Multiple sequence alignment - TraesCS2B01G441400

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G441400 chr2B 100.000 3035 0 0 1 3035 633574121 633577155 0.000000e+00 5605.0
1 TraesCS2B01G441400 chr2B 95.900 878 32 3 1 874 666199786 666198909 0.000000e+00 1419.0
2 TraesCS2B01G441400 chr2B 94.292 876 43 6 1 873 246255613 246256484 0.000000e+00 1334.0
3 TraesCS2B01G441400 chr2B 95.768 827 34 1 1 826 94812358 94811532 0.000000e+00 1332.0
4 TraesCS2B01G441400 chr2B 83.551 1453 197 23 1210 2644 632988161 632989589 0.000000e+00 1321.0
5 TraesCS2B01G441400 chr2B 81.766 1404 235 16 1237 2628 633584802 633586196 0.000000e+00 1155.0
6 TraesCS2B01G441400 chr2B 92.221 797 43 3 1796 2592 633254582 633255359 0.000000e+00 1110.0
7 TraesCS2B01G441400 chr2B 90.032 632 40 8 965 1594 633240519 633241129 0.000000e+00 797.0
8 TraesCS2B01G441400 chr2B 93.506 154 8 1 2676 2827 633269026 633269179 8.460000e-56 228.0
9 TraesCS2B01G441400 chr2B 83.537 164 25 1 2803 2964 594691933 594692096 5.240000e-33 152.0
10 TraesCS2B01G441400 chr2B 94.737 95 4 1 2941 3035 633269178 633269271 2.440000e-31 147.0
11 TraesCS2B01G441400 chr2B 96.774 62 2 0 2621 2682 633255361 633255422 1.490000e-18 104.0
12 TraesCS2B01G441400 chr2D 93.238 1819 70 14 1012 2827 533658098 533659866 0.000000e+00 2628.0
13 TraesCS2B01G441400 chr2D 84.075 1595 206 26 1033 2610 533165093 533166656 0.000000e+00 1495.0
14 TraesCS2B01G441400 chr2D 85.412 1467 174 17 1209 2648 533251686 533253139 0.000000e+00 1487.0
15 TraesCS2B01G441400 chr2D 82.431 1349 199 21 1327 2648 533668540 533669877 0.000000e+00 1144.0
16 TraesCS2B01G441400 chr2D 82.349 1337 202 21 1330 2649 533831342 533832661 0.000000e+00 1131.0
17 TraesCS2B01G441400 chr2D 81.540 1403 216 24 1237 2609 533662417 533663806 0.000000e+00 1116.0
18 TraesCS2B01G441400 chr2D 90.226 133 3 1 905 1027 533657948 533658080 6.730000e-37 165.0
19 TraesCS2B01G441400 chr2D 95.699 93 4 0 2941 3033 533659865 533659957 1.880000e-32 150.0
20 TraesCS2B01G441400 chr2D 86.822 129 9 4 1032 1159 534135005 534135126 1.470000e-28 137.0
21 TraesCS2B01G441400 chr2D 93.902 82 2 1 1033 1111 533251560 533251641 1.480000e-23 121.0
22 TraesCS2B01G441400 chr2D 94.203 69 4 0 1137 1205 533251633 533251701 4.140000e-19 106.0
23 TraesCS2B01G441400 chrUn 95.684 1367 56 3 1333 2698 26138820 26140184 0.000000e+00 2194.0
24 TraesCS2B01G441400 chrUn 88.060 335 18 2 967 1298 26119812 26120127 7.940000e-101 377.0
25 TraesCS2B01G441400 chrUn 93.069 101 7 0 2727 2827 26140183 26140283 6.780000e-32 148.0
26 TraesCS2B01G441400 chrUn 94.737 95 5 0 2941 3035 26140282 26140376 6.780000e-32 148.0
27 TraesCS2B01G441400 chr2A 83.973 1641 199 26 1033 2648 677545951 677547552 0.000000e+00 1515.0
28 TraesCS2B01G441400 chr5B 96.457 875 30 1 1 874 495438862 495437988 0.000000e+00 1443.0
29 TraesCS2B01G441400 chr5B 95.434 876 36 3 1 874 33860905 33860032 0.000000e+00 1393.0
30 TraesCS2B01G441400 chr5B 94.635 876 44 2 1 875 688710605 688709732 0.000000e+00 1354.0
31 TraesCS2B01G441400 chr5B 94.890 861 40 3 1 860 73067474 73066617 0.000000e+00 1343.0
32 TraesCS2B01G441400 chr7B 95.657 875 37 1 1 874 579356391 579357265 0.000000e+00 1404.0
33 TraesCS2B01G441400 chr7B 81.410 156 25 2 1022 1177 26034750 26034599 1.140000e-24 124.0
34 TraesCS2B01G441400 chr7B 80.000 95 16 3 2941 3034 564178384 564178292 1.950000e-07 67.6
35 TraesCS2B01G441400 chr6B 94.125 851 46 3 1 849 131805977 131805129 0.000000e+00 1291.0
36 TraesCS2B01G441400 chr6B 92.157 51 4 0 2985 3035 705861855 705861905 4.200000e-09 73.1
37 TraesCS2B01G441400 chr6B 80.583 103 12 2 2941 3035 716308658 716308760 4.200000e-09 73.1
38 TraesCS2B01G441400 chr7A 77.948 916 141 38 1625 2515 81929102 81928223 1.610000e-142 516.0
39 TraesCS2B01G441400 chr7A 94.118 119 7 0 2825 2943 236349296 236349178 6.680000e-42 182.0
