Multiple sequence alignment - TraesCS2B01G439500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G439500 chr2B 100.000 4247 0 0 1 4247 631444424 631440178 0.000000e+00 7843
1 TraesCS2B01G439500 chr2A 94.081 2855 109 20 1401 4241 676269276 676266468 0.000000e+00 4281
2 TraesCS2B01G439500 chr2A 87.620 1042 70 24 413 1417 676271214 676270195 0.000000e+00 1155
3 TraesCS2B01G439500 chr2D 96.057 2232 82 1 1869 4100 531678197 531675972 0.000000e+00 3629
4 TraesCS2B01G439500 chr2D 86.368 1137 78 33 727 1839 531679279 531678196 0.000000e+00 1170
5 TraesCS2B01G439500 chr2D 93.711 159 8 1 514 670 531679443 531679285 1.970000e-58 237
6 TraesCS2B01G439500 chr2D 90.066 151 5 5 4098 4247 531675859 531675718 2.020000e-43 187
7 TraesCS2B01G439500 chr5D 93.012 415 29 0 1 415 545818475 545818889 1.310000e-169 606
8 TraesCS2B01G439500 chr5D 87.470 415 51 1 2 415 538557537 538557951 1.070000e-130 477
9 TraesCS2B01G439500 chr6D 92.788 416 29 1 1 415 88679245 88679660 6.080000e-168 601
10 TraesCS2B01G439500 chr6D 86.988 415 54 0 1 415 2446763 2447177 6.430000e-128 468
11 TraesCS2B01G439500 chr4D 92.289 415 32 0 1 415 428112071 428111657 1.320000e-164 590
12 TraesCS2B01G439500 chr5A 85.577 416 56 4 2 415 400063634 400063221 2.350000e-117 433


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G439500 chr2B 631440178 631444424 4246 True 7843.00 7843 100.0000 1 4247 1 chr2B.!!$R1 4246
1 TraesCS2B01G439500 chr2A 676266468 676271214 4746 True 2718.00 4281 90.8505 413 4241 2 chr2A.!!$R1 3828
2 TraesCS2B01G439500 chr2D 531675718 531679443 3725 True 1305.75 3629 91.5505 514 4247 4 chr2D.!!$R1 3733

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
188 189 0.035458 GCCGAGCTGCCCATATAGTT 59.965 55.0 0.00 0.0 0.00 2.24 F
202 203 0.182775 ATAGTTTCCCCACGCATCCC 59.817 55.0 0.00 0.0 0.00 3.85 F
232 233 0.249405 CGCTGCTGATCCTCCTCTTC 60.249 60.0 0.00 0.0 0.00 2.87 F
530 547 0.249955 AAATTGCAGCCCATTTCCCG 59.750 50.0 0.00 0.0 0.00 5.14 F
830 853 0.387929 CGCCTCGAGCTTACCCAATA 59.612 55.0 6.99 0.0 40.39 1.90 F
2189 3182 0.995024 AGCTTGTCCCTGTTGCCTAT 59.005 50.0 0.00 0.0 0.00 2.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1849 2842 0.031857 CCGGTCACAATGCTTGCAAA 59.968 50.000 0.00 0.0 0.00 3.68 R
1852 2845 0.031994 AAACCGGTCACAATGCTTGC 59.968 50.000 8.04 0.0 0.00 4.01 R
2102 3095 1.738350 CTCATCTGTGCAAGCCTCTTG 59.262 52.381 0.00 2.4 0.00 3.02 R
2257 3250 2.552599 TCGTAATCACCTGCAACCAA 57.447 45.000 0.00 0.0 0.00 3.67 R
2661 3657 0.464452 CCCGTCTCCTTGTGGGATAC 59.536 60.000 0.00 0.0 44.88 2.24 R
3476 4472 1.000163 GAGCGAAGGCAGGATATTCGA 60.000 52.381 10.42 0.0 46.57 3.71 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 2.202866 GATCGCTCCAGAAGTCCCA 58.797 57.895 0.00 0.00 0.00 4.37
19 20 0.755686 GATCGCTCCAGAAGTCCCAT 59.244 55.000 0.00 0.00 0.00 4.00
20 21 0.467384 ATCGCTCCAGAAGTCCCATG 59.533 55.000 0.00 0.00 0.00 3.66
21 22 0.904865 TCGCTCCAGAAGTCCCATGT 60.905 55.000 0.00 0.00 0.00 3.21
22 23 0.742281 CGCTCCAGAAGTCCCATGTG 60.742 60.000 0.00 0.00 0.00 3.21
23 24 0.615331 GCTCCAGAAGTCCCATGTGA 59.385 55.000 0.00 0.00 0.00 3.58
24 25 1.211457 GCTCCAGAAGTCCCATGTGAT 59.789 52.381 0.00 0.00 0.00 3.06
25 26 2.744494 GCTCCAGAAGTCCCATGTGATC 60.744 54.545 0.00 0.00 0.00 2.92
26 27 2.770802 CTCCAGAAGTCCCATGTGATCT 59.229 50.000 0.00 0.00 0.00 2.75
27 28 2.768527 TCCAGAAGTCCCATGTGATCTC 59.231 50.000 0.00 0.00 0.00 2.75
28 29 2.158842 CCAGAAGTCCCATGTGATCTCC 60.159 54.545 0.00 0.00 0.00 3.71
29 30 2.770802 CAGAAGTCCCATGTGATCTCCT 59.229 50.000 0.00 0.00 0.00 3.69
30 31 2.770802 AGAAGTCCCATGTGATCTCCTG 59.229 50.000 0.00 0.00 0.00 3.86
31 32 2.260639 AGTCCCATGTGATCTCCTGT 57.739 50.000 0.00 0.00 0.00 4.00
32 33 2.555664 AGTCCCATGTGATCTCCTGTT 58.444 47.619 0.00 0.00 0.00 3.16
33 34 2.238144 AGTCCCATGTGATCTCCTGTTG 59.762 50.000 0.00 0.00 0.00 3.33
34 35 2.237143 GTCCCATGTGATCTCCTGTTGA 59.763 50.000 0.00 0.00 0.00 3.18
35 36 3.117745 TCCCATGTGATCTCCTGTTGAT 58.882 45.455 0.00 0.00 0.00 2.57
36 37 4.101585 GTCCCATGTGATCTCCTGTTGATA 59.898 45.833 0.00 0.00 0.00 2.15
37 38 4.909695 TCCCATGTGATCTCCTGTTGATAT 59.090 41.667 0.00 0.00 0.00 1.63
38 39 5.012458 TCCCATGTGATCTCCTGTTGATATC 59.988 44.000 0.00 0.00 0.00 1.63
39 40 5.012871 CCCATGTGATCTCCTGTTGATATCT 59.987 44.000 3.98 0.00 30.07 1.98
40 41 5.932883 CCATGTGATCTCCTGTTGATATCTG 59.067 44.000 3.98 0.00 30.07 2.90
41 42 6.239515 CCATGTGATCTCCTGTTGATATCTGA 60.240 42.308 3.98 0.00 30.07 3.27
42 43 6.990908 TGTGATCTCCTGTTGATATCTGAT 57.009 37.500 3.98 0.00 30.07 2.90
43 44 8.529476 CATGTGATCTCCTGTTGATATCTGATA 58.471 37.037 3.98 0.00 30.07 2.15
44 45 7.890515 TGTGATCTCCTGTTGATATCTGATAC 58.109 38.462 3.98 0.00 30.07 2.24
45 46 7.506938 TGTGATCTCCTGTTGATATCTGATACA 59.493 37.037 3.98 2.93 30.07 2.29
46 47 8.363390 GTGATCTCCTGTTGATATCTGATACAA 58.637 37.037 3.98 4.44 30.07 2.41
47 48 8.363390 TGATCTCCTGTTGATATCTGATACAAC 58.637 37.037 22.33 22.33 41.64 3.32
48 49 7.904558 TCTCCTGTTGATATCTGATACAACT 57.095 36.000 25.57 6.49 41.76 3.16
