Multiple sequence alignment - TraesCS2B01G442600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G442600 chr2B 100.000 3347 0 0 1 3347 636088559 636091905 0.000000e+00 6181.0
1 TraesCS2B01G442600 chr2B 80.617 227 34 8 1000 1220 636003740 636003962 2.070000e-37 167.0
2 TraesCS2B01G442600 chr2B 81.132 106 20 0 1062 1167 634663073 634663178 5.950000e-13 86.1
3 TraesCS2B01G442600 chr2D 90.112 2589 177 29 1 2539 534733649 534736208 0.000000e+00 3290.0
4 TraesCS2B01G442600 chr2D 77.769 1300 228 35 1062 2329 534527022 534525752 0.000000e+00 743.0
5 TraesCS2B01G442600 chr2D 84.803 533 67 9 2605 3130 534736206 534736731 1.060000e-144 523.0
6 TraesCS2B01G442600 chr2D 78.212 794 146 15 1547 2329 534484428 534485205 1.810000e-132 483.0
7 TraesCS2B01G442600 chr2D 86.093 302 30 5 2773 3066 534737045 534737342 6.970000e-82 315.0
8 TraesCS2B01G442600 chr2D 81.675 191 33 2 1031 1220 534728471 534728660 1.240000e-34 158.0
9 TraesCS2B01G442600 chr2A 91.566 2324 135 26 646 2927 678116619 678118923 0.000000e+00 3149.0
10 TraesCS2B01G442600 chr2A 84.578 616 68 15 1 615 678114408 678114997 1.340000e-163 586.0
11 TraesCS2B01G442600 chr2A 85.407 418 44 13 2413 2827 678139311 678139714 5.160000e-113 418.0
12 TraesCS2B01G442600 chr2A 87.374 198 20 2 2931 3123 678124300 678124497 4.350000e-54 222.0
13 TraesCS2B01G442600 chr2A 81.588 277 41 9 3 275 678035065 678034795 1.560000e-53 220.0
14 TraesCS2B01G442600 chr2A 83.505 194 32 0 1030 1223 678039227 678039034 7.380000e-42 182.0
15 TraesCS2B01G442600 chr2A 81.333 225 34 7 1000 1220 678074965 678075185 3.430000e-40 176.0
16 TraesCS2B01G442600 chr2A 100.000 28 0 0 627 654 678115037 678115064 6.000000e-03 52.8
17 TraesCS2B01G442600 chr4B 88.997 309 31 3 2229 2536 564110494 564110800 2.440000e-101 379.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G442600 chr2B 636088559 636091905 3346 False 6181.0 6181 100.000000 1 3347 1 chr2B.!!$F3 3346
1 TraesCS2B01G442600 chr2D 534733649 534737342 3693 False 1376.0 3290 87.002667 1 3130 3 chr2D.!!$F3 3129
2 TraesCS2B01G442600 chr2D 534525752 534527022 1270 True 743.0 743 77.769000 1062 2329 1 chr2D.!!$R1 1267
3 TraesCS2B01G442600 chr2D 534484428 534485205 777 False 483.0 483 78.212000 1547 2329 1 chr2D.!!$F1 782
4 TraesCS2B01G442600 chr2A 678114408 678118923 4515 False 1262.6 3149 92.048000 1 2927 3 chr2A.!!$F4 2926
5 TraesCS2B01G442600 chr2A 678034795 678039227 4432 True 201.0 220 82.546500 3 1223 2 chr2A.!!$R1 1220

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
315 325 0.613260 TTGATTCACCCACTCCCGAG 59.387 55.0 0.0 0.0 0.00 4.63 F
739 2353 0.857675 TACTCCATCCAGATCCGGGA 59.142 55.0 0.0 0.0 39.14 5.14 F
1707 3417 0.107456 CCACAGACAGTTGGAGCACT 59.893 55.0 0.0 0.0 0.00 4.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1226 2861 0.030773 CTGAATCGCGCTAGGCACTA 59.969 55.0 5.56 0.00 43.84 2.74 R
2099 3816 0.674895 GACGAGCATGGCACCTCTTT 60.675 55.0 13.19 2.75 0.00 2.52 R
3272 7674 0.179067 TCAACCGTGGGAGTGTTGTC 60.179 55.0 0.00 0.00 40.13 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
67 68 6.940298 AGCAATAGGTTTTGTAAGAGCAACTA 59.060 34.615 0.00 0.00 0.00 2.24
72 73 5.473504 AGGTTTTGTAAGAGCAACTATGGTG 59.526 40.000 0.00 0.00 37.41 4.17
77 78 3.340814 AAGAGCAACTATGGTGGAGTG 57.659 47.619 0.00 0.00 37.41 3.51
125 126 2.504175 GTTAACATGGAGGCTACAGGGA 59.496 50.000 16.82 0.00 0.00 4.20
127 128 1.330655 ACATGGAGGCTACAGGGACG 61.331 60.000 16.82 0.00 0.00 4.79
140 141 5.642491 GCTACAGGGACGAAAATTTACTCTT 59.358 40.000 0.00 0.00 0.00 2.85
179 180 6.851836 ACCTCCCTCTATCTCCATAATTTTGA 59.148 38.462 0.00 0.00 0.00 2.69
180 181 7.350921 ACCTCCCTCTATCTCCATAATTTTGAA 59.649 37.037 0.00 0.00 0.00 2.69
182 183 9.282569 CTCCCTCTATCTCCATAATTTTGAAAG 57.717 37.037 0.00 0.00 0.00 2.62
183 184 8.781951 TCCCTCTATCTCCATAATTTTGAAAGT 58.218 33.333 0.00 0.00 0.00 2.66
184 185 9.413734 CCCTCTATCTCCATAATTTTGAAAGTT 57.586 33.333 0.00 0.00 0.00 2.66