40 TraesCS2B01G441400 chr3B 85.638 188 26 1 2803 2990 61536191 61536377 2.390000e-46 196.0
41 TraesCS2B01G441400 chr3B 94.872 117 6 0 2826 2942 153651869 153651753 1.860000e-42 183.0
42 TraesCS2B01G441400 chr3B 84.530 181 25 3 2803 2982 617435481 617435659 3.110000e-40 176.0
43 TraesCS2B01G441400 chr3B 82.540 189 32 1 2802 2990 747515729 747515542 6.730000e-37 165.0
44 TraesCS2B01G441400 chr3B 97.674 43 1 0 2991 3033 576638019 576637977 1.170000e-09 75.0
45 TraesCS2B01G441400 chr4B 94.915 118 6 0 2825 2942 653049560 653049677 5.170000e-43 185.0
46 TraesCS2B01G441400 chr6D 94.872 117 6 0 2826 2942 420763810 420763926 1.860000e-42 183.0
47 TraesCS2B01G441400 chr4A 94.167 120 7 0 2823 2942 646986472 646986591 1.860000e-42 183.0
48 TraesCS2B01G441400 chr5D 86.207 87 8 2 2941 3024 42566020 42566105 1.160000e-14 91.6
49 TraesCS2B01G441400 chr5D 82.609 92 7 6 2941 3024 530055399 530055309 4.200000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G441400 chr2B 633574121 633577155 3034 False 5605.000000 5605 100.000000 1 3035 1 chr2B.!!$F5 3034
1 TraesCS2B01G441400 chr2B 666198909 666199786 877 True 1419.000000 1419 95.900000 1 874 1 chr2B.!!$R2 873
2 TraesCS2B01G441400 chr2B 246255613 246256484 871 False 1334.000000 1334 94.292000 1 873 1 chr2B.!!$F1 872
3 TraesCS2B01G441400 chr2B 94811532 94812358 826 True 1332.000000 1332 95.768000 1 826 1 chr2B.!!$R1 825
4 TraesCS2B01G441400 chr2B 632988161 632989589 1428 False 1321.000000 1321 83.551000 1210 2644 1 chr2B.!!$F3 1434
5 TraesCS2B01G441400 chr2B 633584802 633586196 1394 False 1155.000000 1155 81.766000 1237 2628 1 chr2B.!!$F6 1391
6 TraesCS2B01G441400 chr2B 633240519 633241129 610 False 797.000000 797 90.032000 965 1594 1 chr2B.!!$F4 629
7 TraesCS2B01G441400 chr2B 633254582 633255422 840 False 607.000000 1110 94.497500 1796 2682 2 chr2B.!!$F7 886
8 TraesCS2B01G441400 chr2D 533165093 533166656 1563 False 1495.000000 1495 84.075000 1033 2610 1 chr2D.!!$F1 1577
9 TraesCS2B01G441400 chr2D 533668540 533669877 1337 False 1144.000000 1144 82.431000 1327 2648 1 chr2D.!!$F2 1321
10 TraesCS2B01G441400 chr2D 533831342 533832661 1319 False 1131.000000 1131 82.349000 1330 2649 1 chr2D.!!$F3 1319
11 TraesCS2B01G441400 chr2D 533657948 533663806 5858 False 1014.750000 2628 90.175750 905 3033 4 chr2D.!!$F6 2128
12 TraesCS2B01G441400 chr2D 533251560 533253139 1579 False 571.333333 1487 91.172333 1033 2648 3 chr2D.!!$F5 1615
13 TraesCS2B01G441400 chrUn 26138820 26140376 1556 False 830.000000 2194 94.496667 1333 3035 3 chrUn.!!$F2 1702
14 TraesCS2B01G441400 chr2A 677545951 677547552 1601 False 1515.000000 1515 83.973000 1033 2648 1 chr2A.!!$F1 1615
15 TraesCS2B01G441400 chr5B 495437988 495438862 874 True 1443.000000 1443 96.457000 1 874 1 chr5B.!!$R3 873
16 TraesCS2B01G441400 chr5B 33860032 33860905 873 True 1393.000000 1393 95.434000 1 874 1 chr5B.!!$R1 873
17 TraesCS2B01G441400 chr5B 688709732 688710605 873 True 1354.000000 1354 94.635000 1 875 1 chr5B.!!$R4 874
18 TraesCS2B01G441400 chr5B 73066617 73067474 857 True 1343.000000 1343 94.890000 1 860 1 chr5B.!!$R2 859
19 TraesCS2B01G441400 chr7B 579356391 579357265 874 False 1404.000000 1404 95.657000 1 874 1 chr7B.!!$F1 873
20 TraesCS2B01G441400 chr6B 131805129 131805977 848 True 1291.000000 1291 94.125000 1 849 1 chr6B.!!$R1 848
21 TraesCS2B01G441400 chr7A 81928223 81929102 879 True 516.000000 516 77.948000 1625 2515 1 chr7A.!!$R1 890

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
901 915 0.105408 GGCCGCTAATCCCGTAGAAA 59.895 55.0 0.0 0.0 0.0 2.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2540 2677 0.723981 GCGCCTACAGAAGAGCAAAG 59.276 55.0 0.0 0.0 0.0 2.77 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
316 320 7.542130 GCATTCAAAAGGAGTTCATCGTATTTT 59.458 33.333 0.00 0.00 0.00 1.82
