Multiple sequence alignment - TraesCS2B01G439600

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G439600 chr2B 100.000 3642 0 0 1 3642 631450271 631446630 0.000000e+00 6726.0
1 TraesCS2B01G439600 chr2B 80.074 2173 352 51 523 2649 709831700 709829563 0.000000e+00 1539.0
2 TraesCS2B01G439600 chr2B 92.742 248 13 1 1 243 588151577 588151330 1.610000e-93 353.0
3 TraesCS2B01G439600 chr2A 92.255 1898 121 13 1764 3642 676339906 676338016 0.000000e+00 2667.0
4 TraesCS2B01G439600 chr2A 94.626 1526 81 1 243 1768 676346157 676344633 0.000000e+00 2362.0
5 TraesCS2B01G439600 chr2A 80.308 1625 251 37 523 2124 722210266 722208688 0.000000e+00 1164.0
6 TraesCS2B01G439600 chr2A 94.505 91 5 0 395 485 258406426 258406516 1.360000e-29 141.0
7 TraesCS2B01G439600 chr2A 86.325 117 13 2 396 510 189813268 189813383 1.370000e-24 124.0
8 TraesCS2B01G439600 chr2D 94.845 1610 77 1 1345 2948 531685285 531683676 0.000000e+00 2508.0
9 TraesCS2B01G439600 chr2D 94.514 1112 55 4 243 1352 531686579 531685472 0.000000e+00 1711.0
10 TraesCS2B01G439600 chr2D 79.677 2170 341 55 523 2649 587300012 587297900 0.000000e+00 1472.0
11 TraesCS2B01G439600 chr2D 92.742 248 12 2 1 243 51299081 51298835 1.610000e-93 353.0
12 TraesCS2B01G439600 chr2D 90.909 264 20 4 3025 3285 531683645 531683383 5.790000e-93 351.0
13 TraesCS2B01G439600 chr2D 82.051 195 28 6 987 1177 586309259 586309450 3.760000e-35 159.0
14 TraesCS2B01G439600 chr2D 79.339 242 39 6 3408 3640 645288140 645287901 3.760000e-35 159.0
15 TraesCS2B01G439600 chr2D 84.615 156 22 2 3330 3485 544790947 544790794 1.750000e-33 154.0
16 TraesCS2B01G439600 chr6B 92.857 252 13 2 1 247 257016221 257015970 9.610000e-96 361.0
17 TraesCS2B01G439600 chr6B 92.742 248 12 2 1 242 358542822 358543069 1.610000e-93 353.0
18 TraesCS2B01G439600 chr6B 92.369 249 14 1 1 244 662793769 662794017 2.080000e-92 350.0
19 TraesCS2B01G439600 chr3B 93.145 248 12 1 1 243 547540514 547540761 3.460000e-95 359.0
20 TraesCS2B01G439600 chr3B 81.356 236 36 2 3408 3635 474995672 474995437 6.210000e-43 185.0
21 TraesCS2B01G439600 chr3B 81.905 105 15 3 2024 2125 766378790 766378893 6.480000e-13 86.1
22 TraesCS2B01G439600 chr4B 93.117 247 12 1 2 243 444039463 444039217 1.240000e-94 357.0
23 TraesCS2B01G439600 chr4B 94.737 95 5 0 392 486 423050987 423051081 8.150000e-32 148.0
24 TraesCS2B01G439600 chr7B 92.742 248 13 1 1 243 664069370 664069123 1.610000e-93 353.0
25 TraesCS2B01G439600 chr7B 77.744 328 50 9 3330 3637 427687090 427687414 2.890000e-41 180.0
26 TraesCS2B01G439600 chr7B 80.769 208 29 4 3332 3529 457783116 457782910 6.300000e-33 152.0
27 TraesCS2B01G439600 chr1B 92.400 250 14 1 1 245 409865614 409865863 5.790000e-93 351.0
28 TraesCS2B01G439600 chr1B 70.281 1208 290 58 928 2102 631716584 631717755 1.040000e-40 178.0
29 TraesCS2B01G439600 chr1B 85.621 153 19 3 3378 3529 151568361 151568511 1.350000e-34 158.0
30 TraesCS2B01G439600 chr4D 81.940 299 52 2 3344 3642 39296633 39296337 6.040000e-63 252.0
31 TraesCS2B01G439600 chr4D 91.753 97 8 0 401 497 478668930 478669026 6.340000e-28 135.0
32 TraesCS2B01G439600 chr4D 80.667 150 28 1 3310 3459 16723982 16723834 8.260000e-22 115.0
33 TraesCS2B01G439600 chr4D 81.429 140 24 2 3330 3469 483203613 483203476 2.970000e-21 113.0
34 TraesCS2B01G439600 chr4D 79.452 146 25 4 3332 3476 403300801 403300660 8.320000e-17 99.0
35 TraesCS2B01G439600 chr4D 89.474 76 7 1 3408 3483 391645562 391645636 1.080000e-15 95.3
36 TraesCS2B01G439600 chr4D 79.839 124 23 2 3332 3454 381104083 381104205 5.010000e-14 89.8
37 TraesCS2B01G439600 chr4D 83.333 96 16 0 3374 3469 473166399 473166494 5.010000e-14 89.8
38 TraesCS2B01G439600 chr5A 80.068 296 53 6 3348 3642 571775739 571776029 7.920000e-52 215.0
39 TraesCS2B01G439600 chr5A 79.530 298 42 8 3357 3636 175628448 175628152 1.030000e-45 195.0
40 TraesCS2B01G439600 chr3A 80.755 265 47 4 3343 3606 522243030 522243291 1.710000e-48 204.0
41 TraesCS2B01G439600 chr3A 81.569 255 36 4 3333 3577 75156397 75156144 2.220000e-47 200.0
42 TraesCS2B01G439600 chr3A 84.106 151 23 1 3333 3483 162215409 162215260 1.050000e-30 145.0
43 TraesCS2B01G439600 chr3A 81.905 105 15 3 2024 2125 711078521 711078418 6.480000e-13 86.1
44 TraesCS2B01G439600 chr1D 70.407 1203 296 51 929 2102 459521550 459522721 1.030000e-45 195.0
45 TraesCS2B01G439600 chr1D 94.505 91 5 0 397 487 307830099 307830189 1.360000e-29 141.0
46 TraesCS2B01G439600 chr1D 82.692 156 26 1 3330 3485 375372480 375372634 1.760000e-28 137.0
47 TraesCS2B01G439600 chr1D 82.014 139 24 1 3331 3469 464756951 464756814 2.300000e-22 117.0
48 TraesCS2B01G439600 chr1D 81.250 128 24 0 3331 3458 38672586 38672459 1.790000e-18 104.0
49 TraesCS2B01G439600 chr1D 78.065 155 32 2 3332 3485 104575718 104575871 2.990000e-16 97.1
50 TraesCS2B01G439600 chr1D 87.838 74 7 2 2039 2110 459625415 459625342 6.480000e-13 86.1
51 TraesCS2B01G439600 chr1A 70.300 1202 301 51 928 2102 551531771 551532943 1.330000e-44 191.0
52 TraesCS2B01G439600 chr1A 93.750 64 4 0 2039 2102 551786900 551786837 2.990000e-16 97.1
53 TraesCS2B01G439600 chr1A 90.385 52 5 0 2045 2096 552503044 552502993 6.530000e-08 69.4
54 TraesCS2B01G439600 chr7D 87.302 126 13 3 3353 3478 383230837 383230959 1.360000e-29 141.0
55 TraesCS2B01G439600 chr7D 80.503 159 29 2 3332 3489 613421535 613421378 1.780000e-23 121.0
56 TraesCS2B01G439600 chr7D 79.412 170 32 3 3314 3483 216135713 216135547 2.300000e-22 117.0
57 TraesCS2B01G439600 chr7D 77.778 207 35 7 3330 3529 623843684 623843886 2.300000e-22 117.0
58 TraesCS2B01G439600 chr6D 93.617 94 6 0 394 487 196357902 196357995 1.360000e-29 141.0
59 TraesCS2B01G439600 chr6D 83.212 137 22 1 3341 3477 23767139 23767004 1.370000e-24 124.0
60 TraesCS2B01G439600 chr6D 82.031 128 23 0 3331 3458 345386570 345386443 3.840000e-20 110.0
61 TraesCS2B01G439600 chr6D 80.620 129 25 0 3330 3458 289516030 289515902 2.310000e-17 100.0
62 TraesCS2B01G439600 chr3D 84.397 141 22 0 3330 3470 298064062 298064202 4.900000e-29 139.0
63 TraesCS2B01G439600 chr3D 93.617 94 5 1 401 493 429097593 429097500 4.900000e-29 139.0
64 TraesCS2B01G439600 chr3D 79.641 167 33 1 3312 3478 105245424 105245589 6.390000e-23 119.0
65 TraesCS2B01G439600 chr3D 81.905 105 15 3 2024 2125 575597093 575596990 6.480000e-13 86.1
