Multiple sequence alignment - TraesCS2B01G440800

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G440800 chr2B 100.000 3842 0 0 1 3842 632618295 632622136 0.000000e+00 7095.0
1 TraesCS2B01G440800 chr2B 83.350 985 148 10 1037 2011 11578146 11577168 0.000000e+00 896.0
2 TraesCS2B01G440800 chr2B 81.081 333 60 2 388 718 603424789 603425120 2.940000e-66 263.0
3 TraesCS2B01G440800 chr2B 90.909 66 6 0 726 791 608669410 608669475 5.290000e-14 89.8
4 TraesCS2B01G440800 chr2A 92.966 2033 119 14 955 2984 677416794 677418805 0.000000e+00 2940.0
5 TraesCS2B01G440800 chr2A 82.262 451 52 12 3363 3791 677478571 677479015 7.840000e-97 364.0
6 TraesCS2B01G440800 chr2A 83.976 337 52 1 384 718 16843282 16843618 4.790000e-84 322.0
7 TraesCS2B01G440800 chr2A 83.235 340 49 4 388 719 36005072 36005411 4.820000e-79 305.0
8 TraesCS2B01G440800 chr2A 83.660 306 36 6 66 360 677415750 677416052 3.780000e-70 276.0
9 TraesCS2B01G440800 chr2A 86.517 89 11 1 717 804 572446254 572446342 3.160000e-16 97.1
10 TraesCS2B01G440800 chr2A 100.000 29 0 0 1874 1902 755737841 755737869 2.000000e-03 54.7
11 TraesCS2B01G440800 chr2D 93.247 1466 63 9 806 2267 533036321 533037754 0.000000e+00 2126.0
12 TraesCS2B01G440800 chr2D 90.391 562 46 7 2287 2845 533037835 533038391 0.000000e+00 732.0
13 TraesCS2B01G440800 chr2D 80.912 833 97 36 3009 3791 533038585 533039405 5.490000e-168 601.0
14 TraesCS2B01G440800 chr2D 94.268 314 13 2 3 311 533035977 533036290 3.470000e-130 475.0
15 TraesCS2B01G440800 chr2D 98.361 61 1 0 2826 2886 533038392 533038452 1.460000e-19 108.0
16 TraesCS2B01G440800 chr7A 88.298 376 44 0 1089 1464 19165024 19164649 5.850000e-123 451.0
17 TraesCS2B01G440800 chr7A 88.048 251 29 1 1829 2078 19151891 19151641 2.900000e-76 296.0
18 TraesCS2B01G440800 chr7A 83.755 277 43 1 444 718 84404962 84405238 1.060000e-65 261.0
19 TraesCS2B01G440800 chr7D 75.602 914 190 21 1155 2045 104210579 104211482 4.590000e-114 422.0
20 TraesCS2B01G440800 chr7D 88.000 50 6 0 2283 2332 77170731 77170682 4.150000e-05 60.2
21 TraesCS2B01G440800 chr5D 84.273 337 51 2 384 718 407783227 407783563 1.030000e-85 327.0
22 TraesCS2B01G440800 chr5D 88.608 79 8 1 714 791 545281806 545281884 1.140000e-15 95.3
23 TraesCS2B01G440800 chr5B 84.366 339 45 6 388 721 679309850 679310185 3.700000e-85 326.0
24 TraesCS2B01G440800 chr5A 83.086 337 55 1 384 718 311913884 311913548 4.820000e-79 305.0
25 TraesCS2B01G440800 chr5A 87.654 81 10 0 717 797 621541241 621541161 1.140000e-15 95.3
26 TraesCS2B01G440800 chr5A 86.420 81 11 0 717 797 538319347 538319267 5.290000e-14 89.8
27 TraesCS2B01G440800 chr1B 82.544 338 54 5 384 718 638933376 638933041 3.750000e-75 292.0
28 TraesCS2B01G440800 chr6B 84.191 272 40 3 1802 2071 115683958 115684228 1.060000e-65 261.0
29 TraesCS2B01G440800 chr6D 82.288 271 47 1 1802 2071 46615954 46616224 2.310000e-57 233.0
30 TraesCS2B01G440800 chr1D 78.571 336 66 5 387 718 17049782 17050115 2.320000e-52 217.0
31 TraesCS2B01G440800 chr1D 87.805 82 10 0 716 797 481182920 481182839 3.160000e-16 97.1
32 TraesCS2B01G440800 chr1D 87.805 82 10 0 716 797 481320579 481320498 3.160000e-16 97.1
33 TraesCS2B01G440800 chr1D 87.059 85 10 1 2128 2211 363626007 363626091 1.140000e-15 95.3
34 TraesCS2B01G440800 chr1D 100.000 28 0 0 2283 2310 445274081 445274108 7.000000e-03 52.8
35 TraesCS2B01G440800 chr1A 84.541 207 26 4 1731 1931 6409809 6410015 2.340000e-47 200.0
36 TraesCS2B01G440800 chr6A 83.575 207 28 3 1731 1931 595892195 595892401 5.070000e-44 189.0
37 TraesCS2B01G440800 chr4A 80.303 198 33 3 1740 1931 390909322 390909519 1.110000e-30 145.0
38 TraesCS2B01G440800 chr4A 97.222 36 1 0 1512 1547 595417915 595417950 1.150000e-05 62.1
39 TraesCS2B01G440800 chr3D 87.640 89 10 1 717 804 515677268 515677180 6.790000e-18 102.0
40 TraesCS2B01G440800 chr3D 88.000 75 7 1 717 791 48041267 48041339 1.900000e-13 87.9
41 TraesCS2B01G440800 chr3A 75.000 196 42 7 2133 2324 64340034 64340226 2.460000e-12 84.2
42 TraesCS2B01G440800 chr4D 94.444 36 2 0 1512 1547 7898455 7898420 5.360000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G440800 chr2B 632618295 632622136 3841 False 7095.0 7095 100.0000 1 3842 1 chr2B.!!$F3 3841
1 TraesCS2B01G440800 chr2B 11577168 11578146 978 True 896.0 896 83.3500 1037 2011 1 chr2B.!!$R1 974
2 TraesCS2B01G440800 chr2A 677415750 677418805 3055 False 1608.0 2940 88.3130 66 2984 2 chr2A.!!$F6 2918
3 TraesCS2B01G440800 chr2D 533035977 533039405 3428 False 808.4 2126 91.4358 3 3791 5 chr2D.!!$F1 3788
4 TraesCS2B01G440800 chr7D 104210579 104211482 903 False 422.0 422 75.6020 1155 2045 1 chr7D.!!$F1 890

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
423 444 0.179134 GTCTTCCGTGGATCCGACTG 60.179 60.0 7.39 3.59 0.00 3.51 F
661 682 0.182061 TCGCTAGGTGGTCTACGGAT 59.818 55.0 0.00 0.00 0.00 4.18 F
1419 1823 0.320073 TCGTCGCGGACCTCAAAAAT 60.320 50.0 6.13 0.00 0.00 1.82 F
2484 2975 0.036732 ATGTGCTCTTCCCGCTGAAA 59.963 50.0 0.00 0.00 31.06 2.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1610 2014 1.227263 CGGTGGATCAACCTAGCCG 60.227 63.158 17.48 0.00 40.29 5.52 R
2484 2975 0.392193 CCTTGTCTTGCGCCAGAGAT 60.392 55.000 12.08 0.00 0.00 2.75 R
2722 3213 0.637195 TAGACAGCTAGCTCCCCCTT 59.363 55.000 16.15 0.14 0.00 3.95 R
3492 4085 0.478072 TGTGTCCAACAATCAGGCCT 59.522 50.000 0.00 0.00 35.24 5.19 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 4.440839 CAGTTGGAAAGTGGCTTTATCC 57.559 45.455 0.00 0.00 43.50 2.59
36 37 5.543790 AGTTGGAAAGTGGCTTTATCCAATT 59.456 36.000 14.40 9.82 45.18 2.32
39 40 7.546250 TGGAAAGTGGCTTTATCCAATTAAA 57.454 32.000 0.00 0.00 42.81 1.52
40 41 7.610865 TGGAAAGTGGCTTTATCCAATTAAAG 58.389 34.615 0.00 0.00 42.81 1.85
80 86 1.001020 AAAGCCATGGGTGCGATGA 60.001 52.632 19.09 0.00 0.00 2.92
163 179 3.066291 TGGTGTGTGATATGTGGGTTC 57.934 47.619 0.00 0.00 0.00 3.62
198 214 8.695284 GTCGCTGAGAAGAAACATAACTATATG 58.305 37.037 0.00 0.00 43.79 1.78
239 255 1.139058 GAGGCCGACCACAATCTACAT 59.861 52.381 0.00 0.00 39.06 2.29
330 346 7.017319 AGGGACTGTTAATTAGTGTTAAGCT 57.983 36.000 0.66 0.00 37.18 3.74
331 347 7.104290 AGGGACTGTTAATTAGTGTTAAGCTC 58.896 38.462 0.00 0.00 37.18 4.09
333 349 6.035758 GGACTGTTAATTAGTGTTAAGCTCGG 59.964 42.308 0.00 0.00 0.00 4.63
336 352 8.255905 ACTGTTAATTAGTGTTAAGCTCGGTAT 58.744 33.333 0.00 0.00 0.00 2.73
338 354 5.986004 AATTAGTGTTAAGCTCGGTATGC 57.014 39.130 0.00 0.00 0.00 3.14
360 376 1.968493 TCCGTATAGGAGTGGCAATCC 59.032 52.381 25.69 25.69 45.98 3.01
371 392 4.103311 GGAGTGGCAATCCTAATCCTACTT 59.897 45.833 25.74 0.00 33.77 2.24
373 394 6.176014 AGTGGCAATCCTAATCCTACTTAC 57.824 41.667 0.00 0.00 0.00 2.34
374 395 5.071923 AGTGGCAATCCTAATCCTACTTACC 59.928 44.000 0.00 0.00 0.00 2.85
375 396 5.071923 GTGGCAATCCTAATCCTACTTACCT 59.928 44.000 0.00 0.00 0.00 3.08
376 397 6.269307 GTGGCAATCCTAATCCTACTTACCTA 59.731 42.308 0.00 0.00 0.00 3.08
377 398 6.497259 TGGCAATCCTAATCCTACTTACCTAG 59.503 42.308 0.00 0.00 0.00 3.02
378 399 6.070710 GGCAATCCTAATCCTACTTACCTAGG 60.071 46.154 7.41 7.41 35.43 3.02
379 400 6.497606 GCAATCCTAATCCTACTTACCTAGGT 59.502 42.308 20.57 20.57 35.60 3.08
384 405 8.568723 TCCTAATCCTACTTACCTAGGTAAACA 58.431 37.037 29.71 20.39 39.69 2.83
385 406 9.377238 CCTAATCCTACTTACCTAGGTAAACAT 57.623 37.037 29.71 21.29 39.69 2.71
396 417 5.388408 CTAGGTAAACATAGGATCCGGTC 57.612 47.826 5.98 0.00 0.00 4.79
398 419 2.624838 GGTAAACATAGGATCCGGTCGA 59.375 50.000 5.98 0.00 0.00 4.20
399 420 3.257624 GGTAAACATAGGATCCGGTCGAT 59.742 47.826 5.98 0.00 0.00 3.59
401 422 1.996798 ACATAGGATCCGGTCGATGT 58.003 50.000 5.98 9.38 32.32 3.06
403 424 2.698797 ACATAGGATCCGGTCGATGTTT 59.301 45.455 5.98 0.00 32.94 2.83
404 425 2.882927 TAGGATCCGGTCGATGTTTG 57.117 50.000 5.98 0.00 0.00 2.93
405 426 0.902531 AGGATCCGGTCGATGTTTGT 59.097 50.000 5.98 0.00 0.00 2.83
406 427 1.134788 AGGATCCGGTCGATGTTTGTC 60.135 52.381 5.98 0.00 0.00 3.18
407 428 1.134788 GGATCCGGTCGATGTTTGTCT 60.135 52.381 0.00 0.00 0.00 3.41
409 430 2.074547 TCCGGTCGATGTTTGTCTTC 57.925 50.000 0.00 0.00 0.00 2.87
410 431 1.076332 CCGGTCGATGTTTGTCTTCC 58.924 55.000 0.00 0.00 0.00 3.46
411 432 0.713883 CGGTCGATGTTTGTCTTCCG 59.286 55.000 0.00 0.00 0.00 4.30
413 434 1.459592 GGTCGATGTTTGTCTTCCGTG 59.540 52.381 0.00 0.00 0.00 4.94
414 435 1.459592 GTCGATGTTTGTCTTCCGTGG 59.540 52.381 0.00 0.00 0.00 4.94
415 436 1.341852 TCGATGTTTGTCTTCCGTGGA 59.658 47.619 0.00 0.00 0.00 4.02
416 437 2.028476 TCGATGTTTGTCTTCCGTGGAT 60.028 45.455 0.00 0.00 0.00 3.41
417 438 2.348666 CGATGTTTGTCTTCCGTGGATC 59.651 50.000 0.00 0.00 0.00 3.36
418 439 2.178912 TGTTTGTCTTCCGTGGATCC 57.821 50.000 4.20 4.20 0.00 3.36
419 440 1.076332 GTTTGTCTTCCGTGGATCCG 58.924 55.000 7.39 0.00 0.00 4.18
423 444 0.179134 GTCTTCCGTGGATCCGACTG 60.179 60.000 7.39 3.59 0.00 3.51
424 445 0.323087 TCTTCCGTGGATCCGACTGA 60.323 55.000 7.39 5.88 0.00 3.41
425 446 0.530744 CTTCCGTGGATCCGACTGAA 59.469 55.000 7.39 12.60 0.00 3.02