394 401 9.906660 TTCAGTGTGTATTAAAAATGTTCATCC 57.093 29.630 0.00 0.00 0.00 3.51
667 677 6.057627 TGTTTATTTAAACTTTCGCGGTGA 57.942 33.333 6.13 0.00 44.36 4.02
742 752 4.508128 GGGCGCGAGGTCGAATCA 62.508 66.667 12.10 0.00 43.02 2.57
748 758 1.801332 CGAGGTCGAATCACGGTCT 59.199 57.895 0.00 0.00 43.02 3.85
749 759 0.170561 CGAGGTCGAATCACGGTCTT 59.829 55.000 0.00 0.00 43.02 3.01
875 889 0.566176 CACCCTATAGGAGTCCCCCA 59.434 60.000 21.07 0.00 39.89 4.96
876 890 1.152271 CACCCTATAGGAGTCCCCCAT 59.848 57.143 21.07 0.00 39.89 4.00
877 891 1.152271 ACCCTATAGGAGTCCCCCATG 59.848 57.143 21.07 1.65 39.89 3.66
878 892 1.437149 CCCTATAGGAGTCCCCCATGA 59.563 57.143 21.07 0.00 38.24 3.07
879 893 2.046447 CCCTATAGGAGTCCCCCATGAT 59.954 54.545 21.07 0.00 38.24 2.45
880 894 3.506787 CCCTATAGGAGTCCCCCATGATT 60.507 52.174 21.07 0.00 38.24 2.57
881 895 4.265307 CCCTATAGGAGTCCCCCATGATTA 60.265 50.000 21.07 0.00 38.24 1.75
882 896 4.965532 CCTATAGGAGTCCCCCATGATTAG 59.034 50.000 14.11 0.00 37.39 1.73
883 897 2.124560 AGGAGTCCCCCATGATTAGG 57.875 55.000 5.25 0.00 34.66 2.69
884 898 0.402121 GGAGTCCCCCATGATTAGGC 59.598 60.000 0.00 0.00 0.00 3.93
885 899 0.402121 GAGTCCCCCATGATTAGGCC 59.598 60.000 0.00 0.00 0.00 5.19
886 900 1.073199 GTCCCCCATGATTAGGCCG 59.927 63.158 0.00 0.00 0.00 6.13
887 901 2.282462 CCCCCATGATTAGGCCGC 60.282 66.667 0.00 0.00 0.00 6.53
888 902 2.833913 CCCCCATGATTAGGCCGCT 61.834 63.158 0.00 0.00 0.00 5.52
889 903 1.488705 CCCCCATGATTAGGCCGCTA 61.489 60.000 0.00 0.00 0.00 4.26
890 904 0.400213 CCCCATGATTAGGCCGCTAA 59.600 55.000 0.00 0.00 0.00 3.09
891 905 1.004745 CCCCATGATTAGGCCGCTAAT 59.995 52.381 0.00 0.00 32.74 1.73
892 906 2.359900 CCCATGATTAGGCCGCTAATC 58.640 52.381 14.88 14.88 43.15 1.75
893 907 2.359900 CCATGATTAGGCCGCTAATCC 58.640 52.381 17.68 5.33 42.55 3.01
894 908 2.359900 CATGATTAGGCCGCTAATCCC 58.640 52.381 17.68 1.06 42.55 3.85
895 909 0.320374 TGATTAGGCCGCTAATCCCG 59.680 55.000 17.68 0.00 42.55 5.14
896 910 0.320697 GATTAGGCCGCTAATCCCGT 59.679 55.000 11.90 0.00 39.27 5.28
897 911 1.547372 GATTAGGCCGCTAATCCCGTA 59.453 52.381 11.90 0.00 39.27 4.02
898 912 0.963962 TTAGGCCGCTAATCCCGTAG 59.036 55.000 0.00 0.00 0.00 3.51
899 913 0.111061 TAGGCCGCTAATCCCGTAGA 59.889 55.000 0.00 0.00 0.00 2.59
900 914 0.757935 AGGCCGCTAATCCCGTAGAA 60.758 55.000 0.00 0.00 0.00 2.10
901 915 0.105408 GGCCGCTAATCCCGTAGAAA 59.895 55.000 0.00 0.00 0.00 2.52
902 916 1.473788 GGCCGCTAATCCCGTAGAAAA 60.474 52.381 0.00 0.00 0.00 2.29
903 917 2.282407 GCCGCTAATCCCGTAGAAAAA 58.718 47.619 0.00 0.00 0.00 1.94
935 949 2.967076 CGGGCCGAACATCATCCG 60.967 66.667 24.41 0.00 0.00 4.18
997 1021 6.262273 TGCTGCTGCCCTAATAAAAACTATAC 59.738 38.462 13.47 0.00 38.71 1.47
1138 1198 2.561885 CACGAAGAGACCGCGAGT 59.438 61.111 8.23 3.14 0.00 4.18
1152 1212 0.037975 GCGAGTTAGTTCCCCGTCAA 60.038 55.000 0.00 0.00 0.00 3.18
1204 1264 7.437713 TCCACTGTACAGATTGATTTATCCT 57.562 36.000 29.30 0.00 0.00 3.24
1205 1265 8.547481 TCCACTGTACAGATTGATTTATCCTA 57.453 34.615 29.30 0.00 0.00 2.94
1206 1266 8.988060 TCCACTGTACAGATTGATTTATCCTAA 58.012 33.333 29.30 0.00 0.00 2.69
1207 1267 9.046296 CCACTGTACAGATTGATTTATCCTAAC 57.954 37.037 29.30 0.00 0.00 2.34
1208 1268 9.046296 CACTGTACAGATTGATTTATCCTAACC 57.954 37.037 29.30 0.00 0.00 2.85
1290 1370 0.038159 CGAAGAAGGCAAGGACGACT 60.038 55.000 0.00 0.00 0.00 4.18
1299 1379 1.476891 GCAAGGACGACTACATCTCCA 59.523 52.381 0.00 0.00 30.84 3.86
1386 1472 1.762460 GATCCTCTCCCGCCTTCCA 60.762 63.158 0.00 0.00 0.00 3.53
1839 1940 0.037697 TCTCGTCCCATTTCCACGTG 60.038 55.000 9.08 9.08 35.05 4.49
1872 1974 2.158696 GGACAGCCAGCAGAAGGAATAT 60.159 50.000 0.00 0.00 0.00 1.28
1926 2028 2.808202 CGGGGCATGGATTTGTAGAGAG 60.808 54.545 0.00 0.00 0.00 3.20
1968 2070 2.031012 CTGTTCACTGGCCTCGCA 59.969 61.111 3.32 0.00 0.00 5.10
1994 2096 2.673368 GTCTTCTTTCACGGTATGCTGG 59.327 50.000 0.00 0.00 0.00 4.85