66 TraesCS2B01G439600 chr5D 82.667 150 24 2 3330 3478 263162985 263162837 8.210000e-27 132.0
67 TraesCS2B01G439600 chr5D 86.275 51 7 0 2047 2097 365121836 365121786 5.080000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G439600 chr2B 631446630 631450271 3641 True 6726.000000 6726 100.000000 1 3642 1 chr2B.!!$R2 3641
1 TraesCS2B01G439600 chr2B 709829563 709831700 2137 True 1539.000000 1539 80.074000 523 2649 1 chr2B.!!$R3 2126
2 TraesCS2B01G439600 chr2A 676338016 676339906 1890 True 2667.000000 2667 92.255000 1764 3642 1 chr2A.!!$R1 1878
3 TraesCS2B01G439600 chr2A 676344633 676346157 1524 True 2362.000000 2362 94.626000 243 1768 1 chr2A.!!$R2 1525
4 TraesCS2B01G439600 chr2A 722208688 722210266 1578 True 1164.000000 1164 80.308000 523 2124 1 chr2A.!!$R3 1601
5 TraesCS2B01G439600 chr2D 531683383 531686579 3196 True 1523.333333 2508 93.422667 243 3285 3 chr2D.!!$R5 3042
6 TraesCS2B01G439600 chr2D 587297900 587300012 2112 True 1472.000000 1472 79.677000 523 2649 1 chr2D.!!$R3 2126

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
150 151 0.037697 TTCCGCTGCTATTGTGTCGT 60.038 50.000 0.0 0.0 0.0 4.34 F
635 639 0.951040 AAACCTGCCGAGAAAGCGAG 60.951 55.000 0.0 0.0 0.0 5.03 F
1819 2060 1.211949 GGCTTACCCTGCTGTCCAATA 59.788 52.381 0.0 0.0 0.0 1.90 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1758 1999 0.613260 ATGGAAGCTTGGCACGACTA 59.387 50.0 2.10 0.00 0.00 2.59 R
2304 2586 0.249911 GAGGTGGTCATGCCGGTATC 60.250 60.0 0.34 0.00 41.21 2.24 R
3534 3838 0.033405 AGCAAATGGATCCAGCAGCT 60.033 50.0 24.13 24.13 0.00 4.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 8.146053 TCCTAAATCCTAATTCTTCAGTCACA 57.854 34.615 0.00 0.00 0.00 3.58
26 27 8.772250 TCCTAAATCCTAATTCTTCAGTCACAT 58.228 33.333 0.00 0.00 0.00 3.21
30 31 9.606631 AAATCCTAATTCTTCAGTCACATAGTC 57.393 33.333 0.00 0.00 0.00 2.59
31 32 7.962995 TCCTAATTCTTCAGTCACATAGTCT 57.037 36.000 0.00 0.00 0.00 3.24
32 33 8.367660 TCCTAATTCTTCAGTCACATAGTCTT 57.632 34.615 0.00 0.00 0.00 3.01
33 34 8.470805 TCCTAATTCTTCAGTCACATAGTCTTC 58.529 37.037 0.00 0.00 0.00 2.87
34 35 8.253810 CCTAATTCTTCAGTCACATAGTCTTCA 58.746 37.037 0.00 0.00 0.00 3.02
35 36 9.299963 CTAATTCTTCAGTCACATAGTCTTCAG 57.700 37.037 0.00 0.00 0.00 3.02
36 37 5.065704 TCTTCAGTCACATAGTCTTCAGC 57.934 43.478 0.00 0.00 0.00 4.26
37 38 3.876274 TCAGTCACATAGTCTTCAGCC 57.124 47.619 0.00 0.00 0.00 4.85
38 39 3.435275 TCAGTCACATAGTCTTCAGCCT 58.565 45.455 0.00 0.00 0.00 4.58
39 40 3.194329 TCAGTCACATAGTCTTCAGCCTG 59.806 47.826 0.00 0.00 0.00 4.85
40 41 2.093764 AGTCACATAGTCTTCAGCCTGC 60.094 50.000 0.00 0.00 0.00 4.85
41 42 2.093764 GTCACATAGTCTTCAGCCTGCT 60.094 50.000 0.00 0.00 0.00 4.24
42 43 2.568956 TCACATAGTCTTCAGCCTGCTT 59.431 45.455 0.00 0.00 0.00 3.91
43 44 3.769300 TCACATAGTCTTCAGCCTGCTTA 59.231 43.478 0.00 0.00 0.00 3.09
44 45 4.406972 TCACATAGTCTTCAGCCTGCTTAT 59.593 41.667 0.00 0.00 0.00 1.73
45 46 4.749099 CACATAGTCTTCAGCCTGCTTATC 59.251 45.833 0.00 0.00 0.00 1.75
46 47 2.998316 AGTCTTCAGCCTGCTTATCC 57.002 50.000 0.00 0.00 0.00 2.59
47 48 2.476199 AGTCTTCAGCCTGCTTATCCT 58.524 47.619 0.00 0.00 0.00 3.24
48 49 2.170187 AGTCTTCAGCCTGCTTATCCTG 59.830 50.000 0.00 0.00 0.00 3.86
49 50 2.093235 GTCTTCAGCCTGCTTATCCTGT 60.093 50.000 0.00 0.00 0.00 4.00
50 51 2.573462 TCTTCAGCCTGCTTATCCTGTT 59.427 45.455 0.00 0.00 0.00 3.16
51 52 3.009473 TCTTCAGCCTGCTTATCCTGTTT 59.991 43.478 0.00 0.00 0.00 2.83
52 53 3.439857 TCAGCCTGCTTATCCTGTTTT 57.560 42.857 0.00 0.00 0.00 2.43
53 54 3.347216 TCAGCCTGCTTATCCTGTTTTC 58.653 45.455 0.00 0.00 0.00 2.29
54 55 3.084039 CAGCCTGCTTATCCTGTTTTCA 58.916 45.455 0.00 0.00 0.00 2.69
55 56 3.698040 CAGCCTGCTTATCCTGTTTTCAT 59.302 43.478 0.00 0.00 0.00 2.57
56 57 3.698040 AGCCTGCTTATCCTGTTTTCATG 59.302 43.478 0.00 0.00 0.00 3.07
57 58 3.736126 GCCTGCTTATCCTGTTTTCATGC 60.736 47.826 0.00 0.00 0.00 4.06
58 59 3.698040 CCTGCTTATCCTGTTTTCATGCT 59.302 43.478 0.00 0.00 0.00 3.79
59 60 4.883585 CCTGCTTATCCTGTTTTCATGCTA 59.116 41.667 0.00 0.00 0.00 3.49
60 61 5.533903 CCTGCTTATCCTGTTTTCATGCTAT 59.466 40.000 0.00 0.00 0.00 2.97
61 62 6.040166 CCTGCTTATCCTGTTTTCATGCTATT 59.960 38.462 0.00 0.00 0.00 1.73
62 63 7.408756 TGCTTATCCTGTTTTCATGCTATTT 57.591 32.000 0.00 0.00 0.00 1.40
63 64 7.259882 TGCTTATCCTGTTTTCATGCTATTTG 58.740 34.615 0.00 0.00 0.00 2.32
64 65 7.093814 TGCTTATCCTGTTTTCATGCTATTTGT 60.094 33.333 0.00 0.00 0.00 2.83
65 66 8.405531 GCTTATCCTGTTTTCATGCTATTTGTA 58.594 33.333 0.00 0.00 0.00 2.41
66 67 9.722056 CTTATCCTGTTTTCATGCTATTTGTAC 57.278 33.333 0.00 0.00 0.00 2.90
67 68 7.944729 ATCCTGTTTTCATGCTATTTGTACT 57.055 32.000 0.00 0.00 0.00 2.73
68 69 7.377766 TCCTGTTTTCATGCTATTTGTACTC 57.622 36.000 0.00 0.00 0.00 2.59
69 70 7.168219 TCCTGTTTTCATGCTATTTGTACTCT 58.832 34.615 0.00 0.00 0.00 3.24
70 71 7.119699 TCCTGTTTTCATGCTATTTGTACTCTG 59.880 37.037 0.00 0.00 0.00 3.35
71 72 7.094634 CCTGTTTTCATGCTATTTGTACTCTGT 60.095 37.037 0.00 0.00 0.00 3.41
72 73 7.584108 TGTTTTCATGCTATTTGTACTCTGTG 58.416 34.615 0.00 0.00 0.00 3.66
73 74 5.801350 TTCATGCTATTTGTACTCTGTGC 57.199 39.130 0.00 0.00 0.00 4.57
74 75 5.089970 TCATGCTATTTGTACTCTGTGCT 57.910 39.130 0.00 0.00 0.00 4.40
75 76 5.491070 TCATGCTATTTGTACTCTGTGCTT 58.509 37.500 0.00 0.00 0.00 3.91
76 77 5.352293 TCATGCTATTTGTACTCTGTGCTTG 59.648 40.000 0.00 2.96 0.00 4.01
77 78 4.641396 TGCTATTTGTACTCTGTGCTTGT 58.359 39.130 0.00 0.00 0.00 3.16
78 79 5.063204 TGCTATTTGTACTCTGTGCTTGTT 58.937 37.500 0.00 0.00 0.00 2.83
79 80 5.530915 TGCTATTTGTACTCTGTGCTTGTTT 59.469 36.000 0.00 0.00 0.00 2.83
80 81 6.039270 TGCTATTTGTACTCTGTGCTTGTTTT 59.961 34.615 0.00 0.00 0.00 2.43
81 82 6.578919 GCTATTTGTACTCTGTGCTTGTTTTC 59.421 38.462 0.00 0.00 0.00 2.29
82 83 5.888691 TTTGTACTCTGTGCTTGTTTTCA 57.111 34.783 0.00 0.00 0.00 2.69
83 84 6.449635 TTTGTACTCTGTGCTTGTTTTCAT 57.550 33.333 0.00 0.00 0.00 2.57
84 85 5.673337 TGTACTCTGTGCTTGTTTTCATC 57.327 39.130 0.00 0.00 0.00 2.92
85 86 5.122519 TGTACTCTGTGCTTGTTTTCATCA 58.877 37.500 0.00 0.00 0.00 3.07
86 87 5.764686 TGTACTCTGTGCTTGTTTTCATCAT 59.235 36.000 0.00 0.00 0.00 2.45
87 88 5.117355 ACTCTGTGCTTGTTTTCATCATG 57.883 39.130 0.00 0.00 0.00 3.07
88 89 4.823442 ACTCTGTGCTTGTTTTCATCATGA 59.177 37.500 0.00 0.00 0.00 3.07
