAGTAGC 58.389 45.455 0.00 0.00 40.48 3.58
862 955 5.705441 TGAAAGAAACATGGGCTTGTAGTAG 59.295 40.000 0.00 0.00 0.00 2.57
863 956 5.472137 GTGAAAGAAACATGGGCTTGTAGTA 59.528 40.000 0.00 0.00 0.00 1.82
864 957 4.278419 GTGAAAGAAACATGGGCTTGTAGT 59.722 41.667 0.00 0.00 0.00 2.73
865 958 4.278170 TGTGAAAGAAACATGGGCTTGTAG 59.722 41.667 0.00 0.00 0.00 2.74
866 959 4.211125 TGTGAAAGAAACATGGGCTTGTA 58.789 39.130 0.00 0.00 0.00 2.41
867 960 3.030291 TGTGAAAGAAACATGGGCTTGT 58.970 40.909 0.00 0.00 0.00 3.16
868 961 3.645884 CTGTGAAAGAAACATGGGCTTG 58.354 45.455 0.00 0.00 0.00 4.01
869 962 2.036346 GCTGTGAAAGAAACATGGGCTT 59.964 45.455 0.00 0.00 0.00 4.35
870 963 1.615392 GCTGTGAAAGAAACATGGGCT 59.385 47.619 0.00 0.00 0.00 5.19
871 964 1.340889 TGCTGTGAAAGAAACATGGGC 59.659 47.619 0.00 0.00 0.00 5.36
872 965 3.645884 CTTGCTGTGAAAGAAACATGGG 58.354 45.455 0.00 0.00 0.00 4.00
873 966 3.054878 GCTTGCTGTGAAAGAAACATGG 58.945 45.455 0.00 0.00 0.00 3.66
878 971 2.653726 TGGAGCTTGCTGTGAAAGAAA 58.346 42.857 0.00 0.00 0.00 2.52
890 983 1.665679 ACGTAAATCGCATGGAGCTTG 59.334 47.619 0.00 0.00 44.19 4.01
901 994 7.676393 AGCATCTAAAAGAAGAACGTAAATCG 58.324 34.615 0.00 0.00 46.00 3.34
908 1001 6.721571 TGGTAAGCATCTAAAAGAAGAACG 57.278 37.500 0.00 0.00 0.00 3.95
911 1004 8.109634 AGGAAATGGTAAGCATCTAAAAGAAGA 58.890 33.333 0.00 0.00 0.00 2.87
916 1009 6.210385 TGCAAGGAAATGGTAAGCATCTAAAA 59.790 34.615 0.00 0.00 0.00 1.52
986 1087 5.887378 TCATACCATGATCCCGTTTGGGC 62.887 52.174 0.00 0.00 44.50 5.36
1008 1113 4.702131 ACTGCAGAAAGAGTTTGAAGTTGT 59.298 37.500 23.35 0.00 25.70 3.32
1009 1114 5.240713 ACTGCAGAAAGAGTTTGAAGTTG 57.759 39.130 23.35 0.00 25.70 3.16
1010 1115 5.649831 AGAACTGCAGAAAGAGTTTGAAGTT 59.350 36.000 23.35 0.00 42.09 2.66
1027 1132 9.023967 CAAACTTGCCAAATATTATAGAACTGC 57.976 33.333 0.00 0.00 0.00 4.40
1129 1245 5.407407 TTTCTAGGCCTGTACTCTTTCAG 57.593 43.478 17.99 0.00 0.00 3.02
1153 1269 0.760945 AACCTAGATCCAGGCCGAGG 60.761 60.000 7.15 10.74 39.53 4.63
1160 1276 2.091055 TCCCTCCTGAACCTAGATCCAG 60.091 54.545 0.00 0.00 0.00 3.86
1165 1281 2.559931 CCTTGTCCCTCCTGAACCTAGA 60.560 54.545 0.00 0.00 0.00 2.43
1171 1287 1.059584 TGCACCTTGTCCCTCCTGAA 61.060 55.000 0.00 0.00 0.00 3.02
1172 1288 1.461268 TGCACCTTGTCCCTCCTGA 60.461 57.895 0.00 0.00 0.00 3.86
1201 1317 7.491048 CCAAATATTTCCCACGATTTAACCAAG 59.509 37.037 0.00 0.00 0.00 3.61
1210 1327 8.533569 AATTTACTCCAAATATTTCCCACGAT 57.466 30.769 0.00 0.00 35.74 3.73
1212 1329 7.147983 TGGAATTTACTCCAAATATTTCCCACG 60.148 37.037 0.00 0.00 42.69 4.94
1213 1330 8.073467 TGGAATTTACTCCAAATATTTCCCAC 57.927 34.615 0.00 0.00 42.69 4.61
1214 1331 7.147742 GCTGGAATTTACTCCAAATATTTCCCA 60.148 37.037 0.00 0.00 44.97 4.37
1215 1332 7.069950 AGCTGGAATTTACTCCAAATATTTCCC 59.930 37.037 0.00 0.00 44.97 3.97
1239 1356 7.708752 ACAGCATCATAACTAGAGAGTAAAAGC 59.291 37.037 0.00 0.00 33.58 3.51