2005 2107 1.098050 GTATGCTGGACTTGCTTGGG 58.902 55.000 0.00 0.00 0.00 4.12
2138 2243 1.074775 GGATTGTCACAGGGGTGCA 59.925 57.895 0.00 0.00 44.87 4.57
2171 2276 0.179134 CACACCGCTAGCTACTGACC 60.179 60.000 13.93 0.00 0.00 4.02
2345 2468 1.446099 CATCCAGACCGTGACACCG 60.446 63.158 0.00 0.00 0.00 4.94
2540 2677 6.651225 AGTCAAGCTTGTGGTTCTTATAAGAC 59.349 38.462 25.19 11.08 34.13 3.01
2653 2817 5.812127 GCTTGATTGTCTGTTTGGAAAAACT 59.188 36.000 3.29 0.00 33.95 2.66
2734 2898 7.491372 GTCTGGATACGAATTAGTTTCATGTCA 59.509 37.037 10.35 0.69 42.51 3.58
2737 2901 7.277760 TGGATACGAATTAGTTTCATGTCACAG 59.722 37.037 10.35 0.00 42.51 3.66
2811 2975 9.364653 TGTCCTAAATCCTAAGATTACTACTCC 57.635 37.037 0.00 0.00 42.03 3.85
2816 2980 6.547396 ATCCTAAGATTACTACTCCCTCCA 57.453 41.667 0.00 0.00 0.00 3.86
2825 2989 8.019652 AGATTACTACTCCCTCCATTCCTAAAT 58.980 37.037 0.00 0.00 0.00 1.40
2826 2990 9.322769 GATTACTACTCCCTCCATTCCTAAATA 57.677 37.037 0.00 0.00 0.00 1.40
2827 2991 6.997942 ACTACTCCCTCCATTCCTAAATAC 57.002 41.667 0.00 0.00 0.00 1.89
2828 2992 6.694611 ACTACTCCCTCCATTCCTAAATACT 58.305 40.000 0.00 0.00 0.00 2.12
2829 2993 6.783482 ACTACTCCCTCCATTCCTAAATACTC 59.217 42.308 0.00 0.00 0.00 2.59
2830 2994 4.908481 ACTCCCTCCATTCCTAAATACTCC 59.092 45.833 0.00 0.00 0.00 3.85
2831 2995 4.240323 TCCCTCCATTCCTAAATACTCCC 58.760 47.826 0.00 0.00 0.00 4.30
2832 2996 4.077387 TCCCTCCATTCCTAAATACTCCCT 60.077 45.833 0.00 0.00 0.00 4.20
2833 2997 4.287326 CCCTCCATTCCTAAATACTCCCTC 59.713 50.000 0.00 0.00 0.00 4.30
2834 2998 4.287326 CCTCCATTCCTAAATACTCCCTCC 59.713 50.000 0.00 0.00 0.00 4.30
2835 2999 3.901844 TCCATTCCTAAATACTCCCTCCG 59.098 47.826 0.00 0.00 0.00 4.63
2836 3000 3.646637 CCATTCCTAAATACTCCCTCCGT 59.353 47.826 0.00 0.00 0.00 4.69
2837 3001 4.262506 CCATTCCTAAATACTCCCTCCGTC 60.263 50.000 0.00 0.00 0.00 4.79
2838 3002 2.954792 TCCTAAATACTCCCTCCGTCC 58.045 52.381 0.00 0.00 0.00 4.79
2839 3003 1.612463 CCTAAATACTCCCTCCGTCCG 59.388 57.143 0.00 0.00 0.00 4.79
2840 3004 2.579873 CTAAATACTCCCTCCGTCCGA 58.420 52.381 0.00 0.00 0.00 4.55
2841 3005 1.856629 AAATACTCCCTCCGTCCGAA 58.143 50.000 0.00 0.00 0.00 4.30
2842 3006 1.856629 AATACTCCCTCCGTCCGAAA 58.143 50.000 0.00 0.00 0.00 3.46
2843 3007 1.856629 ATACTCCCTCCGTCCGAAAA 58.143 50.000 0.00 0.00 0.00 2.29
2844 3008 1.856629 TACTCCCTCCGTCCGAAAAT 58.143 50.000 0.00 0.00 0.00 1.82
2845 3009 1.856629 ACTCCCTCCGTCCGAAAATA 58.143 50.000 0.00 0.00 0.00 1.40
2846 3010 1.479730 ACTCCCTCCGTCCGAAAATAC 59.520 52.381 0.00 0.00 0.00 1.89
2847 3011 1.755380 CTCCCTCCGTCCGAAAATACT 59.245 52.381 0.00 0.00 0.00 2.12
2848 3012 2.167900 CTCCCTCCGTCCGAAAATACTT 59.832 50.000 0.00 0.00 0.00 2.24
2849 3013 2.093869 TCCCTCCGTCCGAAAATACTTG 60.094 50.000 0.00 0.00 0.00 3.16
2850 3014 2.354403 CCCTCCGTCCGAAAATACTTGT 60.354 50.000 0.00 0.00 0.00 3.16
2851 3015 2.928116 CCTCCGTCCGAAAATACTTGTC 59.072 50.000 0.00 0.00 0.00 3.18
2852 3016 3.581755 CTCCGTCCGAAAATACTTGTCA 58.418 45.455 0.00 0.00 0.00 3.58
2853 3017 4.181578 CTCCGTCCGAAAATACTTGTCAT 58.818 43.478 0.00 0.00 0.00 3.06
2854 3018 4.571919 TCCGTCCGAAAATACTTGTCATT 58.428 39.130 0.00 0.00 0.00 2.57
2855 3019 4.390603 TCCGTCCGAAAATACTTGTCATTG 59.609 41.667 0.00 0.00 0.00 2.82
2856 3020 4.088648 CGTCCGAAAATACTTGTCATTGC 58.911 43.478 0.00 0.00 0.00 3.56
2857 3021 4.377943 CGTCCGAAAATACTTGTCATTGCA 60.378 41.667 0.00 0.00 0.00 4.08
2858 3022 5.457140 GTCCGAAAATACTTGTCATTGCAA 58.543 37.500 0.00 0.00 0.00 4.08
2859 3023 6.092748 GTCCGAAAATACTTGTCATTGCAAT 58.907 36.000 5.99 5.99 0.00 3.56
2860 3024 6.033831 GTCCGAAAATACTTGTCATTGCAATG 59.966 38.462 29.75 29.75 37.75 2.82
2861 3025 5.289193 CCGAAAATACTTGTCATTGCAATGG 59.711 40.000 33.22 21.73 37.03 3.16
2862 3026 6.092092 CGAAAATACTTGTCATTGCAATGGA 58.908 36.000 33.22 20.39 37.03 3.41
2863 3027 6.033831 CGAAAATACTTGTCATTGCAATGGAC 59.966 38.462 33.22 27.75 37.03 4.02