49 50 8.311395 TCTCCTGTTGATATCTGATACAACTT 57.689 34.615 25.57 6.22 41.76 2.66
50 51 8.200120 TCTCCTGTTGATATCTGATACAACTTG 58.800 37.037 25.57 20.95 41.76 3.16
51 52 7.275183 TCCTGTTGATATCTGATACAACTTGG 58.725 38.462 25.57 24.88 41.76 3.61
52 53 6.017605 CCTGTTGATATCTGATACAACTTGGC 60.018 42.308 25.57 12.52 41.76 4.52
53 54 6.653020 TGTTGATATCTGATACAACTTGGCT 58.347 36.000 25.57 4.07 41.76 4.75
54 55 6.539826 TGTTGATATCTGATACAACTTGGCTG 59.460 38.462 25.57 0.00 41.76 4.85
55 56 5.059161 TGATATCTGATACAACTTGGCTGC 58.941 41.667 3.98 0.00 0.00 5.25
56 57 2.857186 TCTGATACAACTTGGCTGCA 57.143 45.000 0.50 0.00 0.00 4.41
57 58 3.138884 TCTGATACAACTTGGCTGCAA 57.861 42.857 0.50 0.00 0.00 4.08
58 59 3.689347 TCTGATACAACTTGGCTGCAAT 58.311 40.909 0.50 0.00 0.00 3.56
59 60 3.691118 TCTGATACAACTTGGCTGCAATC 59.309 43.478 0.50 0.00 0.00 2.67
60 61 2.754552 TGATACAACTTGGCTGCAATCC 59.245 45.455 0.50 0.00 0.00 3.01
61 62 1.164411 TACAACTTGGCTGCAATCCG 58.836 50.000 0.50 0.00 0.00 4.18
62 63 0.537143 ACAACTTGGCTGCAATCCGA 60.537 50.000 0.50 0.00 0.00 4.55
63 64 0.109597 CAACTTGGCTGCAATCCGAC 60.110 55.000 0.50 0.00 0.00 4.79
64 65 1.577328 AACTTGGCTGCAATCCGACG 61.577 55.000 0.50 0.00 0.00 5.12
65 66 3.386867 CTTGGCTGCAATCCGACGC 62.387 63.158 0.50 0.00 0.00 5.19
68 69 4.210304 GCTGCAATCCGACGCGAC 62.210 66.667 15.93 5.54 0.00 5.19
69 70 2.809174 CTGCAATCCGACGCGACA 60.809 61.111 15.93 0.00 0.00 4.35
70 71 2.356433 TGCAATCCGACGCGACAA 60.356 55.556 15.93 0.00 0.00 3.18
71 72 2.095843 GCAATCCGACGCGACAAC 59.904 61.111 15.93 0.00 0.00 3.32
72 73 2.663478 GCAATCCGACGCGACAACA 61.663 57.895 15.93 0.00 0.00 3.33
73 74 1.856688 CAATCCGACGCGACAACAA 59.143 52.632 15.93 0.00 0.00 2.83
74 75 0.233590 CAATCCGACGCGACAACAAA 59.766 50.000 15.93 0.00 0.00 2.83
75 76 0.511221 AATCCGACGCGACAACAAAG 59.489 50.000 15.93 0.00 0.00 2.77
76 77 1.897398 ATCCGACGCGACAACAAAGC 61.897 55.000 15.93 0.00 0.00 3.51
77 78 2.594962 CCGACGCGACAACAAAGCT 61.595 57.895 15.93 0.00 0.00 3.74
78 79 1.154836 CGACGCGACAACAAAGCTC 60.155 57.895 15.93 0.00 0.00 4.09
79 80 1.548973 CGACGCGACAACAAAGCTCT 61.549 55.000 15.93 0.00 0.00 4.09
80 81 0.111089 GACGCGACAACAAAGCTCTG 60.111 55.000 15.93 0.00 0.00 3.35
81 82 1.205064 CGCGACAACAAAGCTCTGG 59.795 57.895 0.00 0.00 0.00 3.86
82 83 1.221466 CGCGACAACAAAGCTCTGGA 61.221 55.000 0.00 0.00 0.00 3.86
83 84 1.160137 GCGACAACAAAGCTCTGGAT 58.840 50.000 0.00 0.00 0.00 3.41
84 85 1.135859 GCGACAACAAAGCTCTGGATG 60.136 52.381 0.00 0.00 0.00 3.51
85 86 1.135859 CGACAACAAAGCTCTGGATGC 60.136 52.381 0.00 0.00 0.00 3.91
86 87 1.200948 GACAACAAAGCTCTGGATGCC 59.799 52.381 0.00 0.00 0.00 4.40
87 88 0.529378 CAACAAAGCTCTGGATGCCC 59.471 55.000 0.00 0.00 0.00 5.36
88 89 0.112995 AACAAAGCTCTGGATGCCCA 59.887 50.000 0.00 0.00 40.95 5.36
89 90 0.112995 ACAAAGCTCTGGATGCCCAA 59.887 50.000 0.00 0.00 42.98 4.12
90 91 1.259609 CAAAGCTCTGGATGCCCAAA 58.740 50.000 0.00 0.00 42.98 3.28
91 92 1.829222 CAAAGCTCTGGATGCCCAAAT 59.171 47.619 0.00 0.00 42.98 2.32
92 93 1.772836 AAGCTCTGGATGCCCAAATC 58.227 50.000 0.00 0.00 42.98 2.17
93 94 0.924823 AGCTCTGGATGCCCAAATCT 59.075 50.000 0.00 0.00 42.98 2.40
94 95 1.287146 AGCTCTGGATGCCCAAATCTT 59.713 47.619 0.00 0.00 42.98 2.40
95 96 1.680207 GCTCTGGATGCCCAAATCTTC 59.320 52.381 0.00 0.00 42.98 2.87
96 97 2.947243 GCTCTGGATGCCCAAATCTTCA 60.947 50.000 0.00 0.00 42.98 3.02
97 98 2.950309 CTCTGGATGCCCAAATCTTCAG 59.050 50.000 0.00 0.00 42.98 3.02
98 99 1.407979 CTGGATGCCCAAATCTTCAGC 59.592 52.381 0.00 0.00 42.98 4.26
99 100 1.272592 TGGATGCCCAAATCTTCAGCA 60.273 47.619 0.00 0.00 40.09 4.41
100 101 1.826720 GGATGCCCAAATCTTCAGCAA 59.173 47.619 0.00 0.00 36.95 3.91
101 102 2.159142 GGATGCCCAAATCTTCAGCAAG 60.159 50.000 0.00 0.00 36.95 4.01
102 103 2.291209 TGCCCAAATCTTCAGCAAGA 57.709 45.000 0.00 0.00 43.06 3.02
103 104 2.165167 TGCCCAAATCTTCAGCAAGAG 58.835 47.619 0.00 0.00 42.13 2.85
104 105 2.224843 TGCCCAAATCTTCAGCAAGAGA 60.225 45.455 0.00 0.00 42.13 3.10
105 106 2.163211 GCCCAAATCTTCAGCAAGAGAC 59.837 50.000 0.00 0.00 42.13 3.36
106 107 3.415212 CCCAAATCTTCAGCAAGAGACA 58.585 45.455 0.00 0.00 42.13 3.41
107 108 3.822735 CCCAAATCTTCAGCAAGAGACAA 59.177 43.478 0.00 0.00 42.13 3.18
108 109 4.279169 CCCAAATCTTCAGCAAGAGACAAA 59.721 41.667 0.00 0.00 42.13 2.83
109 110 5.458891 CCAAATCTTCAGCAAGAGACAAAG 58.541 41.667 0.00 0.00 42.13 2.77
110 111 4.762956 AATCTTCAGCAAGAGACAAAGC 57.237 40.909 0.00 0.00 42.13 3.51
111 112 3.482156 TCTTCAGCAAGAGACAAAGCT 57.518 42.857 0.00 0.00 33.38 3.74
112 113 3.813443 TCTTCAGCAAGAGACAAAGCTT 58.187 40.909 0.00 0.00 33.38 3.74
113 114 3.812053 TCTTCAGCAAGAGACAAAGCTTC 59.188 43.478 0.00 0.00 33.38 3.86
114 115 2.498167 TCAGCAAGAGACAAAGCTTCC 58.502 47.619 0.00 0.00 34.61 3.46
115 116 1.538950 CAGCAAGAGACAAAGCTTCCC 59.461 52.381 0.00 0.00 34.61 3.97
116 117 0.519077 GCAAGAGACAAAGCTTCCCG 59.481 55.000 0.00 0.00 0.00 5.14
117 118 1.160137 CAAGAGACAAAGCTTCCCGG 58.840 55.000 0.00 0.00 0.00 5.73
118 119 0.606673 AAGAGACAAAGCTTCCCGGC 60.607 55.000 0.00 0.00 0.00 6.13