427 448 0.744874 TCCGTGGATCCGACTGAATC 59.255 55.000 7.39 0.00 0.00 2.52
429 450 0.595053 CGTGGATCCGACTGAATCCG 60.595 60.000 7.39 0.00 36.02 4.18
431 452 1.341531 GTGGATCCGACTGAATCCGAT 59.658 52.381 7.39 0.00 36.02 4.18
432 453 2.039418 TGGATCCGACTGAATCCGATT 58.961 47.619 7.39 0.00 36.02 3.34
433 454 2.434336 TGGATCCGACTGAATCCGATTT 59.566 45.455 7.39 0.00 36.02 2.17
434 455 3.118408 TGGATCCGACTGAATCCGATTTT 60.118 43.478 7.39 0.00 36.02 1.82
435 456 3.495001 GGATCCGACTGAATCCGATTTTC 59.505 47.826 0.00 0.00 0.00 2.29
436 457 2.536365 TCCGACTGAATCCGATTTTCG 58.464 47.619 11.18 11.18 40.07 3.46
438 459 2.671396 CCGACTGAATCCGATTTTCGTT 59.329 45.455 14.60 0.00 38.40 3.85
439 460 3.241995 CCGACTGAATCCGATTTTCGTTC 60.242 47.826 14.60 0.00 38.40 3.95
440 461 3.366724 CGACTGAATCCGATTTTCGTTCA 59.633 43.478 10.41 3.85 38.40 3.18
441 462 4.032900 CGACTGAATCCGATTTTCGTTCAT 59.967 41.667 10.41 0.00 35.39 2.57
443 464 5.178797 ACTGAATCCGATTTTCGTTCATCT 58.821 37.500 0.00 0.00 35.39 2.90
444 465 6.338146 ACTGAATCCGATTTTCGTTCATCTA 58.662 36.000 0.00 0.00 35.39 1.98
445 466 6.986817 ACTGAATCCGATTTTCGTTCATCTAT 59.013 34.615 0.00 0.00 35.39 1.98
446 467 7.042456 ACTGAATCCGATTTTCGTTCATCTATG 60.042 37.037 0.00 0.00 35.39 2.23
447 468 5.597813 ATCCGATTTTCGTTCATCTATGC 57.402 39.130 0.00 0.00 38.40 3.14
448 469 3.807622 TCCGATTTTCGTTCATCTATGCC 59.192 43.478 0.00 0.00 38.40 4.40
450 471 4.319046 CCGATTTTCGTTCATCTATGCCTG 60.319 45.833 0.00 0.00 38.40 4.85
451 472 4.271049 CGATTTTCGTTCATCTATGCCTGT 59.729 41.667 0.00 0.00 34.72 4.00
452 473 4.944962 TTTTCGTTCATCTATGCCTGTG 57.055 40.909 0.00 0.00 0.00 3.66
453 474 3.610040 TTCGTTCATCTATGCCTGTGT 57.390 42.857 0.00 0.00 0.00 3.72
454 475 2.892374 TCGTTCATCTATGCCTGTGTG 58.108 47.619 0.00 0.00 0.00 3.82
455 476 2.233676 TCGTTCATCTATGCCTGTGTGT 59.766 45.455 0.00 0.00 0.00 3.72
456 477 2.604914 CGTTCATCTATGCCTGTGTGTC 59.395 50.000 0.00 0.00 0.00 3.67
457 478 3.677148 CGTTCATCTATGCCTGTGTGTCT 60.677 47.826 0.00 0.00 0.00 3.41
458 479 3.531934 TCATCTATGCCTGTGTGTCTG 57.468 47.619 0.00 0.00 0.00 3.51
459 480 3.099141 TCATCTATGCCTGTGTGTCTGA 58.901 45.455 0.00 0.00 0.00 3.27
460 481 3.515104 TCATCTATGCCTGTGTGTCTGAA 59.485 43.478 0.00 0.00 0.00 3.02
463 484 0.767375 ATGCCTGTGTGTCTGAAGGT 59.233 50.000 0.00 0.00 32.06 3.50
464 485 0.546122 TGCCTGTGTGTCTGAAGGTT 59.454 50.000 0.00 0.00 32.06 3.50
465 486 0.947244 GCCTGTGTGTCTGAAGGTTG 59.053 55.000 0.00 0.00 32.06 3.77
466 487 1.597742 CCTGTGTGTCTGAAGGTTGG 58.402 55.000 0.00 0.00 0.00 3.77
467 488 1.140852 CCTGTGTGTCTGAAGGTTGGA 59.859 52.381 0.00 0.00 0.00 3.53
480 501 3.330126 AGGTTGGATCCTTCCGATCTA 57.670 47.619 14.23 0.00 44.03 1.98
482 503 5.011982 AGGTTGGATCCTTCCGATCTATA 57.988 43.478 14.23 0.00 44.03 1.31
484 505 6.026186 AGGTTGGATCCTTCCGATCTATATT 58.974 40.000 14.23 0.00 44.03 1.28
485 506 6.502158 AGGTTGGATCCTTCCGATCTATATTT 59.498 38.462 14.23 0.00 44.03 1.40
486 507 6.819146 GGTTGGATCCTTCCGATCTATATTTC 59.181 42.308 14.23 0.00 45.90 2.17
487 508 7.310734 GGTTGGATCCTTCCGATCTATATTTCT 60.311 40.741 14.23 0.00 45.90 2.52
488 509 7.411486 TGGATCCTTCCGATCTATATTTCTC 57.589 40.000 14.23 0.00 45.90 2.87
489 510 7.185565 TGGATCCTTCCGATCTATATTTCTCT 58.814 38.462 14.23 0.00 45.90 3.10
490 511 7.676043 TGGATCCTTCCGATCTATATTTCTCTT 59.324 37.037 14.23 0.00 45.90 2.85
491 512 7.978975 GGATCCTTCCGATCTATATTTCTCTTG 59.021 40.741 3.84 0.00 45.90 3.02
492 513 8.657387 ATCCTTCCGATCTATATTTCTCTTGA 57.343 34.615 0.00 0.00 0.00 3.02
499 520 7.962934 GATCTATATTTCTCTTGATCGACGG 57.037 40.000 0.00 0.00 0.00 4.79
500 521 5.700846 TCTATATTTCTCTTGATCGACGGC 58.299 41.667 0.00 0.00 0.00 5.68
501 522 1.560923 ATTTCTCTTGATCGACGGCG 58.439 50.000 2.87 2.87 39.35 6.46
502 523 0.457853 TTTCTCTTGATCGACGGCGG 60.458 55.000 12.58 0.00 38.28 6.13
503 524 2.884087 TTCTCTTGATCGACGGCGGC 62.884 60.000 12.58 7.52 38.28 6.53
504 525 3.417275 CTCTTGATCGACGGCGGCT 62.417 63.158 12.58 0.00 38.28 5.52
505 526 3.257561 CTTGATCGACGGCGGCTG 61.258 66.667 12.58 7.39 38.28 4.85
508 529 4.266070 GATCGACGGCGGCTGCTA 62.266 66.667 18.85 0.00 42.25 3.49
509 530 4.570663 ATCGACGGCGGCTGCTAC 62.571 66.667 18.85 8.17 42.25 3.58
511 532 4.796231 CGACGGCGGCTGCTACTT 62.796 66.667 18.85 0.00 42.25 2.24
512 533 2.434359 GACGGCGGCTGCTACTTT 60.434 61.111 18.85 0.00 42.25 2.66
513 534 2.740714 GACGGCGGCTGCTACTTTG 61.741 63.158 18.85 3.35 42.25 2.77
514 535 3.499737 CGGCGGCTGCTACTTTGG 61.500 66.667 18.85 0.00 42.25 3.28
515 536 2.359975 GGCGGCTGCTACTTTGGT 60.360 61.111 18.85 0.00 42.25 3.67
516 537 2.690778 GGCGGCTGCTACTTTGGTG 61.691 63.158 18.85 0.00 42.25 4.17
518 539 1.868997 CGGCTGCTACTTTGGTGTG 59.131 57.895 0.00 0.00 0.00 3.82
519 540 1.581447 GGCTGCTACTTTGGTGTGC 59.419 57.895 0.00 0.00 0.00 4.57
522 543 0.877071 CTGCTACTTTGGTGTGCTGG 59.123 55.000 0.00 0.00 0.00 4.85
523 544 0.182537 TGCTACTTTGGTGTGCTGGT 59.817 50.000 0.00 0.00 0.00 4.00
524 545 1.318576 GCTACTTTGGTGTGCTGGTT 58.681 50.000 0.00 0.00 0.00 3.67
525 546 1.001378 GCTACTTTGGTGTGCTGGTTG 60.001 52.381 0.00 0.00 0.00 3.77
528 549 2.944129 ACTTTGGTGTGCTGGTTGTAT 58.056 42.857 0.00 0.00 0.00 2.29
529 550 4.093472 ACTTTGGTGTGCTGGTTGTATA 57.907 40.909 0.00 0.00 0.00 1.47
530 551 4.072131 ACTTTGGTGTGCTGGTTGTATAG 58.928 43.478 0.00 0.00 0.00 1.31
531 552 2.779755 TGGTGTGCTGGTTGTATAGG 57.220 50.000 0.00 0.00 0.00 2.57
532 553 1.280710 TGGTGTGCTGGTTGTATAGGG 59.719 52.381 0.00 0.00 0.00 3.53
534 555 2.629051 GTGTGCTGGTTGTATAGGGAC 58.371 52.381 0.00 0.00 0.00 4.46
535 556 2.236395 GTGTGCTGGTTGTATAGGGACT 59.764 50.000 0.00 0.00 46.37 3.85
538 559 4.161565 TGTGCTGGTTGTATAGGGACTTAG 59.838 45.833 0.00 0.00 41.75 2.18
539 560 3.134081 TGCTGGTTGTATAGGGACTTAGC 59.866 47.826 0.00 0.00 41.75 3.09
540 561 3.134081 GCTGGTTGTATAGGGACTTAGCA 59.866 47.826 0.00 0.00 41.75 3.49
541 562 4.694339 CTGGTTGTATAGGGACTTAGCAC 58.306 47.826 0.00 0.00 41.75 4.40
542 563 3.131577 TGGTTGTATAGGGACTTAGCACG 59.868 47.826 0.00 0.00 41.75 5.34
544 565 4.038883 GGTTGTATAGGGACTTAGCACGAT 59.961 45.833 0.00 0.00 41.75 3.73
545 566 4.848562 TGTATAGGGACTTAGCACGATG 57.151 45.455 0.00 0.00 41.75 3.84
547 568 4.277672 TGTATAGGGACTTAGCACGATGAC 59.722 45.833 0.00 0.00 41.75 3.06
549 570 2.180276 AGGGACTTAGCACGATGACTT 58.820 47.619 0.00 0.00 27.25 3.01
550 571 2.567615 AGGGACTTAGCACGATGACTTT 59.432 45.455 0.00 0.00 27.25 2.66
551 572 2.930682 GGGACTTAGCACGATGACTTTC 59.069 50.000 0.00 0.00 0.00 2.62
553 574 2.599082 GACTTAGCACGATGACTTTCCG 59.401 50.000 0.00 0.00 0.00 4.30
554 575 2.230508 ACTTAGCACGATGACTTTCCGA 59.769 45.455 0.00 0.00 0.00 4.55
555 576 2.273370 TAGCACGATGACTTTCCGAC 57.727 50.000 0.00 0.00 0.00 4.79
556 577 0.603569 AGCACGATGACTTTCCGACT 59.396 50.000 0.00 0.00 0.00 4.18
557 578 0.716108 GCACGATGACTTTCCGACTG 59.284 55.000 0.00 0.00 0.00 3.51
558 579 1.935300 GCACGATGACTTTCCGACTGT 60.935 52.381 0.00 0.00 0.00 3.55
559 580 1.986378 CACGATGACTTTCCGACTGTC 59.014 52.381 0.00 0.00 0.00 3.51
560 581 1.887198 ACGATGACTTTCCGACTGTCT 59.113 47.619 6.21 0.00 0.00 3.41
561 582 3.079578 ACGATGACTTTCCGACTGTCTA 58.920 45.455 6.21 0.00 0.00 2.59
562 583 3.119919 ACGATGACTTTCCGACTGTCTAC 60.120 47.826 6.21 0.00 0.00 2.59
563 584 3.127203 CGATGACTTTCCGACTGTCTACT 59.873 47.826 6.21 0.00 0.00 2.57
564 585 4.331992 CGATGACTTTCCGACTGTCTACTA 59.668 45.833 6.21 0.00 0.00 1.82
565 586 5.564048 ATGACTTTCCGACTGTCTACTAC 57.436 43.478 6.21 0.00 0.00 2.73
566 587 4.392047 TGACTTTCCGACTGTCTACTACA 58.608 43.478 6.21 0.00 36.42 2.74
567 588 4.823442 TGACTTTCCGACTGTCTACTACAA 59.177 41.667 6.21 0.00 37.74 2.41
568 589 5.475909 TGACTTTCCGACTGTCTACTACAAT 59.524 40.000 6.21 0.00 37.74 2.71
569 590 6.656270 TGACTTTCCGACTGTCTACTACAATA 59.344 38.462 6.21 0.00 37.74 1.90
570 591 7.175467 TGACTTTCCGACTGTCTACTACAATAA 59.825 37.037 6.21 0.00 37.74 1.40
571 592 8.064336 ACTTTCCGACTGTCTACTACAATAAT 57.936 34.615 6.21 0.00 37.74 1.28
572 593 7.974501 ACTTTCCGACTGTCTACTACAATAATG 59.025 37.037 6.21 0.00 37.74 1.90
573 594 7.400599 TTCCGACTGTCTACTACAATAATGT 57.599 36.000 6.21 0.00 43.74 2.71
574 595 7.400599 TCCGACTGTCTACTACAATAATGTT 57.599 36.000 6.21 0.00 41.05 2.71
575 596 7.833786 TCCGACTGTCTACTACAATAATGTTT 58.166 34.615 6.21 0.00 41.05 2.83
576 597 7.758076 TCCGACTGTCTACTACAATAATGTTTG 59.242 37.037 6.21 0.00 41.05 2.93
577 598 7.544566 CCGACTGTCTACTACAATAATGTTTGT 59.455 37.037 6.21 0.00 42.31 2.83
578 599 8.584600 CGACTGTCTACTACAATAATGTTTGTC 58.415 37.037 6.21 0.00 40.25 3.18
579 600 8.773404 ACTGTCTACTACAATAATGTTTGTCC 57.227 34.615 0.00 0.00 40.25 4.02
580 601 8.372459 ACTGTCTACTACAATAATGTTTGTCCA 58.628 33.333 0.00 0.00 40.25 4.02
581 602 9.214957 CTGTCTACTACAATAATGTTTGTCCAA 57.785 33.333 0.00 0.00 40.25 3.53
582 603 8.995220 TGTCTACTACAATAATGTTTGTCCAAC 58.005 33.333 0.00 0.00 40.25 3.77
583 604 9.216117 GTCTACTACAATAATGTTTGTCCAACT 57.784 33.333 0.00 0.00 40.25 3.16
584 605 9.431887 TCTACTACAATAATGTTTGTCCAACTC 57.568 33.333 0.00 0.00 40.25 3.01
585 606 9.436957 CTACTACAATAATGTTTGTCCAACTCT 57.563 33.333 0.00 0.00 40.25 3.24