203 204 1.444933 TGGGAGCTCCAAAAAGAGGA 58.555 50.000 33.29 3.10 43.84 3.71
235 236 5.914716 TCTATATTGGAGGTTATTGGGGTGT 59.085 40.000 0.00 0.00 0.00 4.16
255 256 7.255139 GGGGTGTAATATAGTGCACTTCAAATC 60.255 40.741 27.06 12.46 32.90 2.17
256 257 7.499232 GGGTGTAATATAGTGCACTTCAAATCT 59.501 37.037 27.06 1.78 32.90 2.40
262 263 6.992063 ATAGTGCACTTCAAATCTAACTGG 57.008 37.500 27.06 0.00 0.00 4.00
263 264 4.074970 AGTGCACTTCAAATCTAACTGGG 58.925 43.478 15.25 0.00 0.00 4.45
264 265 3.821033 GTGCACTTCAAATCTAACTGGGT 59.179 43.478 10.32 0.00 0.00 4.51
293 294 4.013050 TCACACACAACAAATCCAACTGA 58.987 39.130 0.00 0.00 0.00 3.41
313 323 1.904287 TTTTGATTCACCCACTCCCG 58.096 50.000 0.00 0.00 0.00 5.14
315 325 0.613260 TTGATTCACCCACTCCCGAG 59.387 55.000 0.00 0.00 0.00 4.63
370 380 2.872245 CACTATACCAGTCCCAAATGCG 59.128 50.000 0.00 0.00 34.26 4.73
371 381 2.504175 ACTATACCAGTCCCAAATGCGT 59.496 45.455 0.00 0.00 28.33 5.24
394 404 2.938956 AACTCACTAGCAAGCCAACT 57.061 45.000 0.00 0.00 0.00 3.16
435 445 3.679083 GCTACTAAGCTTCACCCGTTCAT 60.679 47.826 0.00 0.00 45.85 2.57
451 461 3.390135 GTTCATCGTGTTCTCCAACTCA 58.610 45.455 0.00 0.00 33.17 3.41
464 474 1.608336 AACTCACCCCGGTCGATGA 60.608 57.895 0.00 0.00 0.00 2.92
601 611 4.722700 CGCTCTGGGGTTGGTGGG 62.723 72.222 0.00 0.00 0.00 4.61
624 634 3.803082 CGTGGCGCCTGTGAATGG 61.803 66.667 29.70 3.64 0.00 3.16
625 635 4.120331 GTGGCGCCTGTGAATGGC 62.120 66.667 29.70 0.00 46.42 4.40
702 2310 3.634504 TGCTTCCATAGTTCATGCCAAT 58.365 40.909 0.00 0.00 32.84 3.16
739 2353 0.857675 TACTCCATCCAGATCCGGGA 59.142 55.000 0.00 0.00 39.14 5.14
742 2357 0.857675 TCCATCCAGATCCGGGAGTA 59.142 55.000 0.00 0.00 37.96 2.59
766 2381 4.692475 CACGACCCAACGACCCCC 62.692 72.222 0.00 0.00 37.03 5.40
769 2384 4.078516 GACCCAACGACCCCCGAG 62.079 72.222 0.00 0.00 41.76 4.63
1053 2688 0.900647 AACTCCTGGACGACCTCCTG 60.901 60.000 5.33 0.00 40.26 3.86
1060 2695 1.679305 GACGACCTCCTGCTCCTCA 60.679 63.158 0.00 0.00 0.00 3.86
1141 2776 1.065564 GGCTCTGCCTCATCAAAGACT 60.066 52.381 0.73 0.00 46.69 3.24
1249 2890 2.663188 CTAGCGCGATTCAGCCCC 60.663 66.667 12.10 0.00 0.00 5.80
1251 2892 3.151958 TAGCGCGATTCAGCCCCTC 62.152 63.158 12.10 0.00 0.00 4.30
1266 2907 1.691482 CCCCTCAGAAGGATACCCGAA 60.691 57.143 0.00 0.00 46.67 4.30
1267 2908 2.330216 CCCTCAGAAGGATACCCGAAT 58.670 52.381 0.00 0.00 46.67 3.34
1360 3040 1.999648 TGGGCTCTTCAACTTTGCAT 58.000 45.000 0.00 0.00 0.00 3.96
1397 3077 1.666011 GTGGTCTTCTCCTCGTGCA 59.334 57.895 0.00 0.00 0.00 4.57
1433 3113 3.948719 GGTCGACCACCAAGGCCA 61.949 66.667 29.75 0.00 45.98 5.36
1438 3118 4.265056 ACCACCAAGGCCACCGTC 62.265 66.667 5.01 0.00 43.14 4.79
1448 3137 3.382832 CCACCGTCCGAAGCTCCT 61.383 66.667 0.00 0.00 0.00 3.69
1455 3144 1.021920 GTCCGAAGCTCCTTCTTGCC 61.022 60.000 3.77 0.00 38.24 4.52
1520 3209 0.107654 CCGCCTCCCTTCTTGGTAAG 60.108 60.000 0.00 0.00 0.00 2.34
1707 3417 0.107456 CCACAGACAGTTGGAGCACT 59.893 55.000 0.00 0.00 0.00 4.40
1853 3569 1.709147 GCCACGGCACATGTCTCATC 61.709 60.000 2.36 0.00 41.49 2.92
1921 3638 1.070914 TGCCGTTTCCATGTGTCACTA 59.929 47.619 4.27 0.00 0.00 2.74
1950 3667 5.910614 AGAAAGCTTTCTTTTGTGAGCATT 58.089 33.333 31.56 9.11 44.70 3.56
1997 3714 1.820581 CCAAGCAAGGGCATGATGG 59.179 57.895 0.00 0.00 41.08 3.51
2099 3816 1.200252 CCTCGTCTTCTTCGCAGAGAA 59.800 52.381 0.00 0.00 38.43 2.87
2100 3817 2.351835 CCTCGTCTTCTTCGCAGAGAAA 60.352 50.000 1.06 0.00 38.57 2.52
2187 3907 1.939838 GCGTTGGTCGATCTCAAAGGT 60.940 52.381 0.00 0.00 42.86 3.50
2204 3924 2.800250 AGGTGAGGAAAAGAAGCATGG 58.200 47.619 0.00 0.00 0.00 3.66
2445 4195 1.398390 GAGGTGCTGGAATAAACGCAG 59.602 52.381 0.00 0.00 32.38 5.18
2446 4196 0.451783 GGTGCTGGAATAAACGCAGG 59.548 55.000 0.00 0.00 32.38 4.85
2584 4733 6.847400 TGTTGTTTTTCGTCTGAAATTCTGA 58.153 32.000 0.00 0.00 43.32 3.27
2688 5196 5.536538 AGTGTCTCACTGTACTTTCATCTGA 59.463 40.000 1.44 0.00 43.63 3.27
2690 5198 6.144724 GTGTCTCACTGTACTTTCATCTGAAC 59.855 42.308 0.00 0.00 33.13 3.18