1240 1357 9.029243 CACAGCATCATAACTAGAGAGTAAAAG 57.971 37.037 0.00 0.00 33.58 2.27
1246 1365 5.982516 GGTTCACAGCATCATAACTAGAGAG 59.017 44.000 0.00 0.00 0.00 3.20
1248 1367 5.053145 GGGTTCACAGCATCATAACTAGAG 58.947 45.833 0.00 0.00 0.00 2.43
1250 1369 4.813161 CAGGGTTCACAGCATCATAACTAG 59.187 45.833 0.00 0.00 0.00 2.57
1251 1370 4.225042 ACAGGGTTCACAGCATCATAACTA 59.775 41.667 0.00 0.00 0.00 2.24
1256 1375 2.592102 AACAGGGTTCACAGCATCAT 57.408 45.000 0.00 0.00 0.00 2.45
1261 1380 3.826729 AGGATTTTAACAGGGTTCACAGC 59.173 43.478 0.00 0.00 0.00 4.40
1268 1387 2.158385 TGTGGCAGGATTTTAACAGGGT 60.158 45.455 0.00 0.00 0.00 4.34
1276 1395 3.263170 GGGGTAAAATGTGGCAGGATTTT 59.737 43.478 16.95 16.95 36.14 1.82
1299 1418 5.560760 CGCAATGTCACAACTCACAACTAAT 60.561 40.000 0.00 0.00 0.00 1.73
1310 1429 1.267832 ACGTTGTCGCAATGTCACAAC 60.268 47.619 15.22 15.22 44.28 3.32
1311 1430 1.010580 ACGTTGTCGCAATGTCACAA 58.989 45.000 10.40 0.00 41.18 3.33
1312 1431 1.004398 GAACGTTGTCGCAATGTCACA 60.004 47.619 5.00 0.00 41.18 3.58
1313 1432 1.004398 TGAACGTTGTCGCAATGTCAC 60.004 47.619 5.00 12.75 41.18 3.67
1314 1433 1.004398 GTGAACGTTGTCGCAATGTCA 60.004 47.619 5.00 12.12 41.18 3.58
1315 1434 1.658968 GTGAACGTTGTCGCAATGTC 58.341 50.000 5.00 10.42 41.18 3.06
1316 1435 0.306533 GGTGAACGTTGTCGCAATGT 59.693 50.000 5.00 10.40 41.18 2.71
1329 1448 7.390823 ACAATAATAAACCAAATGGGGTGAAC 58.609 34.615 4.17 0.00 41.32 3.18
1332 1451 8.700051 TGATACAATAATAAACCAAATGGGGTG 58.300 33.333 4.17 0.00 41.32 4.61
1342 1461 9.878599 CTCATCCGTTTGATACAATAATAAACC 57.121 33.333 0.00 0.00 30.56 3.27
1365 1491 5.204292 AGCATGTCCTAGTGATCTAACTCA 58.796 41.667 0.00 0.00 0.00 3.41
1376 1502 4.684485 GCAGTTTCCATAGCATGTCCTAGT 60.684 45.833 0.00 0.00 0.00 2.57
1398 1524 4.507710 TCATGTCATCCTAACAAGTCTGC 58.492 43.478 0.00 0.00 0.00 4.26
1401 1527 6.520272 AGCTATCATGTCATCCTAACAAGTC 58.480 40.000 0.00 0.00 0.00 3.01
1435 1562 6.317140 CCTAACGAGTATGTGTCCTAGTTGTA 59.683 42.308 0.00 0.00 30.69 2.41
1472 1600 8.397906 TCATGAAATTTGAGGATTTCGACATAC 58.602 33.333 0.00 0.00 44.93 2.39
1503 1632 9.733556 TTGACAAAATTCCATAGAGCTTAACTA 57.266 29.630 0.00 0.00 0.00 2.24
1561 1690 1.451927 TATGGCCAAGAAGCAGCGG 60.452 57.895 10.96 0.00 0.00 5.52
1573 1708 1.226030 GCCGTATTCGTGGTATGGCC 61.226 60.000 0.00 0.00 44.72 5.36
1580 1715 1.883084 GCTGAGGCCGTATTCGTGG 60.883 63.158 0.00 0.00 35.01 4.94
1582 1717 0.179108 GAAGCTGAGGCCGTATTCGT 60.179 55.000 0.00 0.00 39.73 3.85
1584 1719 0.876342 CCGAAGCTGAGGCCGTATTC 60.876 60.000 0.00 0.00 39.73 1.75
1595 1730 0.814457 AGCTGACTAGTCCGAAGCTG 59.186 55.000 26.80 7.29 42.44 4.24
1598 1733 1.819288 TGGAAGCTGACTAGTCCGAAG 59.181 52.381 20.11 11.86 32.45 3.79
1682 1817 8.045176 ACTCCTTAGTTATTTTCTTGTGATGC 57.955 34.615 0.00 0.00 29.00 3.91
1756 1893 0.476771 TTCCACTTTCACCCCCAGTC 59.523 55.000 0.00 0.00 0.00 3.51