119 120 1.302511 GAGACAAAGCTTCCCGGCA 60.303 57.895 0.00 0.00 34.17 5.69
120 121 0.678048 GAGACAAAGCTTCCCGGCAT 60.678 55.000 0.00 0.00 34.17 4.40
121 122 0.962356 AGACAAAGCTTCCCGGCATG 60.962 55.000 0.00 0.00 34.17 4.06
122 123 2.182537 CAAAGCTTCCCGGCATGC 59.817 61.111 9.90 9.90 34.17 4.06
123 124 2.283101 AAAGCTTCCCGGCATGCA 60.283 55.556 21.36 0.00 34.17 3.96
124 125 1.907807 AAAGCTTCCCGGCATGCAA 60.908 52.632 21.36 3.83 34.17 4.08
125 126 1.259840 AAAGCTTCCCGGCATGCAAT 61.260 50.000 21.36 0.00 34.17 3.56
126 127 1.259840 AAGCTTCCCGGCATGCAATT 61.260 50.000 21.36 0.00 34.17 2.32
127 128 1.519898 GCTTCCCGGCATGCAATTG 60.520 57.895 21.36 0.00 0.00 2.32
128 129 1.519898 CTTCCCGGCATGCAATTGC 60.520 57.895 23.69 23.69 42.01 3.56
135 136 3.059603 GCATGCAATTGCCTCAAGG 57.940 52.632 26.94 11.58 41.18 3.61
136 137 0.461339 GCATGCAATTGCCTCAAGGG 60.461 55.000 26.94 6.78 41.18 3.95
137 138 0.899720 CATGCAATTGCCTCAAGGGT 59.100 50.000 26.94 0.99 41.18 4.34
138 139 0.899720 ATGCAATTGCCTCAAGGGTG 59.100 50.000 26.94 0.00 41.18 4.61
139 140 1.186917 TGCAATTGCCTCAAGGGTGG 61.187 55.000 26.94 0.00 41.18 4.61
145 146 3.260100 CCTCAAGGGTGGCTGGGT 61.260 66.667 0.00 0.00 0.00 4.51
146 147 2.352805 CTCAAGGGTGGCTGGGTC 59.647 66.667 0.00 0.00 0.00 4.46
147 148 2.121963 TCAAGGGTGGCTGGGTCT 60.122 61.111 0.00 0.00 0.00 3.85
148 149 0.909610 CTCAAGGGTGGCTGGGTCTA 60.910 60.000 0.00 0.00 0.00 2.59
149 150 1.198759 TCAAGGGTGGCTGGGTCTAC 61.199 60.000 0.00 0.00 0.00 2.59
150 151 1.923909 AAGGGTGGCTGGGTCTACC 60.924 63.158 0.00 0.00 36.93 3.18
154 155 3.478780 TGGCTGGGTCTACCACAC 58.521 61.111 0.81 0.00 46.80 3.82
155 156 2.221299 TGGCTGGGTCTACCACACC 61.221 63.158 0.81 0.00 46.80 4.16
160 161 4.428845 GGTCTACCACACCCTCGA 57.571 61.111 0.00 0.00 35.64 4.04
161 162 2.897699 GGTCTACCACACCCTCGAT 58.102 57.895 0.00 0.00 35.64 3.59
162 163 2.062971 GGTCTACCACACCCTCGATA 57.937 55.000 0.00 0.00 35.64 2.92
163 164 2.381911 GGTCTACCACACCCTCGATAA 58.618 52.381 0.00 0.00 35.64 1.75
164 165 2.100418 GGTCTACCACACCCTCGATAAC 59.900 54.545 0.00 0.00 35.64 1.89
165 166 2.100418 GTCTACCACACCCTCGATAACC 59.900 54.545 0.00 0.00 0.00 2.85
166 167 2.104967 CTACCACACCCTCGATAACCA 58.895 52.381 0.00 0.00 0.00 3.67
167 168 1.354101 ACCACACCCTCGATAACCAA 58.646 50.000 0.00 0.00 0.00 3.67
168 169 1.278127 ACCACACCCTCGATAACCAAG 59.722 52.381 0.00 0.00 0.00 3.61
169 170 1.406887 CCACACCCTCGATAACCAAGG 60.407 57.143 0.00 0.00 0.00 3.61
170 171 0.252197 ACACCCTCGATAACCAAGGC 59.748 55.000 0.00 0.00 0.00 4.35
171 172 0.463833 CACCCTCGATAACCAAGGCC 60.464 60.000 0.00 0.00 0.00 5.19
172 173 1.227556 CCCTCGATAACCAAGGCCG 60.228 63.158 0.00 0.00 0.00 6.13
173 174 1.682451 CCCTCGATAACCAAGGCCGA 61.682 60.000 0.00 0.00 0.00 5.54
174 175 0.249489 CCTCGATAACCAAGGCCGAG 60.249 60.000 0.00 0.00 44.25 4.63
175 176 0.876342 CTCGATAACCAAGGCCGAGC 60.876 60.000 0.00 0.00 39.88 5.03
176 177 1.144057 CGATAACCAAGGCCGAGCT 59.856 57.895 0.00 0.00 0.00 4.09
177 178 1.154205 CGATAACCAAGGCCGAGCTG 61.154 60.000 0.00 0.00 0.00 4.24
178 179 1.440145 GATAACCAAGGCCGAGCTGC 61.440 60.000 0.00 0.00 0.00 5.25
185 186 3.068881 GGCCGAGCTGCCCATATA 58.931 61.111 3.64 0.00 46.11 0.86
186 187 1.078848 GGCCGAGCTGCCCATATAG 60.079 63.158 3.64 0.00 46.11 1.31
187 188 1.674057 GCCGAGCTGCCCATATAGT 59.326 57.895 0.00 0.00 0.00 2.12
188 189 0.035458 GCCGAGCTGCCCATATAGTT 59.965 55.000 0.00 0.00 0.00 2.24
189 190 1.543429 GCCGAGCTGCCCATATAGTTT 60.543 52.381 0.00 0.00 0.00 2.66
190 191 2.417719 CCGAGCTGCCCATATAGTTTC 58.582 52.381 0.00 0.00 0.00 2.78
191 192 2.417719 CGAGCTGCCCATATAGTTTCC 58.582 52.381 0.00 0.00 0.00 3.13
192 193 2.784347 GAGCTGCCCATATAGTTTCCC 58.216 52.381 0.00 0.00 0.00 3.97
193 194 1.425448 AGCTGCCCATATAGTTTCCCC 59.575 52.381 0.00 0.00 0.00 4.81
194 195 1.144913 GCTGCCCATATAGTTTCCCCA 59.855 52.381 0.00 0.00 0.00 4.96
195 196 2.863809 CTGCCCATATAGTTTCCCCAC 58.136 52.381 0.00 0.00 0.00 4.61
196 197 1.142060 TGCCCATATAGTTTCCCCACG 59.858 52.381 0.00 0.00 0.00 4.94
197 198 1.892209 CCCATATAGTTTCCCCACGC 58.108 55.000 0.00 0.00 0.00 5.34
198 199 1.142060 CCCATATAGTTTCCCCACGCA 59.858 52.381 0.00 0.00 0.00 5.24
199 200 2.224769 CCCATATAGTTTCCCCACGCAT 60.225 50.000 0.00 0.00 0.00 4.73
200 201 3.074412 CCATATAGTTTCCCCACGCATC 58.926 50.000 0.00 0.00 0.00 3.91
201 202 2.922740 TATAGTTTCCCCACGCATCC 57.077 50.000 0.00 0.00 0.00 3.51
202 203 0.182775 ATAGTTTCCCCACGCATCCC 59.817 55.000 0.00 0.00 0.00 3.85
203 204 0.912487 TAGTTTCCCCACGCATCCCT 60.912 55.000 0.00 0.00 0.00 4.20
204 205 2.046285 GTTTCCCCACGCATCCCTG 61.046 63.158 0.00 0.00 0.00 4.45
205 206 3.936772 TTTCCCCACGCATCCCTGC 62.937 63.158 0.00 0.00 45.31 4.85
214 215 4.054085 CATCCCTGCATACAGCCG 57.946 61.111 0.00 0.00 43.02 5.52
215 216 2.111878 ATCCCTGCATACAGCCGC 59.888 61.111 0.00 0.00 43.02 6.53
216 217 2.446848 ATCCCTGCATACAGCCGCT 61.447 57.895 0.00 0.00 43.02 5.52
217 218 2.671370 ATCCCTGCATACAGCCGCTG 62.671 60.000 19.08 19.08 43.02 5.18
218 219 3.580193 CCTGCATACAGCCGCTGC 61.580 66.667 20.56 7.84 43.02 5.25
