Multiple sequence alignment - TraesCS2B01G439700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G439700 chr2B 100.000 2326 0 0 1 2326 631600807 631603132 0.000000e+00 4296.0
1 TraesCS2B01G439700 chr2B 80.263 304 30 19 879 1166 631700465 631700754 3.920000e-48 202.0
2 TraesCS2B01G439700 chr2D 89.846 1753 94 36 173 1854 531710952 531712691 0.000000e+00 2174.0
3 TraesCS2B01G439700 chr2D 83.056 301 25 17 879 1166 531895280 531895567 1.380000e-62 250.0
4 TraesCS2B01G439700 chr2D 95.455 132 6 0 1 132 531710383 531710514 6.510000e-51 211.0
5 TraesCS2B01G439700 chr2A 86.803 1955 130 45 1 1854 676370356 676372283 0.000000e+00 2063.0
6 TraesCS2B01G439700 chr2A 90.217 184 12 3 986 1166 676378855 676379035 3.860000e-58 235.0
7 TraesCS2B01G439700 chr3B 84.848 330 32 9 1980 2300 682234135 682233815 1.340000e-82 316.0
8 TraesCS2B01G439700 chr1B 84.472 322 35 4 1977 2290 643949986 643950300 1.040000e-78 303.0
9 TraesCS2B01G439700 chr5D 83.086 337 29 14 1976 2304 9751083 9751399 4.890000e-72 281.0
10 TraesCS2B01G439700 chr1D 82.493 337 31 15 1976 2304 228745583 228745899 1.060000e-68 270.0
11 TraesCS2B01G439700 chr1D 83.025 324 27 13 1988 2300 254561787 254561481 3.810000e-68 268.0
12 TraesCS2B01G439700 chr1D 81.306 337 35 13 1976 2304 208570457 208570141 4.960000e-62 248.0
13 TraesCS2B01G439700 chr4A 83.613 238 18 6 1976 2204 608363658 608363883 1.090000e-48 204.0
14 TraesCS2B01G439700 chr7A 93.750 48 3 0 1976 2023 712411633 712411586 3.210000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G439700 chr2B 631600807 631603132 2325 False 4296.0 4296 100.0000 1 2326 1 chr2B.!!$F1 2325
1 TraesCS2B01G439700 chr2D 531710383 531712691 2308 False 1192.5 2174 92.6505 1 1854 2 chr2D.!!$F2 1853
2 TraesCS2B01G439700 chr2A 676370356 676372283 1927 False 2063.0 2063 86.8030 1 1854 1 chr2A.!!$F1 1853

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
984 1435 0.03601 TGCCAGCTTCCTACTTCAGC 60.036 55.0 0.0 0.0 0.0 4.26 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2152 2651 0.036875 AAGGGAAAAGGAGCGGTGAG 59.963 55.0 0.0 0.0 0.0 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 4.998051 AGGTTTTGGCAATCTTCCTTCTA 58.002 39.130 0.00 0.00 0.00 2.10
36 37 7.094592 GGCAATCTTCCTTCTATAAATAGCACC 60.095 40.741 0.00 0.00 0.00 5.01
135 511 4.574828 ACTGTGACGTTGAGCTTGTATTTT 59.425 37.500 0.00 0.00 0.00 1.82
136 512 5.090652 TGTGACGTTGAGCTTGTATTTTC 57.909 39.130 0.00 0.00 0.00 2.29
246 646 2.435685 AAACGCGTGCTGAAATATCG 57.564 45.000 14.98 0.00 0.00 2.92
256 656 5.353938 GTGCTGAAATATCGTGTAGGGTTA 58.646 41.667 0.00 0.00 0.00 2.85
270 670 5.034200 TGTAGGGTTAATGTGTAGGTCCAT 58.966 41.667 0.00 0.00 0.00 3.41
274 674 4.164604 GGGTTAATGTGTAGGTCCATGGTA 59.835 45.833 12.58 0.00 0.00 3.25
371 774 1.226746 CAAGAAGAAAAGACGCCGGT 58.773 50.000 1.90 0.00 0.00 5.28
450 853 5.076057 AGTGCCTACTACTACCACCATAT 57.924 43.478 0.00 0.00 34.74 1.78
479 886 7.148407 CCACATTAGAAAAACAATCTCGTAGCT 60.148 37.037 0.00 0.00 0.00 3.32
524 931 1.165270 CCCGATTCGCTTGGAACTTT 58.835 50.000 0.00 0.00 37.50 2.66
551 958 2.740714 GCGCATCTCAACGGTGGAC 61.741 63.158 0.30 0.00 0.00 4.02
784 1195 4.865761 GCCGTCGCCGTGCATAGA 62.866 66.667 0.00 0.00 32.67 1.98
827 1258 5.631512 CCTTTGAAAATTTTGGATAACGCGA 59.368 36.000 15.93 0.00 0.00 5.87
842 1273 6.580416 GGATAACGCGACTAAGTAATCCTAAC 59.420 42.308 15.93 0.00 31.05 2.34
844 1275 4.918037 ACGCGACTAAGTAATCCTAACAG 58.082 43.478 15.93 0.00 0.00 3.16
845 1276 3.729716 CGCGACTAAGTAATCCTAACAGC 59.270 47.826 0.00 0.00 0.00 4.40
846 1277 4.497674 CGCGACTAAGTAATCCTAACAGCT 60.498 45.833 0.00 0.00 0.00 4.24
847 1278 5.349809 GCGACTAAGTAATCCTAACAGCTT 58.650 41.667 0.00 0.00 0.00 3.74
848 1279 5.459434 GCGACTAAGTAATCCTAACAGCTTC 59.541 44.000 0.00 0.00 0.00 3.86
849 1280 5.978322 CGACTAAGTAATCCTAACAGCTTCC 59.022 44.000 0.00 0.00 0.00 3.46
850 1281 6.183360 CGACTAAGTAATCCTAACAGCTTCCT 60.183 42.308 0.00 0.00 0.00 3.36
851 1282 7.114866 ACTAAGTAATCCTAACAGCTTCCTC 57.885 40.000 0.00 0.00 0.00 3.71
852 1283 4.657436 AGTAATCCTAACAGCTTCCTCG 57.343 45.455 0.00 0.00 0.00 4.63
854 1285 0.466124 ATCCTAACAGCTTCCTCGCC 59.534 55.000 0.00 0.00 0.00 5.54
890 1341 5.395778 CAGCTCGTCGTGTCACTATATAAAC 59.604 44.000 0.65 0.00 0.00 2.01
902 1353 4.754618 CACTATATAAACGGCAATGCTCCA 59.245 41.667 4.82 0.00 0.00 3.86
919 1370 5.181009 TGCTCCAATAGAAGAACATCACAG 58.819 41.667 0.00 0.00 0.00 3.66
934 1385 0.179166 CACAGAGTCGAGAGCAGAGC 60.179 60.000 0.00 0.00 0.00 4.09
935 1386 0.607762 ACAGAGTCGAGAGCAGAGCA 60.608 55.000 0.00 0.00 0.00 4.26
937 1388 0.322456 AGAGTCGAGAGCAGAGCACT 60.322 55.000 0.00 0.00 31.15 4.40
938 1389 0.525761 GAGTCGAGAGCAGAGCACTT 59.474 55.000 0.00 0.00 28.14 3.16
939 1390 0.243365 AGTCGAGAGCAGAGCACTTG 59.757 55.000 0.00 0.00 33.08 3.16
940 1391 0.735632 GTCGAGAGCAGAGCACTTGG 60.736 60.000 4.28 0.00 32.75 3.61
941 1392 1.181741 TCGAGAGCAGAGCACTTGGT 61.182 55.000 4.28 0.00 32.75 3.67
942 1393 0.528017 CGAGAGCAGAGCACTTGGTA 59.472 55.000 0.00 0.00 28.14 3.25
952 1403 0.921347 GCACTTGGTACGTAGCATCG 59.079 55.000 26.48 21.40 33.26 3.84
959 1410 1.197910 GTACGTAGCATCGCCAAGTC 58.802 55.000 0.00 0.00 0.00 3.01
961 1412 0.458543 ACGTAGCATCGCCAAGTCTG 60.459 55.000 0.00 0.00 0.00 3.51
971 1422 2.960170 CAAGTCTGCCTTGCCAGC 59.040 61.111 0.00 0.00 43.84 4.85
977 1428 1.200760 TCTGCCTTGCCAGCTTCCTA 61.201 55.000 0.00 0.00 32.87 2.94
984 1435 0.036010 TGCCAGCTTCCTACTTCAGC 60.036 55.000 0.00 0.00 0.00 4.26
1106 1581 1.521681 CCGCTAACTACCAGCAGCC 60.522 63.158 0.00 0.00 39.04 4.85
1330 1812 1.662629 CGACATGTGCTTCTGATCACC 59.337 52.381 1.15 0.00 32.51 4.02
1375 1857 4.471373 CAATCCGACGATGATCTACTCAG 58.529 47.826 0.00 0.00 37.28 3.35
1380 1862 3.558006 CGACGATGATCTACTCAGTCAGT 59.442 47.826 0.00 0.00 37.28 3.41
1448 1930 3.262151 TGTTCGGGTGGAGATTTGTATGA 59.738 43.478 0.00 0.00 0.00 2.15
1504 1990 5.050091 GGCTTCATTCTGTATCACGGTATTG 60.050 44.000 0.00 0.00 0.00 1.90
1505 1991 5.523916 GCTTCATTCTGTATCACGGTATTGT 59.476 40.000 0.00 0.00 0.00 2.71
1506 1992 6.037172 GCTTCATTCTGTATCACGGTATTGTT 59.963 38.462 0.00 0.00 0.00 2.83
1507 1993 7.223971 GCTTCATTCTGTATCACGGTATTGTTA 59.776 37.037 0.00 0.00 0.00 2.41
1508 1994 9.093970 CTTCATTCTGTATCACGGTATTGTTAA 57.906 33.333 0.00 0.00 0.00 2.01
1509 1995 9.607988 TTCATTCTGTATCACGGTATTGTTAAT 57.392 29.630 0.00 0.00 0.00 1.40
1510 1996 9.607988 TCATTCTGTATCACGGTATTGTTAATT 57.392 29.630 0.00 0.00 0.00 1.40
1592 2078 2.724977 TGCGAGAATTCTTGACGACT 57.275 45.000 24.41 0.00 0.00 4.18
1607 2093 2.982470 GACGACTTACCGACGATTTTGT 59.018 45.455 0.00 0.00 34.89 2.83
1618 2104 4.260620 CCGACGATTTTGTTTGTCTGTTCT 60.261 41.667 0.00 0.00 0.00 3.01
1651 2150 6.524101 AAGTGTTTTTGTGAGGTTACATGT 57.476 33.333 2.69 2.69 0.00 3.21