1777 1925 8.076178 ACACACTGAGTTAAATTATTTGAGTGC 58.924 33.333 0.00 0.00 33.19 4.40
1778 1926 9.950680 AACACACTGAGTTAAATTATTTGAGTG 57.049 29.630 0.00 0.00 35.50 3.51
1797 1945 6.286240 TCAGAGTGATAGCATAAACACACT 57.714 37.500 0.00 0.00 40.49 3.55
1822 1976 1.680338 GAACCAAGACTGCAACAGGT 58.320 50.000 0.00 0.00 35.51 4.00
1993 2152 5.312079 ACCAGAGGATTGCTAATGATAAGC 58.688 41.667 0.00 0.00 40.50 3.09
1997 2161 5.378230 TTGACCAGAGGATTGCTAATGAT 57.622 39.130 0.00 0.00 0.00 2.45
2059 2601 3.357203 TCACCTACAGTTGTTGGCAAAA 58.643 40.909 0.00 0.00 43.26 2.44
2097 2653 7.770201 TCAATGAATTTTCTGTGTTGAAGTCA 58.230 30.769 0.00 0.00 0.00 3.41
2110 2666 8.424274 ACAAGAACAAGGTTCAATGAATTTTC 57.576 30.769 16.56 0.00 0.00 2.29
2147 2703 7.148853 GCTAGCTGTTTTCAACTCAATTTCATG 60.149 37.037 7.70 0.00 0.00 3.07
2165 2721 3.436243 AGACAGTAAAGAGGCTAGCTGT 58.564 45.455 15.72 8.22 39.51 4.40
2180 2737 8.441312 TTTCGTTTATAAGGTTCAAAGACAGT 57.559 30.769 0.00 0.00 0.00 3.55
2221 2978 9.616156 TTCTAGGTAAAACACAATCACTTACAA 57.384 29.630 0.00 0.00 0.00 2.41
2316 3079 8.120465 GTCAAACATAAATTGGACATAGTACCG 58.880 37.037 0.00 0.00 0.00 4.02
2320 3083 9.912634 CAAAGTCAAACATAAATTGGACATAGT 57.087 29.630 0.00 0.00 0.00 2.12
2321 3084 9.357652 CCAAAGTCAAACATAAATTGGACATAG 57.642 33.333 0.00 0.00 38.44 2.23
2326 3089 9.083422 TGATACCAAAGTCAAACATAAATTGGA 57.917 29.630 8.49 0.00 38.44 3.53
2489 3252 6.210584 TCACAACACTATCACTGGTATCTTGA 59.789 38.462 0.00 0.00 0.00 3.02
2516 3279 6.040955 GGTCCTCAATTTTCTTCTTCTTTGGT 59.959 38.462 0.00 0.00 0.00 3.67
2522 3285 4.520492 TGCAGGTCCTCAATTTTCTTCTTC 59.480 41.667 0.00 0.00 0.00 2.87
2527 3290 2.800250 CCTGCAGGTCCTCAATTTTCT 58.200 47.619 25.53 0.00 0.00 2.52
2559 3322 6.421485 AGAAGGAGCATACATGTTGAGATTT 58.579 36.000 2.30 0.00 0.00 2.17
2576 3339 8.688747 ATAAGAAAATGCCATAAGAGAAGGAG 57.311 34.615 0.00 0.00 0.00 3.69
2612 3375 7.087409 TGACACAAGATGTTTAATATGCAGG 57.913 36.000 0.00 0.00 43.56 4.85
2688 3454 2.093306 TCTGCAACATCCGTCGAAAT 57.907 45.000 0.00 0.00 0.00 2.17
2692 3458 2.285220 CCTTTATCTGCAACATCCGTCG 59.715 50.000 0.00 0.00 0.00 5.12
2695 3461 2.355756 CACCCTTTATCTGCAACATCCG 59.644 50.000 0.00 0.00 0.00 4.18
2701 3467 1.890573 GCACCCACCCTTTATCTGCAA 60.891 52.381 0.00 0.00 0.00 4.08
2718 3485 3.084786 AGATAAACCCAAGCTCAAGCAC 58.915 45.455 4.59 0.00 45.16 4.40
2727 3494 9.288576 TGAGATGCATAATTAGATAAACCCAAG 57.711 33.333 0.00 0.00 0.00 3.61
2764 3531 5.639757 TGTGTTATAACTTGATGCACATGC 58.360 37.500 16.33 0.00 42.50 4.06
2767 3534 6.585702 GCATTTGTGTTATAACTTGATGCACA 59.414 34.615 24.85 15.28 34.20 4.57
2776 3764 8.634444 TGTTTTGTAGGCATTTGTGTTATAACT 58.366 29.630 16.33 0.00 0.00 2.24
2789 3777 7.176515 TGTTTCTGTATGATGTTTTGTAGGCAT 59.823 33.333 0.00 0.00 0.00 4.40
2796 3784 7.369607 TGGTCATGTTTCTGTATGATGTTTTG 58.630 34.615 0.00 0.00 35.91 2.44
2797 3785 7.523293 TGGTCATGTTTCTGTATGATGTTTT 57.477 32.000 0.00 0.00 35.91 2.43