89 90 5.475909 ACTCTGTGCTTGTTTTCATCATGAT 59.524 36.000 1.18 1.18 0.00 2.45
90 91 5.705902 TCTGTGCTTGTTTTCATCATGATG 58.294 37.500 26.79 26.79 40.09 3.07
91 92 5.474189 TCTGTGCTTGTTTTCATCATGATGA 59.526 36.000 30.27 30.27 45.30 2.92
92 93 5.463286 TGTGCTTGTTTTCATCATGATGAC 58.537 37.500 33.02 23.67 46.49 3.06
93 94 5.242171 TGTGCTTGTTTTCATCATGATGACT 59.758 36.000 33.02 0.00 46.49 3.41
94 95 6.430616 TGTGCTTGTTTTCATCATGATGACTA 59.569 34.615 33.02 22.43 46.49 2.59
95 96 7.121611 TGTGCTTGTTTTCATCATGATGACTAT 59.878 33.333 33.02 0.00 46.49 2.12
96 97 7.431376 GTGCTTGTTTTCATCATGATGACTATG 59.569 37.037 33.02 21.69 46.49 2.23
97 98 7.121611 TGCTTGTTTTCATCATGATGACTATGT 59.878 33.333 33.02 0.00 46.49 2.29
98 99 7.972277 GCTTGTTTTCATCATGATGACTATGTT 59.028 33.333 33.02 0.00 46.49 2.71
99 100 9.285770 CTTGTTTTCATCATGATGACTATGTTG 57.714 33.333 33.02 18.31 46.49 3.33
100 101 8.339344 TGTTTTCATCATGATGACTATGTTGT 57.661 30.769 33.02 0.00 46.49 3.32
101 102 8.795513 TGTTTTCATCATGATGACTATGTTGTT 58.204 29.630 33.02 0.00 46.49 2.83
102 103 9.069078 GTTTTCATCATGATGACTATGTTGTTG 57.931 33.333 33.02 7.75 46.49 3.33
103 104 6.367686 TCATCATGATGACTATGTTGTTGC 57.632 37.500 30.27 0.00 42.42 4.17
104 105 6.117488 TCATCATGATGACTATGTTGTTGCT 58.883 36.000 30.27 0.00 42.42 3.91
105 106 6.259387 TCATCATGATGACTATGTTGTTGCTC 59.741 38.462 30.27 0.00 42.42 4.26
106 107 5.737860 TCATGATGACTATGTTGTTGCTCT 58.262 37.500 0.00 0.00 0.00 4.09
107 108 5.583457 TCATGATGACTATGTTGTTGCTCTG 59.417 40.000 0.00 0.00 0.00 3.35
108 109 4.898320 TGATGACTATGTTGTTGCTCTGT 58.102 39.130 0.00 0.00 0.00 3.41
109 110 5.308014 TGATGACTATGTTGTTGCTCTGTT 58.692 37.500 0.00 0.00 0.00 3.16
110 111 6.463360 TGATGACTATGTTGTTGCTCTGTTA 58.537 36.000 0.00 0.00 0.00 2.41
111 112 7.105588 TGATGACTATGTTGTTGCTCTGTTAT 58.894 34.615 0.00 0.00 0.00 1.89
112 113 6.726258 TGACTATGTTGTTGCTCTGTTATG 57.274 37.500 0.00 0.00 0.00 1.90
113 114 5.122239 TGACTATGTTGTTGCTCTGTTATGC 59.878 40.000 0.00 0.00 0.00 3.14
114 115 5.248640 ACTATGTTGTTGCTCTGTTATGCT 58.751 37.500 0.00 0.00 0.00 3.79
115 116 5.707298 ACTATGTTGTTGCTCTGTTATGCTT 59.293 36.000 0.00 0.00 0.00 3.91
116 117 6.878923 ACTATGTTGTTGCTCTGTTATGCTTA 59.121 34.615 0.00 0.00 0.00 3.09
117 118 6.764308 ATGTTGTTGCTCTGTTATGCTTAT 57.236 33.333 0.00 0.00 0.00 1.73
118 119 7.864108 ATGTTGTTGCTCTGTTATGCTTATA 57.136 32.000 0.00 0.00 0.00 0.98
119 120 7.072177 TGTTGTTGCTCTGTTATGCTTATAC 57.928 36.000 0.00 0.00 0.00 1.47
120 121 6.093495 TGTTGTTGCTCTGTTATGCTTATACC 59.907 38.462 0.00 0.00 0.00 2.73
121 122 5.989477 TGTTGCTCTGTTATGCTTATACCT 58.011 37.500 0.00 0.00 0.00 3.08
122 123 5.817296 TGTTGCTCTGTTATGCTTATACCTG 59.183 40.000 0.00 0.00 0.00 4.00
123 124 5.869649 TGCTCTGTTATGCTTATACCTGA 57.130 39.130 0.00 0.00 0.00 3.86
124 125 5.847304 TGCTCTGTTATGCTTATACCTGAG 58.153 41.667 0.00 0.00 0.00 3.35
125 126 5.363868 TGCTCTGTTATGCTTATACCTGAGT 59.636 40.000 0.00 0.00 0.00 3.41
126 127 6.549736 TGCTCTGTTATGCTTATACCTGAGTA 59.450 38.462 0.00 0.00 0.00 2.59
127 128 6.864165 GCTCTGTTATGCTTATACCTGAGTAC 59.136 42.308 0.00 0.00 0.00 2.73
128 129 7.255660 GCTCTGTTATGCTTATACCTGAGTACT 60.256 40.741 0.00 0.00 0.00 2.73
129 130 8.534954 TCTGTTATGCTTATACCTGAGTACTT 57.465 34.615 0.00 0.00 0.00 2.24
130 131 9.636789 TCTGTTATGCTTATACCTGAGTACTTA 57.363 33.333 0.00 0.00 0.00 2.24
135 136 6.978338 TGCTTATACCTGAGTACTTATTCCG 58.022 40.000 0.00 0.00 0.00 4.30
136 137 5.862860 GCTTATACCTGAGTACTTATTCCGC 59.137 44.000 0.00 0.00 0.00 5.54
137 138 6.294620 GCTTATACCTGAGTACTTATTCCGCT 60.295 42.308 0.00 0.00 0.00 5.52
138 139 3.802948 ACCTGAGTACTTATTCCGCTG 57.197 47.619 0.00 0.00 0.00 5.18
139 140 2.159085 ACCTGAGTACTTATTCCGCTGC 60.159 50.000 0.00 0.00 0.00 5.25
140 141 2.101582 CCTGAGTACTTATTCCGCTGCT 59.898 50.000 0.00 0.00 0.00 4.24
141 142 3.318275 CCTGAGTACTTATTCCGCTGCTA 59.682 47.826 0.00 0.00 0.00 3.49
142 143 4.021894 CCTGAGTACTTATTCCGCTGCTAT 60.022 45.833 0.00 0.00 0.00 2.97
143 144 5.509840 CCTGAGTACTTATTCCGCTGCTATT 60.510 44.000 0.00 0.00 0.00 1.73
144 145 5.289595 TGAGTACTTATTCCGCTGCTATTG 58.710 41.667 0.00 0.00 0.00 1.90
145 146 5.163447 TGAGTACTTATTCCGCTGCTATTGT 60.163 40.000 0.00 0.00 0.00 2.71
146 147 5.050490 AGTACTTATTCCGCTGCTATTGTG 58.950 41.667 0.00 0.00 0.00 3.33
147 148 3.873910 ACTTATTCCGCTGCTATTGTGT 58.126 40.909 0.00 0.00 0.00 3.72
148 149 3.871594 ACTTATTCCGCTGCTATTGTGTC 59.128 43.478 0.00 0.00 0.00 3.67
149 150 1.290203 ATTCCGCTGCTATTGTGTCG 58.710 50.000 0.00 0.00 0.00 4.35
150 151 0.037697 TTCCGCTGCTATTGTGTCGT 60.038 50.000 0.00 0.00 0.00 4.34
151 152 0.037697 TCCGCTGCTATTGTGTCGTT 60.038 50.000 0.00 0.00 0.00 3.85
152 153 1.202817 TCCGCTGCTATTGTGTCGTTA 59.797 47.619 0.00 0.00 0.00 3.18
153 154 1.323534 CCGCTGCTATTGTGTCGTTAC 59.676 52.381 0.00 0.00 0.00 2.50
154 155 2.259618 CGCTGCTATTGTGTCGTTACT 58.740 47.619 0.00 0.00 0.00 2.24
155 156 2.666508 CGCTGCTATTGTGTCGTTACTT 59.333 45.455 0.00 0.00 0.00 2.24
156 157 3.855379 CGCTGCTATTGTGTCGTTACTTA 59.145 43.478 0.00 0.00 0.00 2.24
157 158 4.027621 CGCTGCTATTGTGTCGTTACTTAG 60.028 45.833 0.00 0.00 0.00 2.18
158 159 4.267928 GCTGCTATTGTGTCGTTACTTAGG 59.732 45.833 0.00 0.00 0.00 2.69
159 160 5.647589 CTGCTATTGTGTCGTTACTTAGGA 58.352 41.667 0.00 0.00 0.00 2.94
160 161 6.028146 TGCTATTGTGTCGTTACTTAGGAA 57.972 37.500 0.00 0.00 0.00 3.36
161 162 6.636705 TGCTATTGTGTCGTTACTTAGGAAT 58.363 36.000 0.00 0.00 0.00 3.01
162 163 7.101054 TGCTATTGTGTCGTTACTTAGGAATT 58.899 34.615 0.00 0.00 0.00 2.17
163 164 7.604927 TGCTATTGTGTCGTTACTTAGGAATTT 59.395 33.333 0.00 0.00 0.00 1.82
164 165 8.114905 GCTATTGTGTCGTTACTTAGGAATTTC 58.885 37.037 0.00 0.00 0.00 2.17
165 166 9.367444 CTATTGTGTCGTTACTTAGGAATTTCT 57.633 33.333 0.00 0.00 0.00 2.52
166 167 8.617290 ATTGTGTCGTTACTTAGGAATTTCTT 57.383 30.769 0.00 0.00 0.00 2.52
167 168 7.647907 TGTGTCGTTACTTAGGAATTTCTTC 57.352 36.000 0.00 0.00 0.00 2.87
168 169 7.211573 TGTGTCGTTACTTAGGAATTTCTTCA 58.788 34.615 0.00 0.00 32.70 3.02
169 170 7.170320 TGTGTCGTTACTTAGGAATTTCTTCAC 59.830 37.037 0.00 0.00 32.70 3.18
170 171 7.384387 GTGTCGTTACTTAGGAATTTCTTCACT 59.616 37.037 0.00 0.00 32.70 3.41
171 172 7.929785 TGTCGTTACTTAGGAATTTCTTCACTT 59.070 33.333 0.00 0.00 32.70 3.16