2691 5199 5.635700 GTCTCACTGTACTTTCATCTGAACC 59.364 44.000 0.00 0.00 33.13 3.62
2692 5200 5.304357 TCTCACTGTACTTTCATCTGAACCA 59.696 40.000 0.00 0.00 33.13 3.67
2742 6514 8.245491 TCATGATTGATTTGAGTAATGTGGTTG 58.755 33.333 0.00 0.00 0.00 3.77
2756 6528 2.288091 TGTGGTTGAATTTGACATGCCG 60.288 45.455 0.00 0.00 0.00 5.69
2761 6533 4.096382 GGTTGAATTTGACATGCCGACTAT 59.904 41.667 0.00 0.00 0.00 2.12
2762 6534 4.880886 TGAATTTGACATGCCGACTATG 57.119 40.909 0.00 0.00 0.00 2.23
2763 6535 3.065233 TGAATTTGACATGCCGACTATGC 59.935 43.478 0.00 0.00 0.00 3.14
2798 6570 2.903547 CGGGTTGTTTGGCCGTGAG 61.904 63.158 0.00 0.00 0.00 3.51
2802 6574 0.248866 GTTGTTTGGCCGTGAGTTGG 60.249 55.000 0.00 0.00 0.00 3.77
2816 6588 3.763897 GTGAGTTGGCCAAAATATGACCT 59.236 43.478 22.47 10.46 31.72 3.85
2821 6593 4.853468 TGGCCAAAATATGACCTGAGTA 57.147 40.909 0.61 0.00 31.72 2.59
2831 6603 4.872357 CCTGAGTAGGCATGCCAG 57.128 61.111 37.18 24.49 37.25 4.85
2832 6604 1.910722 CCTGAGTAGGCATGCCAGT 59.089 57.895 37.18 24.65 37.25 4.00
2834 6606 1.486310 CCTGAGTAGGCATGCCAGTAA 59.514 52.381 37.18 17.98 37.25 2.24
2837 6609 3.041211 TGAGTAGGCATGCCAGTAATCT 58.959 45.455 37.18 23.10 38.92 2.40
2851 6623 5.106157 GCCAGTAATCTTAACACAAGCACAT 60.106 40.000 0.00 0.00 0.00 3.21
2855 6627 6.710295 AGTAATCTTAACACAAGCACATCACA 59.290 34.615 0.00 0.00 0.00 3.58
2874 6646 2.048603 GGCCCAATCTGGTCAGCAC 61.049 63.158 0.00 0.00 35.17 4.40
2913 6685 0.601558 ATGCTTGCAAGTTGAGGCTG 59.398 50.000 26.55 0.06 0.00 4.85
2916 6688 0.386476 CTTGCAAGTTGAGGCTGCAA 59.614 50.000 18.65 8.92 42.24 4.08
2921 6693 4.565531 GTTGAGGCTGCAACATGC 57.434 55.556 18.61 0.00 45.65 4.06
2942 6714 3.608073 GCAAGTGCACTTAAAAATAGGCG 59.392 43.478 30.67 15.56 41.59 5.52
2953 6725 8.073768 CACTTAAAAATAGGCGAAAGAGAACAA 58.926 33.333 0.00 0.00 0.00 2.83
2954 6726 8.793592 ACTTAAAAATAGGCGAAAGAGAACAAT 58.206 29.630 0.00 0.00 0.00 2.71
3013 6785 4.379918 GCAGAAAGAAAGATACCCAGCAAC 60.380 45.833 0.00 0.00 0.00 4.17
3015 6787 5.006386 AGAAAGAAAGATACCCAGCAACTG 58.994 41.667 0.00 0.00 0.00 3.16
3026 6798 2.363359 CCCAGCAACTGAAGCTTTCTTT 59.637 45.455 0.00 0.00 41.14 2.52
3032 6804 4.440663 GCAACTGAAGCTTTCTTTCTGGTT 60.441 41.667 0.00 0.00 31.48 3.67
3038 6810 5.066505 TGAAGCTTTCTTTCTGGTTGTCTTC 59.933 40.000 0.00 0.00 31.48 2.87
3039 6811 4.526970 AGCTTTCTTTCTGGTTGTCTTCA 58.473 39.130 0.00 0.00 0.00 3.02
3062 6834 4.940046 AGTTGATACTGGCAGAGATTGTTG 59.060 41.667 23.66 0.00 31.99 3.33
3064 6836 4.507710 TGATACTGGCAGAGATTGTTGTC 58.492 43.478 23.66 5.18 0.00 3.18
3065 6837 2.936919 ACTGGCAGAGATTGTTGTCA 57.063 45.000 23.66 0.00 0.00 3.58
3066 6838 3.213206 ACTGGCAGAGATTGTTGTCAA 57.787 42.857 23.66 0.00 37.98 3.18
3067 6839 2.880890 ACTGGCAGAGATTGTTGTCAAC 59.119 45.455 23.66 8.86 36.33 3.18
3068 6840 2.880268 CTGGCAGAGATTGTTGTCAACA 59.120 45.455 14.48 14.48 40.21 3.33
3069 6841 2.880268 TGGCAGAGATTGTTGTCAACAG 59.120 45.455 17.49 7.18 43.27 3.16
3084 6862 8.100791 TGTTGTCAACAGTCTATAAGGCTAAAT 58.899 33.333 14.48 0.00 36.25 1.40
3090 6868 9.547753 CAACAGTCTATAAGGCTAAATGTATGT 57.452 33.333 0.00 0.00 0.00 2.29
3106 6884 7.435068 AATGTATGTAAGTTGTCAACAGTCC 57.565 36.000 17.78 3.59 0.00 3.85
3110 6888 8.372459 TGTATGTAAGTTGTCAACAGTCCTAAT 58.628 33.333 17.78 4.90 0.00 1.73
3111 6889 9.216117 GTATGTAAGTTGTCAACAGTCCTAATT 57.784 33.333 17.78 3.54 0.00 1.40
3112 6890 8.691661 ATGTAAGTTGTCAACAGTCCTAATTT 57.308 30.769 17.78 2.88 0.00 1.82
3115 7517 9.447040 GTAAGTTGTCAACAGTCCTAATTTTTC 57.553 33.333 17.78 0.00 0.00 2.29
3119 7521 7.639113 TGTCAACAGTCCTAATTTTTCAGTT 57.361 32.000 0.00 0.00 0.00 3.16
3121 7523 9.179909 TGTCAACAGTCCTAATTTTTCAGTTAA 57.820 29.630 0.00 0.00 0.00 2.01
3155 7557 5.649782 TTTTCTGAAAGATCCAGCATTCC 57.350 39.130 2.75 0.00 46.36 3.01
3156 7558 4.581309 TTCTGAAAGATCCAGCATTCCT 57.419 40.909 0.00 0.00 46.36 3.36
3157 7559 3.882444 TCTGAAAGATCCAGCATTCCTG 58.118 45.455 0.00 0.00 38.67 3.86