2801 3789 7.541162 ACATTTGGTCATGTTTCTGTATGATG 58.459 34.615 0.00 0.00 33.29 3.07
2826 3815 7.238486 ACATTTTGTATTTTCATGCAGGGTA 57.762 32.000 0.00 0.00 0.00 3.69
2998 4089 5.442391 TGTTGCTTGAGTTTAGGGTTTACT 58.558 37.500 0.00 0.00 0.00 2.24
3004 4095 2.997485 GCTGTTGCTTGAGTTTAGGG 57.003 50.000 0.00 0.00 36.03 3.53
3016 4107 2.995466 TGTAGATGCAAAGCTGTTGC 57.005 45.000 20.06 20.06 45.11 4.17
3017 4108 4.090930 GCAAATGTAGATGCAAAGCTGTTG 59.909 41.667 0.00 0.00 42.12 3.33
3018 4109 4.021719 AGCAAATGTAGATGCAAAGCTGTT 60.022 37.500 0.00 0.00 44.95 3.16
3019 4110 3.508793 AGCAAATGTAGATGCAAAGCTGT 59.491 39.130 0.00 0.00 44.95 4.40
3020 4111 4.106029 AGCAAATGTAGATGCAAAGCTG 57.894 40.909 0.00 0.00 44.95 4.24
3021 4112 4.796038 AAGCAAATGTAGATGCAAAGCT 57.204 36.364 0.00 0.00 44.95 3.74
3022 4113 5.163923 GGAAAAGCAAATGTAGATGCAAAGC 60.164 40.000 0.00 0.00 44.95 3.51
3023 4114 5.349543 GGGAAAAGCAAATGTAGATGCAAAG 59.650 40.000 0.00 0.00 44.95 2.77
3024 4115 5.011943 AGGGAAAAGCAAATGTAGATGCAAA 59.988 36.000 0.00 0.00 44.95 3.68
3025 4116 4.527816 AGGGAAAAGCAAATGTAGATGCAA 59.472 37.500 0.00 0.00 44.95 4.08
3026 4117 4.088634 AGGGAAAAGCAAATGTAGATGCA 58.911 39.130 0.00 0.00 44.95 3.96
3027 4118 4.725790 AGGGAAAAGCAAATGTAGATGC 57.274 40.909 0.00 0.00 42.87 3.91
3028 4119 5.349543 GCAAAGGGAAAAGCAAATGTAGATG 59.650 40.000 0.00 0.00 0.00 2.90
3029 4120 5.011943 TGCAAAGGGAAAAGCAAATGTAGAT 59.988 36.000 0.00 0.00 33.48 1.98
3030 4121 4.343526 TGCAAAGGGAAAAGCAAATGTAGA 59.656 37.500 0.00 0.00 33.48 2.59
3031 4122 4.630111 TGCAAAGGGAAAAGCAAATGTAG 58.370 39.130 0.00 0.00 33.48 2.74
3040 4131 7.696992 TTAATACTACCTGCAAAGGGAAAAG 57.303 36.000 0.00 0.00 0.00 2.27
3044 4135 7.501225 GCTAATTTAATACTACCTGCAAAGGGA 59.499 37.037 0.00 0.00 0.00 4.20
3051 4142 8.804204 TCCTAGAGCTAATTTAATACTACCTGC 58.196 37.037 0.00 0.00 0.00 4.85
3070 4161 5.741388 AACATTTTTGCGCTATCCTAGAG 57.259 39.130 9.73 0.00 0.00 2.43
3093 4184 4.575885 ACCTTGTGTACATTAGCGAACAT 58.424 39.130 0.00 0.00 0.00 2.71
3098 4189 5.038683 TCGATTACCTTGTGTACATTAGCG 58.961 41.667 0.00 0.00 0.00 4.26
3111 4202 5.511545 GCATCAGGGAACTATCGATTACCTT 60.512 44.000 1.71 0.00 37.01 3.50
3114 4205 4.686554 GTGCATCAGGGAACTATCGATTAC 59.313 45.833 1.71 0.00 40.21 1.89
3118 4209 1.412710 GGTGCATCAGGGAACTATCGA 59.587 52.381 0.00 0.00 40.21 3.59
3120 4211 3.388024 TGTAGGTGCATCAGGGAACTATC 59.612 47.826 0.00 0.00 39.50 2.08
3124 4215 2.489938 TTGTAGGTGCATCAGGGAAC 57.510 50.000 0.00 0.00 0.00 3.62
3127 5730 4.019174 AGAATTTTGTAGGTGCATCAGGG 58.981 43.478 0.00 0.00 0.00 4.45
3133 5736 7.759489 AAACTATCAGAATTTTGTAGGTGCA 57.241 32.000 0.00 0.00 0.00 4.57
3187 5792 7.038231 CCCTTCCCTTATATTTCGGAGAAGTAT 60.038 40.741 0.00 3.87 45.90 2.12
3188 5793 6.269307 CCCTTCCCTTATATTTCGGAGAAGTA 59.731 42.308 0.00 0.00 45.90 2.24
3189 5794 5.071923 CCCTTCCCTTATATTTCGGAGAAGT 59.928 44.000 0.00 0.00 45.90 3.01