2864 3028 2.995466 ACTTGTCATTGCAATGGACG 57.005 45.000 33.22 21.40 37.03 4.79
2865 3029 2.229792 ACTTGTCATTGCAATGGACGT 58.770 42.857 33.22 21.94 37.03 4.34
2866 3030 3.407698 ACTTGTCATTGCAATGGACGTA 58.592 40.909 33.22 20.45 37.03 3.57
2867 3031 4.009675 ACTTGTCATTGCAATGGACGTAT 58.990 39.130 33.22 15.84 37.03 3.06
2868 3032 4.094887 ACTTGTCATTGCAATGGACGTATC 59.905 41.667 33.22 17.36 37.03 2.24
2869 3033 3.872696 TGTCATTGCAATGGACGTATCT 58.127 40.909 33.22 0.00 37.03 1.98
2870 3034 5.017294 TGTCATTGCAATGGACGTATCTA 57.983 39.130 33.22 12.69 37.03 1.98
2871 3035 5.049828 TGTCATTGCAATGGACGTATCTAG 58.950 41.667 33.22 8.83 37.03 2.43
2872 3036 5.163457 TGTCATTGCAATGGACGTATCTAGA 60.163 40.000 33.22 11.33 37.03 2.43
2873 3037 5.928839 GTCATTGCAATGGACGTATCTAGAT 59.071 40.000 33.22 10.73 37.03 1.98
2874 3038 5.928264 TCATTGCAATGGACGTATCTAGATG 59.072 40.000 33.22 9.11 37.03 2.90
2875 3039 4.937201 TGCAATGGACGTATCTAGATGT 57.063 40.909 15.79 5.44 0.00 3.06
2876 3040 6.399639 TTGCAATGGACGTATCTAGATGTA 57.600 37.500 15.79 0.00 0.00 2.29
2877 3041 6.590234 TGCAATGGACGTATCTAGATGTAT 57.410 37.500 15.79 0.00 0.00 2.29
2878 3042 6.993079 TGCAATGGACGTATCTAGATGTATT 58.007 36.000 15.79 1.24 0.00 1.89
2879 3043 7.441836 TGCAATGGACGTATCTAGATGTATTT 58.558 34.615 15.79 0.00 0.00 1.40
2880 3044 7.931407 TGCAATGGACGTATCTAGATGTATTTT 59.069 33.333 15.79 0.00 0.00 1.82
2881 3045 9.419297 GCAATGGACGTATCTAGATGTATTTTA 57.581 33.333 15.79 0.00 0.00 1.52
2902 3066 9.822185 ATTTTAGTTTTAGATGCATCCATTTCC 57.178 29.630 23.06 7.34 0.00 3.13
2903 3067 7.953005 TTAGTTTTAGATGCATCCATTTCCA 57.047 32.000 23.06 1.65 0.00 3.53
2904 3068 8.537728 TTAGTTTTAGATGCATCCATTTCCAT 57.462 30.769 23.06 4.58 0.00 3.41
2905 3069 7.047460 AGTTTTAGATGCATCCATTTCCATC 57.953 36.000 23.06 5.56 35.49 3.51
2906 3070 6.041296 AGTTTTAGATGCATCCATTTCCATCC 59.959 38.462 23.06 1.70 35.78 3.51
2907 3071 3.605726 AGATGCATCCATTTCCATCCA 57.394 42.857 23.06 0.00 35.78 3.41
2908 3072 4.127918 AGATGCATCCATTTCCATCCAT 57.872 40.909 23.06 0.00 35.78 3.41
2909 3073 4.489737 AGATGCATCCATTTCCATCCATT 58.510 39.130 23.06 0.00 35.78 3.16
2910 3074 4.905456 AGATGCATCCATTTCCATCCATTT 59.095 37.500 23.06 0.00 35.78 2.32
2911 3075 5.368523 AGATGCATCCATTTCCATCCATTTT 59.631 36.000 23.06 0.00 35.78 1.82
2912 3076 4.771903 TGCATCCATTTCCATCCATTTTG 58.228 39.130 0.00 0.00 0.00 2.44
2913 3077 4.470304 TGCATCCATTTCCATCCATTTTGA 59.530 37.500 0.00 0.00 0.00 2.69
2914 3078 5.131308 TGCATCCATTTCCATCCATTTTGAT 59.869 36.000 0.00 0.00 0.00 2.57
2915 3079 5.468746 GCATCCATTTCCATCCATTTTGATG 59.531 40.000 0.00 0.00 41.47 3.07
2916 3080 6.686885 GCATCCATTTCCATCCATTTTGATGA 60.687 38.462 2.70 0.00 43.94 2.92
2917 3081 6.224665 TCCATTTCCATCCATTTTGATGAC 57.775 37.500 2.70 0.00 43.94 3.06
2918 3082 5.720520 TCCATTTCCATCCATTTTGATGACA 59.279 36.000 2.70 0.00 43.94 3.58
2919 3083 6.212993 TCCATTTCCATCCATTTTGATGACAA 59.787 34.615 2.70 0.00 43.94 3.18
2920 3084 6.537301 CCATTTCCATCCATTTTGATGACAAG 59.463 38.462 2.70 0.00 43.94 3.16
2921 3085 6.669125 TTTCCATCCATTTTGATGACAAGT 57.331 33.333 2.70 0.00 43.94 3.16
2922 3086 7.773489 TTTCCATCCATTTTGATGACAAGTA 57.227 32.000 2.70 0.00 43.94 2.24
2923 3087 7.773489 TTCCATCCATTTTGATGACAAGTAA 57.227 32.000 2.70 0.00 43.94 2.24
2924 3088 7.959658 TCCATCCATTTTGATGACAAGTAAT 57.040 32.000 2.70 0.00 43.94 1.89
2925 3089 8.365060 TCCATCCATTTTGATGACAAGTAATT 57.635 30.769 2.70 0.00 43.94 1.40
2926 3090 8.469200 TCCATCCATTTTGATGACAAGTAATTC 58.531 33.333 2.70 0.00 43.94 2.17
2927 3091 7.707893 CCATCCATTTTGATGACAAGTAATTCC 59.292 37.037 2.70 0.00 43.94 3.01
2928 3092 7.773489 TCCATTTTGATGACAAGTAATTCCA 57.227 32.000 0.00 0.00 37.32 3.53
2929 3093 7.829725 TCCATTTTGATGACAAGTAATTCCAG 58.170 34.615 0.00 0.00 37.32 3.86
2930 3094 7.669304 TCCATTTTGATGACAAGTAATTCCAGA 59.331 33.333 0.00 0.00 37.32 3.86