172 173 9.415544 GTCGTTACTTAGGAATTTCTTCACTTA 57.584 33.333 0.00 0.00 32.70 2.24
173 174 9.635520 TCGTTACTTAGGAATTTCTTCACTTAG 57.364 33.333 0.00 0.00 32.70 2.18
174 175 9.635520 CGTTACTTAGGAATTTCTTCACTTAGA 57.364 33.333 0.00 0.00 32.70 2.10
195 196 9.760660 CTTAGAAATTCCTAAGTGACGAATTTG 57.239 33.333 11.71 0.00 43.03 2.32
196 197 7.745620 AGAAATTCCTAAGTGACGAATTTGT 57.254 32.000 11.71 0.00 43.03 2.83
197 198 8.842358 AGAAATTCCTAAGTGACGAATTTGTA 57.158 30.769 11.71 0.00 43.03 2.41
198 199 9.280174 AGAAATTCCTAAGTGACGAATTTGTAA 57.720 29.630 11.71 0.00 43.03 2.41
199 200 9.887406 GAAATTCCTAAGTGACGAATTTGTAAA 57.113 29.630 11.71 0.00 43.03 2.01
203 204 9.887406 TTCCTAAGTGACGAATTTGTAAAAATC 57.113 29.630 0.00 0.00 0.00 2.17
204 205 8.225107 TCCTAAGTGACGAATTTGTAAAAATCG 58.775 33.333 8.26 8.26 37.34 3.34
205 206 6.669485 AAGTGACGAATTTGTAAAAATCGC 57.331 33.333 9.45 4.63 35.83 4.58
206 207 5.151389 AGTGACGAATTTGTAAAAATCGCC 58.849 37.500 9.45 0.83 35.83 5.54
207 208 5.048991 AGTGACGAATTTGTAAAAATCGCCT 60.049 36.000 9.45 2.39 35.83 5.52
208 209 6.148150 AGTGACGAATTTGTAAAAATCGCCTA 59.852 34.615 9.45 0.00 35.83 3.93
209 210 6.964934 GTGACGAATTTGTAAAAATCGCCTAT 59.035 34.615 9.45 0.00 35.83 2.57
210 211 7.483691 GTGACGAATTTGTAAAAATCGCCTATT 59.516 33.333 9.45 0.00 35.83 1.73
211 212 7.694784 TGACGAATTTGTAAAAATCGCCTATTC 59.305 33.333 9.45 1.98 35.83 1.75
212 213 7.531716 ACGAATTTGTAAAAATCGCCTATTCA 58.468 30.769 9.45 0.00 35.83 2.57
213 214 7.483691 ACGAATTTGTAAAAATCGCCTATTCAC 59.516 33.333 9.45 0.00 35.83 3.18
214 215 7.044314 CGAATTTGTAAAAATCGCCTATTCACC 60.044 37.037 0.00 0.00 0.00 4.02
215 216 5.570234 TTGTAAAAATCGCCTATTCACCC 57.430 39.130 0.00 0.00 0.00 4.61
216 217 3.949113 TGTAAAAATCGCCTATTCACCCC 59.051 43.478 0.00 0.00 0.00 4.95
217 218 2.067365 AAAATCGCCTATTCACCCCC 57.933 50.000 0.00 0.00 0.00 5.40
235 236 4.189639 CCCCCTCTAGTCAATATAACGC 57.810 50.000 0.00 0.00 0.00 4.84
236 237 3.576982 CCCCCTCTAGTCAATATAACGCA 59.423 47.826 0.00 0.00 0.00 5.24
237 238 4.557205 CCCCTCTAGTCAATATAACGCAC 58.443 47.826 0.00 0.00 0.00 5.34
238 239 4.281182 CCCCTCTAGTCAATATAACGCACT 59.719 45.833 0.00 0.00 0.00 4.40
239 240 5.221461 CCCCTCTAGTCAATATAACGCACTT 60.221 44.000 0.00 0.00 0.00 3.16
240 241 6.281405 CCCTCTAGTCAATATAACGCACTTT 58.719 40.000 0.00 0.00 0.00 2.66
241 242 6.421202 CCCTCTAGTCAATATAACGCACTTTC 59.579 42.308 0.00 0.00 0.00 2.62
288 289 3.659183 ATGCAAGGAACTAAGATGCCT 57.341 42.857 0.00 0.00 37.64 4.75
290 291 2.019984 GCAAGGAACTAAGATGCCTGG 58.980 52.381 0.00 0.00 38.49 4.45
299 300 5.297569 ACTAAGATGCCTGGTAGGAAATC 57.702 43.478 0.00 1.54 37.67 2.17
428 431 6.053005 CCCTCCGTAAACAAATATAAGAGCA 58.947 40.000 0.00 0.00 0.00 4.26
480 483 6.702282 ACGCTCTTATATTTCTTTACAGAGGC 59.298 38.462 0.00 0.00 0.00 4.70
513 516 7.065443 GCTTACCGTTCCTACTTTTGTAATCAT 59.935 37.037 0.00 0.00 34.06 2.45
561 565 9.472361 GGATGAACAAAATTGATATCAATGAGG 57.528 33.333 27.46 20.96 45.06 3.86
573 577 3.084536 TCAATGAGGCCAAATGCACTA 57.915 42.857 5.01 0.00 43.89 2.74
589 593 1.284785 CACTAAAGGCAGGGGATGGAA 59.715 52.381 0.00 0.00 0.00 3.53
635 639 0.951040 AAACCTGCCGAGAAAGCGAG 60.951 55.000 0.00 0.00 0.00 5.03
653 657 1.283321 GAGATTCTTCAAGGTGCCCCT 59.717 52.381 0.00 0.00 45.63 4.79
747 753 2.368439 TCTGGTGGTAGATGCATTTGC 58.632 47.619 0.00 0.00 42.50 3.68
800 815 8.810427 GTTATTAATCAACAATCTTGCATGGTG 58.190 33.333 0.00 0.00 35.56 4.17
801 816 2.728690 TCAACAATCTTGCATGGTGC 57.271 45.000 0.00 0.00 45.29 5.01
813 828 1.532505 GCATGGTGCATTCGCTAACAG 60.533 52.381 0.00 0.00 44.26 3.16
897 914 5.903530 CACGCATGTGCTAGTTATAACAATG 59.096 40.000 17.65 11.11 39.67 2.82
1162 1189 5.816777 CACATCAACAAAGTGGACCAAATTT 59.183 36.000 0.00 0.00 0.00 1.82
1164 1191 6.315891 ACATCAACAAAGTGGACCAAATTTTG 59.684 34.615 18.64 18.64 35.47 2.44
1252 1279 2.763448 GTGAGTGCCTTCTATCTGGACT 59.237 50.000 0.00 0.00 0.00 3.85
1327 1354 4.991056 TGTCTCGTTCCATGAAAGAAGAAG 59.009 41.667 0.00 0.00 30.69 2.85
1329 1356 5.872070 GTCTCGTTCCATGAAAGAAGAAGAT 59.128 40.000 0.00 0.00 30.69 2.40
1349 1570 5.528870 AGATTGTTTTCCATGTTCGGTTTC 58.471 37.500 0.00 0.00 0.00 2.78
1355 1576 3.932545 TCCATGTTCGGTTTCATTTGG 57.067 42.857 0.00 0.00 0.00 3.28
1357 1578 2.288702 CCATGTTCGGTTTCATTTGGCA 60.289 45.455 0.00 0.00 0.00 4.92
1468 1709 7.499895 TGAAAAGTTTAGACCTATTCCGTGTTT 59.500 33.333 0.00 0.00 0.00 2.83
1523 1764 7.308229 GCTCTCAAAATCTTTCAGCTTAGAACA 60.308 37.037 0.00 0.00 0.00 3.18
1538 1779 8.734386 CAGCTTAGAACAGTTGGAGATATTTTT 58.266 33.333 0.00 0.00 0.00 1.94
1593 1834 7.867403 CCATGTACAGTGCAGAAACTTAATTTT 59.133 33.333 0.33 0.00 0.00 1.82
1677 1918 3.885976 TTTCACTATGTTGGGTTCCCA 57.114 42.857 6.46 6.46 0.00 4.37
1712 1953 5.896073 ATCGGAGATTCTTCCCAACTTAT 57.104 39.130 0.00 0.00 45.12 1.73
1758 1999 7.969690 ATATCCGTCCAGAATCATCTCTTAT 57.030 36.000 0.00 0.00 32.03 1.73
1816 2057 1.538876 AGGCTTACCCTGCTGTCCA 60.539 57.895 0.00 0.00 44.28 4.02
1819 2060 1.211949 GGCTTACCCTGCTGTCCAATA 59.788 52.381 0.00 0.00 0.00 1.90
1828 2069 3.430929 CCTGCTGTCCAATAGTGAGGTAC 60.431 52.174 0.00 0.00 0.00 3.34
1855 2097 8.925700 GTTTTGGGTTTACATTTCAATCAGATC 58.074 33.333 0.00 0.00 0.00 2.75
1933 2175 6.884832 TCACTCTTAGGACTTTGTTCTTCAA 58.115 36.000 0.00 0.00 0.00 2.69
1956 2198 3.213206 TGTGAACACTCCAATGCTTCT 57.787 42.857 6.51 0.00 0.00 2.85
2010 2252 2.181125 TGTACTTAACGGATCAGGGCA 58.819 47.619 0.00 0.00 0.00 5.36
2037 2279 4.431378 TCCCCTGTCTATGACACCTTTTA 58.569 43.478 0.00 0.00 37.67 1.52
2083 2325 4.474651 TCTCCTGCCTTGGAATCTTTCATA 59.525 41.667 0.00 0.00 35.43 2.15
2198 2450 9.606631 CTTCTAAACTACTGCTTATCAAGGAAT 57.393 33.333 0.00 0.00 0.00 3.01
2206 2458 9.853555 CTACTGCTTATCAAGGAATAGTGATAG 57.146 37.037 0.00 0.00 0.00 2.08
2240 2516 7.446013 TGATGCTACATCATCATTTGCAGATAA 59.554 33.333 6.17 0.00 45.50 1.75
2276 2558 7.177216 CCATAATACATTATTGTGATGCTGGGT 59.823 37.037 0.48 0.00 38.93 4.51
2288 2570 1.524621 GCTGGGTGCGATGCATACT 60.525 57.895 0.00 0.00 41.91 2.12
2304 2586 3.751518 CATACTTAAGGGGGAAATCGGG 58.248 50.000 7.53 0.00 0.00 5.14
2503 2785 4.152223 GCAAGAATGTTGGGTAAATGTTGC 59.848 41.667 0.00 0.00 0.00 4.17
2505 2787 5.391312 AGAATGTTGGGTAAATGTTGCTC 57.609 39.130 0.00 0.00 0.00 4.26
2530 2814 4.148079 TGAGTGAGAGAGCTCTTGAAGAA 58.852 43.478 19.36 0.00 40.61 2.52