228 229 3.859414 GCCGCTGCTGATCCTCCT 61.859 66.667 0.00 0.00 33.53 3.69
229 230 2.420890 CCGCTGCTGATCCTCCTC 59.579 66.667 0.00 0.00 0.00 3.71
230 231 2.132996 CCGCTGCTGATCCTCCTCT 61.133 63.158 0.00 0.00 0.00 3.69
231 232 1.684386 CCGCTGCTGATCCTCCTCTT 61.684 60.000 0.00 0.00 0.00 2.85
232 233 0.249405 CGCTGCTGATCCTCCTCTTC 60.249 60.000 0.00 0.00 0.00 2.87
233 234 1.122227 GCTGCTGATCCTCCTCTTCT 58.878 55.000 0.00 0.00 0.00 2.85
234 235 2.315176 GCTGCTGATCCTCCTCTTCTA 58.685 52.381 0.00 0.00 0.00 2.10
235 236 2.297033 GCTGCTGATCCTCCTCTTCTAG 59.703 54.545 0.00 0.00 0.00 2.43
236 237 3.565307 CTGCTGATCCTCCTCTTCTAGT 58.435 50.000 0.00 0.00 0.00 2.57
237 238 3.561143 TGCTGATCCTCCTCTTCTAGTC 58.439 50.000 0.00 0.00 0.00 2.59
238 239 3.053320 TGCTGATCCTCCTCTTCTAGTCA 60.053 47.826 0.00 0.00 0.00 3.41
239 240 3.957497 GCTGATCCTCCTCTTCTAGTCAA 59.043 47.826 0.00 0.00 0.00 3.18
240 241 4.588528 GCTGATCCTCCTCTTCTAGTCAAT 59.411 45.833 0.00 0.00 0.00 2.57
241 242 5.772672 GCTGATCCTCCTCTTCTAGTCAATA 59.227 44.000 0.00 0.00 0.00 1.90
242 243 6.294508 GCTGATCCTCCTCTTCTAGTCAATAC 60.295 46.154 0.00 0.00 0.00 1.89
243 244 6.916909 TGATCCTCCTCTTCTAGTCAATACT 58.083 40.000 0.00 0.00 39.91 2.12
244 245 7.001674 TGATCCTCCTCTTCTAGTCAATACTC 58.998 42.308 0.00 0.00 37.15 2.59
245 246 6.584471 TCCTCCTCTTCTAGTCAATACTCT 57.416 41.667 0.00 0.00 37.15 3.24
246 247 7.693533 TCCTCCTCTTCTAGTCAATACTCTA 57.306 40.000 0.00 0.00 37.15 2.43
247 248 7.741785 TCCTCCTCTTCTAGTCAATACTCTAG 58.258 42.308 0.00 0.00 37.15 2.43
248 249 6.430000 CCTCCTCTTCTAGTCAATACTCTAGC 59.570 46.154 0.00 0.00 37.15 3.42
249 250 6.901300 TCCTCTTCTAGTCAATACTCTAGCA 58.099 40.000 0.00 0.00 37.15 3.49
250 251 7.522542 TCCTCTTCTAGTCAATACTCTAGCAT 58.477 38.462 0.00 0.00 37.15 3.79
251 252 7.663905 TCCTCTTCTAGTCAATACTCTAGCATC 59.336 40.741 0.00 0.00 37.15 3.91
252 253 7.665559 CCTCTTCTAGTCAATACTCTAGCATCT 59.334 40.741 0.00 0.00 37.15 2.90
253 254 9.719355 CTCTTCTAGTCAATACTCTAGCATCTA 57.281 37.037 0.00 0.00 37.15 1.98
254 255 9.496873 TCTTCTAGTCAATACTCTAGCATCTAC 57.503 37.037 0.00 0.00 37.15 2.59
255 256 9.278978 CTTCTAGTCAATACTCTAGCATCTACA 57.721 37.037 0.00 0.00 37.15 2.74
256 257 9.800572 TTCTAGTCAATACTCTAGCATCTACAT 57.199 33.333 0.00 0.00 37.15 2.29
257 258 9.225436 TCTAGTCAATACTCTAGCATCTACATG 57.775 37.037 0.00 0.00 37.15 3.21
258 259 9.225436 CTAGTCAATACTCTAGCATCTACATGA 57.775 37.037 0.00 0.00 37.15 3.07
259 260 8.470657 AGTCAATACTCTAGCATCTACATGAA 57.529 34.615 0.00 0.00 30.57 2.57
260 261 9.087871 AGTCAATACTCTAGCATCTACATGAAT 57.912 33.333 0.00 0.00 30.57 2.57
261 262 9.352784 GTCAATACTCTAGCATCTACATGAATC 57.647 37.037 0.00 0.00 30.57 2.52
262 263 9.306777 TCAATACTCTAGCATCTACATGAATCT 57.693 33.333 0.00 0.00 30.57 2.40
263 264 9.926158 CAATACTCTAGCATCTACATGAATCTT 57.074 33.333 0.00 0.00 30.57 2.40
264 265 9.926158 AATACTCTAGCATCTACATGAATCTTG 57.074 33.333 0.00 0.00 30.57 3.02
265 266 6.222389 ACTCTAGCATCTACATGAATCTTGC 58.778 40.000 0.00 1.99 30.57 4.01
266 267 6.165700 TCTAGCATCTACATGAATCTTGCA 57.834 37.500 0.00 0.00 31.41 4.08
267 268 6.585416 TCTAGCATCTACATGAATCTTGCAA 58.415 36.000 0.00 0.00 31.41 4.08
268 269 7.222161 TCTAGCATCTACATGAATCTTGCAAT 58.778 34.615 0.00 0.00 31.41 3.56
269 270 6.710597 AGCATCTACATGAATCTTGCAATT 57.289 33.333 0.00 0.00 31.41 2.32
270 271 7.812690 AGCATCTACATGAATCTTGCAATTA 57.187 32.000 0.00 0.00 31.41 1.40
271 272 7.646314 AGCATCTACATGAATCTTGCAATTAC 58.354 34.615 0.00 0.00 31.41 1.89
272 273 6.860023 GCATCTACATGAATCTTGCAATTACC 59.140 38.462 0.00 0.00 30.57 2.85
273 274 6.942532 TCTACATGAATCTTGCAATTACCC 57.057 37.500 0.00 0.00 0.00 3.69
274 275 4.637483 ACATGAATCTTGCAATTACCCG 57.363 40.909 0.00 0.00 0.00 5.28
275 276 3.181487 ACATGAATCTTGCAATTACCCGC 60.181 43.478 0.00 0.00 0.00 6.13
276 277 2.722094 TGAATCTTGCAATTACCCGCT 58.278 42.857 0.00 0.00 0.00 5.52
277 278 2.423185 TGAATCTTGCAATTACCCGCTG 59.577 45.455 0.00 0.00 0.00 5.18
278 279 1.392589 ATCTTGCAATTACCCGCTGG 58.607 50.000 0.00 0.00 37.80 4.85
287 288 3.570212 ACCCGCTGGTGGCTTCTT 61.570 61.111 0.00 0.00 45.58 2.52
288 289 2.282462 CCCGCTGGTGGCTTCTTT 60.282 61.111 0.00 0.00 39.13 2.52
289 290 2.629656 CCCGCTGGTGGCTTCTTTG 61.630 63.158 0.00 0.00 39.13 2.77
290 291 2.629656 CCGCTGGTGGCTTCTTTGG 61.630 63.158 0.00 0.00 39.13 3.28
291 292 2.653115 GCTGGTGGCTTCTTTGGC 59.347 61.111 0.00 0.00 38.06 4.52
299 300 4.107051 CTTCTTTGGCCGGCGCTG 62.107 66.667 22.54 9.96 34.44 5.18
329 330 3.110178 CGACGCCGGAGTGTTTCC 61.110 66.667 18.14 0.00 43.04 3.13
330 331 2.741211 GACGCCGGAGTGTTTCCC 60.741 66.667 18.14 0.00 43.63 3.97
331 332 4.324991 ACGCCGGAGTGTTTCCCC 62.325 66.667 11.10 0.00 43.63 4.81
336 337 3.647771 GGAGTGTTTCCCCGCCCT 61.648 66.667 0.00 0.00 40.37 5.19
337 338 2.359975 GAGTGTTTCCCCGCCCTG 60.360 66.667 0.00 0.00 0.00 4.45
338 339 3.920093 GAGTGTTTCCCCGCCCTGG 62.920 68.421 0.00 0.00 37.55 4.45
339 340 3.961414 GTGTTTCCCCGCCCTGGA 61.961 66.667 0.00 0.00 42.00 3.86