586 607 8.099364 ACTACAATAATGTTTGTCCAACTCTG 57.901 34.615 0.00 0.00 40.25 3.35
587 608 7.936847 ACTACAATAATGTTTGTCCAACTCTGA 59.063 33.333 0.00 0.00 40.25 3.27
588 609 6.970484 ACAATAATGTTTGTCCAACTCTGAC 58.030 36.000 0.00 0.00 35.91 3.51
589 610 5.862924 ATAATGTTTGTCCAACTCTGACG 57.137 39.130 0.00 0.00 36.21 4.35
590 611 2.971660 TGTTTGTCCAACTCTGACGA 57.028 45.000 0.00 0.00 36.21 4.20
591 612 3.469008 TGTTTGTCCAACTCTGACGAT 57.531 42.857 0.00 0.00 36.21 3.73
592 613 3.130633 TGTTTGTCCAACTCTGACGATG 58.869 45.455 0.00 0.00 36.21 3.84
593 614 3.181470 TGTTTGTCCAACTCTGACGATGA 60.181 43.478 0.00 0.00 36.21 2.92
594 615 3.744238 TTGTCCAACTCTGACGATGAA 57.256 42.857 0.00 0.00 35.46 2.57
595 616 3.303881 TGTCCAACTCTGACGATGAAG 57.696 47.619 0.00 0.00 35.46 3.02
596 617 2.890945 TGTCCAACTCTGACGATGAAGA 59.109 45.455 0.00 0.00 35.46 2.87
597 618 3.057245 TGTCCAACTCTGACGATGAAGAG 60.057 47.826 0.00 0.00 44.57 2.85
598 619 2.493675 TCCAACTCTGACGATGAAGAGG 59.506 50.000 4.83 0.00 43.54 3.69
599 620 2.493675 CCAACTCTGACGATGAAGAGGA 59.506 50.000 4.83 0.00 43.54 3.71
600 621 3.428725 CCAACTCTGACGATGAAGAGGAG 60.429 52.174 4.83 0.00 43.54 3.69
601 622 3.358111 ACTCTGACGATGAAGAGGAGA 57.642 47.619 4.83 0.00 43.54 3.71
602 623 3.897239 ACTCTGACGATGAAGAGGAGAT 58.103 45.455 4.83 0.00 43.54 2.75
603 624 3.631686 ACTCTGACGATGAAGAGGAGATG 59.368 47.826 4.83 0.00 43.54 2.90
604 625 3.882288 CTCTGACGATGAAGAGGAGATGA 59.118 47.826 0.00 0.00 36.98 2.92
605 626 4.468713 TCTGACGATGAAGAGGAGATGAT 58.531 43.478 0.00 0.00 0.00 2.45
606 627 4.277921 TCTGACGATGAAGAGGAGATGATG 59.722 45.833 0.00 0.00 0.00 3.07
607 628 3.320256 TGACGATGAAGAGGAGATGATGG 59.680 47.826 0.00 0.00 0.00 3.51
608 629 2.036992 ACGATGAAGAGGAGATGATGGC 59.963 50.000 0.00 0.00 0.00 4.40
609 630 2.686235 GATGAAGAGGAGATGATGGCG 58.314 52.381 0.00 0.00 0.00 5.69
610 631 1.780503 TGAAGAGGAGATGATGGCGA 58.219 50.000 0.00 0.00 0.00 5.54
611 632 1.410517 TGAAGAGGAGATGATGGCGAC 59.589 52.381 0.00 0.00 0.00 5.19
612 633 0.387202 AAGAGGAGATGATGGCGACG 59.613 55.000 0.00 0.00 0.00 5.12
613 634 1.663074 GAGGAGATGATGGCGACGC 60.663 63.158 12.43 12.43 0.00 5.19
614 635 3.032609 GGAGATGATGGCGACGCG 61.033 66.667 14.61 3.53 0.00 6.01
632 653 3.764466 CCTTGGGCTCGCTCGAGT 61.764 66.667 15.13 0.00 43.70 4.18
633 654 2.507992 CTTGGGCTCGCTCGAGTG 60.508 66.667 19.99 19.99 43.70 3.51
634 655 4.742201 TTGGGCTCGCTCGAGTGC 62.742 66.667 21.17 17.79 43.70 4.40
636 657 4.443266 GGGCTCGCTCGAGTGCTT 62.443 66.667 21.17 0.00 43.70 3.91
637 658 3.184683 GGCTCGCTCGAGTGCTTG 61.185 66.667 21.17 13.77 43.70 4.01
638 659 3.184683 GCTCGCTCGAGTGCTTGG 61.185 66.667 21.17 11.43 43.70 3.61
639 660 3.184683 CTCGCTCGAGTGCTTGGC 61.185 66.667 21.17 0.32 37.47 4.52
640 661 4.742201 TCGCTCGAGTGCTTGGCC 62.742 66.667 21.17 0.00 0.00 5.36
643 664 2.811317 CTCGAGTGCTTGGCCGTC 60.811 66.667 3.62 0.00 0.00 4.79
644 665 4.717629 TCGAGTGCTTGGCCGTCG 62.718 66.667 0.00 0.00 0.00 5.12
647 668 3.642778 GAGTGCTTGGCCGTCGCTA 62.643 63.158 11.32 0.00 34.44 4.26
648 669 3.188786 GTGCTTGGCCGTCGCTAG 61.189 66.667 11.32 0.00 34.44 3.42
649 670 4.451150 TGCTTGGCCGTCGCTAGG 62.451 66.667 11.32 0.00 34.44 3.02
650 671 4.452733 GCTTGGCCGTCGCTAGGT 62.453 66.667 0.00 0.00 34.44 3.08
651 672 2.509336 CTTGGCCGTCGCTAGGTG 60.509 66.667 0.00 0.00 34.44 4.00
652 673 4.077184 TTGGCCGTCGCTAGGTGG 62.077 66.667 0.00 0.00 34.44 4.61
654 675 4.509737 GGCCGTCGCTAGGTGGTC 62.510 72.222 0.00 0.00 34.44 4.02
655 676 3.450115 GCCGTCGCTAGGTGGTCT 61.450 66.667 0.00 0.00 0.00 3.85
656 677 2.117156 GCCGTCGCTAGGTGGTCTA 61.117 63.158 0.00 0.00 0.00 2.59
657 678 1.726265 CCGTCGCTAGGTGGTCTAC 59.274 63.158 0.00 0.00 0.00 2.59
658 679 1.351012 CGTCGCTAGGTGGTCTACG 59.649 63.158 0.00 0.00 0.00 3.51
659 680 1.726265 GTCGCTAGGTGGTCTACGG 59.274 63.158 0.00 0.00 0.00 4.02
660 681 0.745845 GTCGCTAGGTGGTCTACGGA 60.746 60.000 0.00 0.00 0.00 4.69
661 682 0.182061 TCGCTAGGTGGTCTACGGAT 59.818 55.000 0.00 0.00 0.00 4.18
662 683 0.592148 CGCTAGGTGGTCTACGGATC 59.408 60.000 0.00 0.00 0.00 3.36
663 684 1.814634 CGCTAGGTGGTCTACGGATCT 60.815 57.143 0.00 0.00 0.00 2.75
664 685 1.609555 GCTAGGTGGTCTACGGATCTG 59.390 57.143 0.00 0.00 0.00 2.90
665 686 2.231529 CTAGGTGGTCTACGGATCTGG 58.768 57.143 6.47 0.00 0.00 3.86
666 687 0.629596 AGGTGGTCTACGGATCTGGA 59.370 55.000 6.47 0.00 0.00 3.86
667 688 1.218196 AGGTGGTCTACGGATCTGGAT 59.782 52.381 6.47 0.00 0.00 3.41
668 689 1.341531 GGTGGTCTACGGATCTGGATG 59.658 57.143 6.47 0.00 0.00 3.51
669 690 2.032620 GTGGTCTACGGATCTGGATGT 58.967 52.381 6.47 0.00 0.00 3.06
670 691 3.220110 GTGGTCTACGGATCTGGATGTA 58.780 50.000 6.47 0.00 0.00 2.29
671 692 3.635373 GTGGTCTACGGATCTGGATGTAA 59.365 47.826 6.47 0.00 0.00 2.41
672 693 4.098960 GTGGTCTACGGATCTGGATGTAAA 59.901 45.833 6.47 0.00 0.00 2.01
673 694 4.899457 TGGTCTACGGATCTGGATGTAAAT 59.101 41.667 6.47 0.00 0.00 1.40
674 695 5.365605 TGGTCTACGGATCTGGATGTAAATT 59.634 40.000 6.47 0.00 0.00 1.82
675 696 6.126883 TGGTCTACGGATCTGGATGTAAATTT 60.127 38.462 6.47 0.00 0.00 1.82
676 697 6.766467 GGTCTACGGATCTGGATGTAAATTTT 59.234 38.462 6.47 0.00 0.00 1.82
677 698 7.929785 GGTCTACGGATCTGGATGTAAATTTTA 59.070 37.037 6.47 0.00 0.00 1.52
678 699 8.762426 GTCTACGGATCTGGATGTAAATTTTAC 58.238 37.037 11.57 11.57 0.00 2.01
679 700 8.701895 TCTACGGATCTGGATGTAAATTTTACT 58.298 33.333 17.70 6.06 0.00 2.24
680 701 9.326413 CTACGGATCTGGATGTAAATTTTACTT 57.674 33.333 17.70 12.59 0.00 2.24
681 702 8.209917 ACGGATCTGGATGTAAATTTTACTTC 57.790 34.615 19.47 19.47 0.00 3.01
682 703 8.047310 ACGGATCTGGATGTAAATTTTACTTCT 58.953 33.333 23.54 11.80 0.00 2.85
683 704 9.542462 CGGATCTGGATGTAAATTTTACTTCTA 57.458 33.333 23.54 19.68 0.00 2.10
714 735 9.862149 TCTATGTACTACCTTGATAGTTGATGA 57.138 33.333 0.00 0.00 36.74 2.92
721 742 8.353684 ACTACCTTGATAGTTGATGAATACTCG 58.646 37.037 0.00 0.00 30.99 4.18
722 743 5.986135 ACCTTGATAGTTGATGAATACTCGC 59.014 40.000 0.00 0.00 0.00 5.03
723 744 6.183360 ACCTTGATAGTTGATGAATACTCGCT 60.183 38.462 0.00 0.00 0.00 4.93
724 745 6.703607 CCTTGATAGTTGATGAATACTCGCTT 59.296 38.462 0.00 0.00 0.00 4.68
725 746 7.095857 CCTTGATAGTTGATGAATACTCGCTTC 60.096 40.741 0.00 0.00 0.00 3.86
726 747 5.915196 TGATAGTTGATGAATACTCGCTTCG 59.085 40.000 0.00 0.00 0.00 3.79
727 748 4.111375 AGTTGATGAATACTCGCTTCGT 57.889 40.909 0.00 0.00 0.00 3.85
728 749 4.106197 AGTTGATGAATACTCGCTTCGTC 58.894 43.478 0.00 0.00 38.54 4.20
729 750 3.079960 TGATGAATACTCGCTTCGTCC 57.920 47.619 3.26 0.00 37.69 4.79
730 751 2.223735 TGATGAATACTCGCTTCGTCCC 60.224 50.000 3.26 0.00 37.69 4.46
731 752 1.179152 TGAATACTCGCTTCGTCCCA 58.821 50.000 0.00 0.00 0.00 4.37
733 754 2.953648 TGAATACTCGCTTCGTCCCATA 59.046 45.455 0.00 0.00 0.00 2.74
737 758 5.916661 ATACTCGCTTCGTCCCATAATAT 57.083 39.130 0.00 0.00 0.00 1.28
738 759 7.121611 TGAATACTCGCTTCGTCCCATAATATA 59.878 37.037 0.00 0.00 0.00 0.86
741 762 4.338012 TCGCTTCGTCCCATAATATAGGA 58.662 43.478 0.00 0.00 0.00 2.94
743 764 4.434520 GCTTCGTCCCATAATATAGGAGC 58.565 47.826 0.00 0.00 0.00 4.70
746 767 4.084287 TCGTCCCATAATATAGGAGCGTT 58.916 43.478 8.50 0.00 0.00 4.84
747 768 4.525487 TCGTCCCATAATATAGGAGCGTTT 59.475 41.667 8.50 0.00 0.00 3.60
748 769 5.011329 TCGTCCCATAATATAGGAGCGTTTT 59.989 40.000 8.50 0.00 0.00 2.43
788 918 8.971321 GTGCCAAAAATGCTCTTATATTATGTG 58.029 33.333 0.00 0.00 0.00 3.21
796 926 9.896645 AATGCTCTTATATTATGTGACATAGGG 57.103 33.333 5.34 0.00 0.00 3.53
797 927 7.331026 TGCTCTTATATTATGTGACATAGGGC 58.669 38.462 8.33 8.33 0.00 5.19
798 928 6.477033 GCTCTTATATTATGTGACATAGGGCG 59.523 42.308 5.34 0.00 0.00 6.13
800 930 7.772166 TCTTATATTATGTGACATAGGGCGAG 58.228 38.462 5.34 3.82 0.00 5.03
801 931 7.614192 TCTTATATTATGTGACATAGGGCGAGA 59.386 37.037 5.34 5.86 0.00 4.04
804 934 3.627395 ATGTGACATAGGGCGAGAAAA 57.373 42.857 0.00 0.00 0.00 2.29
882 1119 5.437060 TGTCCTAAGTCTGGAATTATTGGC 58.563 41.667 0.00 0.00 35.10 4.52
887 1124 6.206243 CCTAAGTCTGGAATTATTGGCATCAG 59.794 42.308 0.00 0.00 0.00 2.90
893 1130 6.012337 TGGAATTATTGGCATCAGTAGGAA 57.988 37.500 0.00 0.00 0.00 3.36
912 1150 3.508762 GAAGGCTTGTGCAATCAATCAG 58.491 45.455 3.46 0.00 41.91 2.90
956 1359 3.244561 ACAAATAGGAGGGTGACACACAG 60.245 47.826 11.16 0.00 35.86 3.66
957 1360 2.327325 ATAGGAGGGTGACACACAGT 57.673 50.000 11.16 0.00 35.86 3.55
1015 1419 1.065926 CAGCCATGCAAGACCTACTCA 60.066 52.381 0.00 0.00 0.00 3.41
1022 1426 5.366460 CATGCAAGACCTACTCATTCTCAT 58.634 41.667 0.00 0.00 0.00 2.90
1284 1688 0.320946 GCCGCTACCACAACCTAACA 60.321 55.000 0.00 0.00 0.00 2.41
1290 1694 0.690762 ACCACAACCTAACATCGGCT 59.309 50.000 0.00 0.00 0.00 5.52
1417 1821 1.372499 CTCGTCGCGGACCTCAAAA 60.372 57.895 6.13 0.00 0.00 2.44
1419 1823 0.320073 TCGTCGCGGACCTCAAAAAT 60.320 50.000 6.13 0.00 0.00 1.82
1607 2011 3.041940 CTTCGCGAAGTTGCCGGT 61.042 61.111 34.97 0.00 33.87 5.28
1650 2054 0.320771 AACGGTGGAGCAAGCTAGTG 60.321 55.000 0.00 0.00 0.00 2.74