2536 2820 5.105797 TGAGAGAGCTCTTGAAGAAGCTAAG 60.106 44.000 19.36 0.00 40.61 2.18
2541 2825 5.016173 AGCTCTTGAAGAAGCTAAGAGAGA 58.984 41.667 21.97 6.45 46.44 3.10
2547 2831 5.174395 TGAAGAAGCTAAGAGAGATGTTGC 58.826 41.667 0.00 0.00 0.00 4.17
2576 2860 4.214545 CGAGTAGATACATCACTGGGAGAC 59.785 50.000 0.00 0.00 0.00 3.36
2591 2875 3.907474 TGGGAGACTTCCATCAACTGTTA 59.093 43.478 0.00 0.00 45.98 2.41
2660 2944 6.348498 CAGTAGATGGATGATTGTGTGGTTA 58.652 40.000 0.00 0.00 0.00 2.85
2664 2948 6.957631 AGATGGATGATTGTGTGGTTAGTTA 58.042 36.000 0.00 0.00 0.00 2.24
2665 2949 7.402054 AGATGGATGATTGTGTGGTTAGTTAA 58.598 34.615 0.00 0.00 0.00 2.01
2666 2950 6.811253 TGGATGATTGTGTGGTTAGTTAAC 57.189 37.500 0.00 0.00 35.50 2.01
2667 2951 6.299922 TGGATGATTGTGTGGTTAGTTAACA 58.700 36.000 8.61 0.00 37.92 2.41
2670 2954 8.303876 GGATGATTGTGTGGTTAGTTAACATTT 58.696 33.333 8.61 0.00 37.92 2.32
2718 3008 2.350197 GCGGCTCATCAGATATTTGCAC 60.350 50.000 0.00 0.00 0.00 4.57
2758 3048 5.333566 AATTCCCTTTAACCCTCAAGTCA 57.666 39.130 0.00 0.00 0.00 3.41
2772 3062 1.268899 CAAGTCAGAAAGCTTGGCTGG 59.731 52.381 22.30 4.42 39.62 4.85
2776 3066 0.316204 CAGAAAGCTTGGCTGGTTGG 59.684 55.000 17.52 0.00 39.62 3.77
2801 3091 2.438021 TCAACTATGAGGCCATACACCC 59.562 50.000 5.01 0.00 34.31 4.61
2921 3211 3.802866 TGCAGCGATGATACAATACCAA 58.197 40.909 4.02 0.00 0.00 3.67
2966 3256 2.012673 CTGCATCTAAGGCTCACAACC 58.987 52.381 0.00 0.00 0.00 3.77
3011 3301 2.086869 GAGGGTCACATGTCACATTGG 58.913 52.381 1.20 0.00 0.00 3.16
3013 3303 2.158475 AGGGTCACATGTCACATTGGTT 60.158 45.455 1.20 0.00 0.00 3.67
3065 3355 1.595466 ACCCGTTGTGCAAATTCGTA 58.405 45.000 0.00 0.00 0.00 3.43
3106 3396 3.645687 TGGTTTTGAAAGATTTGGAGGGG 59.354 43.478 0.00 0.00 0.00 4.79
3154 3444 2.099652 TTGGCGAGCCATATCCCGAG 62.100 60.000 18.32 0.00 46.64 4.63
3218 3512 4.870426 GCGAAACTGAAACCAGAGATCATA 59.130 41.667 0.00 0.00 35.67 2.15
3251 3545 8.960591 GGCTATATTACAACCTCATAATGCATT 58.039 33.333 17.56 17.56 0.00 3.56
3262 3556 5.221028 CCTCATAATGCATTACCGAAGCAAA 60.221 40.000 21.10 0.00 42.15 3.68
3330 3624 1.593750 GAGCATCTACAGCCAGGCG 60.594 63.158 5.55 3.56 0.00 5.52
3338 3632 2.028125 TACAGCCAGGCGCCTCATAC 62.028 60.000 30.29 16.29 38.78 2.39
3339 3633 3.083349 AGCCAGGCGCCTCATACA 61.083 61.111 30.29 0.00 38.78 2.29
3373 3667 2.297315 GCCTGATCACTGACCGATCATA 59.703 50.000 3.49 0.00 46.11 2.15
3380 3674 8.279970 TGATCACTGACCGATCATAAAATTTT 57.720 30.769 8.75 8.75 43.30 1.82
3385 3679 6.432783 ACTGACCGATCATAAAATTTTGACCA 59.567 34.615 13.76 0.00 33.22 4.02
3390 3684 6.098679 CGATCATAAAATTTTGACCAAGGCA 58.901 36.000 13.76 0.00 0.00 4.75
3411 3705 1.002773 GGCTCCTTAAACGGGTCTCAA 59.997 52.381 0.00 0.00 0.00 3.02
3423 3717 2.045045 TCTCAAATGCCCGGGCTG 60.045 61.111 43.34 33.23 42.51 4.85
3498 3802 0.249322 CACGTCGGACCTGACAGTTT 60.249 55.000 14.16 0.00 38.84 2.66
3531 3835 0.909133 ATTGCACCAAATCCACCCCC 60.909 55.000 0.00 0.00 0.00 5.40
3532 3836 2.119391 GCACCAAATCCACCCCCA 59.881 61.111 0.00 0.00 0.00 4.96
3533 3837 1.984026 GCACCAAATCCACCCCCAG 60.984 63.158 0.00 0.00 0.00 4.45
3534 3838 1.773635 CACCAAATCCACCCCCAGA 59.226 57.895 0.00 0.00 0.00 3.86
3535 3839 0.323725 CACCAAATCCACCCCCAGAG 60.324 60.000 0.00 0.00 0.00 3.35
3536 3840 1.380380 CCAAATCCACCCCCAGAGC 60.380 63.158 0.00 0.00 0.00 4.09
3537 3841 1.693640 CAAATCCACCCCCAGAGCT 59.306 57.895 0.00 0.00 0.00 4.09
3538 3842 0.682209 CAAATCCACCCCCAGAGCTG 60.682 60.000 0.00 0.00 0.00 4.24
3539 3843 2.505364 AAATCCACCCCCAGAGCTGC 62.505 60.000 0.00 0.00 0.00 5.25
3554 3859 0.102481 GCTGCTGGATCCATTTGCTG 59.898 55.000 16.63 19.09 0.00 4.41
3576 3881 2.666317 CTCCTCTCTTCTTCCTCCTCC 58.334 57.143 0.00 0.00 0.00 4.30
3577 3882 2.244769 CTCCTCTCTTCTTCCTCCTCCT 59.755 54.545 0.00 0.00 0.00 3.69
3579 3884 2.297701 CTCTCTTCTTCCTCCTCCTCG 58.702 57.143 0.00 0.00 0.00 4.63
3580 3885 0.744281 CTCTTCTTCCTCCTCCTCGC 59.256 60.000 0.00 0.00 0.00 5.03
3583 3888 4.214327 CTTCCTCCTCCTCGCCGC 62.214 72.222 0.00 0.00 0.00 6.53
3633 3938 0.741221 CCGCAACTGTTCCTAGCCTC 60.741 60.000 0.00 0.00 0.00 4.70
3637 3942 1.002430 CAACTGTTCCTAGCCTCTGCA 59.998 52.381 0.00 0.00 41.13 4.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 8.146053 TGTGACTGAAGAATTAGGATTTAGGA 57.854 34.615 0.00 0.00 0.00 2.94
1 2 8.970859 ATGTGACTGAAGAATTAGGATTTAGG 57.029 34.615 0.00 0.00 0.00 2.69
4 5 9.606631 GACTATGTGACTGAAGAATTAGGATTT 57.393 33.333 0.00 0.00 0.00 2.17
5 6 8.986991 AGACTATGTGACTGAAGAATTAGGATT 58.013 33.333 0.00 0.00 0.00 3.01
6 7 8.546083 AGACTATGTGACTGAAGAATTAGGAT 57.454 34.615 0.00 0.00 0.00 3.24
7 8 7.962995 AGACTATGTGACTGAAGAATTAGGA 57.037 36.000 0.00 0.00 0.00 2.94
8 9 8.253810 TGAAGACTATGTGACTGAAGAATTAGG 58.746 37.037 0.00 0.00 0.00 2.69
9 10 9.299963 CTGAAGACTATGTGACTGAAGAATTAG 57.700 37.037 0.00 0.00 0.00 1.73
10 11 7.761704 GCTGAAGACTATGTGACTGAAGAATTA 59.238 37.037 0.00 0.00 0.00 1.40
11 12 6.593382 GCTGAAGACTATGTGACTGAAGAATT 59.407 38.462 0.00 0.00 0.00 2.17
12 13 6.105333 GCTGAAGACTATGTGACTGAAGAAT 58.895 40.000 0.00 0.00 0.00 2.40
13 14 5.473931 GCTGAAGACTATGTGACTGAAGAA 58.526 41.667 0.00 0.00 0.00 2.52
14 15 4.081972 GGCTGAAGACTATGTGACTGAAGA 60.082 45.833 0.00 0.00 0.00 2.87
15 16 4.081752 AGGCTGAAGACTATGTGACTGAAG 60.082 45.833 0.00 0.00 0.00 3.02
16 17 3.834813 AGGCTGAAGACTATGTGACTGAA 59.165 43.478 0.00 0.00 0.00 3.02
17 18 3.194329 CAGGCTGAAGACTATGTGACTGA 59.806 47.826 9.42 0.00 0.00 3.41
18 19 3.519579 CAGGCTGAAGACTATGTGACTG 58.480 50.000 9.42 0.00 0.00 3.51
19 20 2.093764 GCAGGCTGAAGACTATGTGACT 60.094 50.000 20.86 0.00 0.00 3.41
20 21 2.093764 AGCAGGCTGAAGACTATGTGAC 60.094 50.000 20.86 0.00 0.00 3.67
21 22 2.182827 AGCAGGCTGAAGACTATGTGA 58.817 47.619 20.86 0.00 0.00 3.58
22 23 2.687700 AGCAGGCTGAAGACTATGTG 57.312 50.000 20.86 0.00 0.00 3.21
23 24 4.202305 GGATAAGCAGGCTGAAGACTATGT 60.202 45.833 20.86 0.00 0.00 2.29
24 25 4.040217 AGGATAAGCAGGCTGAAGACTATG 59.960 45.833 20.86 0.00 0.00 2.23
25 26 4.040217 CAGGATAAGCAGGCTGAAGACTAT 59.960 45.833 20.86 6.34 0.00 2.12
26 27 3.386078 CAGGATAAGCAGGCTGAAGACTA 59.614 47.826 20.86 1.35 0.00 2.59
27 28 2.170187 CAGGATAAGCAGGCTGAAGACT 59.830 50.000 20.86 2.07 0.00 3.24
28 29 2.093235 ACAGGATAAGCAGGCTGAAGAC 60.093 50.000 20.86 0.00 0.00 3.01