340 341 3.961414 TGTTTCCCCGCCCTGGAC 61.961 66.667 0.00 0.00 42.00 4.02
341 342 4.735358 GTTTCCCCGCCCTGGACC 62.735 72.222 0.00 0.00 42.00 4.46
359 360 2.420058 CCCTGGGGTTTCAGTGTATC 57.580 55.000 4.27 0.00 33.14 2.24
360 361 1.916181 CCCTGGGGTTTCAGTGTATCT 59.084 52.381 4.27 0.00 33.14 1.98
361 362 3.112263 CCCTGGGGTTTCAGTGTATCTA 58.888 50.000 4.27 0.00 33.14 1.98
362 363 3.134804 CCCTGGGGTTTCAGTGTATCTAG 59.865 52.174 4.27 0.00 33.14 2.43
363 364 3.775316 CCTGGGGTTTCAGTGTATCTAGT 59.225 47.826 0.00 0.00 33.14 2.57
364 365 4.225267 CCTGGGGTTTCAGTGTATCTAGTT 59.775 45.833 0.00 0.00 33.14 2.24
365 366 5.416271 TGGGGTTTCAGTGTATCTAGTTC 57.584 43.478 0.00 0.00 0.00 3.01
366 367 4.841813 TGGGGTTTCAGTGTATCTAGTTCA 59.158 41.667 0.00 0.00 0.00 3.18
367 368 5.046591 TGGGGTTTCAGTGTATCTAGTTCAG 60.047 44.000 0.00 0.00 0.00 3.02
368 369 4.870991 GGGTTTCAGTGTATCTAGTTCAGC 59.129 45.833 0.00 0.00 0.00 4.26
369 370 5.479306 GGTTTCAGTGTATCTAGTTCAGCA 58.521 41.667 0.00 0.00 0.00 4.41
370 371 5.932303 GGTTTCAGTGTATCTAGTTCAGCAA 59.068 40.000 0.00 0.00 0.00 3.91
371 372 6.595716 GGTTTCAGTGTATCTAGTTCAGCAAT 59.404 38.462 0.00 0.00 0.00 3.56
372 373 7.413438 GGTTTCAGTGTATCTAGTTCAGCAATG 60.413 40.741 0.00 0.00 0.00 2.82
373 374 6.530019 TCAGTGTATCTAGTTCAGCAATGA 57.470 37.500 0.00 0.00 0.00 2.57
374 375 6.935167 TCAGTGTATCTAGTTCAGCAATGAA 58.065 36.000 0.00 0.00 29.96 2.57
375 376 6.813649 TCAGTGTATCTAGTTCAGCAATGAAC 59.186 38.462 12.12 12.12 46.11 3.18
376 377 6.036517 CAGTGTATCTAGTTCAGCAATGAACC 59.963 42.308 15.51 2.69 46.74 3.62
377 378 6.070538 AGTGTATCTAGTTCAGCAATGAACCT 60.071 38.462 15.51 7.57 46.74 3.50
378 379 7.124298 AGTGTATCTAGTTCAGCAATGAACCTA 59.876 37.037 15.51 8.17 46.74 3.08
379 380 7.764443 GTGTATCTAGTTCAGCAATGAACCTAA 59.236 37.037 15.51 4.12 46.74 2.69
380 381 7.764443 TGTATCTAGTTCAGCAATGAACCTAAC 59.236 37.037 15.51 9.06 46.74 2.34
381 382 6.109156 TCTAGTTCAGCAATGAACCTAACA 57.891 37.500 15.51 0.00 46.74 2.41
382 383 6.530120 TCTAGTTCAGCAATGAACCTAACAA 58.470 36.000 15.51 0.00 46.74 2.83
383 384 5.438761 AGTTCAGCAATGAACCTAACAAC 57.561 39.130 15.51 0.00 46.74 3.32
384 385 4.024048 AGTTCAGCAATGAACCTAACAACG 60.024 41.667 15.51 0.00 46.74 4.10
385 386 3.734463 TCAGCAATGAACCTAACAACGA 58.266 40.909 0.00 0.00 0.00 3.85
386 387 4.130857 TCAGCAATGAACCTAACAACGAA 58.869 39.130 0.00 0.00 0.00 3.85
387 388 4.213270 TCAGCAATGAACCTAACAACGAAG 59.787 41.667 0.00 0.00 0.00 3.79
388 389 3.058224 AGCAATGAACCTAACAACGAAGC 60.058 43.478 0.00 0.00 0.00 3.86
389 390 3.821841 CAATGAACCTAACAACGAAGCC 58.178 45.455 0.00 0.00 0.00 4.35
390 391 1.504359 TGAACCTAACAACGAAGCCG 58.496 50.000 0.00 0.00 42.50 5.52
403 404 3.717294 AGCCGTGGGTAGCTTGGG 61.717 66.667 0.00 0.00 35.22 4.12
404 405 4.796495 GCCGTGGGTAGCTTGGGG 62.796 72.222 0.00 0.00 0.00 4.96
405 406 4.109675 CCGTGGGTAGCTTGGGGG 62.110 72.222 0.00 0.00 0.00 5.40
406 407 4.796495 CGTGGGTAGCTTGGGGGC 62.796 72.222 0.00 0.00 0.00 5.80
407 408 3.339093 GTGGGTAGCTTGGGGGCT 61.339 66.667 0.00 0.00 45.29 5.19
408 409 3.015145 TGGGTAGCTTGGGGGCTC 61.015 66.667 0.00 0.00 42.97 4.70
409 410 2.692741 GGGTAGCTTGGGGGCTCT 60.693 66.667 0.00 0.00 42.97 4.09
410 411 2.592308 GGTAGCTTGGGGGCTCTG 59.408 66.667 0.00 0.00 42.97 3.35
411 412 1.995626 GGTAGCTTGGGGGCTCTGA 60.996 63.158 0.00 0.00 42.97 3.27
432 433 2.918712 AGTGATCTCGGGCAAATAGG 57.081 50.000 0.00 0.00 0.00 2.57
455 456 5.123502 GGAATTCCCTTTCTTTAACCGAGTC 59.876 44.000 14.03 0.00 0.00 3.36
456 457 3.690475 TCCCTTTCTTTAACCGAGTCC 57.310 47.619 0.00 0.00 0.00 3.85
457 458 2.028748 TCCCTTTCTTTAACCGAGTCCG 60.029 50.000 0.00 0.00 0.00 4.79
459 460 3.251571 CCTTTCTTTAACCGAGTCCGAG 58.748 50.000 0.00 0.00 38.22 4.63
480 481 1.353694 AGGAACAGCCATGCTCTTTCT 59.646 47.619 6.82 0.00 36.40 2.52
494 495 4.272504 TGCTCTTTCTTTTAACCGAGTGTG 59.727 41.667 0.00 0.00 0.00 3.82
505 506 2.676471 GAGTGTGCCGGCCCAATT 60.676 61.111 26.77 10.77 0.00 2.32
506 507 2.203625 AGTGTGCCGGCCCAATTT 60.204 55.556 26.77 4.86 0.00 1.82
507 508 2.212900 GAGTGTGCCGGCCCAATTTC 62.213 60.000 26.77 13.44 0.00 2.17
508 509 2.994417 TGTGCCGGCCCAATTTCC 60.994 61.111 26.77 1.72 0.00 3.13
509 510 3.770040 GTGCCGGCCCAATTTCCC 61.770 66.667 26.77 0.00 0.00 3.97
512 529 2.284258 CCGGCCCAATTTCCCCAA 60.284 61.111 0.00 0.00 0.00 4.12
530 547 0.249955 AAATTGCAGCCCATTTCCCG 59.750 50.000 0.00 0.00 0.00 5.14
680 699 4.935495 CACTGCCCACTGGTGCGT 62.935 66.667 0.00 0.00 0.00 5.24
681 700 3.238497 ACTGCCCACTGGTGCGTA 61.238 61.111 0.00 0.00 0.00 4.42
701 720 0.853530 AAGCAAAACTCCACCCTCCT 59.146 50.000 0.00 0.00 0.00 3.69
702 721 0.402121 AGCAAAACTCCACCCTCCTC 59.598 55.000 0.00 0.00 0.00 3.71
704 723 0.771127 CAAAACTCCACCCTCCTCCA 59.229 55.000 0.00 0.00 0.00 3.86
823 846 4.189188 GACGGCGCCTCGAGCTTA 62.189 66.667 26.68 0.00 40.39 3.09
827 850 4.143333 GCGCCTCGAGCTTACCCA 62.143 66.667 6.99 0.00 40.39 4.51
828 851 2.577059 CGCCTCGAGCTTACCCAA 59.423 61.111 6.99 0.00 40.39 4.12
829 852 1.144057 CGCCTCGAGCTTACCCAAT 59.856 57.895 6.99 0.00 40.39 3.16