3166 7568 1.481871 CAGCATTCCTGGCTTTGGAT 58.518 50.000 0.00 0.00 40.23 3.41
3167 7569 1.829222 CAGCATTCCTGGCTTTGGATT 59.171 47.619 0.00 0.00 40.23 3.01
3168 7570 1.829222 AGCATTCCTGGCTTTGGATTG 59.171 47.619 10.17 10.17 38.81 2.67
3169 7571 1.134610 GCATTCCTGGCTTTGGATTGG 60.135 52.381 13.82 0.00 36.21 3.16
3171 7573 2.925966 TTCCTGGCTTTGGATTGGAT 57.074 45.000 0.00 0.00 33.09 3.41
3173 7575 4.329638 TTCCTGGCTTTGGATTGGATTA 57.670 40.909 0.00 0.00 33.09 1.75
3182 7584 4.989279 TTGGATTGGATTAGCAGAAAGC 57.011 40.909 0.00 0.00 46.19 3.51
3194 7596 1.871039 GCAGAAAGCAACGGTAACAGA 59.129 47.619 0.00 0.00 44.79 3.41
3198 7600 3.942748 AGAAAGCAACGGTAACAGAAACA 59.057 39.130 0.00 0.00 0.00 2.83
3202 7604 3.942748 AGCAACGGTAACAGAAACAGAAA 59.057 39.130 0.00 0.00 0.00 2.52
3206 7608 5.418310 ACGGTAACAGAAACAGAAACATG 57.582 39.130 0.00 0.00 0.00 3.21
3210 7612 3.996150 ACAGAAACAGAAACATGCTGG 57.004 42.857 0.00 0.00 37.69 4.85
3212 7614 2.029649 CAGAAACAGAAACATGCTGGGG 60.030 50.000 0.00 0.00 37.69 4.96
3213 7615 2.158475 AGAAACAGAAACATGCTGGGGA 60.158 45.455 0.00 0.00 37.69 4.81
3214 7616 2.610438 AACAGAAACATGCTGGGGAT 57.390 45.000 0.00 0.00 37.69 3.85
3215 7617 3.737559 AACAGAAACATGCTGGGGATA 57.262 42.857 0.00 0.00 37.69 2.59
3218 7620 1.837439 AGAAACATGCTGGGGATACGA 59.163 47.619 0.00 0.00 37.60 3.43
3219 7621 2.238646 AGAAACATGCTGGGGATACGAA 59.761 45.455 0.00 0.00 37.60 3.85
3220 7622 2.332063 AACATGCTGGGGATACGAAG 57.668 50.000 0.00 0.00 37.60 3.79
3221 7623 1.496060 ACATGCTGGGGATACGAAGA 58.504 50.000 0.00 0.00 37.60 2.87
3222 7624 2.050144 ACATGCTGGGGATACGAAGAT 58.950 47.619 0.00 0.00 37.60 2.40
3223 7625 2.037772 ACATGCTGGGGATACGAAGATC 59.962 50.000 0.00 0.00 37.60 2.75
3225 7627 2.115427 TGCTGGGGATACGAAGATCAA 58.885 47.619 0.00 0.00 37.60 2.57
3229 7631 4.626042 CTGGGGATACGAAGATCAAAGAG 58.374 47.826 0.00 0.00 37.60 2.85
3231 7633 5.205821 TGGGGATACGAAGATCAAAGAGTA 58.794 41.667 0.00 0.00 37.60 2.59
3232 7634 5.659525 TGGGGATACGAAGATCAAAGAGTAA 59.340 40.000 0.00 0.00 37.60 2.24
3233 7635 6.155565 TGGGGATACGAAGATCAAAGAGTAAA 59.844 38.462 0.00 0.00 37.60 2.01
3234 7636 7.046033 GGGGATACGAAGATCAAAGAGTAAAA 58.954 38.462 0.00 0.00 37.60 1.52
3235 7637 7.224949 GGGGATACGAAGATCAAAGAGTAAAAG 59.775 40.741 0.00 0.00 37.60 2.27
3236 7638 7.224949 GGGATACGAAGATCAAAGAGTAAAAGG 59.775 40.741 0.00 0.00 37.60 3.11
3237 7639 7.980099 GGATACGAAGATCAAAGAGTAAAAGGA 59.020 37.037 0.00 0.00 0.00 3.36
3239 7641 9.720769 ATACGAAGATCAAAGAGTAAAAGGAAA 57.279 29.630 0.00 0.00 0.00 3.13
3240 7642 8.089115 ACGAAGATCAAAGAGTAAAAGGAAAG 57.911 34.615 0.00 0.00 0.00 2.62
3251 7653 9.534565 AAGAGTAAAAGGAAAGAAAAATTCAGC 57.465 29.630 0.00 0.00 0.00 4.26
3252 7654 8.144478 AGAGTAAAAGGAAAGAAAAATTCAGCC 58.856 33.333 0.00 0.00 0.00 4.85
3253 7655 7.217200 AGTAAAAGGAAAGAAAAATTCAGCCC 58.783 34.615 0.00 0.00 0.00 5.19
3255 7657 6.994421 AAAGGAAAGAAAAATTCAGCCCTA 57.006 33.333 0.00 0.00 0.00 3.53
3256 7658 6.994421 AAGGAAAGAAAAATTCAGCCCTAA 57.006 33.333 0.00 0.00 0.00 2.69
3257 7659 6.994421 AGGAAAGAAAAATTCAGCCCTAAA 57.006 33.333 0.00 0.00 0.00 1.85
3258 7660 6.997655 AGGAAAGAAAAATTCAGCCCTAAAG 58.002 36.000 0.00 0.00 0.00 1.85
3259 7661 6.014242 AGGAAAGAAAAATTCAGCCCTAAAGG 60.014 38.462 0.00 0.00 39.47 3.11
3270 7672 2.532250 CCCTAAAGGCTGGGAATGTT 57.468 50.000 2.16 0.00 46.15 2.71
3271 7673 2.102578 CCCTAAAGGCTGGGAATGTTG 58.897 52.381 2.16 0.00 46.15 3.33
3272 7674 2.102578 CCTAAAGGCTGGGAATGTTGG 58.897 52.381 0.00 0.00 0.00 3.77
3273 7675 2.291540 CCTAAAGGCTGGGAATGTTGGA 60.292 50.000 0.00 0.00 0.00 3.53
3275 7677 0.482446 AAGGCTGGGAATGTTGGACA 59.518 50.000 0.00 0.00 0.00 4.02
3277 7679 0.603065 GGCTGGGAATGTTGGACAAC 59.397 55.000 8.19 8.19 41.50 3.32
3285 7687 3.487576 TGTTGGACAACACTCCCAC 57.512 52.632 13.42 0.00 45.42 4.61
3286 7688 0.462937 TGTTGGACAACACTCCCACG 60.463 55.000 13.42 0.00 45.42 4.94
3287 7689 1.147376 TTGGACAACACTCCCACGG 59.853 57.895 0.00 0.00 0.00 4.94