2931 3095 7.756722 CCATTTTGATGACAAGTAATTCCAGAC 59.243 37.037 0.00 0.00 37.32 3.51
2932 3096 6.480524 TTTGATGACAAGTAATTCCAGACG 57.519 37.500 0.00 0.00 37.32 4.18
2933 3097 4.503910 TGATGACAAGTAATTCCAGACGG 58.496 43.478 0.00 0.00 0.00 4.79
2934 3098 4.221924 TGATGACAAGTAATTCCAGACGGA 59.778 41.667 0.00 0.00 40.60 4.69
2935 3099 4.188247 TGACAAGTAATTCCAGACGGAG 57.812 45.455 0.00 0.00 44.10 4.63
2936 3100 3.056107 TGACAAGTAATTCCAGACGGAGG 60.056 47.826 0.00 0.00 44.10 4.30
2937 3101 2.236395 ACAAGTAATTCCAGACGGAGGG 59.764 50.000 0.00 0.00 44.10 4.30
2938 3102 2.500098 CAAGTAATTCCAGACGGAGGGA 59.500 50.000 0.00 0.00 44.10 4.20
2939 3103 2.389715 AGTAATTCCAGACGGAGGGAG 58.610 52.381 0.00 0.00 44.10 4.30
2954 3118 7.398332 AGACGGAGGGAGTATAAGTCTTTTTAA 59.602 37.037 0.00 0.00 34.27 1.52
2957 3121 7.494952 CGGAGGGAGTATAAGTCTTTTTAAAGG 59.505 40.741 2.63 0.00 36.67 3.11
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
126 128 6.254589 TCGAAAACATGAACACAATTTGGAAC 59.745 34.615 0.00 0.00 0.00 3.62
394 401 7.365741 ACATGCTGAACAAAATTTCTCTACAG 58.634 34.615 0.00 0.00 0.00 2.74
667 677 2.492484 CCTAACGGCTAGCGGATATTCT 59.508 50.000 27.05 2.20 0.00 2.40
742 752 2.817844 GCCAAAAATACCTCAAGACCGT 59.182 45.455 0.00 0.00 0.00 4.83
748 758 6.418057 AAATGACAGCCAAAAATACCTCAA 57.582 33.333 0.00 0.00 0.00 3.02
749 759 6.418057 AAAATGACAGCCAAAAATACCTCA 57.582 33.333 0.00 0.00 0.00 3.86
849 863 2.365941 GACTCCTATAGGGTGCCTTCAC 59.634 54.545 18.97 0.00 42.40 3.18
878 892 1.549170 CTACGGGATTAGCGGCCTAAT 59.451 52.381 0.00 0.00 44.80 1.73
879 893 0.963962 CTACGGGATTAGCGGCCTAA 59.036 55.000 0.00 0.00 37.90 2.69
880 894 0.111061 TCTACGGGATTAGCGGCCTA 59.889 55.000 0.00 0.00 0.00 3.93
881 895 0.757935 TTCTACGGGATTAGCGGCCT 60.758 55.000 0.00 0.00 0.00 5.19
882 896 0.105408 TTTCTACGGGATTAGCGGCC 59.895 55.000 0.00 0.00 0.00 6.13
883 897 1.944032 TTTTCTACGGGATTAGCGGC 58.056 50.000 0.00 0.00 0.00 6.53
923 937 2.476619 GTGGAATAGCGGATGATGTTCG 59.523 50.000 0.00 0.00 33.03 3.95
935 949 3.181461 ACTGCAGTGGATAGTGGAATAGC 60.181 47.826 20.97 0.00 0.00 2.97
1138 1198 2.354003 GGACGAATTGACGGGGAACTAA 60.354 50.000 0.00 0.00 37.61 2.24
1152 1212 2.363795 TGGGCGAGGAGGACGAAT 60.364 61.111 0.00 0.00 0.00 3.34
1204 1264 6.993902 GGGGTTACGATAAATCAATCTGGTTA 59.006 38.462 0.00 0.00 0.00 2.85
1205 1265 5.826208 GGGGTTACGATAAATCAATCTGGTT 59.174 40.000 0.00 0.00 0.00 3.67
1206 1266 5.132144 AGGGGTTACGATAAATCAATCTGGT 59.868 40.000 0.00 0.00 0.00 4.00
1207 1267 5.621193 AGGGGTTACGATAAATCAATCTGG 58.379 41.667 0.00 0.00 0.00 3.86
1208 1268 7.282224 TCAAAGGGGTTACGATAAATCAATCTG 59.718 37.037 0.00 0.00 0.00 2.90
1222 1282 4.082190 GCTGAAAGGATTCAAAGGGGTTAC 60.082 45.833 0.00 0.00 44.64 2.50
1264 1332 1.912371 CTTGCCTTCTTCGCGGAACC 61.912 60.000 6.13 0.00 0.00 3.62
1299 1379 2.654079 CGGCACTGCTTCCTCCTCT 61.654 63.158 0.00 0.00 0.00 3.69
1783 1884 2.549611 AAGCGAGCGAAGATGCGACT 62.550 55.000 0.00 0.00 40.67 4.18
1839 1940 2.485814 CTGGCTGTCCTTAAACTGAAGC 59.514 50.000 0.00 0.00 0.00 3.86
1926 2028 0.951558 TTTTCTCAACCAAGCGGCTC 59.048 50.000 1.45 0.00 34.57 4.70
1968 2070 4.213482 GCATACCGTGAAAGAAGACACTTT 59.787 41.667 0.00 0.00 41.86 2.66
1994 2096 3.939592 GGATACAGTAACCCAAGCAAGTC 59.060 47.826 0.00 0.00 0.00 3.01
2005 2107 5.680619 TCCATGTTCATGGGATACAGTAAC 58.319 41.667 25.48 0.00 41.95 2.50
2171 2276 6.520272 TCTTCCTCTTCTTCTTCTTCTTGTG 58.480 40.000 0.00 0.00 0.00 3.33
2404 2527 4.267928 CGAAGACTACGGATTTGATGGAAC 59.732 45.833 0.00 0.00 0.00 3.62
2540 2677 0.723981 GCGCCTACAGAAGAGCAAAG 59.276 55.000 0.00 0.00 0.00 2.77
2653 2817 5.142061 TCAGCGACAAGAATAGTAACCAA 57.858 39.130 0.00 0.00 0.00 3.67
2737 2901 7.746475 CACGAAAACCAGATTTCAGAATAACTC 59.254 37.037 0.00 0.00 38.87 3.01
2811 2975 4.287326 GGAGGGAGTATTTAGGAATGGAGG 59.713 50.000 0.00 0.00 0.00 4.30