830 853 0.387929 CGCCTCGAGCTTACCCAATA 59.612 55.000 6.99 0.00 40.39 1.90
831 854 1.603172 CGCCTCGAGCTTACCCAATAG 60.603 57.143 6.99 0.00 40.39 1.73
832 855 1.413077 GCCTCGAGCTTACCCAATAGT 59.587 52.381 6.99 0.00 38.99 2.12
843 881 6.881602 AGCTTACCCAATAGTTTCTCTTCTTG 59.118 38.462 0.00 0.00 0.00 3.02
902 940 4.200283 CGTCTGCTCCTCCTCCGC 62.200 72.222 0.00 0.00 0.00 5.54
946 984 2.231235 CTGAACCCACATTAAGTTGCCC 59.769 50.000 0.00 0.00 0.00 5.36
1031 1069 9.413734 GATACTTAACTGTAAGGGTAGGTTCTA 57.586 37.037 0.00 0.00 41.03 2.10
1038 1076 4.774200 TGTAAGGGTAGGTTCTAACTGTCC 59.226 45.833 0.00 0.00 0.00 4.02
1045 1086 5.105064 GGTAGGTTCTAACTGTCCAGCAATA 60.105 44.000 0.00 0.00 0.00 1.90
1046 1087 5.499004 AGGTTCTAACTGTCCAGCAATAA 57.501 39.130 0.00 0.00 0.00 1.40
1047 1088 6.067217 AGGTTCTAACTGTCCAGCAATAAT 57.933 37.500 0.00 0.00 0.00 1.28
1050 1091 5.036117 TCTAACTGTCCAGCAATAATCCC 57.964 43.478 0.00 0.00 0.00 3.85
1217 1258 5.258841 GGCCAACCAGTTAGTAAAGGTATT 58.741 41.667 0.00 0.00 33.15 1.89
1237 1278 3.103447 TGATTCCTTGCTCTCGCTATG 57.897 47.619 0.00 0.00 36.97 2.23
1261 1302 3.126001 TCAGTTCCCAGTCAATCACAC 57.874 47.619 0.00 0.00 0.00 3.82
1299 1341 7.308469 GGCTTGAATGGATTCTTATGTCATCTC 60.308 40.741 1.26 0.00 37.67 2.75
1349 1391 2.508300 GCCCTCCAACCATTCTAGGTAA 59.492 50.000 0.00 0.00 42.25 2.85
1386 1428 3.518634 TGATGCTGTGTTGCTCGTATA 57.481 42.857 0.00 0.00 0.00 1.47
1418 2395 6.048732 TCATTAGAACTGTGGTGCTATTCA 57.951 37.500 0.00 0.00 33.89 2.57
1423 2400 6.299805 AGAACTGTGGTGCTATTCAATAGA 57.700 37.500 8.74 0.00 34.77 1.98
1430 2407 7.816640 TGTGGTGCTATTCAATAGAAAAACTC 58.183 34.615 8.74 0.00 37.29 3.01
1485 2462 6.712095 CCATGCCTTTGTCTAGCTTATTGATA 59.288 38.462 0.00 0.00 0.00 2.15
1486 2463 7.392673 CCATGCCTTTGTCTAGCTTATTGATAT 59.607 37.037 0.00 0.00 0.00 1.63
1487 2464 8.790718 CATGCCTTTGTCTAGCTTATTGATATT 58.209 33.333 0.00 0.00 0.00 1.28
1488 2465 8.158169 TGCCTTTGTCTAGCTTATTGATATTG 57.842 34.615 0.00 0.00 0.00 1.90
1490 2467 9.007901 GCCTTTGTCTAGCTTATTGATATTGAT 57.992 33.333 0.00 0.00 0.00 2.57
1527 2504 7.995463 TTTTGCTGTAACATTAAAGACCAAC 57.005 32.000 0.00 0.00 0.00 3.77
1531 2508 6.142817 GCTGTAACATTAAAGACCAACACAG 58.857 40.000 0.00 0.00 34.29 3.66
1667 2653 6.399639 TTTTGCTTTACGAGATTCCCTTTT 57.600 33.333 0.00 0.00 0.00 2.27
1677 2663 4.621747 CGAGATTCCCTTTTAGTCTGCACT 60.622 45.833 0.00 0.00 36.55 4.40
1738 2724 2.491897 GGCCCGTTGGTCCGTTTTT 61.492 57.895 0.00 0.00 0.00 1.94
1755 2741 5.391416 CCGTTTTTGCTGTCATTTTGGTTTT 60.391 36.000 0.00 0.00 0.00 2.43
1835 2821 2.812591 CTCACTCTCTGTTTGCAAGCAT 59.187 45.455 16.74 0.00 0.00 3.79
1848 2841 2.983402 CAAGCATTGTGACCTCTGTG 57.017 50.000 0.00 0.00 42.34 3.66
1849 2842 2.224606 CAAGCATTGTGACCTCTGTGT 58.775 47.619 0.00 0.00 42.34 3.72
1850 2843 2.620115 CAAGCATTGTGACCTCTGTGTT 59.380 45.455 0.00 0.00 42.34 3.32
1851 2844 2.936202 AGCATTGTGACCTCTGTGTTT 58.064 42.857 0.00 0.00 0.00 2.83
1852 2845 2.620115 AGCATTGTGACCTCTGTGTTTG 59.380 45.455 0.00 0.00 0.00 2.93
1853 2846 2.859806 GCATTGTGACCTCTGTGTTTGC 60.860 50.000 0.00 0.00 0.00 3.68
1854 2847 2.121291 TTGTGACCTCTGTGTTTGCA 57.879 45.000 0.00 0.00 0.00 4.08
1855 2848 2.121291 TGTGACCTCTGTGTTTGCAA 57.879 45.000 0.00 0.00 0.00 4.08
1856 2849 2.016318 TGTGACCTCTGTGTTTGCAAG 58.984 47.619 0.00 0.00 0.00 4.01
1857 2850 1.024271 TGACCTCTGTGTTTGCAAGC 58.976 50.000 6.31 6.31 0.00 4.01
1858 2851 1.024271 GACCTCTGTGTTTGCAAGCA 58.976 50.000 12.36 12.36 0.00 3.91
1859 2852 1.610522 GACCTCTGTGTTTGCAAGCAT 59.389 47.619 19.30 1.67 0.00 3.79
1860 2853 2.034124 ACCTCTGTGTTTGCAAGCATT 58.966 42.857 19.30 0.00 0.00 3.56
2039 3032 3.459828 TGATCTCCCAGAATTACACCCA 58.540 45.455 0.00 0.00 0.00 4.51
2069 3062 1.377333 GAAGCCCTTTCCTGTCCCG 60.377 63.158 0.00 0.00 0.00 5.14
2102 3095 1.081175 GCAAGCTTCCCGCAAAGAC 60.081 57.895 0.00 0.00 42.61 3.01
2189 3182 0.995024 AGCTTGTCCCTGTTGCCTAT 59.005 50.000 0.00 0.00 0.00 2.57
2234 3227 2.288579 GCTCATCAGAGGCATCTCTCAG 60.289 54.545 0.00 0.00 46.79 3.35
2238 3231 2.186243 TCAGAGGCATCTCTCAGCTTT 58.814 47.619 0.00 0.00 46.79 3.51
2257 3250 7.816995 TCAGCTTTTGAATGTTGTTACAGTTTT 59.183 29.630 0.00 0.00 37.77 2.43
2269 3262 2.671130 ACAGTTTTTGGTTGCAGGTG 57.329 45.000 0.00 0.00 0.00 4.00
2271 3264 2.765699 ACAGTTTTTGGTTGCAGGTGAT 59.234 40.909 0.00 0.00 0.00 3.06
2272 3265 3.197549 ACAGTTTTTGGTTGCAGGTGATT 59.802 39.130 0.00 0.00 0.00 2.57
2275 3268 3.634568 TTTTGGTTGCAGGTGATTACG 57.365 42.857 0.00 0.00 0.00 3.18
2283 3276 5.335661 GGTTGCAGGTGATTACGAAATTCTT 60.336 40.000 0.00 0.00 0.00 2.52
2571 3567 3.244526 ACCATCTTTTTGACCCATTTGGC 60.245 43.478 0.00 0.00 37.83 4.52
2604 3600 2.362077 GCATGACACCAGGTTTGACTTT 59.638 45.455 0.00 0.00 0.00 2.66
2640 3636 4.865925 GCAATTGTTGAGCTATGCATTCAA 59.134 37.500 3.54 6.33 0.00 2.69
2650 3646 1.913778 ATGCATTCAAGCTGGTGTCA 58.086 45.000 0.00 0.00 34.99 3.58
2811 3807 1.618343 ACATTTAGCAACCAACAGGGC 59.382 47.619 0.00 0.00 42.05 5.19
2815 3811 1.422977 TAGCAACCAACAGGGCCAGA 61.423 55.000 6.18 0.00 42.05 3.86