1792 2208 1.433053 CGACCACAACAAACGCAGGA 61.433 55.000 0.00 0.00 0.00 3.86
2012 2429 1.104630 AGCTAGAGTACCTCAACGCC 58.895 55.000 0.00 0.00 32.06 5.68
2097 2514 0.742281 ACGGACTGCATGCTGACATC 60.742 55.000 28.74 16.41 32.87 3.06
2099 2516 1.099879 GGACTGCATGCTGACATCCC 61.100 60.000 28.74 16.66 32.87 3.85
2112 2529 3.300388 TGACATCCCTGAGACATACTCC 58.700 50.000 0.00 0.00 44.34 3.85
2151 2569 9.952188 GCTTTTCTAAAGTCAAACTTCATAAGT 57.048 29.630 0.00 0.00 45.46 2.24
2403 2894 5.393352 GGACATGAATGTAATTTCTGCTGCA 60.393 40.000 0.88 0.88 41.95 4.41
2419 2910 1.092921 TGCACACAAGGTGTCGGAAC 61.093 55.000 0.00 0.00 43.92 3.62
2484 2975 0.036732 ATGTGCTCTTCCCGCTGAAA 59.963 50.000 0.00 0.00 31.06 2.69
2513 3004 2.803817 AAGACAAGGCGACGTGGGT 61.804 57.895 9.57 0.00 44.74 4.51
2515 3006 3.509137 GACAAGGCGACGTGGGTCA 62.509 63.158 9.57 0.00 44.74 4.02
2567 3058 1.524008 GCCGACAAAGGTGGGGAAAG 61.524 60.000 0.00 0.00 42.66 2.62
2589 3080 4.962836 AGCCTTGTTGCAGCCGCT 62.963 61.111 0.00 0.00 39.64 5.52
2685 3176 2.979814 TCCACATGGGATACTTCACG 57.020 50.000 0.00 0.00 42.15 4.35
2722 3213 0.035439 GTTTGAATGGAGGGAGGCGA 60.035 55.000 0.00 0.00 0.00 5.54
2733 3224 2.444140 GAGGCGAAGGGGGAGCTA 60.444 66.667 0.00 0.00 0.00 3.32
2740 3231 0.689412 GAAGGGGGAGCTAGCTGTCT 60.689 60.000 24.99 10.71 0.00 3.41
2809 3300 1.079819 GCTCACCTCGCTGTGCTTA 60.080 57.895 0.00 0.00 36.17 3.09
2869 3381 6.763355 AGACATGATATACCAGCTTGTAAGG 58.237 40.000 0.00 0.00 31.68 2.69
2891 3403 7.891498 AGGTTGTAATTTCCTTTGTGTAAGT 57.109 32.000 0.00 0.00 31.56 2.24
2893 3405 8.755028 AGGTTGTAATTTCCTTTGTGTAAGTTT 58.245 29.630 0.00 0.00 31.56 2.66
2900 3412 8.926715 ATTTCCTTTGTGTAAGTTTCAACTTC 57.073 30.769 8.22 2.44 45.65 3.01
2928 3440 3.310501 TCGTCTCTGTTGCATGCATAATG 59.689 43.478 23.37 12.19 39.49 1.90
2951 3463 5.349270 TGCATTGCATGTTCAAAATAAGCTC 59.651 36.000 7.38 0.00 31.71 4.09
2975 3487 5.166013 ACCTCTATGTAGGGATTGGGTTA 57.834 43.478 0.00 0.00 41.32 2.85
2980 3492 7.202186 CCTCTATGTAGGGATTGGGTTATGAAA 60.202 40.741 0.00 0.00 32.55 2.69
2985 3509 5.937975 AGGGATTGGGTTATGAAACATTG 57.062 39.130 0.00 0.00 37.34 2.82
2988 3512 5.186797 GGGATTGGGTTATGAAACATTGTCA 59.813 40.000 0.00 0.00 37.34 3.58
2997 3521 7.591426 GGTTATGAAACATTGTCAGTTGTTCTC 59.409 37.037 4.31 5.48 37.34 2.87
2999 3523 9.554395 TTATGAAACATTGTCAGTTGTTCTCTA 57.446 29.630 4.31 0.00 35.09 2.43
3001 3525 7.919690 TGAAACATTGTCAGTTGTTCTCTAAG 58.080 34.615 4.31 0.00 35.09 2.18
3002 3526 7.552687 TGAAACATTGTCAGTTGTTCTCTAAGT 59.447 33.333 4.31 0.00 35.09 2.24
3004 3528 7.251704 ACATTGTCAGTTGTTCTCTAAGTTG 57.748 36.000 0.00 0.00 0.00 3.16
3005 3529 5.734855 TTGTCAGTTGTTCTCTAAGTTGC 57.265 39.130 0.00 0.00 0.00 4.17
3006 3530 4.127171 TGTCAGTTGTTCTCTAAGTTGCC 58.873 43.478 0.00 0.00 0.00 4.52
3007 3531 4.127171 GTCAGTTGTTCTCTAAGTTGCCA 58.873 43.478 0.00 0.00 0.00 4.92
3017 3585 6.109156 TCTCTAAGTTGCCAACTATGTCAA 57.891 37.500 11.10 0.00 41.91 3.18
3019 3587 7.847096 TCTCTAAGTTGCCAACTATGTCAATA 58.153 34.615 11.10 0.00 41.91 1.90
3020 3588 7.764443 TCTCTAAGTTGCCAACTATGTCAATAC 59.236 37.037 11.10 0.00 41.91 1.89
3022 3590 6.892658 AAGTTGCCAACTATGTCAATACAA 57.107 33.333 11.10 0.00 41.91 2.41
3024 3592 7.088589 AGTTGCCAACTATGTCAATACAATC 57.911 36.000 8.67 0.00 40.69 2.67
3027 3595 6.851609 TGCCAACTATGTCAATACAATCAAC 58.148 36.000 0.00 0.00 39.58 3.18
3043 3611 9.912634 ATACAATCAACTTTATTGTTGTTCCAG 57.087 29.630 6.64 0.00 43.31 3.86
3048 3617 5.767816 ACTTTATTGTTGTTCCAGTCACC 57.232 39.130 0.00 0.00 0.00 4.02
3056 3625 2.058705 TGTTCCAGTCACCCATTACCA 58.941 47.619 0.00 0.00 0.00 3.25
3068 3637 4.588106 CACCCATTACCATTCCATGCATTA 59.412 41.667 0.00 0.00 0.00 1.90
3091 3660 2.997986 GCATTCAAATGGACAAGCAAGG 59.002 45.455 4.98 0.00 36.90 3.61
3098 3667 4.862641 AATGGACAAGCAAGGGTATAGT 57.137 40.909 0.00 0.00 0.00 2.12
3105 3674 5.488341 ACAAGCAAGGGTATAGTACAACTG 58.512 41.667 0.00 0.00 0.00 3.16
3106 3675 5.247564 ACAAGCAAGGGTATAGTACAACTGA 59.752 40.000 0.00 0.00 0.00 3.41
3124 3693 6.685767 CAACTGAAAAGTTTCATTTGTCACG 58.314 36.000 20.37 6.37 45.23 4.35
3125 3694 5.949735 ACTGAAAAGTTTCATTTGTCACGT 58.050 33.333 6.92 0.00 45.26 4.49
3127 3696 5.098893 TGAAAAGTTTCATTTGTCACGTGG 58.901 37.500 17.00 0.00 41.88 4.94
3131 3700 6.627395 AAGTTTCATTTGTCACGTGGATTA 57.373 33.333 17.00 0.00 0.00 1.75
3132 3701 6.817765 AGTTTCATTTGTCACGTGGATTAT 57.182 33.333 17.00 2.09 0.00 1.28
3133 3702 6.611381 AGTTTCATTTGTCACGTGGATTATG 58.389 36.000 17.00 14.08 0.00 1.90
3134 3703 6.429692 AGTTTCATTTGTCACGTGGATTATGA 59.570 34.615 17.00 15.99 0.00 2.15
3135 3704 6.421377 TTCATTTGTCACGTGGATTATGAG 57.579 37.500 17.00 0.00 0.00 2.90
3145 3714 7.494625 GTCACGTGGATTATGAGGATAAAAGAA 59.505 37.037 17.00 0.00 0.00 2.52
3165 3734 2.978156 AAGACATCCCAAAGAAGCCA 57.022 45.000 0.00 0.00 0.00 4.75
3169 3738 2.229784 GACATCCCAAAGAAGCCAACTG 59.770 50.000 0.00 0.00 0.00 3.16
3188 3757 5.964958 ACTGACCTGAATTATGTTGTTGG 57.035 39.130 0.00 0.00 0.00 3.77
3189 3758 4.218417 ACTGACCTGAATTATGTTGTTGGC 59.782 41.667 0.00 0.00 0.00 4.52
3193 3762 3.119029 CCTGAATTATGTTGTTGGCCTGG 60.119 47.826 3.32 0.00 0.00 4.45
3200 3769 2.267351 TTGTTGGCCTGGCATGTCG 61.267 57.895 22.05 0.00 0.00 4.35
3203 3772 2.965520 TTGGCCTGGCATGTCGCTA 61.966 57.895 22.05 0.00 41.91 4.26
3206 3775 2.584064 CCTGGCATGTCGCTACCA 59.416 61.111 0.00 0.00 41.91 3.25
3220 3813 4.512571 GTCGCTACCAGTTAAACCTTTTGA 59.487 41.667 0.00 0.00 0.00 2.69
3229 3822 6.349363 CCAGTTAAACCTTTTGATAGCACCTC 60.349 42.308 0.00 0.00 0.00 3.85
3230 3823 6.206634 CAGTTAAACCTTTTGATAGCACCTCA 59.793 38.462 0.00 0.00 0.00 3.86
3237 3830 2.836636 TGATAGCACCTCAGGTCTCT 57.163 50.000 0.00 0.00 31.02 3.10
3239 3832 1.606668 GATAGCACCTCAGGTCTCTCG 59.393 57.143 0.00 0.00 31.02 4.04
3247 3840 2.954989 CCTCAGGTCTCTCGATCATTCA 59.045 50.000 0.00 0.00 0.00 2.57
3250 3843 5.453057 CCTCAGGTCTCTCGATCATTCAATT 60.453 44.000 0.00 0.00 0.00 2.32
3289 3882 3.829886 TTGGCAATGAATGACTTCGAC 57.170 42.857 0.00 0.00 38.19 4.20
3294 3887 3.302740 GCAATGAATGACTTCGACGATCC 60.303 47.826 0.00 0.00 33.86 3.36
3301 3894 4.028852 TGACTTCGACGATCCAACTATG 57.971 45.455 0.00 0.00 0.00 2.23
3303 3896 4.338400 TGACTTCGACGATCCAACTATGAT 59.662 41.667 0.00 0.00 0.00 2.45
3304 3897 4.611943 ACTTCGACGATCCAACTATGATG 58.388 43.478 0.00 0.00 0.00 3.07
3318 3911 6.260377 CAACTATGATGTGCGATGAATTTGT 58.740 36.000 0.00 0.00 0.00 2.83
3320 3913 4.968812 ATGATGTGCGATGAATTTGTGA 57.031 36.364 0.00 0.00 0.00 3.58
3323 3916 3.541071 TGTGCGATGAATTTGTGACTG 57.459 42.857 0.00 0.00 0.00 3.51
3324 3917 2.245096 GTGCGATGAATTTGTGACTGC 58.755 47.619 0.00 0.00 0.00 4.40
3325 3918 1.136000 TGCGATGAATTTGTGACTGCG 60.136 47.619 0.00 0.00 0.00 5.18
3326 3919 1.527696 CGATGAATTTGTGACTGCGC 58.472 50.000 0.00 0.00 0.00 6.09
3327 3920 1.527696 GATGAATTTGTGACTGCGCG 58.472 50.000 0.00 0.00 0.00 6.86
3328 3921 1.128507 GATGAATTTGTGACTGCGCGA 59.871 47.619 12.10 0.00 0.00 5.87
3329 3922 1.155889 TGAATTTGTGACTGCGCGAT 58.844 45.000 12.10 0.00 0.00 4.58
3330 3923 1.128507 TGAATTTGTGACTGCGCGATC 59.871 47.619 12.10 4.08 0.00 3.69
3341 3934 0.440758 TGCGCGATCGTTAAACCAAG 59.559 50.000 17.81 0.00 38.14 3.61
3347 3940 3.001330 GCGATCGTTAAACCAAGATCCTG 59.999 47.826 17.81 0.00 36.94 3.86
3361 3954 3.375699 AGATCCTGGTTCCTAACGATGT 58.624 45.455 1.13 0.00 0.00 3.06
3367 3960 2.894765 TGGTTCCTAACGATGTCAGACA 59.105 45.455 5.50 5.50 0.00 3.41
3372 3965 4.193865 TCCTAACGATGTCAGACATACGA 58.806 43.478 27.68 14.43 39.27 3.43
3374 3967 5.993441 TCCTAACGATGTCAGACATACGATA 59.007 40.000 27.68 22.01 39.27 2.92
3391 3984 2.094390 CGATAAACCTGACCACGAAGGA 60.094 50.000 5.70 0.00 41.22 3.36
3416 4009 2.094854 GTCCCTGCAAGCAATTGAGAAG 60.095 50.000 10.34 1.85 0.00 2.85
3417 4010 2.165167 CCCTGCAAGCAATTGAGAAGA 58.835 47.619 10.34 0.00 0.00 2.87
3418 4011 2.559668 CCCTGCAAGCAATTGAGAAGAA 59.440 45.455 10.34 0.00 0.00 2.52
3420 4013 4.235360 CCTGCAAGCAATTGAGAAGAAAG 58.765 43.478 10.34 0.00 0.00 2.62
3423 4016 6.092955 TGCAAGCAATTGAGAAGAAAGAAT 57.907 33.333 10.34 0.00 0.00 2.40
3436 4029 9.102757 TGAGAAGAAAGAATAACTATGACATGC 57.897 33.333 0.00 0.00 0.00 4.06
3440 4033 8.304202 AGAAAGAATAACTATGACATGCGATC 57.696 34.615 0.00 0.00 0.00 3.69
3442 4035 9.411801 GAAAGAATAACTATGACATGCGATCTA 57.588 33.333 0.00 0.00 0.00 1.98
3469 4062 9.809096 AATATTGCGGATATAGATGAAGTACTG 57.191 33.333 0.00 0.00 30.65 2.74
3497 4090 4.730966 TCGAAGAGATAATACAGAGGCCT 58.269 43.478 3.86 3.86 0.00 5.19
3498 4091 4.520874 TCGAAGAGATAATACAGAGGCCTG 59.479 45.833 12.00 0.00 45.76 4.85
3499 4092 4.520874 CGAAGAGATAATACAGAGGCCTGA 59.479 45.833 12.00 0.00 43.02 3.86
3500 4093 5.184864 CGAAGAGATAATACAGAGGCCTGAT 59.815 44.000 12.00 0.00 43.02 2.90
3555 4169 6.258068 ACATCGGCATCTAACTTTTAGCTAAC 59.742 38.462 5.45 0.00 0.00 2.34
3579 4194 8.935614 ACTAAATTTAACCCTAAGACAAAGCT 57.064 30.769 0.00 0.00 0.00 3.74
3589 4204 2.344093 AGACAAAGCTCTAAGGGGGA 57.656 50.000 0.00 0.00 0.00 4.81
3590 4205 2.852130 AGACAAAGCTCTAAGGGGGAT 58.148 47.619 0.00 0.00 0.00 3.85