1676 2175 9.443283 GTATTACTTTTGATGATCTGCATGTTC 57.557 33.333 0.00 0.00 37.34 3.18
1696 2195 4.970860 TCCAAAAATTGCCATTTCCTCA 57.029 36.364 0.00 0.00 30.80 3.86
1697 2196 5.301835 TCCAAAAATTGCCATTTCCTCAA 57.698 34.783 0.00 0.00 30.80 3.02
1757 2256 9.326413 CATACTAATATTTTGTTCCGAGAAGGT 57.674 33.333 0.00 0.00 41.99 3.50
1764 2263 2.313317 TGTTCCGAGAAGGTGTAGTGT 58.687 47.619 0.00 0.00 41.99 3.55
1786 2285 2.664081 GGAGGCACTGGGGTCTCAG 61.664 68.421 6.79 0.00 41.55 3.35
1787 2286 1.610673 GAGGCACTGGGGTCTCAGA 60.611 63.158 4.68 0.00 41.55 3.27
1789 2288 0.339859 AGGCACTGGGGTCTCAGATA 59.660 55.000 4.68 0.00 37.18 1.98
1799 2298 2.572104 GGGTCTCAGATACAAAGTGGGT 59.428 50.000 0.00 0.00 0.00 4.51
1802 2301 3.192844 GTCTCAGATACAAAGTGGGTCGA 59.807 47.826 0.00 0.00 0.00 4.20
1854 2353 1.238439 CAACCGCACCTTCACTTCAT 58.762 50.000 0.00 0.00 0.00 2.57
1855 2354 1.069022 CAACCGCACCTTCACTTCATG 60.069 52.381 0.00 0.00 0.00 3.07
1856 2355 0.606401 ACCGCACCTTCACTTCATGG 60.606 55.000 0.00 0.00 0.00 3.66
1857 2356 1.503542 CGCACCTTCACTTCATGGC 59.496 57.895 0.00 0.00 0.00 4.40
1858 2357 1.236616 CGCACCTTCACTTCATGGCA 61.237 55.000 0.00 0.00 0.00 4.92
1859 2358 0.524862 GCACCTTCACTTCATGGCAG 59.475 55.000 0.00 0.00 0.00 4.85
1860 2359 1.171308 CACCTTCACTTCATGGCAGG 58.829 55.000 0.00 0.00 35.98 4.85
1861 2360 0.038744 ACCTTCACTTCATGGCAGGG 59.961 55.000 0.00 0.00 34.79 4.45
1862 2361 1.318158 CCTTCACTTCATGGCAGGGC 61.318 60.000 0.00 0.00 0.00 5.19
1917 2416 3.726004 CCCAAAATTGAGGGGCCC 58.274 61.111 17.12 17.12 41.58 5.80
1918 2417 1.995066 CCCAAAATTGAGGGGCCCC 60.995 63.158 35.90 35.90 41.58 5.80
1919 2418 2.358372 CCAAAATTGAGGGGCCCCG 61.358 63.158 35.78 18.11 41.95 5.73
1920 2419 2.683572 AAAATTGAGGGGCCCCGC 60.684 61.111 36.15 36.15 41.95 6.13
1936 2435 4.230002 GCCCCAGGTATGCGCGTA 62.230 66.667 8.43 4.92 0.00 4.42
1937 2436 2.029073 CCCCAGGTATGCGCGTAG 59.971 66.667 10.19 0.00 0.00 3.51
1938 2437 2.029073 CCCAGGTATGCGCGTAGG 59.971 66.667 10.19 8.00 0.00 3.18
1939 2438 2.661866 CCAGGTATGCGCGTAGGC 60.662 66.667 10.19 0.00 0.00 3.93
1940 2439 2.417516 CAGGTATGCGCGTAGGCT 59.582 61.111 10.19 0.00 36.88 4.58
1941 2440 1.951130 CAGGTATGCGCGTAGGCTG 60.951 63.158 10.19 0.63 36.88 4.85
1942 2441 2.106332 GGTATGCGCGTAGGCTGT 59.894 61.111 10.19 0.00 36.88 4.40
1943 2442 2.237751 GGTATGCGCGTAGGCTGTG 61.238 63.158 10.19 0.00 36.88 3.66
1944 2443 2.106131 TATGCGCGTAGGCTGTGG 59.894 61.111 8.43 0.00 36.88 4.17
1948 2447 4.435436 CGCGTAGGCTGTGGCAGA 62.435 66.667 5.78 0.00 40.87 4.26
1949 2448 2.047274 GCGTAGGCTGTGGCAGAA 60.047 61.111 0.00 0.00 40.87 3.02
1950 2449 1.671054 GCGTAGGCTGTGGCAGAAA 60.671 57.895 0.00 0.00 40.87 2.52
1951 2450 1.026718 GCGTAGGCTGTGGCAGAAAT 61.027 55.000 0.00 0.00 40.87 2.17
1952 2451 1.453155 CGTAGGCTGTGGCAGAAATT 58.547 50.000 0.00 0.00 40.87 1.82
1953 2452 1.812571 CGTAGGCTGTGGCAGAAATTT 59.187 47.619 0.00 0.00 40.87 1.82
1954 2453 2.228822 CGTAGGCTGTGGCAGAAATTTT 59.771 45.455 0.00 0.00 40.87 1.82
1955 2454 3.305335 CGTAGGCTGTGGCAGAAATTTTT 60.305 43.478 0.00 0.00 40.87 1.94
1956 2455 3.391506 AGGCTGTGGCAGAAATTTTTC 57.608 42.857 0.00 0.00 40.87 2.29
1958 2457 4.151883 AGGCTGTGGCAGAAATTTTTCTA 58.848 39.130 5.29 0.00 45.23 2.10
1959 2458 4.588528 AGGCTGTGGCAGAAATTTTTCTAA 59.411 37.500 5.29 0.00 45.23 2.10
1960 2459 5.246883 AGGCTGTGGCAGAAATTTTTCTAAT 59.753 36.000 5.29 0.00 45.23 1.73
1961 2460 6.437162 AGGCTGTGGCAGAAATTTTTCTAATA 59.563 34.615 5.29 0.00 45.23 0.98
1962 2461 6.753744 GGCTGTGGCAGAAATTTTTCTAATAG 59.246 38.462 5.29 4.38 45.23 1.73
1963 2462 7.362920 GGCTGTGGCAGAAATTTTTCTAATAGA 60.363 37.037 5.29 0.00 45.23 1.98
1964 2463 8.193438 GCTGTGGCAGAAATTTTTCTAATAGAT 58.807 33.333 5.29 0.00 45.23 1.98
1965 2464 9.512435 CTGTGGCAGAAATTTTTCTAATAGATG 57.488 33.333 5.29 0.00 45.23 2.90
1966 2465 8.469200 TGTGGCAGAAATTTTTCTAATAGATGG 58.531 33.333 5.29 0.00 45.23 3.51
1967 2466 8.686334 GTGGCAGAAATTTTTCTAATAGATGGA 58.314 33.333 5.29 0.00 45.23 3.41
1968 2467 8.686334 TGGCAGAAATTTTTCTAATAGATGGAC 58.314 33.333 5.29 0.00 45.23 4.02
1969 2468 8.907885 GGCAGAAATTTTTCTAATAGATGGACT 58.092 33.333 5.29 0.00 45.23 3.85
1970 2469 9.727627 GCAGAAATTTTTCTAATAGATGGACTG 57.272 33.333 5.29 0.00 45.23 3.51
1971 2470 9.727627 CAGAAATTTTTCTAATAGATGGACTGC 57.272 33.333 5.29 0.00 45.23 4.40
1972 2471 9.692325 AGAAATTTTTCTAATAGATGGACTGCT 57.308 29.630 3.76 0.00 45.17 4.24
1973 2472 9.727627 GAAATTTTTCTAATAGATGGACTGCTG 57.272 33.333 0.00 0.00 34.41 4.41
1974 2473 7.814264 ATTTTTCTAATAGATGGACTGCTGG 57.186 36.000 0.00 0.00 0.00 4.85
1975 2474 4.963318 TTCTAATAGATGGACTGCTGGG 57.037 45.455 0.00 0.00 0.00 4.45
1976 2475 2.634940 TCTAATAGATGGACTGCTGGGC 59.365 50.000 0.00 0.00 0.00 5.36
1977 2476 1.216064 AATAGATGGACTGCTGGGCA 58.784 50.000 0.00 0.00 36.92 5.36
2000 2499 2.124983 GCAGGAGGCAGCGATCAA 60.125 61.111 0.00 0.00 43.97 2.57
2001 2500 1.525535 GCAGGAGGCAGCGATCAAT 60.526 57.895 0.00 0.00 43.97 2.57
2002 2501 1.099879 GCAGGAGGCAGCGATCAATT 61.100 55.000 0.00 0.00 43.97 2.32
2003 2502 0.942962 CAGGAGGCAGCGATCAATTC 59.057 55.000 0.00 0.00 0.00 2.17
2004 2503 0.835941 AGGAGGCAGCGATCAATTCT 59.164 50.000 0.00 0.00 0.00 2.40
2005 2504 1.211457 AGGAGGCAGCGATCAATTCTT 59.789 47.619 0.00 0.00 0.00 2.52
2006 2505 2.019984 GGAGGCAGCGATCAATTCTTT 58.980 47.619 0.00 0.00 0.00 2.52
2007 2506 2.032675 GGAGGCAGCGATCAATTCTTTC 59.967 50.000 0.00 0.00 0.00 2.62
2008 2507 2.019984 AGGCAGCGATCAATTCTTTCC 58.980 47.619 0.00 0.00 0.00 3.13
2009 2508 2.019984 GGCAGCGATCAATTCTTTCCT 58.980 47.619 0.00 0.00 0.00 3.36
2010 2509 3.118261 AGGCAGCGATCAATTCTTTCCTA 60.118 43.478 0.00 0.00 0.00 2.94
2011 2510 3.249559 GGCAGCGATCAATTCTTTCCTAG 59.750 47.826 0.00 0.00 0.00 3.02
2012 2511 3.873952 GCAGCGATCAATTCTTTCCTAGT 59.126 43.478 0.00 0.00 0.00 2.57
2013 2512 4.333926 GCAGCGATCAATTCTTTCCTAGTT 59.666 41.667 0.00 0.00 0.00 2.24
2014 2513 5.503194 GCAGCGATCAATTCTTTCCTAGTTC 60.503 44.000 0.00 0.00 0.00 3.01
2015 2514 5.582269 CAGCGATCAATTCTTTCCTAGTTCA 59.418 40.000 0.00 0.00 0.00 3.18
2016 2515 5.814705 AGCGATCAATTCTTTCCTAGTTCAG 59.185 40.000 0.00 0.00 0.00 3.02
2017 2516 5.582665 GCGATCAATTCTTTCCTAGTTCAGT 59.417 40.000 0.00 0.00 0.00 3.41
2018 2517 6.456181 GCGATCAATTCTTTCCTAGTTCAGTG 60.456 42.308 0.00 0.00 0.00 3.66
2019 2518 6.456181 CGATCAATTCTTTCCTAGTTCAGTGC 60.456 42.308 0.00 0.00 0.00 4.40
2020 2519 4.690748 TCAATTCTTTCCTAGTTCAGTGCG 59.309 41.667 0.00 0.00 0.00 5.34
2021 2520 3.746045 TTCTTTCCTAGTTCAGTGCGT 57.254 42.857 0.00 0.00 0.00 5.24
2022 2521 3.026630 TCTTTCCTAGTTCAGTGCGTG 57.973 47.619 0.00 0.00 0.00 5.34
2023 2522 2.626266 TCTTTCCTAGTTCAGTGCGTGA 59.374 45.455 0.00 0.00 0.00 4.35
2024 2523 3.069016 TCTTTCCTAGTTCAGTGCGTGAA 59.931 43.478 0.00 0.00 43.26 3.18
2048 2547 7.888250 AAAAATAGGAACTGATTGATCTCCC 57.112 36.000 0.00 0.00 41.52 4.30