3288 7690 1.628238 TTGGACAACACTCCCACGGT 61.628 55.000 0.00 0.00 0.00 4.83
3289 7691 1.147600 GGACAACACTCCCACGGTT 59.852 57.895 0.00 0.00 0.00 4.44
3290 7692 1.164041 GGACAACACTCCCACGGTTG 61.164 60.000 0.00 0.00 45.52 3.77
3292 7694 0.463116 ACAACACTCCCACGGTTGAC 60.463 55.000 10.35 0.00 43.41 3.18
3293 7695 1.147600 AACACTCCCACGGTTGACC 59.852 57.895 0.00 0.00 0.00 4.02
3294 7696 2.032071 CACTCCCACGGTTGACCC 59.968 66.667 0.00 0.00 0.00 4.46
3295 7697 3.246880 ACTCCCACGGTTGACCCC 61.247 66.667 0.00 0.00 0.00 4.95
3296 7698 4.029809 CTCCCACGGTTGACCCCC 62.030 72.222 0.00 0.00 0.00 5.40
3297 7699 4.902258 TCCCACGGTTGACCCCCA 62.902 66.667 0.00 0.00 0.00 4.96
3298 7700 3.892162 CCCACGGTTGACCCCCAA 61.892 66.667 0.00 0.00 0.00 4.12
3299 7701 2.196229 CCACGGTTGACCCCCAAA 59.804 61.111 0.00 0.00 36.36 3.28
3302 7704 1.152631 ACGGTTGACCCCCAAAAGG 60.153 57.895 0.00 0.00 36.36 3.11
3303 7705 1.152631 CGGTTGACCCCCAAAAGGT 60.153 57.895 0.00 0.00 41.50 3.50
3315 7717 3.923017 CCAAAAGGTGGCTCTAAACAG 57.077 47.619 0.00 0.00 41.72 3.16
3316 7718 3.222603 CCAAAAGGTGGCTCTAAACAGT 58.777 45.455 0.00 0.00 41.72 3.55
3317 7719 3.636764 CCAAAAGGTGGCTCTAAACAGTT 59.363 43.478 0.00 0.00 41.72 3.16
3319 7721 4.918810 AAAGGTGGCTCTAAACAGTTTG 57.081 40.909 8.93 0.00 0.00 2.93
3320 7722 2.230660 AGGTGGCTCTAAACAGTTTGC 58.769 47.619 8.93 3.65 0.00 3.68
3322 7724 2.287608 GGTGGCTCTAAACAGTTTGCAC 60.288 50.000 8.93 5.23 0.00 4.57
3323 7725 1.953686 TGGCTCTAAACAGTTTGCACC 59.046 47.619 8.93 5.67 0.00 5.01
3324 7726 2.230660 GGCTCTAAACAGTTTGCACCT 58.769 47.619 8.93 0.00 0.00 4.00
3326 7728 2.605580 GCTCTAAACAGTTTGCACCTGC 60.606 50.000 8.93 1.53 42.50 4.85
3327 7729 2.880890 CTCTAAACAGTTTGCACCTGCT 59.119 45.455 8.93 0.00 42.66 4.24
3338 7740 3.758755 TGCACCTGCTATTCTCCATAG 57.241 47.619 0.00 0.00 42.66 2.23
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
51 52 5.626142 TCCACCATAGTTGCTCTTACAAAA 58.374 37.500 0.00 0.00 0.00 2.44
103 104 2.505819 CCCTGTAGCCTCCATGTTAACT 59.494 50.000 7.22 0.00 0.00 2.24
120 121 4.669197 CGCAAGAGTAAATTTTCGTCCCTG 60.669 45.833 0.00 0.00 43.02 4.45
125 126 5.411669 AGAATCCGCAAGAGTAAATTTTCGT 59.588 36.000 0.00 0.00 43.02 3.85
184 185 1.444933 TCCTCTTTTTGGAGCTCCCA 58.555 50.000 29.95 17.28 44.93 4.37
228 229 4.471747 TGAAGTGCACTATATTACACCCCA 59.528 41.667 22.01 0.00 33.46 4.96
293 294 2.041081 TCGGGAGTGGGTGAATCAAAAT 59.959 45.455 0.00 0.00 0.00 1.82
297 298 0.544357 ACTCGGGAGTGGGTGAATCA 60.544 55.000 0.00 0.00 40.75 2.57
299 300 1.265454 GGACTCGGGAGTGGGTGAAT 61.265 60.000 5.98 0.00 42.66 2.57
304 314 2.283966 AGTGGACTCGGGAGTGGG 60.284 66.667 5.98 0.00 42.66 4.61
370 380 2.878406 TGGCTTGCTAGTGAGTTTCAAC 59.122 45.455 0.00 0.00 0.00 3.18
371 381 3.207265 TGGCTTGCTAGTGAGTTTCAA 57.793 42.857 0.00 0.00 0.00 2.69
399 409 6.861065 GCTTAGTAGCTTACCATGCAAATA 57.139 37.500 0.00 0.00 44.27 1.40
435 445 0.391597 GGGTGAGTTGGAGAACACGA 59.608 55.000 0.00 0.00 34.17 4.35
451 461 1.000739 TACCTTCATCGACCGGGGT 59.999 57.895 6.32 2.76 0.00 4.95
524 534 2.831742 CCAATGCCAGAGCGCCAT 60.832 61.111 2.29 0.00 44.31 4.40
565 575 2.435938 CACGCTACACCGGCCAAT 60.436 61.111 0.00 0.00 0.00 3.16
592 602 1.964373 CACGCTACACCCACCAACC 60.964 63.158 0.00 0.00 0.00 3.77
595 605 4.323477 GCCACGCTACACCCACCA 62.323 66.667 0.00 0.00 0.00 4.17
615 625 3.443045 GCCACCGGCCATTCACAG 61.443 66.667 0.00 0.00 44.06 3.66
625 635 0.607620 ATGGAAATGTTTGCCACCGG 59.392 50.000 0.00 0.00 33.93 5.28
662 2263 2.299867 GCATCACCACCCACATCTTTTT 59.700 45.455 0.00 0.00 0.00 1.94
702 2310 1.859841 TAGGTGGCGAGGACAGGAGA 61.860 60.000 0.00 0.00 0.00 3.71
739 2353 3.066814 GGGTCGTGGTCGGCTACT 61.067 66.667 0.99 0.00 41.76 2.57
742 2357 4.309950 GTTGGGTCGTGGTCGGCT 62.310 66.667 0.00 0.00 41.76 5.52
767 2382 3.984749 GATCGGGGAGAGCGGCTC 61.985 72.222 22.13 22.13 43.17 4.70
1060 2695 2.887568 CGGCAAGCGCTCGAAGAT 60.888 61.111 12.06 0.00 38.60 2.40