2827 3823 2.283101 GCCAGACACCCATGCCAA 60.283 61.111 0.00 0.00 0.00 4.52
2946 3942 1.490574 GGTACTGCTCTGAGGTCCAT 58.509 55.000 6.83 0.00 0.00 3.41
3105 4101 0.831711 GCCCTCCTCTCAGATCCTCC 60.832 65.000 0.00 0.00 0.00 4.30
3251 4247 0.523968 CGGATGGCTGCATGAAAACG 60.524 55.000 0.50 0.00 0.00 3.60
3319 4315 0.935196 CGAAGGTGCTTATTACCCGC 59.065 55.000 0.00 0.00 39.05 6.13
3476 4472 8.655935 AAAAGTATTCATCAAAAGGTGATCCT 57.344 30.769 0.00 0.00 44.01 3.24
3528 4524 6.030548 TCCTAGTGATACTATGCATCTTGC 57.969 41.667 0.19 0.00 45.29 4.01
3606 4602 1.542108 GGATGTCCTCTGCTATGGTGC 60.542 57.143 0.00 0.00 0.00 5.01
3755 4751 7.227512 AGCTGATTCTTGGGATTAAACTAATCG 59.772 37.037 0.00 0.00 44.24 3.34
3803 4799 3.004106 GTCTGGCTGTGATTAATCATGGC 59.996 47.826 26.29 26.29 39.30 4.40
3825 4821 4.787598 CCTAAAAGCTGTGCAACTTGTAG 58.212 43.478 12.55 12.55 38.04 2.74
3876 4872 1.415374 GTGCGGCTACATGTATACCG 58.585 55.000 29.57 29.57 46.50 4.02
3945 4941 2.293677 TACTCTGTAACATGGCTGCG 57.706 50.000 0.00 0.00 0.00 5.18
3950 4946 1.806542 CTGTAACATGGCTGCGAAAGT 59.193 47.619 0.00 0.00 0.00 2.66
4095 5091 7.110043 TGCAGATATCATAAACCATTTGCAA 57.890 32.000 5.32 0.00 36.09 4.08
4157 5268 6.030727 ACATAATCTCAAATTAAGGGCCCT 57.969 37.500 22.28 22.28 0.00 5.19
4175 5286 2.487762 CCCTGAGCTCGCACAATTTTTA 59.512 45.455 9.64 0.00 0.00 1.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.755686 ATGGGACTTCTGGAGCGATC 59.244 55.000 0.00 0.00 0.00 3.69
1 2 0.467384 CATGGGACTTCTGGAGCGAT 59.533 55.000 0.00 0.00 0.00 4.58
2 3 0.904865 ACATGGGACTTCTGGAGCGA 60.905 55.000 0.00 0.00 0.00 4.93
3 4 0.742281 CACATGGGACTTCTGGAGCG 60.742 60.000 0.00 0.00 0.00 5.03
4 5 0.615331 TCACATGGGACTTCTGGAGC 59.385 55.000 0.00 0.00 0.00 4.70
5 6 2.770802 AGATCACATGGGACTTCTGGAG 59.229 50.000 0.00 0.00 0.00 3.86
6 7 2.768527 GAGATCACATGGGACTTCTGGA 59.231 50.000 5.80 0.00 0.00 3.86
7 8 2.158842 GGAGATCACATGGGACTTCTGG 60.159 54.545 5.80 0.00 0.00 3.86
8 9 2.770802 AGGAGATCACATGGGACTTCTG 59.229 50.000 5.80 0.00 0.00 3.02
9 10 2.770802 CAGGAGATCACATGGGACTTCT 59.229 50.000 0.00 0.00 0.00 2.85
10 11 2.503356 ACAGGAGATCACATGGGACTTC 59.497 50.000 0.00 0.20 0.00 3.01
11 12 2.555664 ACAGGAGATCACATGGGACTT 58.444 47.619 0.00 0.00 0.00 3.01
12 13 2.238144 CAACAGGAGATCACATGGGACT 59.762 50.000 0.00 0.00 0.00 3.85
13 14 2.237143 TCAACAGGAGATCACATGGGAC 59.763 50.000 0.00 0.00 0.00 4.46
14 15 2.550175 TCAACAGGAGATCACATGGGA 58.450 47.619 0.00 0.00 0.00 4.37
15 16 3.572632 ATCAACAGGAGATCACATGGG 57.427 47.619 9.55 0.00 0.00 4.00
16 17 5.932883 CAGATATCAACAGGAGATCACATGG 59.067 44.000 9.55 0.00 44.84 3.66
17 18 6.756221 TCAGATATCAACAGGAGATCACATG 58.244 40.000 5.32 3.16 44.84 3.21
18 19 6.990908 TCAGATATCAACAGGAGATCACAT 57.009 37.500 5.32 0.00 44.84 3.21
19 20 6.990908 ATCAGATATCAACAGGAGATCACA 57.009 37.500 5.32 0.00 44.84 3.58
20 21 7.890515 TGTATCAGATATCAACAGGAGATCAC 58.109 38.462 5.32 0.00 44.84 3.06
21 22 8.363390 GTTGTATCAGATATCAACAGGAGATCA 58.637 37.037 20.12 0.24 44.84 2.92
22 23 8.584157 AGTTGTATCAGATATCAACAGGAGATC 58.416 37.037 23.56 0.00 43.16 2.75
23 24 8.489676 AGTTGTATCAGATATCAACAGGAGAT 57.510 34.615 23.56 10.19 41.43 2.75
24 25 7.904558 AGTTGTATCAGATATCAACAGGAGA 57.095 36.000 23.56 0.00 41.43 3.71
25 26 7.440556 CCAAGTTGTATCAGATATCAACAGGAG 59.559 40.741 23.56 15.47 41.43 3.69
26 27 7.275183 CCAAGTTGTATCAGATATCAACAGGA 58.725 38.462 23.56 0.00 41.43 3.86
27 28 6.017605 GCCAAGTTGTATCAGATATCAACAGG 60.018 42.308 23.56 23.18 41.43 4.00
28 29 6.765036 AGCCAAGTTGTATCAGATATCAACAG 59.235 38.462 23.56 18.47 41.43 3.16
29 30 6.539826 CAGCCAAGTTGTATCAGATATCAACA 59.460 38.462 23.56 8.43 41.43 3.33
30 31 6.512415 GCAGCCAAGTTGTATCAGATATCAAC 60.512 42.308 18.70 18.70 39.95 3.18
31 32 5.528690 GCAGCCAAGTTGTATCAGATATCAA 59.471 40.000 5.32 0.00 0.00 2.57
32 33 5.059161 GCAGCCAAGTTGTATCAGATATCA 58.941 41.667 5.32 0.00 0.00 2.15
33 34 5.059161 TGCAGCCAAGTTGTATCAGATATC 58.941 41.667 1.45 0.00 0.00 1.63
34 35 5.039920 TGCAGCCAAGTTGTATCAGATAT 57.960 39.130 1.45 0.00 0.00 1.63
35 36 4.486125 TGCAGCCAAGTTGTATCAGATA 57.514 40.909 1.45 0.00 0.00 1.98
36 37 3.354948 TGCAGCCAAGTTGTATCAGAT 57.645 42.857 1.45 0.00 0.00 2.90
37 38 2.857186 TGCAGCCAAGTTGTATCAGA 57.143 45.000 1.45 0.00 0.00 3.27
38 39 3.181493 GGATTGCAGCCAAGTTGTATCAG 60.181 47.826 1.45 0.00 33.80 2.90
39 40 2.754552 GGATTGCAGCCAAGTTGTATCA 59.245 45.455 1.45 0.00 33.80 2.15
40 41 2.223340 CGGATTGCAGCCAAGTTGTATC 60.223 50.000 1.45 0.00 33.80 2.24
41 42 1.745087 CGGATTGCAGCCAAGTTGTAT 59.255 47.619 1.45 0.00 33.80 2.29
42 43 1.164411 CGGATTGCAGCCAAGTTGTA 58.836 50.000 1.45 0.00 33.80 2.41
43 44 0.537143 TCGGATTGCAGCCAAGTTGT 60.537 50.000 1.45 0.00 33.80 3.32
44 45 0.109597 GTCGGATTGCAGCCAAGTTG 60.110 55.000 8.23 0.00 33.80 3.16
45 46 1.577328 CGTCGGATTGCAGCCAAGTT 61.577 55.000 8.23 0.00 33.80 2.66
46 47 2.034879 CGTCGGATTGCAGCCAAGT 61.035 57.895 8.23 0.00 33.80 3.16
47 48 2.787249 CGTCGGATTGCAGCCAAG 59.213 61.111 8.23 0.00 33.80 3.61
48 49 3.430862 GCGTCGGATTGCAGCCAA 61.431 61.111 8.23 0.00 35.01 4.52