2049 2548 6.838401 AAATAGGAACTGATTGATCTCCCT 57.162 37.500 0.00 0.00 41.52 4.20
2050 2549 6.838401 AATAGGAACTGATTGATCTCCCTT 57.162 37.500 0.00 0.00 41.52 3.95
2051 2550 4.500499 AGGAACTGATTGATCTCCCTTG 57.500 45.455 0.00 0.00 37.18 3.61
2052 2551 4.107072 AGGAACTGATTGATCTCCCTTGA 58.893 43.478 0.00 0.00 37.18 3.02
2053 2552 4.725810 AGGAACTGATTGATCTCCCTTGAT 59.274 41.667 0.00 0.00 37.18 2.57
2054 2553 5.193325 AGGAACTGATTGATCTCCCTTGATT 59.807 40.000 0.00 0.00 37.18 2.57
2055 2554 5.530543 GGAACTGATTGATCTCCCTTGATTC 59.469 44.000 0.00 0.00 0.00 2.52
2056 2555 5.046288 ACTGATTGATCTCCCTTGATTCC 57.954 43.478 0.00 0.00 0.00 3.01
2057 2556 4.141298 ACTGATTGATCTCCCTTGATTCCC 60.141 45.833 0.00 0.00 0.00 3.97
2058 2557 4.050037 TGATTGATCTCCCTTGATTCCCT 58.950 43.478 0.00 0.00 0.00 4.20
2059 2558 4.479796 TGATTGATCTCCCTTGATTCCCTT 59.520 41.667 0.00 0.00 0.00 3.95
2060 2559 4.953781 TTGATCTCCCTTGATTCCCTTT 57.046 40.909 0.00 0.00 0.00 3.11
2061 2560 4.510167 TGATCTCCCTTGATTCCCTTTC 57.490 45.455 0.00 0.00 0.00 2.62
2062 2561 4.114597 TGATCTCCCTTGATTCCCTTTCT 58.885 43.478 0.00 0.00 0.00 2.52
2063 2562 5.288687 TGATCTCCCTTGATTCCCTTTCTA 58.711 41.667 0.00 0.00 0.00 2.10
2064 2563 5.913534 TGATCTCCCTTGATTCCCTTTCTAT 59.086 40.000 0.00 0.00 0.00 1.98
2065 2564 6.391055 TGATCTCCCTTGATTCCCTTTCTATT 59.609 38.462 0.00 0.00 0.00 1.73
2066 2565 6.253946 TCTCCCTTGATTCCCTTTCTATTC 57.746 41.667 0.00 0.00 0.00 1.75
2067 2566 5.132816 TCTCCCTTGATTCCCTTTCTATTCC 59.867 44.000 0.00 0.00 0.00 3.01
2068 2567 4.793520 TCCCTTGATTCCCTTTCTATTCCA 59.206 41.667 0.00 0.00 0.00 3.53
2069 2568 5.436374 TCCCTTGATTCCCTTTCTATTCCAT 59.564 40.000 0.00 0.00 0.00 3.41
2070 2569 5.772169 CCCTTGATTCCCTTTCTATTCCATC 59.228 44.000 0.00 0.00 0.00 3.51
2071 2570 6.367983 CCTTGATTCCCTTTCTATTCCATCA 58.632 40.000 0.00 0.00 0.00 3.07
2072 2571 7.008941 CCTTGATTCCCTTTCTATTCCATCAT 58.991 38.462 0.00 0.00 0.00 2.45
2073 2572 7.039923 CCTTGATTCCCTTTCTATTCCATCATG 60.040 40.741 0.00 0.00 0.00 3.07
2074 2573 5.771666 TGATTCCCTTTCTATTCCATCATGC 59.228 40.000 0.00 0.00 0.00 4.06
2075 2574 4.794311 TCCCTTTCTATTCCATCATGCA 57.206 40.909 0.00 0.00 0.00 3.96
2076 2575 4.464008 TCCCTTTCTATTCCATCATGCAC 58.536 43.478 0.00 0.00 0.00 4.57
2077 2576 3.251729 CCCTTTCTATTCCATCATGCACG 59.748 47.826 0.00 0.00 0.00 5.34
2078 2577 3.304257 CCTTTCTATTCCATCATGCACGC 60.304 47.826 0.00 0.00 0.00 5.34
2079 2578 2.618442 TCTATTCCATCATGCACGCA 57.382 45.000 0.00 0.00 0.00 5.24
2080 2579 3.130280 TCTATTCCATCATGCACGCAT 57.870 42.857 0.00 0.00 37.08 4.73
2081 2580 3.479489 TCTATTCCATCATGCACGCATT 58.521 40.909 0.72 0.00 33.90 3.56
2082 2581 2.787601 ATTCCATCATGCACGCATTC 57.212 45.000 0.72 0.00 33.90 2.67
2083 2582 1.461559 TTCCATCATGCACGCATTCA 58.538 45.000 0.72 0.00 33.90 2.57
2084 2583 0.734309 TCCATCATGCACGCATTCAC 59.266 50.000 0.72 0.00 33.90 3.18
2085 2584 0.590481 CCATCATGCACGCATTCACG 60.590 55.000 0.72 0.00 33.90 4.35
2086 2585 1.063006 ATCATGCACGCATTCACGC 59.937 52.632 0.72 0.00 33.90 5.34
2087 2586 2.327002 ATCATGCACGCATTCACGCC 62.327 55.000 0.72 0.00 33.90 5.68
2088 2587 4.164664 ATGCACGCATTCACGCCG 62.165 61.111 0.00 0.00 36.19 6.46
2090 2589 3.483665 GCACGCATTCACGCCGTA 61.484 61.111 0.00 0.00 36.19 4.02
2091 2590 2.695055 CACGCATTCACGCCGTAG 59.305 61.111 0.00 0.00 36.19 3.51
2092 2591 2.092291 CACGCATTCACGCCGTAGT 61.092 57.895 0.00 0.00 36.19 2.73
2093 2592 1.373748 ACGCATTCACGCCGTAGTT 60.374 52.632 0.00 0.00 36.19 2.24
2094 2593 1.343821 CGCATTCACGCCGTAGTTC 59.656 57.895 0.00 0.00 0.00 3.01
2095 2594 1.713830 GCATTCACGCCGTAGTTCC 59.286 57.895 0.00 0.00 0.00 3.62
2096 2595 1.702491 GCATTCACGCCGTAGTTCCC 61.702 60.000 0.00 0.00 0.00 3.97
2097 2596 0.390603 CATTCACGCCGTAGTTCCCA 60.391 55.000 0.00 0.00 0.00 4.37
2098 2597 0.322322 ATTCACGCCGTAGTTCCCAA 59.678 50.000 0.00 0.00 0.00 4.12
2099 2598 0.106335 TTCACGCCGTAGTTCCCAAA 59.894 50.000 0.00 0.00 0.00 3.28
2100 2599 0.322322 TCACGCCGTAGTTCCCAAAT 59.678 50.000 0.00 0.00 0.00 2.32
2101 2600 1.549620 TCACGCCGTAGTTCCCAAATA 59.450 47.619 0.00 0.00 0.00 1.40
2102 2601 1.662122 CACGCCGTAGTTCCCAAATAC 59.338 52.381 0.00 0.00 0.00 1.89
2103 2602 1.292992 CGCCGTAGTTCCCAAATACC 58.707 55.000 0.00 0.00 0.00 2.73
2104 2603 1.405797 CGCCGTAGTTCCCAAATACCA 60.406 52.381 0.00 0.00 0.00 3.25
2105 2604 2.713877 GCCGTAGTTCCCAAATACCAA 58.286 47.619 0.00 0.00 0.00 3.67
2106 2605 3.284617 GCCGTAGTTCCCAAATACCAAT 58.715 45.455 0.00 0.00 0.00 3.16
2107 2606 3.697542 GCCGTAGTTCCCAAATACCAATT 59.302 43.478 0.00 0.00 0.00 2.32
2108 2607 4.158949 GCCGTAGTTCCCAAATACCAATTT 59.841 41.667 0.00 0.00 35.65 1.82
2109 2608 5.677852 GCCGTAGTTCCCAAATACCAATTTC 60.678 44.000 0.00 0.00 32.87 2.17
2110 2609 5.163591 CCGTAGTTCCCAAATACCAATTTCC 60.164 44.000 0.00 0.00 32.87 3.13
2111 2610 5.163591 CGTAGTTCCCAAATACCAATTTCCC 60.164 44.000 0.00 0.00 32.87 3.97
2112 2611 4.757692 AGTTCCCAAATACCAATTTCCCA 58.242 39.130 0.00 0.00 32.87 4.37
2113 2612 5.349690 AGTTCCCAAATACCAATTTCCCAT 58.650 37.500 0.00 0.00 32.87 4.00
2114 2613 5.425217 AGTTCCCAAATACCAATTTCCCATC 59.575 40.000 0.00 0.00 32.87 3.51
2115 2614 5.219468 TCCCAAATACCAATTTCCCATCT 57.781 39.130 0.00 0.00 32.87 2.90
2116 2615 4.961730 TCCCAAATACCAATTTCCCATCTG 59.038 41.667 0.00 0.00 32.87 2.90
2117 2616 4.716287 CCCAAATACCAATTTCCCATCTGT 59.284 41.667 0.00 0.00 32.87 3.41
2118 2617 5.395546 CCCAAATACCAATTTCCCATCTGTG 60.396 44.000 0.00 0.00 32.87 3.66
2119 2618 5.395546 CCAAATACCAATTTCCCATCTGTGG 60.396 44.000 0.00 0.00 37.97 4.17
2120 2619 1.560505 ACCAATTTCCCATCTGTGGC 58.439 50.000 0.00 0.00 44.62 5.01
2121 2620 0.826062 CCAATTTCCCATCTGTGGCC 59.174 55.000 0.00 0.00 44.62 5.36
2122 2621 0.457035 CAATTTCCCATCTGTGGCCG 59.543 55.000 0.00 0.00 44.62 6.13
2123 2622 1.322538 AATTTCCCATCTGTGGCCGC 61.323 55.000 10.11 10.11 44.62 6.53
2124 2623 3.936772 TTTCCCATCTGTGGCCGCC 62.937 63.158 15.15 1.04 44.62 6.13
2143 2642 4.535425 ACGCTTCGTCTCTTCGTG 57.465 55.556 0.00 0.00 33.69 4.35
2144 2643 1.947013 ACGCTTCGTCTCTTCGTGA 59.053 52.632 0.00 0.00 33.69 4.35
2145 2644 0.385723 ACGCTTCGTCTCTTCGTGAC 60.386 55.000 0.00 0.00 33.69 3.67
2146 2645 0.110147 CGCTTCGTCTCTTCGTGACT 60.110 55.000 0.00 0.00 32.70 3.41
2147 2646 1.332178 GCTTCGTCTCTTCGTGACTG 58.668 55.000 0.00 0.00 32.70 3.51
2148 2647 1.332178 CTTCGTCTCTTCGTGACTGC 58.668 55.000 0.00 0.00 32.70 4.40
2149 2648 0.385598 TTCGTCTCTTCGTGACTGCG 60.386 55.000 0.00 0.00 32.70 5.18
2150 2649 2.429351 CGTCTCTTCGTGACTGCGC 61.429 63.158 0.00 0.00 32.70 6.09
2152 2651 3.832171 CTCTTCGTGACTGCGCGC 61.832 66.667 27.26 27.26 46.94 6.86
2153 2652 4.342987 TCTTCGTGACTGCGCGCT 62.343 61.111 33.29 13.70 46.94 5.92
2154 2653 3.832171 CTTCGTGACTGCGCGCTC 61.832 66.667 33.29 22.66 46.94 5.03