1191 2826 3.060020 GATGCCGACGAGGACCGAA 62.060 63.158 0.00 0.00 45.00 4.30
1226 2861 0.030773 CTGAATCGCGCTAGGCACTA 59.969 55.000 5.56 0.00 43.84 2.74
1227 2862 1.227089 CTGAATCGCGCTAGGCACT 60.227 57.895 5.56 0.00 43.84 4.40
1229 2864 2.586079 GCTGAATCGCGCTAGGCA 60.586 61.111 5.56 0.00 43.84 4.75
1231 2866 2.663188 GGGCTGAATCGCGCTAGG 60.663 66.667 5.56 0.00 39.48 3.02
1249 2890 3.243907 GGACATTCGGGTATCCTTCTGAG 60.244 52.174 0.00 0.00 0.00 3.35
1251 2892 2.700897 AGGACATTCGGGTATCCTTCTG 59.299 50.000 0.00 0.00 38.47 3.02
1266 2907 3.659183 CTCAAGAATTGGGGAGGACAT 57.341 47.619 0.00 0.00 44.78 3.06
1299 2940 4.778143 AACGTCAGATGGGCGCCC 62.778 66.667 39.40 39.40 0.00 6.13
1397 3077 1.533711 GGGGTAGGCAGCATGATGT 59.466 57.895 13.32 0.00 39.69 3.06
1433 3113 1.186267 AAGAAGGAGCTTCGGACGGT 61.186 55.000 0.00 0.00 44.34 4.83
1436 3116 1.021920 GGCAAGAAGGAGCTTCGGAC 61.022 60.000 0.00 0.00 44.34 4.79
1438 3118 2.103042 CGGCAAGAAGGAGCTTCGG 61.103 63.158 0.00 0.00 44.34 4.30
1439 3119 1.374758 ACGGCAAGAAGGAGCTTCG 60.375 57.895 0.00 0.00 44.34 3.79
1707 3417 2.531428 TGGTGGCACCTGATGGGA 60.531 61.111 34.69 12.37 39.58 4.37
1853 3569 1.668419 GTTGATGGGGATCTTGGTCG 58.332 55.000 0.00 0.00 0.00 4.79
1950 3667 2.620585 CTCTAGCACACCATCATCTCGA 59.379 50.000 0.00 0.00 0.00 4.04
1992 3709 0.955905 CGCCATGATCATTGCCATCA 59.044 50.000 22.26 0.00 34.74 3.07
1997 3714 2.050714 CGCCGCCATGATCATTGC 60.051 61.111 19.31 19.31 0.00 3.56
2099 3816 0.674895 GACGAGCATGGCACCTCTTT 60.675 55.000 13.19 2.75 0.00 2.52
2100 3817 1.078848 GACGAGCATGGCACCTCTT 60.079 57.895 13.19 5.76 0.00 2.85
2187 3907 2.165167 CTGCCATGCTTCTTTTCCTCA 58.835 47.619 0.00 0.00 0.00 3.86
2195 3915 2.923634 GATGCCCCTGCCATGCTTCT 62.924 60.000 0.00 0.00 36.33 2.85
2197 3917 2.443390 GATGCCCCTGCCATGCTT 60.443 61.111 0.00 0.00 36.33 3.91
2445 4195 4.823989 AGCTGTTATTCCAGTGCATTATCC 59.176 41.667 0.00 0.00 34.84 2.59
2446 4196 5.528690 TCAGCTGTTATTCCAGTGCATTATC 59.471 40.000 14.67 0.00 34.84 1.75
2546 4319 9.198837 ACGAAAAACAACATTACAGAAAGTTTT 57.801 25.926 0.00 0.00 38.79 2.43
2558 4331 7.973388 TCAGAATTTCAGACGAAAAACAACATT 59.027 29.630 0.00 0.00 44.12 2.71
2602 5106 3.258872 ACACATGGCAGTTGCAATTACAT 59.741 39.130 0.59 3.96 44.36 2.29
2603 5107 2.627221 ACACATGGCAGTTGCAATTACA 59.373 40.909 0.59 1.41 44.36 2.41
2604 5108 3.302365 ACACATGGCAGTTGCAATTAC 57.698 42.857 0.59 0.00 44.36 1.89
2606 5110 2.914695 AACACATGGCAGTTGCAATT 57.085 40.000 0.59 0.00 44.36 2.32
2608 5112 2.093816 TGAAAACACATGGCAGTTGCAA 60.094 40.909 6.43 0.00 44.36 4.08
2610 5114 1.860326 GTGAAAACACATGGCAGTTGC 59.140 47.619 0.00 0.00 41.14 4.17
2634 5138 6.625362 TGCATTTCTAGCCTAGATAGATTCG 58.375 40.000 1.50 0.00 30.50 3.34
2723 6495 8.637099 TCAAATTCAACCACATTACTCAAATCA 58.363 29.630 0.00 0.00 0.00 2.57
2732 6504 5.477510 GGCATGTCAAATTCAACCACATTA 58.522 37.500 0.00 0.00 0.00 1.90
2742 6514 3.065233 TGCATAGTCGGCATGTCAAATTC 59.935 43.478 0.00 0.00 36.11 2.17
2756 6528 4.493220 GCAGACAAAGATCGTTGCATAGTC 60.493 45.833 19.55 10.26 31.29 2.59
2761 6533 0.874390 GGCAGACAAAGATCGTTGCA 59.126 50.000 19.55 0.00 33.42 4.08
2762 6534 0.179215 CGGCAGACAAAGATCGTTGC 60.179 55.000 19.55 12.84 31.29 4.17
2763 6535 0.443869 CCGGCAGACAAAGATCGTTG 59.556 55.000 18.27 18.27 34.52 4.10
2802 6574 3.565902 GCCTACTCAGGTCATATTTTGGC 59.434 47.826 0.00 0.00 44.68 4.52
2816 6588 3.041211 AGATTACTGGCATGCCTACTCA 58.959 45.455 35.53 15.74 36.94 3.41
2821 6593 3.947834 GTGTTAAGATTACTGGCATGCCT 59.052 43.478 35.53 20.42 36.94 4.75
2831 6603 6.898041 TGTGATGTGCTTGTGTTAAGATTAC 58.102 36.000 0.00 0.00 0.00 1.89
2832 6604 6.149308 CCTGTGATGTGCTTGTGTTAAGATTA 59.851 38.462 0.00 0.00 0.00 1.75
2834 6606 4.456911 CCTGTGATGTGCTTGTGTTAAGAT 59.543 41.667 0.00 0.00 0.00 2.40
2837 6609 2.293122 GCCTGTGATGTGCTTGTGTTAA 59.707 45.455 0.00 0.00 0.00 2.01
2851 6623 1.685224 GACCAGATTGGGCCTGTGA 59.315 57.895 4.53 0.00 40.64 3.58
2890 6662 0.455633 CTCAACTTGCAAGCATCGCC 60.456 55.000 26.27 0.00 0.00 5.54