3611 4226 1.584724 TTTAAGGAGAGGCAGAGGGG 58.415 55.000 0.00 0.00 0.00 4.79
3620 4235 2.308722 GGCAGAGGGGGTGGATTCA 61.309 63.158 0.00 0.00 0.00 2.57
3622 4237 1.566298 GCAGAGGGGGTGGATTCAGT 61.566 60.000 0.00 0.00 0.00 3.41
3631 4246 1.614317 GGTGGATTCAGTCACCCCAAG 60.614 57.143 0.00 0.00 45.60 3.61
3676 4291 7.291651 CCTAGGTTGGTTTCCTCCTTATGTATA 59.708 40.741 0.00 0.00 36.60 1.47
3679 4294 7.572861 AGGTTGGTTTCCTCCTTATGTATAGAT 59.427 37.037 0.00 0.00 0.00 1.98
3765 4380 3.717707 CATCACCTACAGATGGTTACGG 58.282 50.000 0.00 0.00 39.30 4.02
3767 4382 2.756760 TCACCTACAGATGGTTACGGAC 59.243 50.000 0.00 0.00 35.28 4.79
3769 4384 2.758979 ACCTACAGATGGTTACGGACAG 59.241 50.000 0.00 0.00 33.34 3.51
3770 4385 2.758979 CCTACAGATGGTTACGGACAGT 59.241 50.000 0.00 0.00 0.00 3.55
3780 4397 5.232463 TGGTTACGGACAGTTTATGAAGTC 58.768 41.667 0.00 0.00 0.00 3.01
3781 4398 5.221481 TGGTTACGGACAGTTTATGAAGTCA 60.221 40.000 0.00 0.00 32.79 3.41
3786 4403 6.873997 ACGGACAGTTTATGAAGTCATATCA 58.126 36.000 1.93 0.00 38.49 2.15
3794 4411 9.988815 AGTTTATGAAGTCATATCATGTACTCC 57.011 33.333 1.93 0.00 38.49 3.85
3795 4412 9.209175 GTTTATGAAGTCATATCATGTACTCCC 57.791 37.037 1.93 0.00 38.49 4.30
3796 4413 8.727100 TTATGAAGTCATATCATGTACTCCCT 57.273 34.615 1.93 0.00 38.49 4.20
3797 4414 6.656632 TGAAGTCATATCATGTACTCCCTC 57.343 41.667 0.00 0.00 0.00 4.30
3798 4415 5.540337 TGAAGTCATATCATGTACTCCCTCC 59.460 44.000 0.00 0.00 0.00 4.30
3799 4416 4.082845 AGTCATATCATGTACTCCCTCCG 58.917 47.826 0.00 0.00 0.00 4.63
3800 4417 3.827302 GTCATATCATGTACTCCCTCCGT 59.173 47.826 0.00 0.00 0.00 4.69
3801 4418 4.079970 TCATATCATGTACTCCCTCCGTC 58.920 47.826 0.00 0.00 0.00 4.79
3802 4419 2.757894 ATCATGTACTCCCTCCGTCT 57.242 50.000 0.00 0.00 0.00 4.18
3803 4420 2.054232 TCATGTACTCCCTCCGTCTC 57.946 55.000 0.00 0.00 0.00 3.36
3804 4421 1.283905 TCATGTACTCCCTCCGTCTCA 59.716 52.381 0.00 0.00 0.00 3.27
3805 4422 2.100197 CATGTACTCCCTCCGTCTCAA 58.900 52.381 0.00 0.00 0.00 3.02
3806 4423 1.835494 TGTACTCCCTCCGTCTCAAG 58.165 55.000 0.00 0.00 0.00 3.02
3807 4424 1.075050 TGTACTCCCTCCGTCTCAAGT 59.925 52.381 0.00 0.00 0.00 3.16
3808 4425 2.169330 GTACTCCCTCCGTCTCAAGTT 58.831 52.381 0.00 0.00 0.00 2.66
3809 4426 0.969894 ACTCCCTCCGTCTCAAGTTG 59.030 55.000 0.00 0.00 0.00 3.16
3810 4427 0.969894 CTCCCTCCGTCTCAAGTTGT 59.030 55.000 2.11 0.00 0.00 3.32
3811 4428 2.168496 CTCCCTCCGTCTCAAGTTGTA 58.832 52.381 2.11 0.00 0.00 2.41
3812 4429 1.891150 TCCCTCCGTCTCAAGTTGTAC 59.109 52.381 2.11 2.21 0.00 2.90
3813 4430 1.893801 CCCTCCGTCTCAAGTTGTACT 59.106 52.381 2.11 0.00 0.00 2.73
3814 4431 2.352814 CCCTCCGTCTCAAGTTGTACTG 60.353 54.545 2.11 0.20 0.00 2.74
3815 4432 2.557056 CCTCCGTCTCAAGTTGTACTGA 59.443 50.000 2.11 4.34 0.00 3.41
3816 4433 3.366476 CCTCCGTCTCAAGTTGTACTGAG 60.366 52.174 17.37 17.37 0.00 3.35
3817 4434 3.220110 TCCGTCTCAAGTTGTACTGAGT 58.780 45.455 2.11 0.00 30.63 3.41
3818 4435 3.635373 TCCGTCTCAAGTTGTACTGAGTT 59.365 43.478 2.11 0.00 30.63 3.01
3819 4436 4.098960 TCCGTCTCAAGTTGTACTGAGTTT 59.901 41.667 2.11 0.00 30.63 2.66
3820 4437 4.209288 CCGTCTCAAGTTGTACTGAGTTTG 59.791 45.833 2.11 0.00 30.63 2.93
3821 4438 5.041287 CGTCTCAAGTTGTACTGAGTTTGA 58.959 41.667 2.11 0.00 30.63 2.69
3822 4439 5.174035 CGTCTCAAGTTGTACTGAGTTTGAG 59.826 44.000 14.66 14.66 41.59 3.02
3823 4440 6.273825 GTCTCAAGTTGTACTGAGTTTGAGA 58.726 40.000 17.92 17.92 44.69 3.27
3824 4441 6.926272 GTCTCAAGTTGTACTGAGTTTGAGAT 59.074 38.462 22.26 0.00 46.83 2.75
3825 4442 8.082852 GTCTCAAGTTGTACTGAGTTTGAGATA 58.917 37.037 22.26 5.88 46.83 1.98
3826 4443 8.082852 TCTCAAGTTGTACTGAGTTTGAGATAC 58.917 37.037 17.92 0.00 43.08 2.24
3827 4444 7.952671 TCAAGTTGTACTGAGTTTGAGATACT 58.047 34.615 2.11 0.00 0.00 2.12
3828 4445 8.421784 TCAAGTTGTACTGAGTTTGAGATACTT 58.578 33.333 2.11 0.00 0.00 2.24
3829 4446 9.692749 CAAGTTGTACTGAGTTTGAGATACTTA 57.307 33.333 0.00 0.00 0.00 2.24
3839 4456 9.140286 TGAGTTTGAGATACTTATTTTGAGACG 57.860 33.333 0.00 0.00 0.00 4.18
3840 4457 8.480643 AGTTTGAGATACTTATTTTGAGACGG 57.519 34.615 0.00 0.00 0.00 4.79
3841 4458 8.311836 AGTTTGAGATACTTATTTTGAGACGGA 58.688 33.333 0.00 0.00 0.00 4.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.989168 CACTTTCCAACTGTCTACTACACC 59.011 45.833 0.00 0.00 33.45 4.16
1 2 4.989168 CCACTTTCCAACTGTCTACTACAC 59.011 45.833 0.00 0.00 33.45 2.90
15 16 7.453126 TCTTTAATTGGATAAAGCCACTTTCCA 59.547 33.333 0.00 0.00 40.89 3.53
16 17 7.836842 TCTTTAATTGGATAAAGCCACTTTCC 58.163 34.615 0.00 0.00 40.89 3.13
36 37 8.804204 TGTGTTTAAGGGACAAGTTTTTCTTTA 58.196 29.630 0.00 0.00 33.63 1.85
39 40 6.844097 TGTGTTTAAGGGACAAGTTTTTCT 57.156 33.333 0.00 0.00 0.00 2.52
40 41 7.412563 GCTTTGTGTTTAAGGGACAAGTTTTTC 60.413 37.037 0.00 0.00 31.50 2.29
80 86 0.679002 GTGTGCTGGCCAGTGATCAT 60.679 55.000 32.81 0.00 0.00 2.45
163 179 1.916651 CTTCTCAGCGACAGATGAACG 59.083 52.381 0.00 0.00 42.74 3.95
198 214 6.312426 GCCTCAAGCACATCATCATACTATAC 59.688 42.308 0.00 0.00 42.97 1.47
205 221 1.688772 GGCCTCAAGCACATCATCAT 58.311 50.000 0.00 0.00 46.50 2.45
319 335 4.500887 GGATGCATACCGAGCTTAACACTA 60.501 45.833 0.00 0.00 0.00 2.74
333 349 3.676324 GCCACTCCTATACGGATGCATAC 60.676 52.174 0.00 0.00 42.12 2.39
336 352 0.679505 GCCACTCCTATACGGATGCA 59.320 55.000 0.00 0.00 42.12 3.96
338 354 3.589988 GATTGCCACTCCTATACGGATG 58.410 50.000 0.00 0.00 42.12 3.51
351 367 5.071923 AGGTAAGTAGGATTAGGATTGCCAC 59.928 44.000 0.00 0.00 36.29 5.01
371 392 5.162947 ACCGGATCCTATGTTTACCTAGGTA 60.163 44.000 18.10 18.10 36.17 3.08
373 394 4.158015 ACCGGATCCTATGTTTACCTAGG 58.842 47.826 9.46 7.41 36.10 3.02
374 395 4.082895 CGACCGGATCCTATGTTTACCTAG 60.083 50.000 9.46 0.00 0.00 3.02
375 396 3.822735 CGACCGGATCCTATGTTTACCTA 59.177 47.826 9.46 0.00 0.00 3.08
376 397 2.626743 CGACCGGATCCTATGTTTACCT 59.373 50.000 9.46 0.00 0.00 3.08
377 398 2.624838 TCGACCGGATCCTATGTTTACC 59.375 50.000 9.46 0.00 0.00 2.85
378 399 3.996150 TCGACCGGATCCTATGTTTAC 57.004 47.619 9.46 0.00 0.00 2.01
379 400 3.893200 ACATCGACCGGATCCTATGTTTA 59.107 43.478 9.46 0.00 29.97 2.01
384 405 2.698797 ACAAACATCGACCGGATCCTAT 59.301 45.455 9.46 0.00 31.28 2.57
385 406 2.100252 GACAAACATCGACCGGATCCTA 59.900 50.000 9.46 0.00 31.28 2.94
386 407 0.902531 ACAAACATCGACCGGATCCT 59.097 50.000 9.46 0.00 31.28 3.24
387 408 1.134788 AGACAAACATCGACCGGATCC 60.135 52.381 9.46 0.00 31.28 3.36
388 409 2.295253 AGACAAACATCGACCGGATC 57.705 50.000 9.46 0.32 31.28 3.36
392 413 0.713883 CGGAAGACAAACATCGACCG 59.286 55.000 0.00 0.00 36.47 4.79
393 414 1.459592 CACGGAAGACAAACATCGACC 59.540 52.381 0.00 0.00 0.00 4.79
394 415 1.459592 CCACGGAAGACAAACATCGAC 59.540 52.381 0.00 0.00 0.00 4.20
395 416 1.341852 TCCACGGAAGACAAACATCGA 59.658 47.619 0.00 0.00 0.00 3.59
396 417 1.790755 TCCACGGAAGACAAACATCG 58.209 50.000 0.00 0.00 0.00 3.84
398 419 2.711542 GGATCCACGGAAGACAAACAT 58.288 47.619 6.95 0.00 0.00 2.71
399 420 1.606994 CGGATCCACGGAAGACAAACA 60.607 52.381 13.41 0.00 0.00 2.83
401 422 0.970640 TCGGATCCACGGAAGACAAA 59.029 50.000 13.41 0.00 0.00 2.83
403 424 0.611062 AGTCGGATCCACGGAAGACA 60.611 55.000 13.41 0.00 33.13 3.41
404 425 0.179134 CAGTCGGATCCACGGAAGAC 60.179 60.000 13.41 9.70 0.00 3.01
405 426 0.323087 TCAGTCGGATCCACGGAAGA 60.323 55.000 13.41 0.00 0.00 2.87
406 427 0.530744 TTCAGTCGGATCCACGGAAG 59.469 55.000 13.41 0.00 0.00 3.46
407 428 1.136305 GATTCAGTCGGATCCACGGAA 59.864 52.381 22.05 22.05 33.35 4.30
409 430 0.249489 GGATTCAGTCGGATCCACGG 60.249 60.000 13.41 9.94 33.55 4.94
410 431 0.595053 CGGATTCAGTCGGATCCACG 60.595 60.000 13.41 0.00 32.91 4.94
411 432 0.744874 TCGGATTCAGTCGGATCCAC 59.255 55.000 13.41 9.26 31.94 4.02
413 434 2.821991 AATCGGATTCAGTCGGATCC 57.178 50.000 0.00 0.00 43.65 3.36
414 435 3.182572 CGAAAATCGGATTCAGTCGGATC 59.817 47.826 17.07 0.00 43.65 3.36
415 436 3.123804 CGAAAATCGGATTCAGTCGGAT 58.876 45.455 17.07 0.00 45.60 4.18
416 437 2.094390 ACGAAAATCGGATTCAGTCGGA 60.094 45.455 23.50 0.00 45.59 4.55
417 438 2.268298 ACGAAAATCGGATTCAGTCGG 58.732 47.619 23.50 12.96 45.59 4.79
418 439 3.366724 TGAACGAAAATCGGATTCAGTCG 59.633 43.478 20.56 20.56 45.59 4.18
419 440 4.921470 TGAACGAAAATCGGATTCAGTC 57.079 40.909 3.28 1.94 45.59 3.51
423 444 6.074005 GCATAGATGAACGAAAATCGGATTC 58.926 40.000 3.28 1.10 45.59 2.52
424 445 5.049405 GGCATAGATGAACGAAAATCGGATT 60.049 40.000 4.66 0.00 45.59 3.01
425 446 4.452455 GGCATAGATGAACGAAAATCGGAT 59.548 41.667 4.66 0.00 45.59 4.18
427 448 3.809832 AGGCATAGATGAACGAAAATCGG 59.190 43.478 4.66 0.00 45.59 4.18
429 450 5.065218 ACACAGGCATAGATGAACGAAAATC 59.935 40.000 0.00 0.00 0.00 2.17
431 452 4.154015 CACACAGGCATAGATGAACGAAAA 59.846 41.667 0.00 0.00 0.00 2.29
432 453 3.684305 CACACAGGCATAGATGAACGAAA 59.316 43.478 0.00 0.00 0.00 3.46
433 454 3.261580 CACACAGGCATAGATGAACGAA 58.738 45.455 0.00 0.00 0.00 3.85
434 455 2.233676 ACACACAGGCATAGATGAACGA 59.766 45.455 0.00 0.00 0.00 3.85
435 456 2.604914 GACACACAGGCATAGATGAACG 59.395 50.000 0.00 0.00 0.00 3.95