2155 2654 4.639171 TTCGTGACTGCGCGCTCA 62.639 61.111 33.29 25.16 46.94 4.26
2167 2666 3.169198 CGCTCACCGCTCCTTTTC 58.831 61.111 0.00 0.00 36.13 2.29
2168 2667 2.391389 CGCTCACCGCTCCTTTTCC 61.391 63.158 0.00 0.00 36.13 3.13
2169 2668 2.041115 GCTCACCGCTCCTTTTCCC 61.041 63.158 0.00 0.00 35.14 3.97
2170 2669 1.679898 CTCACCGCTCCTTTTCCCT 59.320 57.895 0.00 0.00 0.00 4.20
2171 2670 0.036875 CTCACCGCTCCTTTTCCCTT 59.963 55.000 0.00 0.00 0.00 3.95
2172 2671 0.476771 TCACCGCTCCTTTTCCCTTT 59.523 50.000 0.00 0.00 0.00 3.11
2173 2672 1.133606 TCACCGCTCCTTTTCCCTTTT 60.134 47.619 0.00 0.00 0.00 2.27
2174 2673 2.106857 TCACCGCTCCTTTTCCCTTTTA 59.893 45.455 0.00 0.00 0.00 1.52
2175 2674 3.089284 CACCGCTCCTTTTCCCTTTTAT 58.911 45.455 0.00 0.00 0.00 1.40
2176 2675 3.128764 CACCGCTCCTTTTCCCTTTTATC 59.871 47.826 0.00 0.00 0.00 1.75
2177 2676 2.688446 CCGCTCCTTTTCCCTTTTATCC 59.312 50.000 0.00 0.00 0.00 2.59
2178 2677 3.621558 CGCTCCTTTTCCCTTTTATCCT 58.378 45.455 0.00 0.00 0.00 3.24
2179 2678 3.378427 CGCTCCTTTTCCCTTTTATCCTG 59.622 47.826 0.00 0.00 0.00 3.86
2180 2679 4.600062 GCTCCTTTTCCCTTTTATCCTGA 58.400 43.478 0.00 0.00 0.00 3.86
2181 2680 5.016831 GCTCCTTTTCCCTTTTATCCTGAA 58.983 41.667 0.00 0.00 0.00 3.02
2182 2681 5.658634 GCTCCTTTTCCCTTTTATCCTGAAT 59.341 40.000 0.00 0.00 0.00 2.57
2183 2682 6.183360 GCTCCTTTTCCCTTTTATCCTGAATC 60.183 42.308 0.00 0.00 0.00 2.52
2184 2683 6.799827 TCCTTTTCCCTTTTATCCTGAATCA 58.200 36.000 0.00 0.00 0.00 2.57
2185 2684 7.245292 TCCTTTTCCCTTTTATCCTGAATCAA 58.755 34.615 0.00 0.00 0.00 2.57
2186 2685 7.732593 TCCTTTTCCCTTTTATCCTGAATCAAA 59.267 33.333 0.00 0.00 0.00 2.69
2187 2686 8.542926 CCTTTTCCCTTTTATCCTGAATCAAAT 58.457 33.333 0.00 0.00 0.00 2.32
2192 2691 9.367160 TCCCTTTTATCCTGAATCAAATATTCC 57.633 33.333 0.00 0.00 0.00 3.01
2193 2692 9.372189 CCCTTTTATCCTGAATCAAATATTCCT 57.628 33.333 0.00 0.00 0.00 3.36
2196 2695 8.940397 TTTATCCTGAATCAAATATTCCTCCC 57.060 34.615 0.00 0.00 0.00 4.30
2197 2696 6.793518 ATCCTGAATCAAATATTCCTCCCT 57.206 37.500 0.00 0.00 0.00 4.20
2198 2697 7.895144 ATCCTGAATCAAATATTCCTCCCTA 57.105 36.000 0.00 0.00 0.00 3.53
2199 2698 7.705912 TCCTGAATCAAATATTCCTCCCTAA 57.294 36.000 0.00 0.00 0.00 2.69
2200 2699 8.293027 TCCTGAATCAAATATTCCTCCCTAAT 57.707 34.615 0.00 0.00 0.00 1.73
2201 2700 8.736675 TCCTGAATCAAATATTCCTCCCTAATT 58.263 33.333 0.00 0.00 0.00 1.40
2202 2701 9.018582 CCTGAATCAAATATTCCTCCCTAATTC 57.981 37.037 0.00 0.00 0.00 2.17
2203 2702 9.578576 CTGAATCAAATATTCCTCCCTAATTCA 57.421 33.333 0.00 0.00 0.00 2.57
2204 2703 9.934784 TGAATCAAATATTCCTCCCTAATTCAA 57.065 29.630 0.00 0.00 0.00 2.69
2213 2712 8.753497 ATTCCTCCCTAATTCAAATAGTTCAC 57.247 34.615 0.00 0.00 0.00 3.18
2214 2713 6.659824 TCCTCCCTAATTCAAATAGTTCACC 58.340 40.000 0.00 0.00 0.00 4.02
2215 2714 5.527582 CCTCCCTAATTCAAATAGTTCACCG 59.472 44.000 0.00 0.00 0.00 4.94
2216 2715 6.302535 TCCCTAATTCAAATAGTTCACCGA 57.697 37.500 0.00 0.00 0.00 4.69
2217 2716 6.895782 TCCCTAATTCAAATAGTTCACCGAT 58.104 36.000 0.00 0.00 0.00 4.18
2218 2717 7.343357 TCCCTAATTCAAATAGTTCACCGATT 58.657 34.615 0.00 0.00 0.00 3.34
2219 2718 7.832187 TCCCTAATTCAAATAGTTCACCGATTT 59.168 33.333 0.00 0.00 0.00 2.17
2220 2719 8.129211 CCCTAATTCAAATAGTTCACCGATTTC 58.871 37.037 0.00 0.00 0.00 2.17
2221 2720 8.673711 CCTAATTCAAATAGTTCACCGATTTCA 58.326 33.333 0.00 0.00 0.00 2.69
2224 2723 9.927668 AATTCAAATAGTTCACCGATTTCAATT 57.072 25.926 0.00 0.00 0.00 2.32
2225 2724 8.964420 TTCAAATAGTTCACCGATTTCAATTC 57.036 30.769 0.00 0.00 0.00 2.17
2226 2725 8.335532 TCAAATAGTTCACCGATTTCAATTCT 57.664 30.769 0.00 0.00 0.00 2.40
2227 2726 8.450964 TCAAATAGTTCACCGATTTCAATTCTC 58.549 33.333 0.00 0.00 0.00 2.87
2228 2727 6.927294 ATAGTTCACCGATTTCAATTCTCC 57.073 37.500 0.00 0.00 0.00 3.71
2229 2728 3.684788 AGTTCACCGATTTCAATTCTCCG 59.315 43.478 0.00 0.00 0.00 4.63
2230 2729 2.627945 TCACCGATTTCAATTCTCCGG 58.372 47.619 0.00 0.00 42.30 5.14
2231 2730 1.064060 CACCGATTTCAATTCTCCGGC 59.936 52.381 0.00 0.00 40.48 6.13
2232 2731 0.304705 CCGATTTCAATTCTCCGGCG 59.695 55.000 0.00 0.00 0.00 6.46
2233 2732 0.316196 CGATTTCAATTCTCCGGCGC 60.316 55.000 0.00 0.00 0.00 6.53
2234 2733 1.017387 GATTTCAATTCTCCGGCGCT 58.983 50.000 7.64 0.00 0.00 5.92
2235 2734 0.734889 ATTTCAATTCTCCGGCGCTG 59.265 50.000 9.96 9.96 0.00 5.18
2236 2735 0.605319 TTTCAATTCTCCGGCGCTGT 60.605 50.000 16.49 0.00 0.00 4.40
2237 2736 1.019278 TTCAATTCTCCGGCGCTGTC 61.019 55.000 16.49 0.00 0.00 3.51
2238 2737 2.509336 AATTCTCCGGCGCTGTCG 60.509 61.111 16.49 6.51 39.07 4.35
2248 2747 4.185413 CGCTGTCGCAACACCTAT 57.815 55.556 0.00 0.00 35.30 2.57
2249 2748 2.456000 CGCTGTCGCAACACCTATT 58.544 52.632 0.00 0.00 35.30 1.73
2250 2749 0.796312 CGCTGTCGCAACACCTATTT 59.204 50.000 0.00 0.00 35.30 1.40
2251 2750 1.464023 CGCTGTCGCAACACCTATTTG 60.464 52.381 0.00 0.00 35.30 2.32
2252 2751 1.729149 GCTGTCGCAACACCTATTTGC 60.729 52.381 0.00 0.00 44.94 3.68
2253 2752 1.806542 CTGTCGCAACACCTATTTGCT 59.193 47.619 5.60 0.00 45.99 3.91
2254 2753 1.804151 TGTCGCAACACCTATTTGCTC 59.196 47.619 5.60 0.29 45.99 4.26
2255 2754 2.076863 GTCGCAACACCTATTTGCTCT 58.923 47.619 5.60 0.00 45.99 4.09
2256 2755 2.094417 GTCGCAACACCTATTTGCTCTC 59.906 50.000 5.60 0.00 45.99 3.20
2257 2756 2.028112 TCGCAACACCTATTTGCTCTCT 60.028 45.455 5.60 0.00 45.99 3.10
2258 2757 2.094894 CGCAACACCTATTTGCTCTCTG 59.905 50.000 5.60 0.00 45.99 3.35
2259 2758 3.077359 GCAACACCTATTTGCTCTCTGT 58.923 45.455 0.00 0.00 44.96 3.41
2260 2759 3.126000 GCAACACCTATTTGCTCTCTGTC 59.874 47.826 0.00 0.00 44.96 3.51
2261 2760 3.618690 ACACCTATTTGCTCTCTGTCC 57.381 47.619 0.00 0.00 0.00 4.02
2262 2761 2.906389 ACACCTATTTGCTCTCTGTCCA 59.094 45.455 0.00 0.00 0.00 4.02
2263 2762 3.521126 ACACCTATTTGCTCTCTGTCCAT 59.479 43.478 0.00 0.00 0.00 3.41
2264 2763 4.716784 ACACCTATTTGCTCTCTGTCCATA 59.283 41.667 0.00 0.00 0.00 2.74
2265 2764 5.189736 ACACCTATTTGCTCTCTGTCCATAA 59.810 40.000 0.00 0.00 0.00 1.90
2266 2765 6.115446 CACCTATTTGCTCTCTGTCCATAAA 58.885 40.000 0.00 0.00 0.00 1.40
2267 2766 6.037610 CACCTATTTGCTCTCTGTCCATAAAC 59.962 42.308 0.00 0.00 0.00 2.01
2268 2767 5.235186 CCTATTTGCTCTCTGTCCATAAACG 59.765 44.000 0.00 0.00 0.00 3.60
2269 2768 3.953712 TTGCTCTCTGTCCATAAACGA 57.046 42.857 0.00 0.00 0.00 3.85
2270 2769 4.471904 TTGCTCTCTGTCCATAAACGAT 57.528 40.909 0.00 0.00 0.00 3.73
2271 2770 4.471904 TGCTCTCTGTCCATAAACGATT 57.528 40.909 0.00 0.00 0.00 3.34
2272 2771 4.433615 TGCTCTCTGTCCATAAACGATTC 58.566 43.478 0.00 0.00 0.00 2.52
2273 2772 4.081697 TGCTCTCTGTCCATAAACGATTCA 60.082 41.667 0.00 0.00 0.00 2.57
2274 2773 4.870426 GCTCTCTGTCCATAAACGATTCAA 59.130 41.667 0.00 0.00 0.00 2.69
2275 2774 5.220491 GCTCTCTGTCCATAAACGATTCAAC 60.220 44.000 0.00 0.00 0.00 3.18
2276 2775 5.175859 TCTCTGTCCATAAACGATTCAACC 58.824 41.667 0.00 0.00 0.00 3.77