29 30 2.191400 ACAGGATAAGCAGGCTGAAGA 58.809 47.619 20.86 1.41 0.00 2.87
30 31 2.706339 ACAGGATAAGCAGGCTGAAG 57.294 50.000 20.86 0.00 0.00 3.02
31 32 3.439857 AAACAGGATAAGCAGGCTGAA 57.560 42.857 20.86 2.52 0.00 3.02
32 33 3.244875 TGAAAACAGGATAAGCAGGCTGA 60.245 43.478 20.86 0.00 0.00 4.26
33 34 3.084039 TGAAAACAGGATAAGCAGGCTG 58.916 45.455 10.94 10.94 0.00 4.85
34 35 3.439857 TGAAAACAGGATAAGCAGGCT 57.560 42.857 0.00 0.00 0.00 4.58
35 36 3.736126 GCATGAAAACAGGATAAGCAGGC 60.736 47.826 0.00 0.00 0.00 4.85
36 37 3.698040 AGCATGAAAACAGGATAAGCAGG 59.302 43.478 0.00 0.00 0.00 4.85
37 38 4.978083 AGCATGAAAACAGGATAAGCAG 57.022 40.909 0.00 0.00 0.00 4.24
38 39 7.093814 ACAAATAGCATGAAAACAGGATAAGCA 60.094 33.333 0.00 0.00 0.00 3.91
39 40 7.260603 ACAAATAGCATGAAAACAGGATAAGC 58.739 34.615 0.00 0.00 0.00 3.09
40 41 9.722056 GTACAAATAGCATGAAAACAGGATAAG 57.278 33.333 0.00 0.00 0.00 1.73
41 42 9.461312 AGTACAAATAGCATGAAAACAGGATAA 57.539 29.630 0.00 0.00 0.00 1.75
42 43 9.109393 GAGTACAAATAGCATGAAAACAGGATA 57.891 33.333 0.00 0.00 0.00 2.59
43 44 7.831193 AGAGTACAAATAGCATGAAAACAGGAT 59.169 33.333 0.00 0.00 0.00 3.24
44 45 7.119699 CAGAGTACAAATAGCATGAAAACAGGA 59.880 37.037 0.00 0.00 0.00 3.86
45 46 7.094634 ACAGAGTACAAATAGCATGAAAACAGG 60.095 37.037 0.00 0.00 0.00 4.00
46 47 7.747799 CACAGAGTACAAATAGCATGAAAACAG 59.252 37.037 0.00 0.00 0.00 3.16
47 48 7.584108 CACAGAGTACAAATAGCATGAAAACA 58.416 34.615 0.00 0.00 0.00 2.83
48 49 6.524586 GCACAGAGTACAAATAGCATGAAAAC 59.475 38.462 0.00 0.00 0.00 2.43
49 50 6.430925 AGCACAGAGTACAAATAGCATGAAAA 59.569 34.615 0.00 0.00 0.00 2.29
50 51 5.939883 AGCACAGAGTACAAATAGCATGAAA 59.060 36.000 0.00 0.00 0.00 2.69
51 52 5.491070 AGCACAGAGTACAAATAGCATGAA 58.509 37.500 0.00 0.00 0.00 2.57
52 53 5.089970 AGCACAGAGTACAAATAGCATGA 57.910 39.130 0.00 0.00 0.00 3.07
53 54 5.122869 ACAAGCACAGAGTACAAATAGCATG 59.877 40.000 0.00 0.00 0.00 4.06
54 55 5.248640 ACAAGCACAGAGTACAAATAGCAT 58.751 37.500 0.00 0.00 0.00 3.79
55 56 4.641396 ACAAGCACAGAGTACAAATAGCA 58.359 39.130 0.00 0.00 0.00 3.49
56 57 5.613358 AACAAGCACAGAGTACAAATAGC 57.387 39.130 0.00 0.00 0.00 2.97
57 58 7.639039 TGAAAACAAGCACAGAGTACAAATAG 58.361 34.615 0.00 0.00 0.00 1.73
58 59 7.561021 TGAAAACAAGCACAGAGTACAAATA 57.439 32.000 0.00 0.00 0.00 1.40
59 60 6.449635 TGAAAACAAGCACAGAGTACAAAT 57.550 33.333 0.00 0.00 0.00 2.32
60 61 5.888691 TGAAAACAAGCACAGAGTACAAA 57.111 34.783 0.00 0.00 0.00 2.83
61 62 5.588246 TGATGAAAACAAGCACAGAGTACAA 59.412 36.000 0.00 0.00 0.00 2.41
62 63 5.122519 TGATGAAAACAAGCACAGAGTACA 58.877 37.500 0.00 0.00 0.00 2.90
63 64 5.673337 TGATGAAAACAAGCACAGAGTAC 57.327 39.130 0.00 0.00 0.00 2.73
64 65 5.997129 TCATGATGAAAACAAGCACAGAGTA 59.003 36.000 0.00 0.00 0.00 2.59
65 66 4.823442 TCATGATGAAAACAAGCACAGAGT 59.177 37.500 0.00 0.00 0.00 3.24
66 67 5.366829 TCATGATGAAAACAAGCACAGAG 57.633 39.130 0.00 0.00 0.00 3.35
67 68 5.474189 TCATCATGATGAAAACAAGCACAGA 59.526 36.000 31.46 7.76 44.14 3.41
68 69 5.705902 TCATCATGATGAAAACAAGCACAG 58.294 37.500 31.46 4.90 44.14 3.66
69 70 5.708877 TCATCATGATGAAAACAAGCACA 57.291 34.783 31.46 8.37 44.14 4.57
80 81 6.117488 AGCAACAACATAGTCATCATGATGA 58.883 36.000 30.27 30.27 44.83 2.92
81 82 6.260271 AGAGCAACAACATAGTCATCATGATG 59.740 38.462 26.79 26.79 40.09 3.07
82 83 6.260271 CAGAGCAACAACATAGTCATCATGAT 59.740 38.462 1.18 1.18 0.00 2.45
83 84 5.583457 CAGAGCAACAACATAGTCATCATGA 59.417 40.000 0.00 0.00 0.00 3.07
84 85 5.353400 ACAGAGCAACAACATAGTCATCATG 59.647 40.000 0.00 0.00 0.00 3.07
85 86 5.494724 ACAGAGCAACAACATAGTCATCAT 58.505 37.500 0.00 0.00 0.00 2.45
86 87 4.898320 ACAGAGCAACAACATAGTCATCA 58.102 39.130 0.00 0.00 0.00 3.07
87 88 5.869753 AACAGAGCAACAACATAGTCATC 57.130 39.130 0.00 0.00 0.00 2.92
88 89 6.183360 GCATAACAGAGCAACAACATAGTCAT 60.183 38.462 0.00 0.00 0.00 3.06
89 90 5.122239 GCATAACAGAGCAACAACATAGTCA 59.878 40.000 0.00 0.00 0.00 3.41
90 91 5.352569 AGCATAACAGAGCAACAACATAGTC 59.647 40.000 0.00 0.00 0.00 2.59
91 92 5.248640 AGCATAACAGAGCAACAACATAGT 58.751 37.500 0.00 0.00 0.00 2.12
92 93 5.808042 AGCATAACAGAGCAACAACATAG 57.192 39.130 0.00 0.00 0.00 2.23
93 94 7.864108 ATAAGCATAACAGAGCAACAACATA 57.136 32.000 0.00 0.00 0.00 2.29
94 95 6.764308 ATAAGCATAACAGAGCAACAACAT 57.236 33.333 0.00 0.00 0.00 2.71
95 96 6.093495 GGTATAAGCATAACAGAGCAACAACA 59.907 38.462 0.00 0.00 0.00 3.33
96 97 6.316390 AGGTATAAGCATAACAGAGCAACAAC 59.684 38.462 0.00 0.00 0.00 3.32
97 98 6.316140 CAGGTATAAGCATAACAGAGCAACAA 59.684 38.462 0.00 0.00 0.00 2.83
98 99 5.817296 CAGGTATAAGCATAACAGAGCAACA 59.183 40.000 0.00 0.00 0.00 3.33
99 100 6.049149 TCAGGTATAAGCATAACAGAGCAAC 58.951 40.000 0.00 0.00 0.00 4.17
100 101 6.127054 ACTCAGGTATAAGCATAACAGAGCAA 60.127 38.462 2.53 0.00 40.09 3.91
101 102 5.363868 ACTCAGGTATAAGCATAACAGAGCA 59.636 40.000 2.53 0.00 40.09 4.26
102 103 5.848406 ACTCAGGTATAAGCATAACAGAGC 58.152 41.667 2.53 0.00 40.09 4.09
103 104 8.172352 AGTACTCAGGTATAAGCATAACAGAG 57.828 38.462 0.00 1.38 41.45 3.35
104 105 8.534954 AAGTACTCAGGTATAAGCATAACAGA 57.465 34.615 0.00 0.00 0.00 3.41
109 110 8.737175 CGGAATAAGTACTCAGGTATAAGCATA 58.263 37.037 0.00 0.00 0.00 3.14
110 111 7.603651 CGGAATAAGTACTCAGGTATAAGCAT 58.396 38.462 0.00 0.00 0.00 3.79
111 112 6.516194 GCGGAATAAGTACTCAGGTATAAGCA 60.516 42.308 0.00 0.00 0.00 3.91
112 113 5.862860 GCGGAATAAGTACTCAGGTATAAGC 59.137 44.000 0.00 0.00 0.00 3.09
113 114 7.085116 CAGCGGAATAAGTACTCAGGTATAAG 58.915 42.308 0.00 0.00 0.00 1.73
114 115 6.516194 GCAGCGGAATAAGTACTCAGGTATAA 60.516 42.308 0.00 0.00 0.00 0.98
115 116 5.048224 GCAGCGGAATAAGTACTCAGGTATA 60.048 44.000 0.00 0.00 0.00 1.47
116 117 4.262079 GCAGCGGAATAAGTACTCAGGTAT 60.262 45.833 0.00 0.00 0.00 2.73
117 118 3.067742 GCAGCGGAATAAGTACTCAGGTA 59.932 47.826 0.00 0.00 0.00 3.08
118 119 2.159085 GCAGCGGAATAAGTACTCAGGT 60.159 50.000 0.00 0.00 0.00 4.00
119 120 2.101582 AGCAGCGGAATAAGTACTCAGG 59.898 50.000 0.00 0.00 0.00 3.86
120 121 3.444703 AGCAGCGGAATAAGTACTCAG 57.555 47.619 0.00 0.00 0.00 3.35
121 122 5.163447 ACAATAGCAGCGGAATAAGTACTCA 60.163 40.000 0.00 0.00 0.00 3.41
122 123 5.175856 CACAATAGCAGCGGAATAAGTACTC 59.824 44.000 0.00 0.00 0.00 2.59
123 124 5.050490 CACAATAGCAGCGGAATAAGTACT 58.950 41.667 0.00 0.00 0.00 2.73