2892 6664 0.455633 GCCTCAACTTGCAAGCATCG 60.456 55.000 26.27 11.96 0.00 3.84
2921 6693 5.041951 TCGCCTATTTTTAAGTGCACTTG 57.958 39.130 36.50 20.67 37.40 3.16
2926 6698 6.178239 TCTCTTTCGCCTATTTTTAAGTGC 57.822 37.500 0.00 0.00 0.00 4.40
2936 6708 8.008513 TCTACTAATTGTTCTCTTTCGCCTAT 57.991 34.615 0.00 0.00 0.00 2.57
2939 6711 6.590677 AGTTCTACTAATTGTTCTCTTTCGCC 59.409 38.462 0.00 0.00 0.00 5.54
3001 6773 2.409948 AGCTTCAGTTGCTGGGTATC 57.590 50.000 0.00 0.00 39.56 2.24
3013 6785 4.578105 AGACAACCAGAAAGAAAGCTTCAG 59.422 41.667 0.00 0.00 31.82 3.02
3015 6787 5.066505 TGAAGACAACCAGAAAGAAAGCTTC 59.933 40.000 0.00 0.00 31.82 3.86
3026 6798 5.808366 AGTATCAACTGAAGACAACCAGA 57.192 39.130 0.00 0.00 33.57 3.86
3039 6811 4.833478 ACAATCTCTGCCAGTATCAACT 57.167 40.909 0.00 0.00 35.91 3.16
3053 6825 7.201565 GCCTTATAGACTGTTGACAACAATCTC 60.202 40.741 29.71 19.22 43.83 2.75
3059 6831 7.900782 TTTAGCCTTATAGACTGTTGACAAC 57.099 36.000 11.54 11.54 0.00 3.32
3062 6834 9.765795 ATACATTTAGCCTTATAGACTGTTGAC 57.234 33.333 0.00 0.00 0.00 3.18
3064 6836 9.547753 ACATACATTTAGCCTTATAGACTGTTG 57.452 33.333 0.00 0.00 0.00 3.33
3084 6862 6.169557 AGGACTGTTGACAACTTACATACA 57.830 37.500 18.73 0.00 0.00 2.29
3090 6868 9.179909 TGAAAAATTAGGACTGTTGACAACTTA 57.820 29.630 18.73 0.00 0.00 2.24
3134 7536 4.703575 CAGGAATGCTGGATCTTTCAGAAA 59.296 41.667 0.00 0.00 34.36 2.52
3136 7538 3.371273 CCAGGAATGCTGGATCTTTCAGA 60.371 47.826 16.27 0.00 44.39 3.27
3137 7539 2.950309 CCAGGAATGCTGGATCTTTCAG 59.050 50.000 16.27 0.00 44.39 3.02
3139 7541 1.680207 GCCAGGAATGCTGGATCTTTC 59.320 52.381 25.31 1.31 44.39 2.62
3142 7544 0.924823 AAGCCAGGAATGCTGGATCT 59.075 50.000 25.31 10.01 44.39 2.75
3144 7546 1.481871 CAAAGCCAGGAATGCTGGAT 58.518 50.000 25.31 16.40 44.39 3.41
3146 7548 0.612732 TCCAAAGCCAGGAATGCTGG 60.613 55.000 16.96 16.96 44.44 4.85
3149 7551 1.134610 CCAATCCAAAGCCAGGAATGC 60.135 52.381 0.00 0.00 38.93 3.56
3152 7554 2.925966 ATCCAATCCAAAGCCAGGAA 57.074 45.000 0.00 0.00 38.93 3.36
3154 7556 2.363359 GCTAATCCAATCCAAAGCCAGG 59.637 50.000 0.00 0.00 0.00 4.45
3155 7557 3.025978 TGCTAATCCAATCCAAAGCCAG 58.974 45.455 0.00 0.00 0.00 4.85
3156 7558 3.025978 CTGCTAATCCAATCCAAAGCCA 58.974 45.455 0.00 0.00 0.00 4.75
3157 7559 3.290710 TCTGCTAATCCAATCCAAAGCC 58.709 45.455 0.00 0.00 0.00 4.35
3158 7560 4.989279 TTCTGCTAATCCAATCCAAAGC 57.011 40.909 0.00 0.00 0.00 3.51
3159 7561 5.105635 TGCTTTCTGCTAATCCAATCCAAAG 60.106 40.000 0.00 0.00 43.37 2.77
3160 7562 4.771577 TGCTTTCTGCTAATCCAATCCAAA 59.228 37.500 0.00 0.00 43.37 3.28
3161 7563 4.343231 TGCTTTCTGCTAATCCAATCCAA 58.657 39.130 0.00 0.00 43.37 3.53
3162 7564 3.966979 TGCTTTCTGCTAATCCAATCCA 58.033 40.909 0.00 0.00 43.37 3.41
3163 7565 4.676546 GTTGCTTTCTGCTAATCCAATCC 58.323 43.478 0.00 0.00 43.37 3.01
3164 7566 4.346129 CGTTGCTTTCTGCTAATCCAATC 58.654 43.478 0.00 0.00 43.37 2.67
3166 7568 2.487762 CCGTTGCTTTCTGCTAATCCAA 59.512 45.455 0.00 0.00 43.37 3.53
3167 7569 2.083774 CCGTTGCTTTCTGCTAATCCA 58.916 47.619 0.00 0.00 43.37 3.41
3168 7570 2.084546 ACCGTTGCTTTCTGCTAATCC 58.915 47.619 0.00 0.00 43.37 3.01
3169 7571 4.153475 TGTTACCGTTGCTTTCTGCTAATC 59.847 41.667 0.00 0.00 43.37 1.75
3171 7573 3.468770 TGTTACCGTTGCTTTCTGCTAA 58.531 40.909 0.00 0.00 43.37 3.09
3173 7575 1.873591 CTGTTACCGTTGCTTTCTGCT 59.126 47.619 0.00 0.00 43.37 4.24
3182 7584 5.224562 TGTTTCTGTTTCTGTTACCGTTG 57.775 39.130 0.00 0.00 0.00 4.10
3185 7587 4.024048 AGCATGTTTCTGTTTCTGTTACCG 60.024 41.667 0.00 0.00 0.00 4.02
3187 7589 5.215160 CCAGCATGTTTCTGTTTCTGTTAC 58.785 41.667 0.00 0.00 0.00 2.50
3188 7590 4.278170 CCCAGCATGTTTCTGTTTCTGTTA 59.722 41.667 0.00 0.00 0.00 2.41
3189 7591 3.068590 CCCAGCATGTTTCTGTTTCTGTT 59.931 43.478 0.00 0.00 0.00 3.16
3194 7596 2.380064 TCCCCAGCATGTTTCTGTTT 57.620 45.000 0.00 0.00 0.00 2.83
3198 7600 1.837439 TCGTATCCCCAGCATGTTTCT 59.163 47.619 0.00 0.00 0.00 2.52