2277 2776 4.900684 TCTGTCCATAAACGATTCAACCA 58.099 39.130 0.00 0.00 0.00 3.67
2278 2777 5.496556 TCTGTCCATAAACGATTCAACCAT 58.503 37.500 0.00 0.00 0.00 3.55
2279 2778 5.584649 TCTGTCCATAAACGATTCAACCATC 59.415 40.000 0.00 0.00 0.00 3.51
2280 2779 4.638421 TGTCCATAAACGATTCAACCATCC 59.362 41.667 0.00 0.00 0.00 3.51
2281 2780 3.874543 TCCATAAACGATTCAACCATCCG 59.125 43.478 0.00 0.00 0.00 4.18
2282 2781 3.874543 CCATAAACGATTCAACCATCCGA 59.125 43.478 0.00 0.00 0.00 4.55
2283 2782 4.024893 CCATAAACGATTCAACCATCCGAG 60.025 45.833 0.00 0.00 0.00 4.63
2284 2783 2.024176 AACGATTCAACCATCCGAGG 57.976 50.000 0.00 0.00 0.00 4.63
2285 2784 0.902531 ACGATTCAACCATCCGAGGT 59.097 50.000 0.00 0.00 45.91 3.85
2286 2785 2.104967 ACGATTCAACCATCCGAGGTA 58.895 47.619 0.00 0.00 42.25 3.08
2287 2786 2.698797 ACGATTCAACCATCCGAGGTAT 59.301 45.455 0.00 0.00 42.25 2.73
2288 2787 3.893200 ACGATTCAACCATCCGAGGTATA 59.107 43.478 0.00 0.00 42.25 1.47
2289 2788 4.527038 ACGATTCAACCATCCGAGGTATAT 59.473 41.667 0.00 0.00 42.25 0.86
2290 2789 5.713389 ACGATTCAACCATCCGAGGTATATA 59.287 40.000 0.00 0.00 42.25 0.86
2291 2790 6.380274 ACGATTCAACCATCCGAGGTATATAT 59.620 38.462 0.00 0.00 42.25 0.86
2292 2791 7.558807 ACGATTCAACCATCCGAGGTATATATA 59.441 37.037 0.00 0.00 42.25 0.86
2293 2792 8.577296 CGATTCAACCATCCGAGGTATATATAT 58.423 37.037 0.00 0.00 42.25 0.86
2318 2817 6.890663 ATATTTTTGATCATGTTGCGGTTG 57.109 33.333 0.00 0.00 0.00 3.77
2319 2818 2.063156 TTTGATCATGTTGCGGTTGC 57.937 45.000 0.00 0.00 43.20 4.17
2320 2819 1.246649 TTGATCATGTTGCGGTTGCT 58.753 45.000 0.00 0.00 43.34 3.91
2321 2820 2.106477 TGATCATGTTGCGGTTGCTA 57.894 45.000 0.00 0.00 43.34 3.49
2322 2821 2.009051 TGATCATGTTGCGGTTGCTAG 58.991 47.619 0.00 0.00 43.34 3.42
2323 2822 2.009774 GATCATGTTGCGGTTGCTAGT 58.990 47.619 0.00 0.00 43.34 2.57
2324 2823 1.438651 TCATGTTGCGGTTGCTAGTC 58.561 50.000 0.00 0.00 43.34 2.59
2325 2824 1.001974 TCATGTTGCGGTTGCTAGTCT 59.998 47.619 0.00 0.00 43.34 3.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
246 646 4.223477 TGGACCTACACATTAACCCTACAC 59.777 45.833 0.00 0.00 0.00 2.90
256 656 2.172717 GCCTACCATGGACCTACACATT 59.827 50.000 21.47 0.00 0.00 2.71
274 674 6.676322 TCAAGAAATGAAAAAGGTTCGGCCT 61.676 40.000 0.00 0.00 42.08 5.19
290 690 3.004734 CGGCTCACCTTGTTTCAAGAAAT 59.995 43.478 10.54 0.00 32.36 2.17
421 824 5.296531 GTGGTAGTAGTAGGCACTAGTCTTC 59.703 48.000 0.00 0.00 41.38 2.87
450 853 6.485313 ACGAGATTGTTTTTCTAATGTGGTGA 59.515 34.615 0.00 0.00 0.00 4.02
479 886 4.342951 CCGTAGTTGGTGAGGGTTGATATA 59.657 45.833 0.00 0.00 0.00 0.86
551 958 3.431725 GCCGCCCTTTCGAACTGG 61.432 66.667 0.00 2.12 0.00 4.00
583 990 2.125753 GTCTGCTGGACTCCGCTG 60.126 66.667 11.55 10.99 41.46 5.18
588 995 0.033504 TTTGGACGTCTGCTGGACTC 59.966 55.000 16.46 0.00 42.44 3.36
589 996 0.687354 ATTTGGACGTCTGCTGGACT 59.313 50.000 16.46 0.00 42.44 3.85
591 998 0.321564 CCATTTGGACGTCTGCTGGA 60.322 55.000 16.46 0.00 37.39 3.86
618 1026 4.190001 CTGCTGAAACATAGATCTGCTGT 58.810 43.478 5.18 6.22 40.09 4.40
628 1036 4.022155 TGGTGTACGTACTGCTGAAACATA 60.022 41.667 25.12 5.07 0.00 2.29
633 1041 2.929161 GCATGGTGTACGTACTGCTGAA 60.929 50.000 25.12 2.11 0.00 3.02
634 1042 1.403647 GCATGGTGTACGTACTGCTGA 60.404 52.381 25.12 2.87 0.00 4.26
683 1094 0.108186 GCATCAGACATCGGTCCACA 60.108 55.000 0.00 0.00 45.48 4.17
798 1209 8.442384 CGTTATCCAAAATTTTCAAAGGGAATG 58.558 33.333 10.09 5.33 34.91 2.67
827 1258 6.183360 CGAGGAAGCTGTTAGGATTACTTAGT 60.183 42.308 0.00 0.00 0.00 2.24
844 1275 4.847444 GGGAGCTGGCGAGGAAGC 62.847 72.222 0.00 0.00 39.82 3.86
845 1276 3.080121 AGGGAGCTGGCGAGGAAG 61.080 66.667 0.00 0.00 0.00 3.46
846 1277 3.077556 GAGGGAGCTGGCGAGGAA 61.078 66.667 0.00 0.00 0.00 3.36
849 1280 4.200283 GACGAGGGAGCTGGCGAG 62.200 72.222 0.00 0.00 0.00 5.03
851 1282 4.504916 CTGACGAGGGAGCTGGCG 62.505 72.222 0.00 0.00 0.00 5.69
852 1283 4.828925 GCTGACGAGGGAGCTGGC 62.829 72.222 0.00 0.00 32.12 4.85
854 1285 2.493973 GAGCTGACGAGGGAGCTG 59.506 66.667 0.00 0.00 45.72 4.24
890 1341 2.564771 TCTTCTATTGGAGCATTGCCG 58.435 47.619 4.70 0.00 0.00 5.69
902 1353 6.375736 TCTCGACTCTGTGATGTTCTTCTATT 59.624 38.462 0.00 0.00 0.00 1.73
919 1370 0.525761 AAGTGCTCTGCTCTCGACTC 59.474 55.000 0.00 0.00 30.88 3.36
934 1385 0.921347 GCGATGCTACGTACCAAGTG 59.079 55.000 0.00 0.00 35.59 3.16
935 1386 0.179119 GGCGATGCTACGTACCAAGT 60.179 55.000 0.00 0.00 35.59 3.16
937 1388 0.246910 TTGGCGATGCTACGTACCAA 59.753 50.000 8.54 8.54 34.77 3.67
938 1389 0.179121 CTTGGCGATGCTACGTACCA 60.179 55.000 0.00 0.00 35.59 3.25
939 1390 0.179119 ACTTGGCGATGCTACGTACC 60.179 55.000 0.00 0.00 35.59 3.34
940 1391 1.197910 GACTTGGCGATGCTACGTAC 58.802 55.000 0.00 0.00 35.59 3.67
941 1392 1.100510 AGACTTGGCGATGCTACGTA 58.899 50.000 0.00 0.00 35.59 3.57
942 1393 0.458543 CAGACTTGGCGATGCTACGT 60.459 55.000 0.00 0.00 35.59 3.57
959 1410 1.028868 GTAGGAAGCTGGCAAGGCAG 61.029 60.000 18.19 18.19 0.00 4.85
961 1412 0.322906 AAGTAGGAAGCTGGCAAGGC 60.323 55.000 0.00 0.00 0.00 4.35
971 1422 1.078759 CGCGGTGCTGAAGTAGGAAG 61.079 60.000 0.00 0.00 0.00 3.46
1194 1673 2.695127 AGTCTCGACGATCTAGTGGT 57.305 50.000 0.00 0.00 36.20 4.16
1375 1857 2.964740 TCAACTATGAGCAGCACTGAC 58.035 47.619 0.81 0.00 0.00 3.51
1448 1930 8.730680 CCAGATGCAAAATTAACTAGTACAACT 58.269 33.333 0.00 0.00 0.00 3.16
1504 1990 9.774742 CTAAGACTCTGCCAATAACAAATTAAC 57.225 33.333 0.00 0.00 0.00 2.01
1505 1991 9.515226 ACTAAGACTCTGCCAATAACAAATTAA 57.485 29.630 0.00 0.00 0.00 1.40
1506 1992 9.162764 GACTAAGACTCTGCCAATAACAAATTA 57.837 33.333 0.00 0.00 0.00 1.40
1507 1993 7.885399 AGACTAAGACTCTGCCAATAACAAATT 59.115 33.333 0.00 0.00 0.00 1.82
1508 1994 7.398024 AGACTAAGACTCTGCCAATAACAAAT 58.602 34.615 0.00 0.00 0.00 2.32
1509 1995 6.769512 AGACTAAGACTCTGCCAATAACAAA 58.230 36.000 0.00 0.00 0.00 2.83
1510 1996 6.211584 AGAGACTAAGACTCTGCCAATAACAA 59.788 38.462 3.05 0.00 42.20 2.83
1511 1997 5.717178 AGAGACTAAGACTCTGCCAATAACA 59.283 40.000 3.05 0.00 42.20 2.41
1592 2078 4.571580 ACAGACAAACAAAATCGTCGGTAA 59.428 37.500 0.00 0.00 35.49 2.85
1607 2093 9.391006 ACACTTTAATCAACTAGAACAGACAAA 57.609 29.630 0.00 0.00 0.00 2.83
1618 2104 8.962679 ACCTCACAAAAACACTTTAATCAACTA 58.037 29.630 0.00 0.00 0.00 2.24
1651 2150 8.623903 GGAACATGCAGATCATCAAAAGTAATA 58.376 33.333 0.00 0.00 31.79 0.98
1676 2175 5.706369 TCATTGAGGAAATGGCAATTTTTGG 59.294 36.000 0.00 0.00 45.00 3.28
1696 2195 6.289834 TGTCCATTCTTTGCAACAAATCATT 58.710 32.000 0.00 0.00 0.00 2.57
1697 2196 5.856156 TGTCCATTCTTTGCAACAAATCAT 58.144 33.333 0.00 0.00 0.00 2.45
1735 2234 7.611213 ACACCTTCTCGGAACAAAATATTAG 57.389 36.000 0.00 0.00 36.31 1.73
1747 2246 1.611977 CACACACTACACCTTCTCGGA 59.388 52.381 0.00 0.00 36.31 4.55