436 457 3.620374 CAGACACACAGGCATAGATGAAC 59.380 47.826 0.00 0.00 0.00 3.18
438 459 3.099141 TCAGACACACAGGCATAGATGA 58.901 45.455 0.00 0.00 0.00 2.92
439 460 3.531934 TCAGACACACAGGCATAGATG 57.468 47.619 0.00 0.00 0.00 2.90
440 461 3.118482 CCTTCAGACACACAGGCATAGAT 60.118 47.826 0.00 0.00 0.00 1.98
441 462 2.234661 CCTTCAGACACACAGGCATAGA 59.765 50.000 0.00 0.00 0.00 1.98
443 464 1.977854 ACCTTCAGACACACAGGCATA 59.022 47.619 0.00 0.00 0.00 3.14
444 465 0.767375 ACCTTCAGACACACAGGCAT 59.233 50.000 0.00 0.00 0.00 4.40
445 466 0.546122 AACCTTCAGACACACAGGCA 59.454 50.000 0.00 0.00 0.00 4.75
446 467 0.947244 CAACCTTCAGACACACAGGC 59.053 55.000 0.00 0.00 0.00 4.85
447 468 1.140852 TCCAACCTTCAGACACACAGG 59.859 52.381 0.00 0.00 0.00 4.00
448 469 2.620251 TCCAACCTTCAGACACACAG 57.380 50.000 0.00 0.00 0.00 3.66
450 471 2.039084 AGGATCCAACCTTCAGACACAC 59.961 50.000 15.82 0.00 36.86 3.82
451 472 2.338809 AGGATCCAACCTTCAGACACA 58.661 47.619 15.82 0.00 36.86 3.72
452 473 3.425162 AAGGATCCAACCTTCAGACAC 57.575 47.619 15.82 0.00 45.84 3.67
467 488 8.657387 TCAAGAGAAATATAGATCGGAAGGAT 57.343 34.615 0.00 0.00 38.35 3.24
475 496 6.470877 GCCGTCGATCAAGAGAAATATAGATC 59.529 42.308 0.00 0.00 0.00 2.75
476 497 6.326375 GCCGTCGATCAAGAGAAATATAGAT 58.674 40.000 0.00 0.00 0.00 1.98
477 498 5.617087 CGCCGTCGATCAAGAGAAATATAGA 60.617 44.000 0.00 0.00 38.10 1.98
478 499 4.555360 CGCCGTCGATCAAGAGAAATATAG 59.445 45.833 0.00 0.00 38.10 1.31
480 501 3.309388 CGCCGTCGATCAAGAGAAATAT 58.691 45.455 0.00 0.00 38.10 1.28
482 503 1.560923 CGCCGTCGATCAAGAGAAAT 58.439 50.000 0.00 0.00 38.10 2.17
484 505 1.138883 CCGCCGTCGATCAAGAGAA 59.861 57.895 0.00 0.00 38.10 2.87
485 506 2.798689 CCGCCGTCGATCAAGAGA 59.201 61.111 0.00 0.00 38.10 3.10
486 507 2.956964 GCCGCCGTCGATCAAGAG 60.957 66.667 0.00 0.00 38.10 2.85
487 508 3.449227 AGCCGCCGTCGATCAAGA 61.449 61.111 0.00 0.00 38.10 3.02
488 509 3.257561 CAGCCGCCGTCGATCAAG 61.258 66.667 0.00 0.00 38.10 3.02
491 512 4.266070 TAGCAGCCGCCGTCGATC 62.266 66.667 0.00 0.00 39.83 3.69
492 513 4.570663 GTAGCAGCCGCCGTCGAT 62.571 66.667 0.00 0.00 39.83 3.59
495 516 2.434359 AAAGTAGCAGCCGCCGTC 60.434 61.111 0.00 0.00 39.83 4.79
496 517 2.742372 CAAAGTAGCAGCCGCCGT 60.742 61.111 0.00 0.00 39.83 5.68
498 519 2.359975 ACCAAAGTAGCAGCCGCC 60.360 61.111 0.00 0.00 39.83 6.13
499 520 1.966451 ACACCAAAGTAGCAGCCGC 60.966 57.895 0.00 0.00 38.99 6.53
500 521 1.868997 CACACCAAAGTAGCAGCCG 59.131 57.895 0.00 0.00 0.00 5.52
501 522 0.890996 AGCACACCAAAGTAGCAGCC 60.891 55.000 0.00 0.00 0.00 4.85
502 523 0.239347 CAGCACACCAAAGTAGCAGC 59.761 55.000 0.00 0.00 0.00 5.25
503 524 0.877071 CCAGCACACCAAAGTAGCAG 59.123 55.000 0.00 0.00 0.00 4.24
504 525 0.182537 ACCAGCACACCAAAGTAGCA 59.817 50.000 0.00 0.00 0.00 3.49
505 526 1.001378 CAACCAGCACACCAAAGTAGC 60.001 52.381 0.00 0.00 0.00 3.58
506 527 2.297701 ACAACCAGCACACCAAAGTAG 58.702 47.619 0.00 0.00 0.00 2.57
507 528 2.428544 ACAACCAGCACACCAAAGTA 57.571 45.000 0.00 0.00 0.00 2.24
508 529 2.428544 TACAACCAGCACACCAAAGT 57.571 45.000 0.00 0.00 0.00 2.66
509 530 3.440173 CCTATACAACCAGCACACCAAAG 59.560 47.826 0.00 0.00 0.00 2.77
510 531 3.417101 CCTATACAACCAGCACACCAAA 58.583 45.455 0.00 0.00 0.00 3.28
511 532 2.290641 CCCTATACAACCAGCACACCAA 60.291 50.000 0.00 0.00 0.00 3.67
512 533 1.280710 CCCTATACAACCAGCACACCA 59.719 52.381 0.00 0.00 0.00 4.17
513 534 1.557832 TCCCTATACAACCAGCACACC 59.442 52.381 0.00 0.00 0.00 4.16
514 535 2.236395 AGTCCCTATACAACCAGCACAC 59.764 50.000 0.00 0.00 0.00 3.82
515 536 2.546899 AGTCCCTATACAACCAGCACA 58.453 47.619 0.00 0.00 0.00 4.57
516 537 3.629142 AAGTCCCTATACAACCAGCAC 57.371 47.619 0.00 0.00 0.00 4.40
518 539 3.134081 TGCTAAGTCCCTATACAACCAGC 59.866 47.826 0.00 0.00 0.00 4.85
519 540 4.694339 GTGCTAAGTCCCTATACAACCAG 58.306 47.826 0.00 0.00 0.00 4.00
522 543 4.644103 TCGTGCTAAGTCCCTATACAAC 57.356 45.455 0.00 0.00 0.00 3.32
523 544 4.891168 TCATCGTGCTAAGTCCCTATACAA 59.109 41.667 0.00 0.00 0.00 2.41
524 545 4.277672 GTCATCGTGCTAAGTCCCTATACA 59.722 45.833 0.00 0.00 0.00 2.29
525 546 4.519730 AGTCATCGTGCTAAGTCCCTATAC 59.480 45.833 0.00 0.00 0.00 1.47
528 549 3.014304 AGTCATCGTGCTAAGTCCCTA 57.986 47.619 0.00 0.00 0.00 3.53
529 550 1.853963 AGTCATCGTGCTAAGTCCCT 58.146 50.000 0.00 0.00 0.00 4.20
530 551 2.674796 AAGTCATCGTGCTAAGTCCC 57.325 50.000 0.00 0.00 0.00 4.46
531 552 2.930682 GGAAAGTCATCGTGCTAAGTCC 59.069 50.000 0.00 0.00 0.00 3.85
532 553 2.599082 CGGAAAGTCATCGTGCTAAGTC 59.401 50.000 0.00 0.00 0.00 3.01
534 555 2.599082 GTCGGAAAGTCATCGTGCTAAG 59.401 50.000 0.00 0.00 0.00 2.18
535 556 2.230508 AGTCGGAAAGTCATCGTGCTAA 59.769 45.455 0.00 0.00 0.00 3.09
538 559 0.716108 CAGTCGGAAAGTCATCGTGC 59.284 55.000 0.00 0.00 0.00 5.34
539 560 1.986378 GACAGTCGGAAAGTCATCGTG 59.014 52.381 6.29 0.00 32.68 4.35
540 561 1.887198 AGACAGTCGGAAAGTCATCGT 59.113 47.619 11.98 0.00 34.80 3.73
541 562 2.638556 AGACAGTCGGAAAGTCATCG 57.361 50.000 11.98 0.00 34.80 3.84
542 563 4.705337 AGTAGACAGTCGGAAAGTCATC 57.295 45.455 11.98 5.94 34.80 2.92
544 565 4.392047 TGTAGTAGACAGTCGGAAAGTCA 58.608 43.478 11.98 0.00 34.80 3.41
545 566 5.368256 TTGTAGTAGACAGTCGGAAAGTC 57.632 43.478 0.00 3.60 39.88 3.01
547 568 7.974501 ACATTATTGTAGTAGACAGTCGGAAAG 59.025 37.037 0.00 0.00 39.88 2.62
549 570 7.400599 ACATTATTGTAGTAGACAGTCGGAA 57.599 36.000 0.00 0.00 39.88 4.30
550 571 7.400599 AACATTATTGTAGTAGACAGTCGGA 57.599 36.000 0.00 0.00 39.88 4.55
551 572 7.544566 ACAAACATTATTGTAGTAGACAGTCGG 59.455 37.037 0.00 0.00 41.56 4.79
553 574 8.870879 GGACAAACATTATTGTAGTAGACAGTC 58.129 37.037 0.00 0.00 43.31 3.51
554 575 8.372459 TGGACAAACATTATTGTAGTAGACAGT 58.628 33.333 0.00 0.00 43.31 3.55
555 576 8.771920 TGGACAAACATTATTGTAGTAGACAG 57.228 34.615 0.00 0.00 43.31 3.51
556 577 8.995220 GTTGGACAAACATTATTGTAGTAGACA 58.005 33.333 0.00 0.00 43.31 3.41
557 578 9.216117 AGTTGGACAAACATTATTGTAGTAGAC 57.784 33.333 0.00 0.00 43.31 2.59
558 579 9.431887 GAGTTGGACAAACATTATTGTAGTAGA 57.568 33.333 0.00 0.00 43.31 2.59
559 580 9.436957 AGAGTTGGACAAACATTATTGTAGTAG 57.563 33.333 0.00 0.00 43.31 2.57
560 581 9.214957 CAGAGTTGGACAAACATTATTGTAGTA 57.785 33.333 0.00 0.00 43.31 1.82
561 582 7.936847 TCAGAGTTGGACAAACATTATTGTAGT 59.063 33.333 0.00 0.00 43.31 2.73
562 583 8.230486 GTCAGAGTTGGACAAACATTATTGTAG 58.770 37.037 0.00 0.00 43.31 2.74
563 584 7.095397 CGTCAGAGTTGGACAAACATTATTGTA 60.095 37.037 0.00 0.00 43.31 2.41
564 585 6.293407 CGTCAGAGTTGGACAAACATTATTGT 60.293 38.462 0.00 0.00 45.82 2.71
565 586 6.073276 TCGTCAGAGTTGGACAAACATTATTG 60.073 38.462 0.00 0.00 41.61 1.90
566 587 5.995282 TCGTCAGAGTTGGACAAACATTATT 59.005 36.000 0.00 0.00 41.61 1.40
567 588 5.547465 TCGTCAGAGTTGGACAAACATTAT 58.453 37.500 0.00 0.00 41.61 1.28
568 589 4.951254 TCGTCAGAGTTGGACAAACATTA 58.049 39.130 0.00 0.00 41.61 1.90
569 590 3.804036 TCGTCAGAGTTGGACAAACATT 58.196 40.909 0.00 0.00 41.61 2.71
570 591 3.469008 TCGTCAGAGTTGGACAAACAT 57.531 42.857 0.00 0.00 41.61 2.71
571 592 2.971660 TCGTCAGAGTTGGACAAACA 57.028 45.000 0.00 0.00 41.61 2.83
572 593 3.390135 TCATCGTCAGAGTTGGACAAAC 58.610 45.455 0.00 0.00 39.24 2.93
573 594 3.744238 TCATCGTCAGAGTTGGACAAA 57.256 42.857 0.00 0.00 34.97 2.83
574 595 3.320826 TCTTCATCGTCAGAGTTGGACAA 59.679 43.478 0.00 0.00 34.97 3.18
575 596 2.890945 TCTTCATCGTCAGAGTTGGACA 59.109 45.455 0.00 0.00 34.97 4.02
576 597 3.506810 CTCTTCATCGTCAGAGTTGGAC 58.493 50.000 0.00 0.00 33.13 4.02
577 598 2.493675 CCTCTTCATCGTCAGAGTTGGA 59.506 50.000 0.00 0.00 35.64 3.53
578 599 2.493675 TCCTCTTCATCGTCAGAGTTGG 59.506 50.000 0.00 0.00 35.64 3.77
579 600 3.441922 TCTCCTCTTCATCGTCAGAGTTG 59.558 47.826 0.00 0.00 35.64 3.16
580 601 3.691575 TCTCCTCTTCATCGTCAGAGTT 58.308 45.455 0.00 0.00 35.64 3.01
581 602 3.358111 TCTCCTCTTCATCGTCAGAGT 57.642 47.619 0.00 0.00 35.64 3.24
582 603 3.882288 TCATCTCCTCTTCATCGTCAGAG 59.118 47.826 0.00 0.00 36.96 3.35
583 604 3.891049 TCATCTCCTCTTCATCGTCAGA 58.109 45.455 0.00 0.00 0.00 3.27
584 605 4.548494 CATCATCTCCTCTTCATCGTCAG 58.452 47.826 0.00 0.00 0.00 3.51
585 606 3.320256 CCATCATCTCCTCTTCATCGTCA 59.680 47.826 0.00 0.00 0.00 4.35
586 607 3.860378 GCCATCATCTCCTCTTCATCGTC 60.860 52.174 0.00 0.00 0.00 4.20
587 608 2.036992 GCCATCATCTCCTCTTCATCGT 59.963 50.000 0.00 0.00 0.00 3.73
588 609 2.686235 GCCATCATCTCCTCTTCATCG 58.314 52.381 0.00 0.00 0.00 3.84
589 610 2.298446 TCGCCATCATCTCCTCTTCATC 59.702 50.000 0.00 0.00 0.00 2.92
590 611 2.036992 GTCGCCATCATCTCCTCTTCAT 59.963 50.000 0.00 0.00 0.00 2.57
591 612 1.410517 GTCGCCATCATCTCCTCTTCA 59.589 52.381 0.00 0.00 0.00 3.02
592 613 1.601663 CGTCGCCATCATCTCCTCTTC 60.602 57.143 0.00 0.00 0.00 2.87
593 614 0.387202 CGTCGCCATCATCTCCTCTT 59.613 55.000 0.00 0.00 0.00 2.85
594 615 2.037053 CGTCGCCATCATCTCCTCT 58.963 57.895 0.00 0.00 0.00 3.69
595 616 1.663074 GCGTCGCCATCATCTCCTC 60.663 63.158 5.75 0.00 0.00 3.71
596 617 2.419198 GCGTCGCCATCATCTCCT 59.581 61.111 5.75 0.00 0.00 3.69
597 618 3.032609 CGCGTCGCCATCATCTCC 61.033 66.667 12.44 0.00 0.00 3.71