3202 7604 1.496060 TCTTCGTATCCCCAGCATGT 58.504 50.000 0.00 0.00 0.00 3.21
3206 7608 2.910688 TTGATCTTCGTATCCCCAGC 57.089 50.000 0.00 0.00 0.00 4.85
3210 7612 7.224949 CCTTTTACTCTTTGATCTTCGTATCCC 59.775 40.741 0.00 0.00 0.00 3.85
3212 7614 8.928270 TCCTTTTACTCTTTGATCTTCGTATC 57.072 34.615 0.00 0.00 0.00 2.24
3213 7615 9.720769 TTTCCTTTTACTCTTTGATCTTCGTAT 57.279 29.630 0.00 0.00 0.00 3.06
3214 7616 9.204570 CTTTCCTTTTACTCTTTGATCTTCGTA 57.795 33.333 0.00 0.00 0.00 3.43
3215 7617 7.931948 TCTTTCCTTTTACTCTTTGATCTTCGT 59.068 33.333 0.00 0.00 0.00 3.85
3225 7627 9.534565 GCTGAATTTTTCTTTCCTTTTACTCTT 57.465 29.630 0.00 0.00 0.00 2.85
3229 7631 7.217200 AGGGCTGAATTTTTCTTTCCTTTTAC 58.783 34.615 0.00 0.00 0.00 2.01
3231 7633 6.252599 AGGGCTGAATTTTTCTTTCCTTTT 57.747 33.333 0.00 0.00 0.00 2.27
3232 7634 5.894298 AGGGCTGAATTTTTCTTTCCTTT 57.106 34.783 0.00 0.00 0.00 3.11
3233 7635 6.994421 TTAGGGCTGAATTTTTCTTTCCTT 57.006 33.333 0.00 0.00 0.00 3.36
3234 7636 6.014242 CCTTTAGGGCTGAATTTTTCTTTCCT 60.014 38.462 0.00 0.00 0.00 3.36
3235 7637 6.166279 CCTTTAGGGCTGAATTTTTCTTTCC 58.834 40.000 0.00 0.00 0.00 3.13
3251 7653 2.102578 CAACATTCCCAGCCTTTAGGG 58.897 52.381 0.00 0.00 46.90 3.53
3252 7654 2.102578 CCAACATTCCCAGCCTTTAGG 58.897 52.381 0.00 0.00 38.53 2.69
3253 7655 2.755103 GTCCAACATTCCCAGCCTTTAG 59.245 50.000 0.00 0.00 0.00 1.85
3255 7657 1.133199 TGTCCAACATTCCCAGCCTTT 60.133 47.619 0.00 0.00 0.00 3.11
3256 7658 0.482446 TGTCCAACATTCCCAGCCTT 59.518 50.000 0.00 0.00 0.00 4.35
3257 7659 0.482446 TTGTCCAACATTCCCAGCCT 59.518 50.000 0.00 0.00 0.00 4.58
3258 7660 0.603065 GTTGTCCAACATTCCCAGCC 59.397 55.000 5.32 0.00 40.84 4.85
3259 7661 1.327303 TGTTGTCCAACATTCCCAGC 58.673 50.000 8.71 0.00 45.42 4.85
3268 7670 1.164041 CCGTGGGAGTGTTGTCCAAC 61.164 60.000 3.21 3.21 38.52 3.77
3270 7672 1.628238 AACCGTGGGAGTGTTGTCCA 61.628 55.000 0.00 0.00 38.52 4.02
3271 7673 1.147600 AACCGTGGGAGTGTTGTCC 59.852 57.895 0.00 0.00 35.64 4.02
3272 7674 0.179067 TCAACCGTGGGAGTGTTGTC 60.179 55.000 0.00 0.00 40.13 3.18
3273 7675 0.463116 GTCAACCGTGGGAGTGTTGT 60.463 55.000 0.00 0.00 40.13 3.32
3275 7677 1.147600 GGTCAACCGTGGGAGTGTT 59.852 57.895 0.00 0.00 0.00 3.32
3277 7679 2.032071 GGGTCAACCGTGGGAGTG 59.968 66.667 0.00 0.00 36.71 3.51
3279 7681 4.029809 GGGGGTCAACCGTGGGAG 62.030 72.222 0.00 0.00 41.60 4.30
3281 7683 2.930777 TTTTGGGGGTCAACCGTGGG 62.931 60.000 0.00 0.00 41.60 4.61
3282 7684 1.455959 TTTTGGGGGTCAACCGTGG 60.456 57.895 0.00 0.00 41.60 4.94
3284 7686 1.152631 CCTTTTGGGGGTCAACCGT 60.153 57.895 0.00 0.00 41.60 4.83
3285 7687 1.152631 ACCTTTTGGGGGTCAACCG 60.153 57.895 0.00 0.00 46.08 4.44
3286 7688 2.436521 CACCTTTTGGGGGTCAACC 58.563 57.895 0.00 0.00 46.08 3.77
3296 7698 4.918810 AACTGTTTAGAGCCACCTTTTG 57.081 40.909 0.00 0.00 0.00 2.44
3297 7699 4.441495 GCAAACTGTTTAGAGCCACCTTTT 60.441 41.667 5.31 0.00 0.00 2.27
3298 7700 3.068165 GCAAACTGTTTAGAGCCACCTTT 59.932 43.478 5.31 0.00 0.00 3.11
3299 7701 2.623416 GCAAACTGTTTAGAGCCACCTT 59.377 45.455 5.31 0.00 0.00 3.50
3302 7704 2.287608 GGTGCAAACTGTTTAGAGCCAC 60.288 50.000 5.31 8.12 0.00 5.01
3303 7705 1.953686 GGTGCAAACTGTTTAGAGCCA 59.046 47.619 5.31 0.00 0.00 4.75
3307 7709 2.930950 AGCAGGTGCAAACTGTTTAGA 58.069 42.857 17.84 0.00 45.16 2.10
3308 7710 5.182001 AGAATAGCAGGTGCAAACTGTTTAG 59.818 40.000 17.84 2.35 45.16 1.85
3309 7711 5.070001 AGAATAGCAGGTGCAAACTGTTTA 58.930 37.500 17.84 12.34 45.16 2.01
3312 7714 3.077359 GAGAATAGCAGGTGCAAACTGT 58.923 45.455 17.84 9.53 45.16 3.55
3313 7715 2.421424 GGAGAATAGCAGGTGCAAACTG 59.579 50.000 13.75 13.75 45.16 3.16
3314 7716 2.040278 TGGAGAATAGCAGGTGCAAACT 59.960 45.455 4.48 0.00 45.16 2.66
3315 7717 2.436417 TGGAGAATAGCAGGTGCAAAC 58.564 47.619 4.48 0.00 45.16 2.93
3316 7718 2.877097 TGGAGAATAGCAGGTGCAAA 57.123 45.000 4.48 0.00 45.16 3.68
3317 7719 4.077300 CTATGGAGAATAGCAGGTGCAA 57.923 45.455 4.48 0.00 45.16 4.08


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.