1757 2256 1.752198 GTGCCTCCCACACACTACA 59.248 57.895 0.00 0.00 44.06 2.74
1786 2285 2.159142 ACGGATCGACCCACTTTGTATC 60.159 50.000 0.00 0.00 34.64 2.24
1787 2286 1.829222 ACGGATCGACCCACTTTGTAT 59.171 47.619 0.00 0.00 34.64 2.29
1789 2288 0.037605 GACGGATCGACCCACTTTGT 60.038 55.000 0.00 0.00 34.64 2.83
1799 2298 1.134068 AGGACATGAGAGACGGATCGA 60.134 52.381 0.00 0.00 0.00 3.59
1802 2301 4.735369 AGAATAGGACATGAGAGACGGAT 58.265 43.478 0.00 0.00 0.00 4.18
1900 2399 1.995066 GGGGCCCCTCAATTTTGGG 60.995 63.158 35.49 5.70 42.98 4.12
1901 2400 2.358372 CGGGGCCCCTCAATTTTGG 61.358 63.158 38.17 15.91 0.00 3.28
1902 2401 3.017771 GCGGGGCCCCTCAATTTTG 62.018 63.158 38.17 20.97 0.00 2.44
1903 2402 2.683572 GCGGGGCCCCTCAATTTT 60.684 61.111 38.17 0.00 0.00 1.82
1904 2403 4.777854 GGCGGGGCCCCTCAATTT 62.778 66.667 38.17 0.00 44.06 1.82
1919 2418 4.230002 TACGCGCATACCTGGGGC 62.230 66.667 5.73 0.00 40.43 5.80
1920 2419 2.029073 CTACGCGCATACCTGGGG 59.971 66.667 5.73 0.00 35.92 4.96
1921 2420 2.029073 CCTACGCGCATACCTGGG 59.971 66.667 5.73 0.00 38.31 4.45
1922 2421 2.661866 GCCTACGCGCATACCTGG 60.662 66.667 5.73 0.00 0.00 4.45
1923 2422 1.951130 CAGCCTACGCGCATACCTG 60.951 63.158 5.73 2.74 41.18 4.00
1924 2423 2.417516 CAGCCTACGCGCATACCT 59.582 61.111 5.73 0.00 41.18 3.08
1925 2424 2.106332 ACAGCCTACGCGCATACC 59.894 61.111 5.73 0.00 41.18 2.73
1926 2425 2.237751 CCACAGCCTACGCGCATAC 61.238 63.158 5.73 0.00 41.18 2.39
1927 2426 2.106131 CCACAGCCTACGCGCATA 59.894 61.111 5.73 0.00 41.18 3.14
1931 2430 3.932580 TTCTGCCACAGCCTACGCG 62.933 63.158 3.53 3.53 41.18 6.01
1932 2431 1.026718 ATTTCTGCCACAGCCTACGC 61.027 55.000 0.00 0.00 38.69 4.42
1933 2432 1.453155 AATTTCTGCCACAGCCTACG 58.547 50.000 0.00 0.00 38.69 3.51
1934 2433 3.942130 AAAATTTCTGCCACAGCCTAC 57.058 42.857 0.00 0.00 38.69 3.18
1935 2434 4.151883 AGAAAAATTTCTGCCACAGCCTA 58.848 39.130 7.58 0.00 45.27 3.93
1936 2435 2.967887 AGAAAAATTTCTGCCACAGCCT 59.032 40.909 7.58 0.00 45.27 4.58
1937 2436 3.391506 AGAAAAATTTCTGCCACAGCC 57.608 42.857 7.58 0.00 45.27 4.85
1938 2437 7.538575 TCTATTAGAAAAATTTCTGCCACAGC 58.461 34.615 16.64 0.00 46.34 4.40
1939 2438 9.512435 CATCTATTAGAAAAATTTCTGCCACAG 57.488 33.333 16.64 8.00 46.34 3.66
1940 2439 8.469200 CCATCTATTAGAAAAATTTCTGCCACA 58.531 33.333 16.64 1.26 46.34 4.17
1941 2440 8.686334 TCCATCTATTAGAAAAATTTCTGCCAC 58.314 33.333 16.64 0.00 46.34 5.01
1942 2441 8.686334 GTCCATCTATTAGAAAAATTTCTGCCA 58.314 33.333 16.64 3.46 46.34 4.92
1943 2442 8.907885 AGTCCATCTATTAGAAAAATTTCTGCC 58.092 33.333 16.64 0.00 46.34 4.85
1944 2443 9.727627 CAGTCCATCTATTAGAAAAATTTCTGC 57.272 33.333 16.64 0.00 46.34 4.26
1945 2444 9.727627 GCAGTCCATCTATTAGAAAAATTTCTG 57.272 33.333 16.64 2.45 46.34 3.02
1947 2446 9.727627 CAGCAGTCCATCTATTAGAAAAATTTC 57.272 33.333 0.00 0.00 37.45 2.17
1948 2447 8.689972 CCAGCAGTCCATCTATTAGAAAAATTT 58.310 33.333 0.00 0.00 0.00 1.82
1949 2448 7.286316 CCCAGCAGTCCATCTATTAGAAAAATT 59.714 37.037 0.00 0.00 0.00 1.82
1950 2449 6.774656 CCCAGCAGTCCATCTATTAGAAAAAT 59.225 38.462 0.00 0.00 0.00 1.82
1951 2450 6.122277 CCCAGCAGTCCATCTATTAGAAAAA 58.878 40.000 0.00 0.00 0.00 1.94
1952 2451 5.684704 CCCAGCAGTCCATCTATTAGAAAA 58.315 41.667 0.00 0.00 0.00 2.29
1953 2452 4.444876 GCCCAGCAGTCCATCTATTAGAAA 60.445 45.833 0.00 0.00 0.00 2.52
1954 2453 3.071602 GCCCAGCAGTCCATCTATTAGAA 59.928 47.826 0.00 0.00 0.00 2.10
1955 2454 2.634940 GCCCAGCAGTCCATCTATTAGA 59.365 50.000 0.00 0.00 0.00 2.10
1956 2455 2.369860 TGCCCAGCAGTCCATCTATTAG 59.630 50.000 0.00 0.00 33.32 1.73
1957 2456 2.407562 TGCCCAGCAGTCCATCTATTA 58.592 47.619 0.00 0.00 33.32 0.98
1958 2457 1.216064 TGCCCAGCAGTCCATCTATT 58.784 50.000 0.00 0.00 33.32 1.73
1959 2458 2.935348 TGCCCAGCAGTCCATCTAT 58.065 52.632 0.00 0.00 33.32 1.98
1960 2459 4.478531 TGCCCAGCAGTCCATCTA 57.521 55.556 0.00 0.00 33.32 1.98
1976 2475 4.834453 CTGCCTCCTGCCTCGCTG 62.834 72.222 0.00 0.00 40.16 5.18
1980 2479 3.805891 GATCGCTGCCTCCTGCCTC 62.806 68.421 0.00 0.00 40.16 4.70
1981 2480 3.859414 GATCGCTGCCTCCTGCCT 61.859 66.667 0.00 0.00 40.16 4.75
1982 2481 2.955022 ATTGATCGCTGCCTCCTGCC 62.955 60.000 0.00 0.00 40.16 4.85
1983 2482 1.099879 AATTGATCGCTGCCTCCTGC 61.100 55.000 0.00 0.00 41.77 4.85
1984 2483 0.942962 GAATTGATCGCTGCCTCCTG 59.057 55.000 0.00 0.00 0.00 3.86
1985 2484 0.835941 AGAATTGATCGCTGCCTCCT 59.164 50.000 0.00 0.00 0.00 3.69
1986 2485 1.673168 AAGAATTGATCGCTGCCTCC 58.327 50.000 0.00 0.00 0.00 4.30
1987 2486 2.032675 GGAAAGAATTGATCGCTGCCTC 59.967 50.000 0.00 0.00 0.00 4.70
1988 2487 2.019984 GGAAAGAATTGATCGCTGCCT 58.980 47.619 0.00 0.00 0.00 4.75
1989 2488 2.019984 AGGAAAGAATTGATCGCTGCC 58.980 47.619 0.00 0.00 0.00 4.85
1990 2489 3.873952 ACTAGGAAAGAATTGATCGCTGC 59.126 43.478 0.00 0.00 0.00 5.25
1991 2490 5.582269 TGAACTAGGAAAGAATTGATCGCTG 59.418 40.000 0.00 0.00 0.00 5.18
1992 2491 5.734720 TGAACTAGGAAAGAATTGATCGCT 58.265 37.500 0.00 0.00 0.00 4.93
1993 2492 5.582665 ACTGAACTAGGAAAGAATTGATCGC 59.417 40.000 0.00 0.00 0.00 4.58
1994 2493 6.456181 GCACTGAACTAGGAAAGAATTGATCG 60.456 42.308 0.00 0.00 0.00 3.69
1995 2494 6.456181 CGCACTGAACTAGGAAAGAATTGATC 60.456 42.308 0.00 0.00 0.00 2.92
1996 2495 5.352569 CGCACTGAACTAGGAAAGAATTGAT 59.647 40.000 0.00 0.00 0.00 2.57
1997 2496 4.690748 CGCACTGAACTAGGAAAGAATTGA 59.309 41.667 0.00 0.00 0.00 2.57
1998 2497 4.452455 ACGCACTGAACTAGGAAAGAATTG 59.548 41.667 0.00 0.00 0.00 2.32
1999 2498 4.452455 CACGCACTGAACTAGGAAAGAATT 59.548 41.667 0.00 0.00 0.00 2.17
2000 2499 3.997021 CACGCACTGAACTAGGAAAGAAT 59.003 43.478 0.00 0.00 0.00 2.40
2001 2500 3.069016 TCACGCACTGAACTAGGAAAGAA 59.931 43.478 0.00 0.00 0.00 2.52
2002 2501 2.626266 TCACGCACTGAACTAGGAAAGA 59.374 45.455 0.00 0.00 0.00 2.52
2003 2502 3.026630 TCACGCACTGAACTAGGAAAG 57.973 47.619 0.00 0.00 0.00 2.62
2004 2503 3.462483 TTCACGCACTGAACTAGGAAA 57.538 42.857 0.00 0.00 33.65 3.13
2005 2504 3.462483 TTTCACGCACTGAACTAGGAA 57.538 42.857 0.00 0.00 38.70 3.36
2006 2505 3.462483 TTTTCACGCACTGAACTAGGA 57.538 42.857 0.00 0.00 38.70 2.94
2024 2523 7.646884 AGGGAGATCAATCAGTTCCTATTTTT 58.353 34.615 0.00 0.00 0.00 1.94
2025 2524 7.218314 AGGGAGATCAATCAGTTCCTATTTT 57.782 36.000 0.00 0.00 0.00 1.82
2026 2525 6.838401 AGGGAGATCAATCAGTTCCTATTT 57.162 37.500 0.00 0.00 0.00 1.40
2027 2526 6.388100 TCAAGGGAGATCAATCAGTTCCTATT 59.612 38.462 0.00 0.00 0.00 1.73
2028 2527 5.907662 TCAAGGGAGATCAATCAGTTCCTAT 59.092 40.000 0.00 0.00 0.00 2.57
2029 2528 5.280499 TCAAGGGAGATCAATCAGTTCCTA 58.720 41.667 0.00 0.00 0.00 2.94
2030 2529 4.107072 TCAAGGGAGATCAATCAGTTCCT 58.893 43.478 0.00 0.00 0.00 3.36
2031 2530 4.494091 TCAAGGGAGATCAATCAGTTCC 57.506 45.455 0.00 0.00 0.00 3.62
2032 2531 5.530543 GGAATCAAGGGAGATCAATCAGTTC 59.469 44.000 0.00 0.00 0.00 3.01
2033 2532 5.444176 GGAATCAAGGGAGATCAATCAGTT 58.556 41.667 0.00 0.00 0.00 3.16