2816 2980 3.902467 GGACGGAGGGAGTATTTAGGAAT 59.098 47.826 0.00 0.00 0.00 3.01
2825 2989 1.856629 ATTTTCGGACGGAGGGAGTA 58.143 50.000 0.00 0.00 0.00 2.59
2826 2990 1.479730 GTATTTTCGGACGGAGGGAGT 59.520 52.381 0.00 0.00 0.00 3.85
2827 2991 1.755380 AGTATTTTCGGACGGAGGGAG 59.245 52.381 0.00 0.00 0.00 4.30
2828 2992 1.856629 AGTATTTTCGGACGGAGGGA 58.143 50.000 0.00 0.00 0.00 4.20
2829 2993 2.277084 CAAGTATTTTCGGACGGAGGG 58.723 52.381 0.00 0.00 0.00 4.30
2830 2994 2.928116 GACAAGTATTTTCGGACGGAGG 59.072 50.000 0.00 0.00 0.00 4.30
2831 2995 3.581755 TGACAAGTATTTTCGGACGGAG 58.418 45.455 0.00 0.00 0.00 4.63
2832 2996 3.663995 TGACAAGTATTTTCGGACGGA 57.336 42.857 0.00 0.00 0.00 4.69
2833 2997 4.647964 CAATGACAAGTATTTTCGGACGG 58.352 43.478 0.00 0.00 0.00 4.79
2834 2998 4.088648 GCAATGACAAGTATTTTCGGACG 58.911 43.478 0.00 0.00 0.00 4.79
2835 2999 5.041951 TGCAATGACAAGTATTTTCGGAC 57.958 39.130 0.00 0.00 0.00 4.79
2836 3000 5.697473 TTGCAATGACAAGTATTTTCGGA 57.303 34.783 0.00 0.00 0.00 4.55
2837 3001 5.289193 CCATTGCAATGACAAGTATTTTCGG 59.711 40.000 35.47 13.61 38.70 4.30
2838 3002 6.033831 GTCCATTGCAATGACAAGTATTTTCG 59.966 38.462 35.47 16.72 38.70 3.46
2839 3003 6.033831 CGTCCATTGCAATGACAAGTATTTTC 59.966 38.462 35.47 10.05 38.70 2.29
2840 3004 5.863397 CGTCCATTGCAATGACAAGTATTTT 59.137 36.000 35.47 0.00 38.70 1.82
2841 3005 5.048083 ACGTCCATTGCAATGACAAGTATTT 60.048 36.000 35.47 10.63 38.70 1.40
2842 3006 4.458989 ACGTCCATTGCAATGACAAGTATT 59.541 37.500 35.47 11.94 38.70 1.89
2843 3007 4.009675 ACGTCCATTGCAATGACAAGTAT 58.990 39.130 35.47 14.37 38.70 2.12
2844 3008 3.407698 ACGTCCATTGCAATGACAAGTA 58.592 40.909 35.47 13.82 38.70 2.24
2845 3009 2.229792 ACGTCCATTGCAATGACAAGT 58.770 42.857 35.47 25.50 38.70 3.16
2846 3010 2.995466 ACGTCCATTGCAATGACAAG 57.005 45.000 35.47 24.95 38.70 3.16
2847 3011 4.260985 AGATACGTCCATTGCAATGACAA 58.739 39.130 35.47 21.61 38.70 3.18
2848 3012 3.872696 AGATACGTCCATTGCAATGACA 58.127 40.909 35.47 20.99 38.70 3.58
2849 3013 5.289595 TCTAGATACGTCCATTGCAATGAC 58.710 41.667 35.47 27.62 38.70 3.06
2850 3014 5.529581 TCTAGATACGTCCATTGCAATGA 57.470 39.130 35.47 20.78 38.70 2.57
2851 3015 5.698089 ACATCTAGATACGTCCATTGCAATG 59.302 40.000 28.91 28.91 36.17 2.82
2852 3016 5.858381 ACATCTAGATACGTCCATTGCAAT 58.142 37.500 5.99 5.99 0.00 3.56
2853 3017 5.276461 ACATCTAGATACGTCCATTGCAA 57.724 39.130 4.54 0.00 0.00 4.08
2854 3018 4.937201 ACATCTAGATACGTCCATTGCA 57.063 40.909 4.54 0.00 0.00 4.08
2855 3019 7.891183 AAATACATCTAGATACGTCCATTGC 57.109 36.000 4.54 0.00 0.00 3.56
2876 3040 9.822185 GGAAATGGATGCATCTAAAACTAAAAT 57.178 29.630 25.28 0.00 0.00 1.82
2877 3041 8.811017 TGGAAATGGATGCATCTAAAACTAAAA 58.189 29.630 25.28 0.98 0.00 1.52
2878 3042 8.359875 TGGAAATGGATGCATCTAAAACTAAA 57.640 30.769 25.28 2.39 0.00 1.85
2879 3043 7.953005 TGGAAATGGATGCATCTAAAACTAA 57.047 32.000 25.28 3.93 0.00 2.24
2880 3044 7.231317 GGATGGAAATGGATGCATCTAAAACTA 59.769 37.037 25.28 12.91 44.70 2.24
2881 3045 6.041296 GGATGGAAATGGATGCATCTAAAACT 59.959 38.462 25.28 2.21 44.70 2.66
2882 3046 6.183360 TGGATGGAAATGGATGCATCTAAAAC 60.183 38.462 25.28 14.09 44.70 2.43
2883 3047 5.898397 TGGATGGAAATGGATGCATCTAAAA 59.102 36.000 25.28 10.04 44.70 1.52
2884 3048 5.456779 TGGATGGAAATGGATGCATCTAAA 58.543 37.500 25.28 12.43 44.70 1.85
2885 3049 5.064314 TGGATGGAAATGGATGCATCTAA 57.936 39.130 25.28 14.87 44.70 2.10
2886 3050 4.727792 TGGATGGAAATGGATGCATCTA 57.272 40.909 25.28 20.79 44.70 1.98
2887 3051 3.605726 TGGATGGAAATGGATGCATCT 57.394 42.857 25.28 6.25 44.70 2.90
2888 3052 4.884668 AATGGATGGAAATGGATGCATC 57.115 40.909 18.81 18.81 44.62 3.91
2889 3053 5.131308 TCAAAATGGATGGAAATGGATGCAT 59.869 36.000 0.00 0.00 32.53 3.96
2890 3054 4.470304 TCAAAATGGATGGAAATGGATGCA 59.530 37.500 0.00 0.00 0.00 3.96
2891 3055 5.026038 TCAAAATGGATGGAAATGGATGC 57.974 39.130 0.00 0.00 0.00 3.91