3190 5795 5.513267 CCCCTTCCCTTATATTTCGGAGAAG 60.513 48.000 0.00 0.00 45.90 2.85
3191 5796 4.349930 CCCCTTCCCTTATATTTCGGAGAA 59.650 45.833 0.00 0.00 45.90 2.87
3192 5797 3.908103 CCCCTTCCCTTATATTTCGGAGA 59.092 47.826 0.00 0.00 0.00 3.71
3193 5798 3.651423 ACCCCTTCCCTTATATTTCGGAG 59.349 47.826 0.00 0.00 0.00 4.63
3195 5800 3.137728 ACACCCCTTCCCTTATATTTCGG 59.862 47.826 0.00 0.00 0.00 4.30
3196 5801 4.134563 CACACCCCTTCCCTTATATTTCG 58.865 47.826 0.00 0.00 0.00 3.46
3197 5802 5.382664 TCACACCCCTTCCCTTATATTTC 57.617 43.478 0.00 0.00 0.00 2.17
3199 5804 5.806955 TTTCACACCCCTTCCCTTATATT 57.193 39.130 0.00 0.00 0.00 1.28
3203 5940 2.787035 ACTTTTCACACCCCTTCCCTTA 59.213 45.455 0.00 0.00 0.00 2.69
3204 5941 1.573857 ACTTTTCACACCCCTTCCCTT 59.426 47.619 0.00 0.00 0.00 3.95
3207 5944 3.503800 AGTACTTTTCACACCCCTTCC 57.496 47.619 0.00 0.00 0.00 3.46
3225 5962 3.064820 CCGCAATTAGTTTGGCGATTAGT 59.935 43.478 6.44 0.00 37.16 2.24
3234 5971 3.192422 TCCAACCATCCGCAATTAGTTTG 59.808 43.478 0.00 0.00 38.43 2.93
3235 5972 3.426615 TCCAACCATCCGCAATTAGTTT 58.573 40.909 0.00 0.00 0.00 2.66
3242 5986 1.173043 GACAATCCAACCATCCGCAA 58.827 50.000 0.00 0.00 0.00 4.85
3243 5987 0.037447 TGACAATCCAACCATCCGCA 59.963 50.000 0.00 0.00 0.00 5.69
3244 5988 1.173043 TTGACAATCCAACCATCCGC 58.827 50.000 0.00 0.00 0.00 5.54
3245 5989 3.696051 AGATTTGACAATCCAACCATCCG 59.304 43.478 0.00 0.00 39.95 4.18
3340 6090 3.431673 TCACATCTGCAACCCATTACA 57.568 42.857 0.00 0.00 0.00 2.41
3341 6091 4.989279 ATTCACATCTGCAACCCATTAC 57.011 40.909 0.00 0.00 0.00 1.89
3358 6108 3.826157 AGGGCGTGAAATGAAGAAATTCA 59.174 39.130 0.00 0.00 35.15 2.57
3359 6109 4.440839 AGGGCGTGAAATGAAGAAATTC 57.559 40.909 0.00 0.00 0.00 2.17
3360 6110 4.524328 AGAAGGGCGTGAAATGAAGAAATT 59.476 37.500 0.00 0.00 0.00 1.82
3361 6111 4.082125 AGAAGGGCGTGAAATGAAGAAAT 58.918 39.130 0.00 0.00 0.00 2.17
3362 6112 3.486383 AGAAGGGCGTGAAATGAAGAAA 58.514 40.909 0.00 0.00 0.00 2.52
3363 6113 3.074412 GAGAAGGGCGTGAAATGAAGAA 58.926 45.455 0.00 0.00 0.00 2.52
3364 6114 2.303022 AGAGAAGGGCGTGAAATGAAGA 59.697 45.455 0.00 0.00 0.00 2.87
3367 6117 3.181465 GGATAGAGAAGGGCGTGAAATGA 60.181 47.826 0.00 0.00 0.00 2.57
3368 6118 3.134458 GGATAGAGAAGGGCGTGAAATG 58.866 50.000 0.00 0.00 0.00 2.32
3369 6119 3.041946 AGGATAGAGAAGGGCGTGAAAT 58.958 45.455 0.00 0.00 0.00 2.17
3370 6120 2.467880 AGGATAGAGAAGGGCGTGAAA 58.532 47.619 0.00 0.00 0.00 2.69
3371 6121 2.160721 AGGATAGAGAAGGGCGTGAA 57.839 50.000 0.00 0.00 0.00 3.18
3372 6122 3.308035 TTAGGATAGAGAAGGGCGTGA 57.692 47.619 0.00 0.00 0.00 4.35
3373 6123 4.608948 ATTTAGGATAGAGAAGGGCGTG 57.391 45.455 0.00 0.00 0.00 5.34
3374 6124 5.601313 TGTAATTTAGGATAGAGAAGGGCGT 59.399 40.000 0.00 0.00 0.00 5.68
3375 6125 6.097915 TGTAATTTAGGATAGAGAAGGGCG 57.902 41.667 0.00 0.00 0.00 6.13
3376 6126 8.926092 ATTTGTAATTTAGGATAGAGAAGGGC 57.074 34.615 0.00 0.00 0.00 5.19