2034 2533 4.141298 GGGAATCAAGGGAGATCAATCAGT 60.141 45.833 0.00 0.00 0.00 3.41
2035 2534 4.104420 AGGGAATCAAGGGAGATCAATCAG 59.896 45.833 0.00 0.00 0.00 2.90
2036 2535 4.050037 AGGGAATCAAGGGAGATCAATCA 58.950 43.478 0.00 0.00 0.00 2.57
2037 2536 4.720775 AGGGAATCAAGGGAGATCAATC 57.279 45.455 0.00 0.00 0.00 2.67
2038 2537 5.195349 AGAAAGGGAATCAAGGGAGATCAAT 59.805 40.000 0.00 0.00 0.00 2.57
2039 2538 4.541714 AGAAAGGGAATCAAGGGAGATCAA 59.458 41.667 0.00 0.00 0.00 2.57
2040 2539 4.114597 AGAAAGGGAATCAAGGGAGATCA 58.885 43.478 0.00 0.00 0.00 2.92
2041 2540 4.787135 AGAAAGGGAATCAAGGGAGATC 57.213 45.455 0.00 0.00 0.00 2.75
2042 2541 6.183361 GGAATAGAAAGGGAATCAAGGGAGAT 60.183 42.308 0.00 0.00 0.00 2.75
2043 2542 5.132816 GGAATAGAAAGGGAATCAAGGGAGA 59.867 44.000 0.00 0.00 0.00 3.71
2044 2543 5.103940 TGGAATAGAAAGGGAATCAAGGGAG 60.104 44.000 0.00 0.00 0.00 4.30
2045 2544 4.793520 TGGAATAGAAAGGGAATCAAGGGA 59.206 41.667 0.00 0.00 0.00 4.20
2046 2545 5.129368 TGGAATAGAAAGGGAATCAAGGG 57.871 43.478 0.00 0.00 0.00 3.95
2047 2546 6.367983 TGATGGAATAGAAAGGGAATCAAGG 58.632 40.000 0.00 0.00 0.00 3.61
2048 2547 7.523380 GCATGATGGAATAGAAAGGGAATCAAG 60.523 40.741 0.00 0.00 0.00 3.02
2049 2548 6.266103 GCATGATGGAATAGAAAGGGAATCAA 59.734 38.462 0.00 0.00 0.00 2.57
2050 2549 5.771666 GCATGATGGAATAGAAAGGGAATCA 59.228 40.000 0.00 0.00 0.00 2.57
2051 2550 5.771666 TGCATGATGGAATAGAAAGGGAATC 59.228 40.000 0.00 0.00 0.00 2.52
2052 2551 5.537674 GTGCATGATGGAATAGAAAGGGAAT 59.462 40.000 0.00 0.00 0.00 3.01
2053 2552 4.889409 GTGCATGATGGAATAGAAAGGGAA 59.111 41.667 0.00 0.00 0.00 3.97
2054 2553 4.464008 GTGCATGATGGAATAGAAAGGGA 58.536 43.478 0.00 0.00 0.00 4.20
2055 2554 3.251729 CGTGCATGATGGAATAGAAAGGG 59.748 47.826 0.00 0.00 0.00 3.95
2056 2555 3.304257 GCGTGCATGATGGAATAGAAAGG 60.304 47.826 10.93 0.00 0.00 3.11
2057 2556 3.313249 TGCGTGCATGATGGAATAGAAAG 59.687 43.478 10.93 0.00 0.00 2.62
2058 2557 3.277715 TGCGTGCATGATGGAATAGAAA 58.722 40.909 10.93 0.00 0.00 2.52
2059 2558 2.916640 TGCGTGCATGATGGAATAGAA 58.083 42.857 10.93 0.00 0.00 2.10
2060 2559 2.618442 TGCGTGCATGATGGAATAGA 57.382 45.000 10.93 0.00 0.00 1.98
2061 2560 3.251487 TGAATGCGTGCATGATGGAATAG 59.749 43.478 10.93 0.00 36.68 1.73
2062 2561 3.003585 GTGAATGCGTGCATGATGGAATA 59.996 43.478 10.93 0.00 36.68 1.75
2063 2562 2.025898 TGAATGCGTGCATGATGGAAT 58.974 42.857 10.93 0.00 36.68 3.01
2064 2563 1.132834 GTGAATGCGTGCATGATGGAA 59.867 47.619 10.93 0.00 36.68 3.53
2065 2564 0.734309 GTGAATGCGTGCATGATGGA 59.266 50.000 10.93 0.00 36.68 3.41
2066 2565 0.590481 CGTGAATGCGTGCATGATGG 60.590 55.000 10.93 0.00 36.68 3.51
2067 2566 1.197988 GCGTGAATGCGTGCATGATG 61.198 55.000 10.93 5.20 36.68 3.07
2068 2567 1.063006 GCGTGAATGCGTGCATGAT 59.937 52.632 10.93 0.00 36.68 2.45
2069 2568 2.480102 GCGTGAATGCGTGCATGA 59.520 55.556 10.93 0.00 36.68 3.07
2070 2569 2.577644 GGCGTGAATGCGTGCATG 60.578 61.111 8.30 0.09 36.68 4.06
2071 2570 4.164664 CGGCGTGAATGCGTGCAT 62.165 61.111 0.51 0.51 38.46 3.96
2073 2572 3.420222 CTACGGCGTGAATGCGTGC 62.420 63.158 24.86 0.00 35.06 5.34
2074 2573 1.623081 AACTACGGCGTGAATGCGTG 61.623 55.000 24.86 4.87 35.06 5.34
2075 2574 1.349259 GAACTACGGCGTGAATGCGT 61.349 55.000 24.86 6.93 35.06 5.24
2076 2575 1.343821 GAACTACGGCGTGAATGCG 59.656 57.895 24.86 6.28 35.06 4.73
2077 2576 1.702491 GGGAACTACGGCGTGAATGC 61.702 60.000 24.86 12.91 0.00 3.56
2078 2577 0.390603 TGGGAACTACGGCGTGAATG 60.391 55.000 24.86 12.29 0.00 2.67
2079 2578 0.322322 TTGGGAACTACGGCGTGAAT 59.678 50.000 24.86 7.98 0.00 2.57
2080 2579 0.106335 TTTGGGAACTACGGCGTGAA 59.894 50.000 24.86 1.71 0.00 3.18
2081 2580 0.322322 ATTTGGGAACTACGGCGTGA 59.678 50.000 24.86 5.90 0.00 4.35
2082 2581 1.662122 GTATTTGGGAACTACGGCGTG 59.338 52.381 24.86 15.01 0.00 5.34
2083 2582 1.405933 GGTATTTGGGAACTACGGCGT 60.406 52.381 19.64 19.64 0.00 5.68
2084 2583 1.292992 GGTATTTGGGAACTACGGCG 58.707 55.000 4.80 4.80 0.00 6.46
2085 2584 2.406596 TGGTATTTGGGAACTACGGC 57.593 50.000 0.00 0.00 0.00 5.68
2086 2585 5.163591 GGAAATTGGTATTTGGGAACTACGG 60.164 44.000 0.00 0.00 34.16 4.02
2087 2586 5.163591 GGGAAATTGGTATTTGGGAACTACG 60.164 44.000 0.00 0.00 34.16 3.51
2088 2587 5.717654 TGGGAAATTGGTATTTGGGAACTAC 59.282 40.000 0.00 0.00 34.16 2.73
2089 2588 5.905088 TGGGAAATTGGTATTTGGGAACTA 58.095 37.500 0.00 0.00 34.16 2.24
2090 2589 4.757692 TGGGAAATTGGTATTTGGGAACT 58.242 39.130 0.00 0.00 34.16 3.01
2091 2590 5.425217 AGATGGGAAATTGGTATTTGGGAAC 59.575 40.000 0.00 0.00 34.16 3.62
2092 2591 5.424895 CAGATGGGAAATTGGTATTTGGGAA 59.575 40.000 0.00 0.00 34.16 3.97
2093 2592 4.961730 CAGATGGGAAATTGGTATTTGGGA 59.038 41.667 0.00 0.00 34.16 4.37
2094 2593 4.716287 ACAGATGGGAAATTGGTATTTGGG 59.284 41.667 0.00 0.00 34.16 4.12
2095 2594 5.395546 CCACAGATGGGAAATTGGTATTTGG 60.396 44.000 0.00 0.00 43.04 3.28
2096 2595 5.663456 CCACAGATGGGAAATTGGTATTTG 58.337 41.667 0.00 0.00 43.04 2.32
2097 2596 5.937975 CCACAGATGGGAAATTGGTATTT 57.062 39.130 0.00 0.00 43.04 1.40
2126 2625 0.385723 GTCACGAAGAGACGAAGCGT 60.386 55.000 0.00 0.00 45.10 5.07
2127 2626 2.340999 GTCACGAAGAGACGAAGCG 58.659 57.895 0.00 0.00 38.49 4.68
2134 2633 2.126850 CGCGCAGTCACGAAGAGA 60.127 61.111 8.75 0.00 34.06 3.10
2135 2634 3.832171 GCGCGCAGTCACGAAGAG 61.832 66.667 29.10 0.00 34.06 2.85
2136 2635 4.342987 AGCGCGCAGTCACGAAGA 62.343 61.111 35.10 0.00 34.06 2.87
2137 2636 3.832171 GAGCGCGCAGTCACGAAG 61.832 66.667 35.10 0.00 34.06 3.79
2138 2637 4.639171 TGAGCGCGCAGTCACGAA 62.639 61.111 35.10 3.77 34.06 3.85
2152 2651 0.036875 AAGGGAAAAGGAGCGGTGAG 59.963 55.000 0.00 0.00 0.00 3.51
2153 2652 0.476771 AAAGGGAAAAGGAGCGGTGA 59.523 50.000 0.00 0.00 0.00 4.02
2154 2653 1.328279 AAAAGGGAAAAGGAGCGGTG 58.672 50.000 0.00 0.00 0.00 4.94
2155 2654 2.963599 TAAAAGGGAAAAGGAGCGGT 57.036 45.000 0.00 0.00 0.00 5.68
2156 2655 2.688446 GGATAAAAGGGAAAAGGAGCGG 59.312 50.000 0.00 0.00 0.00 5.52
2157 2656 3.378427 CAGGATAAAAGGGAAAAGGAGCG 59.622 47.826 0.00 0.00 0.00 5.03
2158 2657 4.600062 TCAGGATAAAAGGGAAAAGGAGC 58.400 43.478 0.00 0.00 0.00 4.70
2159 2658 6.891908 TGATTCAGGATAAAAGGGAAAAGGAG 59.108 38.462 0.00 0.00 0.00 3.69
2160 2659 6.799827 TGATTCAGGATAAAAGGGAAAAGGA 58.200 36.000 0.00 0.00 0.00 3.36
2161 2660 7.480760 TTGATTCAGGATAAAAGGGAAAAGG 57.519 36.000 0.00 0.00 0.00 3.11
2166 2665 9.367160 GGAATATTTGATTCAGGATAAAAGGGA 57.633 33.333 0.00 0.00 0.00 4.20
2167 2666 9.372189 AGGAATATTTGATTCAGGATAAAAGGG 57.628 33.333 0.00 0.00 0.00 3.95
2170 2669 9.367160 GGGAGGAATATTTGATTCAGGATAAAA 57.633 33.333 0.00 0.00 0.00 1.52
2171 2670 8.736675 AGGGAGGAATATTTGATTCAGGATAAA 58.263 33.333 0.00 0.00 0.00 1.40
2172 2671 8.293027 AGGGAGGAATATTTGATTCAGGATAA 57.707 34.615 0.00 0.00 0.00 1.75