2892 3056 6.704493 GTCATCAAAATGGATGGAAATGGATG 59.296 38.462 3.59 0.00 43.82 3.51
2893 3057 6.384595 TGTCATCAAAATGGATGGAAATGGAT 59.615 34.615 3.59 0.00 43.82 3.41
2894 3058 5.720520 TGTCATCAAAATGGATGGAAATGGA 59.279 36.000 3.59 0.00 43.82 3.41
2895 3059 5.979993 TGTCATCAAAATGGATGGAAATGG 58.020 37.500 3.59 0.00 43.82 3.16
2896 3060 7.101054 ACTTGTCATCAAAATGGATGGAAATG 58.899 34.615 3.59 0.00 43.82 2.32
2897 3061 7.248743 ACTTGTCATCAAAATGGATGGAAAT 57.751 32.000 3.59 0.00 43.82 2.17
2898 3062 6.669125 ACTTGTCATCAAAATGGATGGAAA 57.331 33.333 3.59 0.00 43.82 3.13
2899 3063 7.773489 TTACTTGTCATCAAAATGGATGGAA 57.227 32.000 3.59 0.00 43.82 3.53
2900 3064 7.959658 ATTACTTGTCATCAAAATGGATGGA 57.040 32.000 3.59 0.00 43.82 3.41
2901 3065 7.707893 GGAATTACTTGTCATCAAAATGGATGG 59.292 37.037 3.59 0.00 43.82 3.51
2902 3066 8.252417 TGGAATTACTTGTCATCAAAATGGATG 58.748 33.333 0.00 0.00 44.78 3.51
2903 3067 8.365060 TGGAATTACTTGTCATCAAAATGGAT 57.635 30.769 0.00 0.00 33.42 3.41
2904 3068 7.669304 TCTGGAATTACTTGTCATCAAAATGGA 59.331 33.333 0.00 0.00 33.42 3.41
2905 3069 7.756722 GTCTGGAATTACTTGTCATCAAAATGG 59.243 37.037 0.00 0.00 33.42 3.16
2906 3070 7.482743 CGTCTGGAATTACTTGTCATCAAAATG 59.517 37.037 0.00 0.00 32.87 2.32
2907 3071 7.362056 CCGTCTGGAATTACTTGTCATCAAAAT 60.362 37.037 0.00 0.00 37.49 1.82
2908 3072 6.072728 CCGTCTGGAATTACTTGTCATCAAAA 60.073 38.462 0.00 0.00 37.49 2.44
2909 3073 5.411361 CCGTCTGGAATTACTTGTCATCAAA 59.589 40.000 0.00 0.00 37.49 2.69
2910 3074 4.935205 CCGTCTGGAATTACTTGTCATCAA 59.065 41.667 0.00 0.00 37.49 2.57
2911 3075 4.221924 TCCGTCTGGAATTACTTGTCATCA 59.778 41.667 0.00 0.00 42.85 3.07
2912 3076 4.755411 TCCGTCTGGAATTACTTGTCATC 58.245 43.478 0.00 0.00 42.85 2.92
2913 3077 4.383118 CCTCCGTCTGGAATTACTTGTCAT 60.383 45.833 0.00 0.00 45.87 3.06
2914 3078 3.056107 CCTCCGTCTGGAATTACTTGTCA 60.056 47.826 0.00 0.00 45.87 3.58
2915 3079 3.522553 CCTCCGTCTGGAATTACTTGTC 58.477 50.000 0.00 0.00 45.87 3.18
2916 3080 2.236395 CCCTCCGTCTGGAATTACTTGT 59.764 50.000 0.00 0.00 45.87 3.16
2917 3081 2.500098 TCCCTCCGTCTGGAATTACTTG 59.500 50.000 0.00 0.00 45.87 3.16
2918 3082 2.766828 CTCCCTCCGTCTGGAATTACTT 59.233 50.000 0.00 0.00 45.87 2.24
2919 3083 2.292323 ACTCCCTCCGTCTGGAATTACT 60.292 50.000 0.00 0.00 45.87 2.24
2920 3084 2.108970 ACTCCCTCCGTCTGGAATTAC 58.891 52.381 0.00 0.00 45.87 1.89
2921 3085 2.544844 ACTCCCTCCGTCTGGAATTA 57.455 50.000 0.00 0.00 45.87 1.40
2922 3086 2.544844 TACTCCCTCCGTCTGGAATT 57.455 50.000 0.00 0.00 45.87 2.17
2923 3087 2.777459 ATACTCCCTCCGTCTGGAAT 57.223 50.000 0.00 0.00 45.87 3.01
2924 3088 3.053095 ACTTATACTCCCTCCGTCTGGAA 60.053 47.826 0.00 0.00 45.87 3.53
2925 3089 2.512896 ACTTATACTCCCTCCGTCTGGA 59.487 50.000 0.00 0.00 43.88 3.86
2926 3090 2.885894 GACTTATACTCCCTCCGTCTGG 59.114 54.545 0.00 0.00 0.00 3.86
2927 3091 3.822940 AGACTTATACTCCCTCCGTCTG 58.177 50.000 0.00 0.00 0.00 3.51
2928 3092 4.523168 AAGACTTATACTCCCTCCGTCT 57.477 45.455 0.00 0.00 32.16 4.18
2929 3093 5.595257 AAAAGACTTATACTCCCTCCGTC 57.405 43.478 0.00 0.00 0.00 4.79
2930 3094 7.486407 TTAAAAAGACTTATACTCCCTCCGT 57.514 36.000 0.00 0.00 0.00 4.69
2931 3095 7.494952 CCTTTAAAAAGACTTATACTCCCTCCG 59.505 40.741 4.01 0.00 38.28 4.63
2932 3096 8.327271 ACCTTTAAAAAGACTTATACTCCCTCC 58.673 37.037 4.01 0.00 38.28 4.30
2933 3097 9.736414 AACCTTTAAAAAGACTTATACTCCCTC 57.264 33.333 4.01 0.00 38.28 4.30
2934 3098 9.736414 GAACCTTTAAAAAGACTTATACTCCCT 57.264 33.333 4.01 0.00 38.28 4.20
2935 3099 8.954350 GGAACCTTTAAAAAGACTTATACTCCC 58.046 37.037 4.01 0.00 38.28 4.30
2936 3100 9.511272 TGGAACCTTTAAAAAGACTTATACTCC 57.489 33.333 4.01 0.00 38.28 3.85
2954 3118 6.407752 CGTATGTAGTCCCTTATTGGAACCTT 60.408 42.308 0.00 0.00 35.80 3.50
2957 3121 5.069516 TCCGTATGTAGTCCCTTATTGGAAC 59.930 44.000 0.00 0.00 35.80 3.62


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.