3414 6164 3.120718 CCAATACCAAAACGCATTGCAAC 60.121 43.478 0.00 0.00 0.00 4.17
3415 6165 3.062763 CCAATACCAAAACGCATTGCAA 58.937 40.909 9.69 0.00 0.00 4.08
3418 6168 4.149747 GTGTTCCAATACCAAAACGCATTG 59.850 41.667 0.00 0.00 33.48 2.82
3419 6169 4.202161 TGTGTTCCAATACCAAAACGCATT 60.202 37.500 0.00 0.00 37.25 3.56
3420 6170 3.319405 TGTGTTCCAATACCAAAACGCAT 59.681 39.130 0.00 0.00 37.25 4.73
3421 6171 2.688446 TGTGTTCCAATACCAAAACGCA 59.312 40.909 0.00 0.00 39.16 5.24
3422 6172 3.357166 TGTGTTCCAATACCAAAACGC 57.643 42.857 0.00 0.00 33.78 4.84
3423 6173 6.699642 AGAAATTGTGTTCCAATACCAAAACG 59.300 34.615 0.00 0.00 43.04 3.60
3424 6174 9.191995 CTAGAAATTGTGTTCCAATACCAAAAC 57.808 33.333 0.00 0.00 43.04 2.43
3433 6183 9.349713 AGATGTAAACTAGAAATTGTGTTCCAA 57.650 29.630 0.00 0.00 37.49 3.53
3434 6184 8.783093 CAGATGTAAACTAGAAATTGTGTTCCA 58.217 33.333 0.00 0.00 0.00 3.53
3435 6185 8.784043 ACAGATGTAAACTAGAAATTGTGTTCC 58.216 33.333 0.00 0.00 0.00 3.62
3437 6187 9.337396 TCACAGATGTAAACTAGAAATTGTGTT 57.663 29.630 0.00 0.00 35.13 3.32
3438 6188 8.902540 TCACAGATGTAAACTAGAAATTGTGT 57.097 30.769 0.00 0.00 35.13 3.72
3452 6202 8.877864 AGGAAATTGGTAATTCACAGATGTAA 57.122 30.769 0.00 0.00 0.00 2.41
3454 6204 8.877864 TTAGGAAATTGGTAATTCACAGATGT 57.122 30.769 0.00 0.00 0.00 3.06
3475 6369 6.895756 TGTGGTATAGCCTGTAGGATATTAGG 59.104 42.308 13.35 0.00 43.69 2.69
3490 6547 1.327764 GCTGCGAAAGTGTGGTATAGC 59.672 52.381 0.00 0.00 0.00 2.97
3491 6548 1.933853 GGCTGCGAAAGTGTGGTATAG 59.066 52.381 0.00 0.00 0.00 1.31
3495 6552 0.324943 ATAGGCTGCGAAAGTGTGGT 59.675 50.000 0.00 0.00 0.00 4.16
3513 6570 8.846211 CGTGTAGGTCAATATGGGAAATTTAAT 58.154 33.333 0.00 0.00 0.00 1.40
3521 6578 3.367321 TGACGTGTAGGTCAATATGGGA 58.633 45.455 0.00 0.00 43.55 4.37
3536 6593 5.502382 GCACCACTTTCATGTATATGACGTG 60.502 44.000 17.30 17.30 42.79 4.49
3548 6651 1.069049 GCAGTTTGGCACCACTTTCAT 59.931 47.619 0.00 0.00 0.00 2.57
3561 6664 1.651240 CTGAGGGCATCGGCAGTTTG 61.651 60.000 0.00 0.00 43.71 2.93
3608 6711 8.088365 GGGTAGCAACAAAGATTCTTTGTAATT 58.912 33.333 33.70 25.12 41.30 1.40
3609 6712 7.232534 TGGGTAGCAACAAAGATTCTTTGTAAT 59.767 33.333 33.70 25.73 41.30 1.89
3610 6713 6.547880 TGGGTAGCAACAAAGATTCTTTGTAA 59.452 34.615 33.70 21.22 41.30 2.41
3611 6714 6.065374 TGGGTAGCAACAAAGATTCTTTGTA 58.935 36.000 33.70 21.17 41.30 2.41
3645 6749 5.730550 TGGTGCAGTAATAGTTAGGTTGAG 58.269 41.667 0.00 0.00 0.00 3.02
3687 6791 3.396260 GCCGTCCAGCCTGTATATTTA 57.604 47.619 0.00 0.00 0.00 1.40
3722 6826 2.773458 TCCCTTTGGAGACACCCTC 58.227 57.895 0.00 0.00 42.67 4.30
3745 6849 0.035881 CCTGAAGCTCCAAGTCTGCA 59.964 55.000 0.00 0.00 0.00 4.41
3748 6852 0.689623 CCACCTGAAGCTCCAAGTCT 59.310 55.000 0.00 0.00 0.00 3.24
3751 6855 0.538057 TTGCCACCTGAAGCTCCAAG 60.538 55.000 0.00 0.00 0.00 3.61
3755 6859 1.538950 CTTTCTTGCCACCTGAAGCTC 59.461 52.381 0.00 0.00 0.00 4.09