2173 2672 7.895144 AGGGAGGAATATTTGATTCAGGATA 57.105 36.000 0.00 0.00 0.00 2.59
2174 2673 6.793518 AGGGAGGAATATTTGATTCAGGAT 57.206 37.500 0.00 0.00 0.00 3.24
2175 2674 7.705912 TTAGGGAGGAATATTTGATTCAGGA 57.294 36.000 0.00 0.00 0.00 3.86
2176 2675 8.946797 AATTAGGGAGGAATATTTGATTCAGG 57.053 34.615 0.00 0.00 0.00 3.86
2177 2676 9.578576 TGAATTAGGGAGGAATATTTGATTCAG 57.421 33.333 0.00 0.00 0.00 3.02
2178 2677 9.934784 TTGAATTAGGGAGGAATATTTGATTCA 57.065 29.630 0.00 0.00 0.00 2.57
2187 2686 9.847224 GTGAACTATTTGAATTAGGGAGGAATA 57.153 33.333 0.00 0.00 0.00 1.75
2188 2687 7.780271 GGTGAACTATTTGAATTAGGGAGGAAT 59.220 37.037 0.00 0.00 0.00 3.01
2189 2688 7.116736 GGTGAACTATTTGAATTAGGGAGGAA 58.883 38.462 0.00 0.00 0.00 3.36
2190 2689 6.631766 CGGTGAACTATTTGAATTAGGGAGGA 60.632 42.308 0.00 0.00 0.00 3.71
2191 2690 5.527582 CGGTGAACTATTTGAATTAGGGAGG 59.472 44.000 0.00 0.00 0.00 4.30
2192 2691 6.346096 TCGGTGAACTATTTGAATTAGGGAG 58.654 40.000 0.00 0.00 0.00 4.30
2193 2692 6.302535 TCGGTGAACTATTTGAATTAGGGA 57.697 37.500 0.00 0.00 0.00 4.20
2194 2693 7.568199 AATCGGTGAACTATTTGAATTAGGG 57.432 36.000 0.00 0.00 0.00 3.53
2195 2694 8.673711 TGAAATCGGTGAACTATTTGAATTAGG 58.326 33.333 0.00 0.00 0.00 2.69
2198 2697 9.927668 AATTGAAATCGGTGAACTATTTGAATT 57.072 25.926 0.42 0.42 34.06 2.17
2199 2698 9.573133 GAATTGAAATCGGTGAACTATTTGAAT 57.427 29.630 0.00 0.00 30.86 2.57
2200 2699 8.792633 AGAATTGAAATCGGTGAACTATTTGAA 58.207 29.630 0.00 0.00 0.00 2.69
2201 2700 8.335532 AGAATTGAAATCGGTGAACTATTTGA 57.664 30.769 0.00 0.00 0.00 2.69
2202 2701 7.698130 GGAGAATTGAAATCGGTGAACTATTTG 59.302 37.037 0.00 0.00 0.00 2.32
2203 2702 7.414098 CGGAGAATTGAAATCGGTGAACTATTT 60.414 37.037 0.00 0.00 0.00 1.40
2204 2703 6.037172 CGGAGAATTGAAATCGGTGAACTATT 59.963 38.462 0.00 0.00 0.00 1.73
2205 2704 5.523916 CGGAGAATTGAAATCGGTGAACTAT 59.476 40.000 0.00 0.00 0.00 2.12
2206 2705 4.868171 CGGAGAATTGAAATCGGTGAACTA 59.132 41.667 0.00 0.00 0.00 2.24
2207 2706 3.684788 CGGAGAATTGAAATCGGTGAACT 59.315 43.478 0.00 0.00 0.00 3.01
2208 2707 3.181510 CCGGAGAATTGAAATCGGTGAAC 60.182 47.826 0.00 0.00 33.63 3.18
2209 2708 3.006940 CCGGAGAATTGAAATCGGTGAA 58.993 45.455 0.00 0.00 33.63 3.18
2210 2709 2.627945 CCGGAGAATTGAAATCGGTGA 58.372 47.619 0.00 0.00 33.63 4.02
2211 2710 1.064060 GCCGGAGAATTGAAATCGGTG 59.936 52.381 5.05 0.00 39.64 4.94
2212 2711 1.379527 GCCGGAGAATTGAAATCGGT 58.620 50.000 5.05 0.00 39.64 4.69
2213 2712 0.304705 CGCCGGAGAATTGAAATCGG 59.695 55.000 5.05 0.00 40.33 4.18
2214 2713 0.316196 GCGCCGGAGAATTGAAATCG 60.316 55.000 10.31 0.00 0.00 3.34
2215 2714 1.017387 AGCGCCGGAGAATTGAAATC 58.983 50.000 10.31 0.00 0.00 2.17
2216 2715 0.734889 CAGCGCCGGAGAATTGAAAT 59.265 50.000 10.31 0.00 0.00 2.17
2217 2716 0.605319 ACAGCGCCGGAGAATTGAAA 60.605 50.000 10.31 0.00 0.00 2.69
2218 2717 1.003839 ACAGCGCCGGAGAATTGAA 60.004 52.632 10.31 0.00 0.00 2.69
2219 2718 1.447838 GACAGCGCCGGAGAATTGA 60.448 57.895 10.31 0.00 0.00 2.57
2220 2719 2.802667 CGACAGCGCCGGAGAATTG 61.803 63.158 10.31 6.30 0.00 2.32
2221 2720 2.509336 CGACAGCGCCGGAGAATT 60.509 61.111 10.31 0.00 0.00 2.17
2233 2732 2.247311 GCAAATAGGTGTTGCGACAG 57.753 50.000 7.14 0.00 41.74 3.51
2239 2738 3.686726 GGACAGAGAGCAAATAGGTGTTG 59.313 47.826 0.00 0.00 0.00 3.33
2240 2739 3.327757 TGGACAGAGAGCAAATAGGTGTT 59.672 43.478 0.00 0.00 0.00 3.32
2241 2740 2.906389 TGGACAGAGAGCAAATAGGTGT 59.094 45.455 0.00 0.00 0.00 4.16
2242 2741 3.616956 TGGACAGAGAGCAAATAGGTG 57.383 47.619 0.00 0.00 0.00 4.00
2243 2742 5.957771 TTATGGACAGAGAGCAAATAGGT 57.042 39.130 0.00 0.00 0.00 3.08
2244 2743 5.235186 CGTTTATGGACAGAGAGCAAATAGG 59.765 44.000 0.00 0.00 0.00 2.57
2245 2744 6.042777 TCGTTTATGGACAGAGAGCAAATAG 58.957 40.000 0.00 0.00 0.00 1.73
2246 2745 5.972935 TCGTTTATGGACAGAGAGCAAATA 58.027 37.500 0.00 0.00 0.00 1.40
2247 2746 4.832248 TCGTTTATGGACAGAGAGCAAAT 58.168 39.130 0.00 0.00 0.00 2.32
2248 2747 4.265904 TCGTTTATGGACAGAGAGCAAA 57.734 40.909 0.00 0.00 0.00 3.68
2249 2748 3.953712 TCGTTTATGGACAGAGAGCAA 57.046 42.857 0.00 0.00 0.00 3.91
2250 2749 4.081697 TGAATCGTTTATGGACAGAGAGCA 60.082 41.667 0.00 0.00 0.00 4.26
2251 2750 4.433615 TGAATCGTTTATGGACAGAGAGC 58.566 43.478 0.00 0.00 0.00 4.09
2252 2751 5.292101 GGTTGAATCGTTTATGGACAGAGAG 59.708 44.000 0.00 0.00 0.00 3.20
2253 2752 5.175859 GGTTGAATCGTTTATGGACAGAGA 58.824 41.667 0.00 0.00 0.00 3.10
2254 2753 4.935205 TGGTTGAATCGTTTATGGACAGAG 59.065 41.667 0.00 0.00 0.00 3.35
2255 2754 4.900684 TGGTTGAATCGTTTATGGACAGA 58.099 39.130 0.00 0.00 0.00 3.41
2256 2755 5.220854 GGATGGTTGAATCGTTTATGGACAG 60.221 44.000 0.00 0.00 0.00 3.51
2257 2756 4.638421 GGATGGTTGAATCGTTTATGGACA 59.362 41.667 0.00 0.00 0.00 4.02
2258 2757 4.260620 CGGATGGTTGAATCGTTTATGGAC 60.261 45.833 0.00 0.00 0.00 4.02
2259 2758 3.874543 CGGATGGTTGAATCGTTTATGGA 59.125 43.478 0.00 0.00 0.00 3.41
2260 2759 3.874543 TCGGATGGTTGAATCGTTTATGG 59.125 43.478 0.00 0.00 0.00 2.74
2261 2760 4.024893 CCTCGGATGGTTGAATCGTTTATG 60.025 45.833 0.00 0.00 0.00 1.90
2262 2761 4.127171 CCTCGGATGGTTGAATCGTTTAT 58.873 43.478 0.00 0.00 0.00 1.40
2263 2762 3.055675 ACCTCGGATGGTTGAATCGTTTA 60.056 43.478 0.00 0.00 36.89 2.01
2264 2763 2.290071 ACCTCGGATGGTTGAATCGTTT 60.290 45.455 0.00 0.00 36.89 3.60
2265 2764 1.278127 ACCTCGGATGGTTGAATCGTT 59.722 47.619 0.00 0.00 36.89 3.85
2266 2765 0.902531 ACCTCGGATGGTTGAATCGT 59.097 50.000 0.00 0.00 36.89 3.73
2267 2766 2.882927 TACCTCGGATGGTTGAATCG 57.117 50.000 4.79 0.00 41.22 3.34
2292 2791 9.033481 CAACCGCAACATGATCAAAAATATAAT 57.967 29.630 0.00 0.00 0.00 1.28
2293 2792 7.009999 GCAACCGCAACATGATCAAAAATATAA 59.990 33.333 0.00 0.00 38.36 0.98
2294 2793 6.475076 GCAACCGCAACATGATCAAAAATATA 59.525 34.615 0.00 0.00 38.36 0.86
2295 2794 5.291614 GCAACCGCAACATGATCAAAAATAT 59.708 36.000 0.00 0.00 38.36 1.28
2296 2795 4.624882 GCAACCGCAACATGATCAAAAATA 59.375 37.500 0.00 0.00 38.36 1.40
2297 2796 3.432933 GCAACCGCAACATGATCAAAAAT 59.567 39.130 0.00 0.00 38.36 1.82
2298 2797 2.799412 GCAACCGCAACATGATCAAAAA 59.201 40.909 0.00 0.00 38.36 1.94
2299 2798 2.035704 AGCAACCGCAACATGATCAAAA 59.964 40.909 0.00 0.00 42.27 2.44
2300 2799 1.612950 AGCAACCGCAACATGATCAAA 59.387 42.857 0.00 0.00 42.27 2.69
2301 2800 1.246649 AGCAACCGCAACATGATCAA 58.753 45.000 0.00 0.00 42.27 2.57
2302 2801 2.009051 CTAGCAACCGCAACATGATCA 58.991 47.619 0.00 0.00 42.27 2.92
2303 2802 2.009774 ACTAGCAACCGCAACATGATC 58.990 47.619 0.00 0.00 42.27 2.92
2304 2803 2.009774 GACTAGCAACCGCAACATGAT 58.990 47.619 0.00 0.00 42.27 2.45
2305 2804 1.001974 AGACTAGCAACCGCAACATGA 59.998 47.619 0.00 0.00 42.27 3.07
2306 2805 1.442769 AGACTAGCAACCGCAACATG 58.557 50.000 0.00 0.00 42.27 3.21
2307 2806 3.935993 AGACTAGCAACCGCAACAT 57.064 47.368 0.00 0.00 42.27 2.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.