615 636 3.764466 ACTCGAGCGAGCCCAAGG 61.764 66.667 18.80 0.00 45.54 3.61
616 637 2.507992 CACTCGAGCGAGCCCAAG 60.508 66.667 18.80 1.92 45.54 3.61
617 638 4.742201 GCACTCGAGCGAGCCCAA 62.742 66.667 18.80 0.00 45.54 4.12
619 640 4.443266 AAGCACTCGAGCGAGCCC 62.443 66.667 18.80 10.37 45.54 5.19
620 641 3.184683 CAAGCACTCGAGCGAGCC 61.185 66.667 18.80 10.70 45.54 4.70
621 642 3.184683 CCAAGCACTCGAGCGAGC 61.185 66.667 18.80 14.44 45.54 5.03
622 643 3.184683 GCCAAGCACTCGAGCGAG 61.185 66.667 13.61 17.46 46.91 5.03
623 644 4.742201 GGCCAAGCACTCGAGCGA 62.742 66.667 13.61 0.00 40.15 4.93
626 647 2.811317 GACGGCCAAGCACTCGAG 60.811 66.667 11.84 11.84 0.00 4.04
627 648 4.717629 CGACGGCCAAGCACTCGA 62.718 66.667 2.24 0.00 33.00 4.04
629 650 3.642778 TAGCGACGGCCAAGCACTC 62.643 63.158 15.15 0.00 41.24 3.51
630 651 3.649277 CTAGCGACGGCCAAGCACT 62.649 63.158 15.15 2.61 41.24 4.40
631 652 3.188786 CTAGCGACGGCCAAGCAC 61.189 66.667 15.15 0.00 41.24 4.40
632 653 4.451150 CCTAGCGACGGCCAAGCA 62.451 66.667 15.15 2.53 41.24 3.91
633 654 4.452733 ACCTAGCGACGGCCAAGC 62.453 66.667 2.24 4.51 41.24 4.01
634 655 2.509336 CACCTAGCGACGGCCAAG 60.509 66.667 2.24 0.00 41.24 3.61
635 656 4.077184 CCACCTAGCGACGGCCAA 62.077 66.667 2.24 0.00 41.24 4.52
637 658 4.509737 GACCACCTAGCGACGGCC 62.510 72.222 0.00 0.00 41.24 6.13
638 659 2.117156 TAGACCACCTAGCGACGGC 61.117 63.158 0.00 0.00 40.37 5.68
639 660 1.726265 GTAGACCACCTAGCGACGG 59.274 63.158 0.00 0.00 0.00 4.79
640 661 1.351012 CGTAGACCACCTAGCGACG 59.649 63.158 0.00 0.00 0.00 5.12
641 662 0.745845 TCCGTAGACCACCTAGCGAC 60.746 60.000 0.00 0.00 0.00 5.19
642 663 0.182061 ATCCGTAGACCACCTAGCGA 59.818 55.000 0.00 0.00 0.00 4.93
643 664 0.592148 GATCCGTAGACCACCTAGCG 59.408 60.000 0.00 0.00 0.00 4.26
644 665 1.609555 CAGATCCGTAGACCACCTAGC 59.390 57.143 0.00 0.00 0.00 3.42
645 666 2.158652 TCCAGATCCGTAGACCACCTAG 60.159 54.545 0.00 0.00 0.00 3.02
646 667 1.848388 TCCAGATCCGTAGACCACCTA 59.152 52.381 0.00 0.00 0.00 3.08
647 668 0.629596 TCCAGATCCGTAGACCACCT 59.370 55.000 0.00 0.00 0.00 4.00
648 669 1.341531 CATCCAGATCCGTAGACCACC 59.658 57.143 0.00 0.00 0.00 4.61
649 670 2.032620 ACATCCAGATCCGTAGACCAC 58.967 52.381 0.00 0.00 0.00 4.16
650 671 2.454336 ACATCCAGATCCGTAGACCA 57.546 50.000 0.00 0.00 0.00 4.02
651 672 4.931661 TTTACATCCAGATCCGTAGACC 57.068 45.455 0.00 0.00 0.00 3.85
652 673 7.787725 AAAATTTACATCCAGATCCGTAGAC 57.212 36.000 0.00 0.00 0.00 2.59
653 674 8.701895 AGTAAAATTTACATCCAGATCCGTAGA 58.298 33.333 17.00 0.00 0.00 2.59
654 675 8.888579 AGTAAAATTTACATCCAGATCCGTAG 57.111 34.615 17.00 0.00 0.00 3.51
655 676 9.321562 GAAGTAAAATTTACATCCAGATCCGTA 57.678 33.333 17.00 0.00 0.00 4.02
656 677 8.047310 AGAAGTAAAATTTACATCCAGATCCGT 58.953 33.333 17.00 0.00 0.00 4.69
657 678 8.438676 AGAAGTAAAATTTACATCCAGATCCG 57.561 34.615 17.00 0.00 0.00 4.18
688 709 9.862149 TCATCAACTATCAAGGTAGTACATAGA 57.138 33.333 10.72 2.45 33.92 1.98
695 716 8.353684 CGAGTATTCATCAACTATCAAGGTAGT 58.646 37.037 0.00 0.00 36.50 2.73
696 717 7.327275 GCGAGTATTCATCAACTATCAAGGTAG 59.673 40.741 0.00 0.00 0.00 3.18
697 718 7.014326 AGCGAGTATTCATCAACTATCAAGGTA 59.986 37.037 0.00 0.00 0.00 3.08
698 719 5.986135 GCGAGTATTCATCAACTATCAAGGT 59.014 40.000 0.00 0.00 0.00 3.50
699 720 6.219473 AGCGAGTATTCATCAACTATCAAGG 58.781 40.000 0.00 0.00 0.00 3.61
700 721 7.357941 CGAAGCGAGTATTCATCAACTATCAAG 60.358 40.741 0.00 0.00 0.00 3.02
701 722 6.417930 CGAAGCGAGTATTCATCAACTATCAA 59.582 38.462 0.00 0.00 0.00 2.57
702 723 5.915196 CGAAGCGAGTATTCATCAACTATCA 59.085 40.000 0.00 0.00 0.00 2.15
703 724 5.915758 ACGAAGCGAGTATTCATCAACTATC 59.084 40.000 0.00 0.00 0.00 2.08
704 725 5.833082 ACGAAGCGAGTATTCATCAACTAT 58.167 37.500 0.00 0.00 0.00 2.12
705 726 5.244785 ACGAAGCGAGTATTCATCAACTA 57.755 39.130 0.00 0.00 0.00 2.24
706 727 4.106197 GACGAAGCGAGTATTCATCAACT 58.894 43.478 0.00 0.00 0.00 3.16
707 728 3.243177 GGACGAAGCGAGTATTCATCAAC 59.757 47.826 0.00 0.00 0.00 3.18
708 729 3.444916 GGACGAAGCGAGTATTCATCAA 58.555 45.455 0.00 0.00 0.00 2.57
709 730 2.223735 GGGACGAAGCGAGTATTCATCA 60.224 50.000 0.00 0.00 0.00 3.07
710 731 2.223735 TGGGACGAAGCGAGTATTCATC 60.224 50.000 0.00 0.00 0.00 2.92
711 732 1.754803 TGGGACGAAGCGAGTATTCAT 59.245 47.619 0.00 0.00 0.00 2.57
712 733 1.179152 TGGGACGAAGCGAGTATTCA 58.821 50.000 0.00 0.00 0.00 2.57
713 734 2.510768 ATGGGACGAAGCGAGTATTC 57.489 50.000 0.00 0.00 0.00 1.75
714 735 4.602340 ATTATGGGACGAAGCGAGTATT 57.398 40.909 0.00 0.00 0.00 1.89
715 736 5.916661 ATATTATGGGACGAAGCGAGTAT 57.083 39.130 0.00 0.00 0.00 2.12
716 737 5.356190 CCTATATTATGGGACGAAGCGAGTA 59.644 44.000 0.00 0.00 31.57 2.59
717 738 4.158025 CCTATATTATGGGACGAAGCGAGT 59.842 45.833 0.00 0.00 31.57 4.18
718 739 4.398358 TCCTATATTATGGGACGAAGCGAG 59.602 45.833 4.74 0.00 34.71 5.03
719 740 4.338012 TCCTATATTATGGGACGAAGCGA 58.662 43.478 4.74 0.00 34.71 4.93
720 741 4.673441 CTCCTATATTATGGGACGAAGCG 58.327 47.826 4.74 0.00 34.71 4.68
721 742 4.434520 GCTCCTATATTATGGGACGAAGC 58.565 47.826 4.74 3.97 34.71 3.86
722 743 4.158025 ACGCTCCTATATTATGGGACGAAG 59.842 45.833 23.98 11.03 37.62 3.79
723 744 4.084287 ACGCTCCTATATTATGGGACGAA 58.916 43.478 23.98 2.98 37.62 3.85
724 745 3.693807 ACGCTCCTATATTATGGGACGA 58.306 45.455 23.98 3.25 37.62 4.20
725 746 4.451629 AACGCTCCTATATTATGGGACG 57.548 45.455 19.49 19.49 38.93 4.79
761 782 8.917088 ACATAATATAAGAGCATTTTTGGCACT 58.083 29.630 0.00 0.00 33.53 4.40
762 783 8.971321 CACATAATATAAGAGCATTTTTGGCAC 58.029 33.333 0.00 0.00 0.00 5.01
770 791 9.896645 CCCTATGTCACATAATATAAGAGCATT 57.103 33.333 0.00 0.00 0.00 3.56
772 793 7.331026 GCCCTATGTCACATAATATAAGAGCA 58.669 38.462 0.00 0.00 0.00 4.26
773 794 6.477033 CGCCCTATGTCACATAATATAAGAGC 59.523 42.308 0.00 0.00 0.00 4.09
776 797 7.772166 TCTCGCCCTATGTCACATAATATAAG 58.228 38.462 0.00 0.00 0.00 1.73
777 798 7.712204 TCTCGCCCTATGTCACATAATATAA 57.288 36.000 0.00 0.00 0.00 0.98
826 1061 6.906659 ACAGAGATTAACACTTTGCTTCATG 58.093 36.000 0.00 0.00 0.00 3.07
855 1092 9.277783 CCAATAATTCCAGACTTAGGACAATAG 57.722 37.037 0.00 0.00 34.19 1.73
882 1119 2.012673 GCACAAGCCTTCCTACTGATG 58.987 52.381 0.00 0.00 33.58 3.07
887 1124 2.436417 TGATTGCACAAGCCTTCCTAC 58.564 47.619 0.00 0.00 41.13 3.18
893 1130 1.822990 CCTGATTGATTGCACAAGCCT 59.177 47.619 3.23 0.00 41.13 4.58
912 1150 0.106669 GGCCCTGTGGAGATTAACCC 60.107 60.000 0.00 0.00 0.00 4.11
956 1359 3.977427 TGTCTGTCTATGTGTGTGTGAC 58.023 45.455 0.00 0.00 0.00 3.67
957 1360 3.552890 GCTGTCTGTCTATGTGTGTGTGA 60.553 47.826 0.00 0.00 0.00 3.58
958 1361 2.733552 GCTGTCTGTCTATGTGTGTGTG 59.266 50.000 0.00 0.00 0.00 3.82
959 1362 2.289072 GGCTGTCTGTCTATGTGTGTGT 60.289 50.000 0.00 0.00 0.00 3.72
960 1363 2.341257 GGCTGTCTGTCTATGTGTGTG 58.659 52.381 0.00 0.00 0.00 3.82
961 1364 1.067565 CGGCTGTCTGTCTATGTGTGT 60.068 52.381 0.00 0.00 0.00 3.72
962 1365 1.633561 CGGCTGTCTGTCTATGTGTG 58.366 55.000 0.00 0.00 0.00 3.82
963 1366 0.108615 GCGGCTGTCTGTCTATGTGT 60.109 55.000 0.00 0.00 0.00 3.72
964 1367 0.108662 TGCGGCTGTCTGTCTATGTG 60.109 55.000 0.00 0.00 0.00 3.21
965 1368 0.174389 CTGCGGCTGTCTGTCTATGT 59.826 55.000 0.00 0.00 0.00 2.29
989 1392 0.737219 GTCTTGCATGGCTGATGTCC 59.263 55.000 0.00 0.00 34.14 4.02
1290 1694 2.727392 CCAGAACGGGCCGTATGGA 61.727 63.158 39.81 0.00 44.32 3.41
1417 1821 1.672356 GGCTGGACGTGCACTGATT 60.672 57.895 16.19 0.00 0.00 2.57
1419 1823 4.314440 GGGCTGGACGTGCACTGA 62.314 66.667 16.19 0.00 0.00 3.41
1607 2011 1.992834 TGGATCAACCTAGCCGCCA 60.993 57.895 0.00 0.00 39.86 5.69
1610 2014 1.227263 CGGTGGATCAACCTAGCCG 60.227 63.158 17.48 0.00 40.29 5.52
2012 2429 1.517257 GAGCACCTCCATGACGACG 60.517 63.158 0.00 0.00 0.00 5.12
2097 2514 2.043227 GGAAGGGAGTATGTCTCAGGG 58.957 57.143 0.00 0.00 44.40 4.45
2099 2516 3.039252 AGGGAAGGGAGTATGTCTCAG 57.961 52.381 0.00 0.00 44.40 3.35
2112 2529 8.809468 ACTTTAGAAAAGCTAATTAGGGAAGG 57.191 34.615 14.28 0.00 38.79 3.46
2309 2798 7.739825 TGCTTACTCTCCATATTAGCTTTGAT 58.260 34.615 0.00 0.00 0.00 2.57
2376 2865 6.318144 CAGCAGAAATTACATTCATGTCCTCT 59.682 38.462 0.00 0.00 41.97 3.69
2484 2975 0.392193 CCTTGTCTTGCGCCAGAGAT 60.392 55.000 12.08 0.00 0.00 2.75
2513 3004 2.553028 GGCTTGAACTCATCTGGGTTGA 60.553 50.000 0.00 0.00 0.00 3.18
2515 3006 1.425066 TGGCTTGAACTCATCTGGGTT 59.575 47.619 0.00 0.00 0.00 4.11
2520 3011 2.613977 CCGTTCTGGCTTGAACTCATCT 60.614 50.000 17.04 0.00 42.82 2.90
2589 3080 2.285368 ATCTCCCCACCGCTTCCA 60.285 61.111 0.00 0.00 0.00 3.53
2654 3145 4.758251 TGTGGAGCATGGCGACGG 62.758 66.667 0.00 0.00 0.00 4.79
2697 3188 1.916181 TCCCTCCATTCAAACTCCCTC 59.084 52.381 0.00 0.00 0.00 4.30
2722 3213 0.637195 TAGACAGCTAGCTCCCCCTT 59.363 55.000 16.15 0.14 0.00 3.95
2733 3224 2.196925 CGGGCGGAGATAGACAGCT 61.197 63.158 0.00 0.00 0.00 4.24
2740 3231 1.300620 CGAAATGCGGGCGGAGATA 60.301 57.895 0.00 0.00 36.03 1.98
2869 3381 9.575783 TGAAACTTACACAAAGGAAATTACAAC 57.424 29.630 0.00 0.00 39.73 3.32
2900 3412 1.570813 TGCAACAGAGACGACAACAG 58.429 50.000 0.00 0.00 0.00 3.16