3764 6868 2.413371 GCTGATCGTTCTTTCTTGCCAC 60.413 50.000 0.00 0.00 0.00 5.01
3778 6882 0.926155 CATGGTTCAGACGCTGATCG 59.074 55.000 9.78 0.00 40.39 3.69
3786 6890 2.097142 GCAGCAGATTCATGGTTCAGAC 59.903 50.000 0.00 0.00 0.00 3.51
3793 6897 2.640184 TCTCTTGCAGCAGATTCATGG 58.360 47.619 0.00 0.00 0.00 3.66
3807 6911 5.163774 GGCTCTACATTTGCTTCTTCTCTTG 60.164 44.000 0.00 0.00 0.00 3.02
3826 6930 1.423794 TTCCCTTGGGTTTCGGCTCT 61.424 55.000 5.51 0.00 0.00 4.09
3865 6969 1.664016 GGTGCAGCAATCTGTTTCACG 60.664 52.381 11.86 0.00 42.29 4.35
3907 7011 0.307760 CGTTCCTTTTCAGCGCAGTT 59.692 50.000 11.47 0.00 0.00 3.16
3913 7017 1.197949 GCTTCCTCGTTCCTTTTCAGC 59.802 52.381 0.00 0.00 0.00 4.26
3923 7027 4.080526 AGGTACATTATTGGCTTCCTCGTT 60.081 41.667 0.00 0.00 0.00 3.85
3926 7030 6.267928 TCTCTAGGTACATTATTGGCTTCCTC 59.732 42.308 0.00 0.00 0.00 3.71
3934 7038 6.732896 AGTGGGTCTCTAGGTACATTATTG 57.267 41.667 0.00 0.00 0.00 1.90
3938 7042 4.223032 CACAAGTGGGTCTCTAGGTACATT 59.777 45.833 0.00 0.00 0.00 2.71
3943 7047 1.645710 CCACAAGTGGGTCTCTAGGT 58.354 55.000 11.43 0.00 46.81 3.08
3961 7065 1.759994 CGATATCTGTCTGTGCGTCC 58.240 55.000 0.34 0.00 0.00 4.79
3963 7067 0.741326 AGCGATATCTGTCTGTGCGT 59.259 50.000 0.34 0.00 0.00 5.24
3967 7071 3.255395 CCTGATCAGCGATATCTGTCTGT 59.745 47.826 17.76 0.00 35.63 3.41
3968 7072 3.255395 ACCTGATCAGCGATATCTGTCTG 59.745 47.826 17.76 5.79 35.63 3.51
3969 7073 3.495331 ACCTGATCAGCGATATCTGTCT 58.505 45.455 17.76 0.00 35.63 3.41
3978 7082 1.262417 TGGTTGTACCTGATCAGCGA 58.738 50.000 17.76 3.90 39.58 4.93
3980 7084 2.744202 CTGTTGGTTGTACCTGATCAGC 59.256 50.000 17.76 4.54 39.58 4.26
3981 7085 4.248859 CTCTGTTGGTTGTACCTGATCAG 58.751 47.826 16.24 16.24 39.58 2.90
3989 7093 5.744666 TTAACTTGCTCTGTTGGTTGTAC 57.255 39.130 0.00 0.00 0.00 2.90
3998 7102 7.719633 TGACTTAGGATTTTTAACTTGCTCTGT 59.280 33.333 0.00 0.00 0.00 3.41
4001 7105 9.399403 CTTTGACTTAGGATTTTTAACTTGCTC 57.601 33.333 0.00 0.00 0.00 4.26
4009 7113 9.705290 GAAATTGCCTTTGACTTAGGATTTTTA 57.295 29.630 0.00 0.00 34.56 1.52
4111 7215 4.698575 CTCCTAGTATTTGTTCAGGAGCC 58.301 47.826 3.18 0.00 44.29 4.70
4159 7263 3.987404 GCATTCTGGCGTCCAACT 58.013 55.556 0.35 0.00 30.80 3.16
4243 7347 3.119101 ACCAGATACTTCGAAACAGCGAT 60.119 43.478 0.00 0.00 40.35 4.58
4310 7414 2.222027 GTTGTTGTCAAGGACAGGGAG 58.778 52.381 0.00 0.00 43.69 4.30
4360 7464 0.034896 TCCCTTTGTTCGAGTCCTGC 59.965 55.000 0.00 0.00 0.00 4.85
4387 7491 4.118168 ACTGGAAGATGAACAATTGGGT 57.882 40.909 10.83 0.00 37.43 4.51
4399 7503 2.501723 AGCACCGTCATAACTGGAAGAT 59.498 45.455 0.00 0.00 37.43 2.40
4407 7511 1.135199 TCTTCCGAGCACCGTCATAAC 60.135 52.381 0.00 0.00 36.31 1.89
4467 7577 2.284773 ATGGCCTTGGCATTGGCA 60.285 55.556 26.01 20.45 46.61 4.92
4473 7583 1.751733 GCTTATCTGATGGCCTTGGCA 60.752 52.381 14.04 1.72 43.52 4.92
4474 7584 0.957362 GCTTATCTGATGGCCTTGGC 59.043 55.000 3.32 2.49 0.00 4.52