124 125 4.809426 ACACAATAGCAGCGGAATAAGTAC 59.191 41.667 0.00 0.00 0.00 2.73
125 126 5.018539 ACACAATAGCAGCGGAATAAGTA 57.981 39.130 0.00 0.00 0.00 2.24
126 127 3.871594 GACACAATAGCAGCGGAATAAGT 59.128 43.478 0.00 0.00 0.00 2.24
127 128 3.060272 CGACACAATAGCAGCGGAATAAG 60.060 47.826 0.00 0.00 0.00 1.73
128 129 2.863740 CGACACAATAGCAGCGGAATAA 59.136 45.455 0.00 0.00 0.00 1.40
129 130 2.159156 ACGACACAATAGCAGCGGAATA 60.159 45.455 0.00 0.00 0.00 1.75
130 131 1.290203 CGACACAATAGCAGCGGAAT 58.710 50.000 0.00 0.00 0.00 3.01
131 132 0.037697 ACGACACAATAGCAGCGGAA 60.038 50.000 0.00 0.00 0.00 4.30
132 133 0.037697 AACGACACAATAGCAGCGGA 60.038 50.000 0.00 0.00 0.00 5.54
133 134 1.323534 GTAACGACACAATAGCAGCGG 59.676 52.381 0.00 0.00 0.00 5.52
134 135 2.259618 AGTAACGACACAATAGCAGCG 58.740 47.619 0.00 0.00 0.00 5.18
135 136 4.267928 CCTAAGTAACGACACAATAGCAGC 59.732 45.833 0.00 0.00 0.00 5.25
136 137 5.647589 TCCTAAGTAACGACACAATAGCAG 58.352 41.667 0.00 0.00 0.00 4.24
137 138 5.648178 TCCTAAGTAACGACACAATAGCA 57.352 39.130 0.00 0.00 0.00 3.49
138 139 7.535489 AATTCCTAAGTAACGACACAATAGC 57.465 36.000 0.00 0.00 0.00 2.97
139 140 9.367444 AGAAATTCCTAAGTAACGACACAATAG 57.633 33.333 0.00 0.00 0.00 1.73
140 141 9.715121 AAGAAATTCCTAAGTAACGACACAATA 57.285 29.630 0.00 0.00 0.00 1.90
141 142 8.617290 AAGAAATTCCTAAGTAACGACACAAT 57.383 30.769 0.00 0.00 0.00 2.71
142 143 7.711772 TGAAGAAATTCCTAAGTAACGACACAA 59.288 33.333 0.00 0.00 0.00 3.33
143 144 7.170320 GTGAAGAAATTCCTAAGTAACGACACA 59.830 37.037 0.00 0.00 0.00 3.72
144 145 7.384387 AGTGAAGAAATTCCTAAGTAACGACAC 59.616 37.037 0.00 0.00 0.00 3.67
145 146 7.439381 AGTGAAGAAATTCCTAAGTAACGACA 58.561 34.615 0.00 0.00 0.00 4.35
146 147 7.886405 AGTGAAGAAATTCCTAAGTAACGAC 57.114 36.000 0.00 0.00 0.00 4.34
147 148 9.635520 CTAAGTGAAGAAATTCCTAAGTAACGA 57.364 33.333 0.00 0.00 0.00 3.85
148 149 9.635520 TCTAAGTGAAGAAATTCCTAAGTAACG 57.364 33.333 0.00 0.00 0.00 3.18
177 178 9.887406 GATTTTTACAAATTCGTCACTTAGGAA 57.113 29.630 0.00 0.00 36.47 3.36
178 179 8.225107 CGATTTTTACAAATTCGTCACTTAGGA 58.775 33.333 5.69 0.00 32.35 2.94
179 180 7.007099 GCGATTTTTACAAATTCGTCACTTAGG 59.993 37.037 12.51 0.00 32.35 2.69
180 181 7.007099 GGCGATTTTTACAAATTCGTCACTTAG 59.993 37.037 11.29 0.00 32.35 2.18
181 182 6.797995 GGCGATTTTTACAAATTCGTCACTTA 59.202 34.615 11.29 0.00 32.35 2.24
182 183 5.627780 GGCGATTTTTACAAATTCGTCACTT 59.372 36.000 11.29 0.00 32.35 3.16
183 184 5.048991 AGGCGATTTTTACAAATTCGTCACT 60.049 36.000 16.11 9.50 33.58 3.41
184 185 5.151389 AGGCGATTTTTACAAATTCGTCAC 58.849 37.500 16.11 8.04 33.58 3.67
185 186 5.365403 AGGCGATTTTTACAAATTCGTCA 57.635 34.783 16.11 0.00 33.58 4.35
186 187 7.694784 TGAATAGGCGATTTTTACAAATTCGTC 59.305 33.333 9.10 9.10 32.35 4.20
187 188 7.483691 GTGAATAGGCGATTTTTACAAATTCGT 59.516 33.333 12.51 1.06 32.35 3.85
188 189 7.044314 GGTGAATAGGCGATTTTTACAAATTCG 60.044 37.037 8.46 8.46 32.35 3.34
189 190 7.222031 GGGTGAATAGGCGATTTTTACAAATTC 59.778 37.037 0.00 0.00 32.35 2.17
190 191 7.039270 GGGTGAATAGGCGATTTTTACAAATT 58.961 34.615 0.00 0.00 32.35 1.82
191 192 6.406512 GGGGTGAATAGGCGATTTTTACAAAT 60.407 38.462 0.00 0.00 35.12 2.32
192 193 5.105675 GGGGTGAATAGGCGATTTTTACAAA 60.106 40.000 0.00 0.00 0.00 2.83
193 194 4.399934 GGGGTGAATAGGCGATTTTTACAA 59.600 41.667 0.00 0.00 0.00 2.41
194 195 3.949113 GGGGTGAATAGGCGATTTTTACA 59.051 43.478 0.00 0.00 0.00 2.41
195 196 3.317149 GGGGGTGAATAGGCGATTTTTAC 59.683 47.826 0.00 0.00 0.00 2.01
196 197 3.558033 GGGGGTGAATAGGCGATTTTTA 58.442 45.455 0.00 0.00 0.00 1.52
197 198 2.384828 GGGGGTGAATAGGCGATTTTT 58.615 47.619 0.00 0.00 0.00 1.94
198 199 2.067365 GGGGGTGAATAGGCGATTTT 57.933 50.000 0.00 0.00 0.00 1.82
199 200 3.821306 GGGGGTGAATAGGCGATTT 57.179 52.632 0.00 0.00 0.00 2.17
214 215 3.576982 TGCGTTATATTGACTAGAGGGGG 59.423 47.826 0.00 0.00 0.00 5.40
215 216 4.281182 AGTGCGTTATATTGACTAGAGGGG 59.719 45.833 0.00 0.00 0.00 4.79
216 217 5.455056 AGTGCGTTATATTGACTAGAGGG 57.545 43.478 0.00 0.00 0.00 4.30
217 218 6.978659 TGAAAGTGCGTTATATTGACTAGAGG 59.021 38.462 0.00 0.00 0.00 3.69
218 219 7.987268 TGAAAGTGCGTTATATTGACTAGAG 57.013 36.000 0.00 0.00 0.00 2.43
219 220 7.987268 CTGAAAGTGCGTTATATTGACTAGA 57.013 36.000 0.00 0.00 0.00 2.43
236 237 6.768861 ACTCGATAGTATAGCTCACTGAAAGT 59.231 38.462 10.42 6.49 41.18 2.66
237 238 7.197071 ACTCGATAGTATAGCTCACTGAAAG 57.803 40.000 10.42 6.01 34.83 2.62
238 239 7.569639 AACTCGATAGTATAGCTCACTGAAA 57.430 36.000 10.42 0.00 33.75 2.69
239 240 8.148999 TCTAACTCGATAGTATAGCTCACTGAA 58.851 37.037 10.42 0.00 33.75 3.02
240 241 7.668492 TCTAACTCGATAGTATAGCTCACTGA 58.332 38.462 10.42 0.53 33.75 3.41
241 242 7.892778 TCTAACTCGATAGTATAGCTCACTG 57.107 40.000 10.42 0.00 33.75 3.66
299 300 6.016860 TCGAAATTCCATGCTGAATTGATAGG 60.017 38.462 9.76 0.00 42.58 2.57
389 392 4.042174 ACGGAGGGAGTAATAATTTGGGA 58.958 43.478 0.00 0.00 0.00 4.37
480 483 3.442977 AGTAGGAACGGTAAGCAGTACTG 59.557 47.826 18.93 18.93 43.77 2.74
513 516 5.479724 TCCAGCATTCCATTAACATTTCACA 59.520 36.000 0.00 0.00 0.00 3.58
529 532 8.479689 TGATATCAATTTTGTTCATCCAGCATT 58.520 29.630 1.98 0.00 0.00 3.56
561 565 1.404583 CCTGCCTTTAGTGCATTTGGC 60.405 52.381 11.65 11.65 45.13 4.52
573 577 1.699752 CCTTCCATCCCCTGCCTTT 59.300 57.895 0.00 0.00 0.00 3.11
603 607 2.234143 GCAGGTTTGAGCCTCTCTTTT 58.766 47.619 0.00 0.00 36.58 2.27
653 657 3.188460 GCTCAATGCCTTGTCTCGTTTTA 59.812 43.478 1.49 0.00 33.87 1.52
747 753 3.062099 GGTGTACATATGAGTGTTGCGTG 59.938 47.826 10.38 0.00 33.62 5.34
780 793 3.592059 GCACCATGCAAGATTGTTGATT 58.408 40.909 0.00 0.00 44.26 2.57
800 815 4.856487 TGTTTAAATGCTGTTAGCGAATGC 59.144 37.500 0.00 1.74 46.26 3.56
801 816 6.582295 ACTTGTTTAAATGCTGTTAGCGAATG 59.418 34.615 0.00 0.00 46.26 2.67
813 828 7.167468 CACACTGGACTAAACTTGTTTAAATGC 59.833 37.037 7.28 5.13 0.00 3.56
1025 1052 6.092122 CAGAAATCGTTTAGATACACAGGCAA 59.908 38.462 0.00 0.00 38.98 4.52
1093 1120 2.260869 CGCCAGTCAACCCAAGTGG 61.261 63.158 0.00 0.00 39.76 4.00
1252 1279 0.694771 AGAGCAATTCTGAGCCACCA 59.305 50.000 0.00 0.00 33.93 4.17
1327 1354 5.285651 TGAAACCGAACATGGAAAACAATC 58.714 37.500 0.00 0.00 0.00 2.67
1329 1356 4.720649 TGAAACCGAACATGGAAAACAA 57.279 36.364 0.00 0.00 0.00 2.83
1349 1570 1.623081 CGCAGCTTGCTTGCCAAATG 61.623 55.000 6.58 0.00 42.25 2.32