2938 3450 9.383519 CTACATAGAGGTTGAGCTTATTTTGAA 57.616 33.333 0.00 0.00 0.00 2.69
2951 3463 3.716872 ACCCAATCCCTACATAGAGGTTG 59.283 47.826 0.00 0.00 34.45 3.77
2975 3487 6.949352 AGAGAACAACTGACAATGTTTCAT 57.051 33.333 7.49 0.00 39.73 2.57
2980 3492 6.238484 GCAACTTAGAGAACAACTGACAATGT 60.238 38.462 0.00 0.00 0.00 2.71
2985 3509 4.127171 TGGCAACTTAGAGAACAACTGAC 58.873 43.478 0.00 0.00 37.61 3.51
2988 3512 4.781934 AGTTGGCAACTTAGAGAACAACT 58.218 39.130 26.54 0.01 39.04 3.16
3004 3528 7.088589 AGTTGATTGTATTGACATAGTTGGC 57.911 36.000 0.00 0.00 34.86 4.52
3027 3595 4.582656 TGGGTGACTGGAACAACAATAAAG 59.417 41.667 0.00 0.00 38.70 1.85
3037 3605 2.871096 TGGTAATGGGTGACTGGAAC 57.129 50.000 0.00 0.00 0.00 3.62
3040 3608 2.025416 TGGAATGGTAATGGGTGACTGG 60.025 50.000 0.00 0.00 0.00 4.00
3041 3609 3.364460 TGGAATGGTAATGGGTGACTG 57.636 47.619 0.00 0.00 0.00 3.51
3042 3610 3.902218 CATGGAATGGTAATGGGTGACT 58.098 45.455 0.00 0.00 41.79 3.41
3043 3611 2.362077 GCATGGAATGGTAATGGGTGAC 59.638 50.000 0.00 0.00 46.86 3.67
3048 3617 5.172934 GCATAATGCATGGAATGGTAATGG 58.827 41.667 0.00 0.00 46.86 3.16
3068 3637 3.965379 TGCTTGTCCATTTGAATGCAT 57.035 38.095 0.00 0.00 35.08 3.96
3074 3643 2.380064 ACCCTTGCTTGTCCATTTGA 57.620 45.000 0.00 0.00 0.00 2.69
3105 3674 5.336744 TCCACGTGACAAATGAAACTTTTC 58.663 37.500 19.30 0.00 37.69 2.29
3106 3675 5.317733 TCCACGTGACAAATGAAACTTTT 57.682 34.783 19.30 0.00 0.00 2.27
3119 3688 6.984474 TCTTTTATCCTCATAATCCACGTGAC 59.016 38.462 19.30 0.00 0.00 3.67
3125 3694 9.973661 TGTCTTTTCTTTTATCCTCATAATCCA 57.026 29.630 0.00 0.00 0.00 3.41
3131 3700 7.413446 TGGGATGTCTTTTCTTTTATCCTCAT 58.587 34.615 0.00 0.00 35.55 2.90
3132 3701 6.789268 TGGGATGTCTTTTCTTTTATCCTCA 58.211 36.000 0.00 0.00 35.55 3.86
3133 3702 7.703058 TTGGGATGTCTTTTCTTTTATCCTC 57.297 36.000 0.00 0.00 35.55 3.71
3134 3703 7.950124 TCTTTGGGATGTCTTTTCTTTTATCCT 59.050 33.333 0.00 0.00 35.55 3.24
3135 3704 8.122472 TCTTTGGGATGTCTTTTCTTTTATCC 57.878 34.615 0.00 0.00 34.69 2.59
3145 3714 3.243359 TGGCTTCTTTGGGATGTCTTT 57.757 42.857 0.00 0.00 0.00 2.52
3152 3721 1.478654 GGTCAGTTGGCTTCTTTGGGA 60.479 52.381 0.00 0.00 0.00 4.37
3154 3723 1.610522 CAGGTCAGTTGGCTTCTTTGG 59.389 52.381 0.00 0.00 0.00 3.28
3165 3734 5.278957 GCCAACAACATAATTCAGGTCAGTT 60.279 40.000 0.00 0.00 0.00 3.16
3169 3738 3.763897 AGGCCAACAACATAATTCAGGTC 59.236 43.478 5.01 0.00 0.00 3.85
3189 3758 1.522355 CTGGTAGCGACATGCCAGG 60.522 63.158 10.61 0.00 46.12 4.45
3193 3762 2.095372 GGTTTAACTGGTAGCGACATGC 59.905 50.000 0.00 0.00 46.98 4.06
3200 3769 6.150474 TGCTATCAAAAGGTTTAACTGGTAGC 59.850 38.462 15.79 15.79 0.00 3.58
3203 3772 5.243060 GGTGCTATCAAAAGGTTTAACTGGT 59.757 40.000 0.00 0.00 0.00 4.00
3206 3775 6.303839 TGAGGTGCTATCAAAAGGTTTAACT 58.696 36.000 0.00 0.00 0.00 2.24
3220 3813 1.213182 TCGAGAGACCTGAGGTGCTAT 59.787 52.381 9.89 3.14 35.25 2.97
3229 3822 6.743110 TCTAATTGAATGATCGAGAGACCTG 58.257 40.000 0.00 0.00 46.97 4.00
3230 3823 6.968263 TCTAATTGAATGATCGAGAGACCT 57.032 37.500 0.00 0.00 46.97 3.85
3250 3843 8.899427 TTGCCAAAATCAATGAAATGTTTCTA 57.101 26.923 6.99 0.00 38.02 2.10
3271 3864 1.999735 TCGTCGAAGTCATTCATTGCC 59.000 47.619 0.00 0.00 34.94 4.52
3272 3865 3.302740 GGATCGTCGAAGTCATTCATTGC 60.303 47.826 0.00 0.00 34.94 3.56
3289 3882 2.742774 TCGCACATCATAGTTGGATCG 58.257 47.619 0.00 0.00 0.00 3.69
3294 3887 6.195798 CACAAATTCATCGCACATCATAGTTG 59.804 38.462 0.00 0.00 0.00 3.16
3301 3894 4.093514 CAGTCACAAATTCATCGCACATC 58.906 43.478 0.00 0.00 0.00 3.06
3303 3896 2.350676 GCAGTCACAAATTCATCGCACA 60.351 45.455 0.00 0.00 0.00 4.57
3304 3897 2.245096 GCAGTCACAAATTCATCGCAC 58.755 47.619 0.00 0.00 0.00 5.34
3318 3911 0.711670 GTTTAACGATCGCGCAGTCA 59.288 50.000 16.60 0.00 42.48 3.41
3320 3913 0.668096 TGGTTTAACGATCGCGCAGT 60.668 50.000 16.60 0.00 42.48 4.40
3323 3916 0.717224 TCTTGGTTTAACGATCGCGC 59.283 50.000 16.60 0.00 42.48 6.86
3324 3917 2.034001 GGATCTTGGTTTAACGATCGCG 60.034 50.000 16.60 0.00 44.79 5.87
3325 3918 3.001330 CAGGATCTTGGTTTAACGATCGC 59.999 47.826 16.60 0.00 34.54 4.58
3326 3919 3.555956 CCAGGATCTTGGTTTAACGATCG 59.444 47.826 15.62 14.88 34.54 3.69
3341 3934 3.132289 TGACATCGTTAGGAACCAGGATC 59.868 47.826 0.00 0.00 0.00 3.36
3347 3940 3.587797 TGTCTGACATCGTTAGGAACC 57.412 47.619 6.36 0.00 0.00 3.62
3349 3942 4.637091 TCGTATGTCTGACATCGTTAGGAA 59.363 41.667 25.35 4.14 39.88 3.36
3356 3949 5.399596 CAGGTTTATCGTATGTCTGACATCG 59.600 44.000 25.35 24.49 39.88 3.84
3361 3954 4.707934 TGGTCAGGTTTATCGTATGTCTGA 59.292 41.667 0.00 0.00 0.00 3.27
3367 3960 4.441079 CCTTCGTGGTCAGGTTTATCGTAT 60.441 45.833 0.00 0.00 0.00 3.06
3372 3965 2.904434 AGTCCTTCGTGGTCAGGTTTAT 59.096 45.455 0.00 0.00 37.07 1.40
3374 3967 1.129058 AGTCCTTCGTGGTCAGGTTT 58.871 50.000 0.00 0.00 37.07 3.27
3391 3984 2.040278 TCAATTGCTTGCAGGGACTAGT 59.960 45.455 0.00 0.00 34.60 2.57
3400 3993 5.518848 TTCTTTCTTCTCAATTGCTTGCA 57.481 34.783 0.00 0.00 32.11 4.08
3416 4009 8.304202 AGATCGCATGTCATAGTTATTCTTTC 57.696 34.615 0.00 0.00 0.00 2.62
3417 4010 9.764363 TTAGATCGCATGTCATAGTTATTCTTT 57.236 29.630 0.00 0.00 0.00 2.52
3418 4011 9.764363 TTTAGATCGCATGTCATAGTTATTCTT 57.236 29.630 0.00 0.00 0.00 2.52
3432 4025 4.926860 TCCGCAATATTTAGATCGCATG 57.073 40.909 0.00 0.00 0.00 4.06
3436 4029 9.899226 TCATCTATATCCGCAATATTTAGATCG 57.101 33.333 2.08 0.00 29.06 3.69
3469 4062 8.342634 GCCTCTGTATTATCTCTTCGAGATATC 58.657 40.741 12.79 0.00 46.70 1.63
3477 4070 6.603940 ATCAGGCCTCTGTATTATCTCTTC 57.396 41.667 0.00 0.00 41.59 2.87
3485 4078 3.266772 TCCAACAATCAGGCCTCTGTATT 59.733 43.478 0.00 0.00 41.59 1.89
3489 4082 1.271543 TGTCCAACAATCAGGCCTCTG 60.272 52.381 0.00 2.90 42.21 3.35
3492 4085 0.478072 TGTGTCCAACAATCAGGCCT 59.522 50.000 0.00 0.00 35.24 5.19
3493 4086 1.327303 TTGTGTCCAACAATCAGGCC 58.673 50.000 0.00 0.00 43.96 5.19
3555 4169 9.232473 AGAGCTTTGTCTTAGGGTTAAATTTAG 57.768 33.333 0.00 0.00 0.00 1.85
3561 4176 6.708285 CCTTAGAGCTTTGTCTTAGGGTTAA 58.292 40.000 0.00 0.00 38.98 2.01
3571 4186 4.984146 ATATCCCCCTTAGAGCTTTGTC 57.016 45.455 0.00 0.00 0.00 3.18
3574 4189 6.624021 TCCTTAAATATCCCCCTTAGAGCTTT 59.376 38.462 0.00 0.00 0.00 3.51
3579 4194 6.331846 CCTCTCCTTAAATATCCCCCTTAGA 58.668 44.000 0.00 0.00 0.00 2.10
3589 4204 3.913163 CCCCTCTGCCTCTCCTTAAATAT 59.087 47.826 0.00 0.00 0.00 1.28
3590 4205 3.318313 CCCCTCTGCCTCTCCTTAAATA 58.682 50.000 0.00 0.00 0.00 1.40
3655 4270 9.274206 GAATCTATACATAAGGAGGAAACCAAC 57.726 37.037 0.00 0.00 0.00 3.77
3708 4323 5.353394 TCGAGCTAGGTCCATGTATTTTT 57.647 39.130 16.06 0.00 0.00 1.94
3709 4324 5.353394 TTCGAGCTAGGTCCATGTATTTT 57.647 39.130 16.06 0.00 0.00 1.82
3720 4335 3.452627 ACCATCTCATTTTCGAGCTAGGT 59.547 43.478 0.00 0.00 32.75 3.08
3721 4336 3.806521 CACCATCTCATTTTCGAGCTAGG 59.193 47.826 0.00 0.00 32.75 3.02
3724 4339 2.012673 GCACCATCTCATTTTCGAGCT 58.987 47.619 0.00 0.00 32.75 4.09
3753 4368 5.416083 TCATAAACTGTCCGTAACCATCTG 58.584 41.667 0.00 0.00 0.00 2.90
3754 4369 5.670792 TCATAAACTGTCCGTAACCATCT 57.329 39.130 0.00 0.00 0.00 2.90
3755 4370 5.873164 ACTTCATAAACTGTCCGTAACCATC 59.127 40.000 0.00 0.00 0.00 3.51
3769 4384 9.209175 GGGAGTACATGATATGACTTCATAAAC 57.791 37.037 0.00 2.46 41.60 2.01
3770 4385 9.159254 AGGGAGTACATGATATGACTTCATAAA 57.841 33.333 0.00 0.00 41.60 1.40
3780 4397 4.082845 AGACGGAGGGAGTACATGATATG 58.917 47.826 0.00 0.00 0.00 1.78
3781 4398 4.202577 TGAGACGGAGGGAGTACATGATAT 60.203 45.833 0.00 0.00 0.00 1.63
3786 4403 2.291670 ACTTGAGACGGAGGGAGTACAT 60.292 50.000 0.00 0.00 0.00 2.29
3791 4408 0.969894 ACAACTTGAGACGGAGGGAG 59.030 55.000 0.00 0.00 0.00 4.30
3792 4409 1.891150 GTACAACTTGAGACGGAGGGA 59.109 52.381 0.00 0.00 0.00 4.20
3793 4410 1.893801 AGTACAACTTGAGACGGAGGG 59.106 52.381 0.00 0.00 0.00 4.30
3794 4411 2.557056 TCAGTACAACTTGAGACGGAGG 59.443 50.000 0.00 0.00 0.00 4.30
3795 4412 3.253677 ACTCAGTACAACTTGAGACGGAG 59.746 47.826 14.78 18.07 36.27 4.63
3796 4413 3.220110 ACTCAGTACAACTTGAGACGGA 58.780 45.455 14.78 0.00 31.97 4.69
3797 4414 3.644884 ACTCAGTACAACTTGAGACGG 57.355 47.619 14.78 0.00 31.97 4.79
3798 4415 5.041287 TCAAACTCAGTACAACTTGAGACG 58.959 41.667 14.78 4.89 31.97 4.18
3799 4416 6.273825 TCTCAAACTCAGTACAACTTGAGAC 58.726 40.000 12.88 0.00 42.19 3.36
3800 4417 6.465439 TCTCAAACTCAGTACAACTTGAGA 57.535 37.500 12.88 12.88 43.85 3.27
3801 4418 8.085296 AGTATCTCAAACTCAGTACAACTTGAG 58.915 37.037 9.18 9.18 40.60 3.02
3802 4419 7.952671 AGTATCTCAAACTCAGTACAACTTGA 58.047 34.615 0.00 0.00 0.00 3.02
3803 4420 8.594881 AAGTATCTCAAACTCAGTACAACTTG 57.405 34.615 0.00 0.00 0.00 3.16
3813 4430 9.140286 CGTCTCAAAATAAGTATCTCAAACTCA 57.860 33.333 0.00 0.00 0.00 3.41
3814 4431 8.596380 CCGTCTCAAAATAAGTATCTCAAACTC 58.404 37.037 0.00 0.00 0.00 3.01
3815 4432 8.311836 TCCGTCTCAAAATAAGTATCTCAAACT 58.688 33.333 0.00 0.00 0.00 2.66
3816 4433 8.475331 TCCGTCTCAAAATAAGTATCTCAAAC 57.525 34.615 0.00 0.00 0.00 2.93


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.