4475 7585 2.106166 AGAGCTTATCTGATGGCCTTGG 59.894 50.000 3.32 0.00 36.69 3.61
4476 7586 3.488778 AGAGCTTATCTGATGGCCTTG 57.511 47.619 3.32 0.00 36.69 3.61
4477 7587 3.969976 TGTAGAGCTTATCTGATGGCCTT 59.030 43.478 3.32 0.00 39.20 4.35
4478 7588 3.577848 CTGTAGAGCTTATCTGATGGCCT 59.422 47.826 3.32 6.93 39.20 5.19
4519 7629 2.325661 TCCCAGATGGAGTTCACTGA 57.674 50.000 0.00 0.00 38.61 3.41
4560 7670 8.650143 AACTAAGGATTCCTTCTTATTTGCAA 57.350 30.769 21.20 0.00 43.57 4.08
4682 7793 6.582636 TGGGTAATATTAGCGATGGATCATC 58.417 40.000 16.35 0.00 37.50 2.92
4683 7794 6.560003 TGGGTAATATTAGCGATGGATCAT 57.440 37.500 16.35 0.00 32.16 2.45
4720 7831 5.163754 ACAGAAACTCAAAAGTTCCGTCAAG 60.164 40.000 0.00 0.00 45.07 3.02
4724 7835 5.425630 ACTACAGAAACTCAAAAGTTCCGT 58.574 37.500 0.00 0.00 45.07 4.69
4726 7837 8.434733 ACTTACTACAGAAACTCAAAAGTTCC 57.565 34.615 0.00 0.00 45.07 3.62
4775 7886 0.660595 CTCTATCCGCTAACCGCACG 60.661 60.000 0.00 0.00 39.08 5.34
4796 7907 1.668047 GGTTTCTCTGTACCGTCGGTG 60.668 57.143 27.20 10.57 36.19 4.94
4797 7908 0.600057 GGTTTCTCTGTACCGTCGGT 59.400 55.000 22.66 22.66 40.16 4.69
4852 7964 0.243636 ATTGAAAGGGGCTTTTCGCG 59.756 50.000 0.00 0.00 39.39 5.87
4887 8005 5.694910 AGTCCAGTTAACATAACACGTCTTG 59.305 40.000 8.61 0.00 0.00 3.02
4931 8049 5.924356 TCACAAGGACACTAATCACAGAAA 58.076 37.500 0.00 0.00 0.00 2.52
5069 8190 3.027412 AGTGTACATGCCAAACCAAACA 58.973 40.909 0.00 0.00 0.00 2.83
5077 8198 1.133945 ACCACACAGTGTACATGCCAA 60.134 47.619 5.69 0.00 0.00 4.52
5103 8224 2.576615 GAGGAGGCACCACCAATTATC 58.423 52.381 3.18 0.00 43.14 1.75
5188 8316 2.105649 TCAAGGACCACAGTGCACATAA 59.894 45.455 21.04 0.00 36.65 1.90
5270 8398 3.653009 CAGTGCAGTGTGGCGTGG 61.653 66.667 13.67 0.00 36.28 4.94
5271 8399 4.318021 GCAGTGCAGTGTGGCGTG 62.318 66.667 22.22 0.00 36.28 5.34
5272 8400 4.854924 TGCAGTGCAGTGTGGCGT 62.855 61.111 22.22 0.00 36.28 5.68
5273 8401 4.318021 GTGCAGTGCAGTGTGGCG 62.318 66.667 20.42 0.00 40.08 5.69
5274 8402 3.211245 TGTGCAGTGCAGTGTGGC 61.211 61.111 20.42 6.09 40.08 5.01
5296 8427 0.625316 TGGTAGCCTCACAATGCCAT 59.375 50.000 0.00 0.00 0.00 4.40
5297 8428 0.035152 CTGGTAGCCTCACAATGCCA 60.035 55.000 0.00 0.00 0.00 4.92
5298 8429 0.749454 CCTGGTAGCCTCACAATGCC 60.749 60.000 0.00 0.00 0.00 4.40
5316 8447 7.245419 ACAATTTGCAATGTAAACTTTGACC 57.755 32.000 14.07 0.00 34.17 4.02
5348 8479 1.005097 TCAGCAGACAAATCCCAGCAT 59.995 47.619 0.00 0.00 0.00 3.79
5351 8482 4.461781 AGATTTTCAGCAGACAAATCCCAG 59.538 41.667 15.98 0.00 37.55 4.45
5354 8485 6.449698 TCAAAGATTTTCAGCAGACAAATCC 58.550 36.000 15.98 6.05 37.55 3.01
5360 8491 5.166398 CCCAATCAAAGATTTTCAGCAGAC 58.834 41.667 0.00 0.00 0.00 3.51
5384 8515 6.482308 CACTTCTGCATCATCACAAGATCATA 59.518 38.462 0.00 0.00 30.20 2.15
5454 8589 3.011818 TGCACCATCTACAAATGAGCTG 58.988 45.455 0.00 0.00 32.32 4.24



Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.