1355 1576 1.441682 GAACTCGCAGCTTGCTTGC 60.442 57.895 6.58 0.04 42.25 4.01
1357 1578 0.671781 ATCGAACTCGCAGCTTGCTT 60.672 50.000 0.00 0.00 42.25 3.91
1468 1709 4.042062 CCATAATCCCTCCTCAGTAATGCA 59.958 45.833 0.00 0.00 0.00 3.96
1523 1764 9.412460 TCTCATTGCATAAAAATATCTCCAACT 57.588 29.630 0.00 0.00 0.00 3.16
1569 1810 8.850156 AGAAAATTAAGTTTCTGCACTGTACAT 58.150 29.630 25.47 2.10 44.35 2.29
1576 1817 9.899226 AACTATGAGAAAATTAAGTTTCTGCAC 57.101 29.630 29.66 18.19 45.67 4.57
1593 1834 9.778741 ATCTTTTGACAACTTGTAACTATGAGA 57.221 29.630 0.00 0.00 0.00 3.27
1677 1918 6.969043 AGAATCTCCGATATAGATCTCTGGT 58.031 40.000 0.00 0.00 32.48 4.00
1758 1999 0.613260 ATGGAAGCTTGGCACGACTA 59.387 50.000 2.10 0.00 0.00 2.59
1816 2057 4.628963 ACCCAAAACGTACCTCACTATT 57.371 40.909 0.00 0.00 0.00 1.73
1819 2060 3.286329 AAACCCAAAACGTACCTCACT 57.714 42.857 0.00 0.00 0.00 3.41
1828 2069 6.920758 TCTGATTGAAATGTAAACCCAAAACG 59.079 34.615 0.00 0.00 0.00 3.60
1916 2158 7.873719 TCACATTTTGAAGAACAAAGTCCTA 57.126 32.000 0.00 0.00 46.93 2.94
1917 2159 6.773976 TCACATTTTGAAGAACAAAGTCCT 57.226 33.333 0.00 0.00 46.93 3.85
1933 2175 4.586001 AGAAGCATTGGAGTGTTCACATTT 59.414 37.500 5.74 0.00 0.00 2.32
1956 2198 0.687354 GAGGTGGAGGAGCTTGTCAA 59.313 55.000 0.00 0.00 30.42 3.18
2010 2252 2.567615 GTGTCATAGACAGGGGAACAGT 59.432 50.000 0.00 0.00 43.57 3.55
2037 2279 4.342359 AGCATCAAGAAAAGAAGCCAGAT 58.658 39.130 0.00 0.00 30.52 2.90
2276 2558 1.202758 CCCCCTTAAGTATGCATCGCA 60.203 52.381 0.19 0.00 44.86 5.10
2288 2570 2.712627 GGTATCCCGATTTCCCCCTTAA 59.287 50.000 0.00 0.00 0.00 1.85
2304 2586 0.249911 GAGGTGGTCATGCCGGTATC 60.250 60.000 0.34 0.00 41.21 2.24
2310 2592 1.586154 CCGTTTGAGGTGGTCATGCC 61.586 60.000 0.00 0.00 34.17 4.40
2490 2772 3.270027 CTCATCGAGCAACATTTACCCA 58.730 45.455 0.00 0.00 0.00 4.51
2503 2785 2.564771 AGAGCTCTCTCACTCATCGAG 58.435 52.381 11.45 0.00 41.81 4.04
2505 2787 2.682352 TCAAGAGCTCTCTCACTCATCG 59.318 50.000 18.55 0.00 41.81 3.84
2530 2814 1.472376 GCCGCAACATCTCTCTTAGCT 60.472 52.381 0.00 0.00 0.00 3.32
2536 2820 2.806856 CGCAGCCGCAACATCTCTC 61.807 63.158 0.00 0.00 38.40 3.20
2541 2825 1.811266 CTACTCGCAGCCGCAACAT 60.811 57.895 0.00 0.00 38.40 2.71
2547 2831 1.266989 TGATGTATCTACTCGCAGCCG 59.733 52.381 0.00 0.00 0.00 5.52
2576 2860 7.661040 ACCTCAAATTTAACAGTTGATGGAAG 58.339 34.615 0.00 0.00 31.21 3.46
2591 2875 2.529632 GGGCTCAAGGACCTCAAATTT 58.470 47.619 0.00 0.00 40.87 1.82
2660 2944 5.600898 ACTGGCCCAAACTTAAATGTTAACT 59.399 36.000 7.22 0.00 0.00 2.24
2664 2948 3.070878 CCACTGGCCCAAACTTAAATGTT 59.929 43.478 0.00 0.00 0.00 2.71
2665 2949 2.632512 CCACTGGCCCAAACTTAAATGT 59.367 45.455 0.00 0.00 0.00 2.71
2666 2950 2.632512 ACCACTGGCCCAAACTTAAATG 59.367 45.455 0.00 0.00 0.00 2.32
2667 2951 2.897326 GACCACTGGCCCAAACTTAAAT 59.103 45.455 0.00 0.00 0.00 1.40
2670 2954 0.111639 GGACCACTGGCCCAAACTTA 59.888 55.000 0.00 0.00 0.00 2.24
2692 2982 3.977134 ATATCTGATGAGCCGCTTGAT 57.023 42.857 0.00 0.00 0.00 2.57
2735 3025 6.273730 TCTGACTTGAGGGTTAAAGGGAATTA 59.726 38.462 0.00 0.00 0.00 1.40
2741 3031 4.216472 GCTTTCTGACTTGAGGGTTAAAGG 59.784 45.833 0.00 0.00 0.00 3.11
2758 3048 0.106015 ACCAACCAGCCAAGCTTTCT 60.106 50.000 0.00 0.00 36.40 2.52
2790 3080 3.087906 AGGGTCGGGTGTATGGCC 61.088 66.667 0.00 0.00 0.00 5.36
2801 3091 5.509716 AAAACTAAAACTTTGGAGGGTCG 57.490 39.130 0.00 0.00 0.00 4.79
2913 3203 6.919662 GTGATATGGCAATGAAGTTGGTATTG 59.080 38.462 0.00 0.00 38.29 1.90
2921 3211 4.603131 ACCTTGTGATATGGCAATGAAGT 58.397 39.130 0.00 0.00 0.00 3.01
2966 3256 6.405842 CCATATGGCATCAAGATCATCAATGG 60.406 42.308 9.29 3.05 0.00 3.16
3047 3337 1.533731 AGTACGAATTTGCACAACGGG 59.466 47.619 0.00 0.00 0.00 5.28
3065 3355 1.149174 CTGCGCATAATCCCCCAGT 59.851 57.895 12.24 0.00 0.00 4.00
3106 3396 8.492673 TCTCAACTATAAATTGGACATGTGAC 57.507 34.615 1.15 0.00 0.00 3.67
3154 3444 5.966742 AAAATCACTTAACCCTCTCAAGC 57.033 39.130 0.00 0.00 0.00 4.01
3201 3495 6.927936 CCAGTACATATGATCTCTGGTTTCAG 59.072 42.308 10.38 0.00 42.21 3.02
3206 3500 4.487804 AGCCAGTACATATGATCTCTGGT 58.512 43.478 24.86 16.44 42.77 4.00
3207 3501 6.788598 ATAGCCAGTACATATGATCTCTGG 57.211 41.667 22.57 22.57 43.41 3.86
3218 3512 7.612065 TGAGGTTGTAATATAGCCAGTACAT 57.388 36.000 0.00 0.00 0.00 2.29
3330 3624 1.071471 CCACCCGGATGTATGAGGC 59.929 63.158 0.73 0.00 0.00 4.70
3357 3651 8.184192 GTCAAAATTTTATGATCGGTCAGTGAT 58.816 33.333 3.97 0.00 37.87 3.06
3361 3655 6.851609 TGGTCAAAATTTTATGATCGGTCAG 58.148 36.000 3.97 0.00 37.87 3.51
3373 3667 2.439135 AGCCTGCCTTGGTCAAAATTTT 59.561 40.909 0.00 0.00 0.00 1.82
3380 3674 2.156098 AAGGAGCCTGCCTTGGTCA 61.156 57.895 2.61 0.00 46.25 4.02
3390 3684 0.903236 GAGACCCGTTTAAGGAGCCT 59.097 55.000 0.00 0.00 0.00 4.58
3423 3717 0.680061 GGATATGAGGGGTGTCGGTC 59.320 60.000 0.00 0.00 0.00 4.79
3428 3722 1.062488 GGGCTGGATATGAGGGGTGT 61.062 60.000 0.00 0.00 0.00 4.16
3483 3778 1.340248 GAGTCAAACTGTCAGGTCCGA 59.660 52.381 4.53 0.00 0.00 4.55
3485 3780 1.416401 TGGAGTCAAACTGTCAGGTCC 59.584 52.381 4.53 0.00 0.00 4.46
3487 3782 2.289072 CGATGGAGTCAAACTGTCAGGT 60.289 50.000 4.53 0.00 0.00 4.00
3489 3784 1.728971 GCGATGGAGTCAAACTGTCAG 59.271 52.381 0.00 0.00 0.00 3.51
3490 3785 1.069978 TGCGATGGAGTCAAACTGTCA 59.930 47.619 0.00 0.00 0.00 3.58
3531 3835 1.676529 CAAATGGATCCAGCAGCTCTG 59.323 52.381 21.33 5.47 42.49 3.35
3532 3836 2.022754 GCAAATGGATCCAGCAGCTCT 61.023 52.381 21.33 0.00 0.00 4.09
3533 3837 0.384669 GCAAATGGATCCAGCAGCTC 59.615 55.000 21.33 3.34 0.00 4.09
3534 3838 0.033405 AGCAAATGGATCCAGCAGCT 60.033 50.000 24.13 24.13 0.00 4.24
3535 3839 0.102481 CAGCAAATGGATCCAGCAGC 59.898 55.000 21.33 21.25 0.00 5.25
3536 3840 0.102481 GCAGCAAATGGATCCAGCAG 59.898 55.000 21.33 15.55 0.00 4.24
3537 3841 1.324740 GGCAGCAAATGGATCCAGCA 61.325 55.000 21.33 0.00 0.00 4.41
3538 3842 1.041447 AGGCAGCAAATGGATCCAGC 61.041 55.000 21.33 17.85 0.00 4.85
3539 3843 1.030457 GAGGCAGCAAATGGATCCAG 58.970 55.000 21.33 7.89 0.00 3.86
3554 3859 1.119684 GGAGGAAGAAGAGAGGAGGC 58.880 60.000 0.00 0.00 0.00 4.70
3616 3921 1.731720 CAGAGGCTAGGAACAGTTGC 58.268 55.000 0.00 0.00 0.00 4.17
3619 3924 0.610687 GTGCAGAGGCTAGGAACAGT 59.389 55.000 0.00 0.00 41.91 3.55


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.