51 52 4.210304 GTCGCGTCGGATTGCAGC 62.210 66.667 5.77 0.00 0.00 5.25
52 53 2.379634 TTGTCGCGTCGGATTGCAG 61.380 57.895 5.77 0.31 0.00 4.41
53 54 2.356433 TTGTCGCGTCGGATTGCA 60.356 55.556 5.77 0.00 0.00 4.08
54 55 2.095843 GTTGTCGCGTCGGATTGC 59.904 61.111 5.77 0.00 0.00 3.56
55 56 0.233590 TTTGTTGTCGCGTCGGATTG 59.766 50.000 5.77 0.00 0.00 2.67
56 57 0.511221 CTTTGTTGTCGCGTCGGATT 59.489 50.000 5.77 0.00 0.00 3.01
57 58 1.897398 GCTTTGTTGTCGCGTCGGAT 61.897 55.000 5.77 0.00 0.00 4.18
58 59 2.591311 GCTTTGTTGTCGCGTCGGA 61.591 57.895 5.77 0.00 0.00 4.55
59 60 2.127758 GCTTTGTTGTCGCGTCGG 60.128 61.111 5.77 0.00 0.00 4.79
60 61 1.154836 GAGCTTTGTTGTCGCGTCG 60.155 57.895 5.77 0.00 0.00 5.12
61 62 0.111089 CAGAGCTTTGTTGTCGCGTC 60.111 55.000 5.77 0.00 0.00 5.19
62 63 1.498865 CCAGAGCTTTGTTGTCGCGT 61.499 55.000 5.77 0.00 0.00 6.01
63 64 1.205064 CCAGAGCTTTGTTGTCGCG 59.795 57.895 0.00 0.00 0.00 5.87
64 65 1.135859 CATCCAGAGCTTTGTTGTCGC 60.136 52.381 3.25 0.00 0.00 5.19
65 66 1.135859 GCATCCAGAGCTTTGTTGTCG 60.136 52.381 3.25 0.00 0.00 4.35
66 67 1.200948 GGCATCCAGAGCTTTGTTGTC 59.799 52.381 3.25 0.00 0.00 3.18
67 68 1.251251 GGCATCCAGAGCTTTGTTGT 58.749 50.000 3.25 0.00 0.00 3.32
68 69 0.529378 GGGCATCCAGAGCTTTGTTG 59.471 55.000 3.25 2.17 0.00 3.33
69 70 0.112995 TGGGCATCCAGAGCTTTGTT 59.887 50.000 3.25 0.00 38.32 2.83
70 71 0.112995 TTGGGCATCCAGAGCTTTGT 59.887 50.000 3.25 0.00 45.04 2.83
71 72 1.259609 TTTGGGCATCCAGAGCTTTG 58.740 50.000 0.00 0.00 45.04 2.77
72 73 2.105766 GATTTGGGCATCCAGAGCTTT 58.894 47.619 0.00 0.00 45.04 3.51
73 74 1.287146 AGATTTGGGCATCCAGAGCTT 59.713 47.619 0.00 0.00 40.43 3.74
74 75 0.924823 AGATTTGGGCATCCAGAGCT 59.075 50.000 0.00 0.00 45.04 4.09
75 76 1.680207 GAAGATTTGGGCATCCAGAGC 59.320 52.381 0.00 0.00 45.04 4.09
76 77 2.950309 CTGAAGATTTGGGCATCCAGAG 59.050 50.000 0.00 0.00 45.04 3.35
77 78 2.947243 GCTGAAGATTTGGGCATCCAGA 60.947 50.000 0.00 0.00 45.04 3.86
78 79 1.407979 GCTGAAGATTTGGGCATCCAG 59.592 52.381 0.00 0.00 45.04 3.86
79 80 1.272592 TGCTGAAGATTTGGGCATCCA 60.273 47.619 0.00 0.00 42.25 3.41
80 81 1.477553 TGCTGAAGATTTGGGCATCC 58.522 50.000 0.00 0.00 0.00 3.51
81 82 2.756760 TCTTGCTGAAGATTTGGGCATC 59.243 45.455 0.00 0.00 32.98 3.91
82 83 2.758979 CTCTTGCTGAAGATTTGGGCAT 59.241 45.455 0.00 0.00 37.58 4.40
83 84 2.165167 CTCTTGCTGAAGATTTGGGCA 58.835 47.619 0.00 0.00 37.58 5.36
84 85 2.163211 GTCTCTTGCTGAAGATTTGGGC 59.837 50.000 0.00 0.00 37.58 5.36
85 86 3.415212 TGTCTCTTGCTGAAGATTTGGG 58.585 45.455 0.00 0.00 37.58 4.12
86 87 5.443185 TTTGTCTCTTGCTGAAGATTTGG 57.557 39.130 0.00 0.00 37.58 3.28
87 88 4.916249 GCTTTGTCTCTTGCTGAAGATTTG 59.084 41.667 0.00 0.00 37.58 2.32
88 89 4.826183 AGCTTTGTCTCTTGCTGAAGATTT 59.174 37.500 0.00 0.00 37.58 2.17
89 90 4.396522 AGCTTTGTCTCTTGCTGAAGATT 58.603 39.130 0.00 0.00 37.58 2.40
90 91 4.018484 AGCTTTGTCTCTTGCTGAAGAT 57.982 40.909 0.00 0.00 37.58 2.40
91 92 3.482156 AGCTTTGTCTCTTGCTGAAGA 57.518 42.857 0.00 0.00 36.72 2.87
92 93 3.058363 GGAAGCTTTGTCTCTTGCTGAAG 60.058 47.826 0.00 0.00 35.79 3.02
93 94 2.880890 GGAAGCTTTGTCTCTTGCTGAA 59.119 45.455 0.00 0.00 35.79 3.02
94 95 2.498167 GGAAGCTTTGTCTCTTGCTGA 58.502 47.619 0.00 0.00 35.79 4.26
95 96 1.538950 GGGAAGCTTTGTCTCTTGCTG 59.461 52.381 0.00 0.00 35.79 4.41
96 97 1.879796 CGGGAAGCTTTGTCTCTTGCT 60.880 52.381 0.00 0.00 37.37 3.91
97 98 0.519077 CGGGAAGCTTTGTCTCTTGC 59.481 55.000 0.00 0.00 0.00 4.01
98 99 1.160137 CCGGGAAGCTTTGTCTCTTG 58.840 55.000 0.00 0.00 0.00 3.02
99 100 0.606673 GCCGGGAAGCTTTGTCTCTT 60.607 55.000 2.18 0.00 0.00 2.85
100 101 1.003233 GCCGGGAAGCTTTGTCTCT 60.003 57.895 2.18 0.00 0.00 3.10
101 102 0.678048 ATGCCGGGAAGCTTTGTCTC 60.678 55.000 0.00 0.00 0.00 3.36
102 103 0.962356 CATGCCGGGAAGCTTTGTCT 60.962 55.000 0.00 0.00 0.00 3.41
103 104 1.508088 CATGCCGGGAAGCTTTGTC 59.492 57.895 0.00 0.00 0.00 3.18
104 105 2.639327 GCATGCCGGGAAGCTTTGT 61.639 57.895 16.47 0.00 0.00 2.83
105 106 2.157305 TTGCATGCCGGGAAGCTTTG 62.157 55.000 23.67 6.95 0.00 2.77
106 107 1.259840 ATTGCATGCCGGGAAGCTTT 61.260 50.000 23.67 8.55 0.00 3.51
107 108 1.259840 AATTGCATGCCGGGAAGCTT 61.260 50.000 23.67 8.25 0.00 3.74
108 109 1.683365 AATTGCATGCCGGGAAGCT 60.683 52.632 23.67 1.53 0.00 3.74
109 110 1.519898 CAATTGCATGCCGGGAAGC 60.520 57.895 16.90 16.90 0.00 3.86
110 111 1.519898 GCAATTGCATGCCGGGAAG 60.520 57.895 25.36 0.00 40.49 3.46
111 112 2.578128 GCAATTGCATGCCGGGAA 59.422 55.556 25.36 2.46 40.49 3.97
117 118 0.461339 CCCTTGAGGCAATTGCATGC 60.461 55.000 30.32 18.75 45.67 4.06
118 119 0.899720 ACCCTTGAGGCAATTGCATG 59.100 50.000 30.32 14.50 44.36 4.06
119 120 0.899720 CACCCTTGAGGCAATTGCAT 59.100 50.000 30.32 25.28 44.36 3.96
120 121 1.186917 CCACCCTTGAGGCAATTGCA 61.187 55.000 30.32 8.86 44.36 4.08
121 122 1.593265 CCACCCTTGAGGCAATTGC 59.407 57.895 22.47 22.47 40.58 3.56
128 129 3.260100 ACCCAGCCACCCTTGAGG 61.260 66.667 0.00 0.00 43.78 3.86
129 130 0.909610 TAGACCCAGCCACCCTTGAG 60.910 60.000 0.00 0.00 0.00 3.02
130 131 1.159905 TAGACCCAGCCACCCTTGA 59.840 57.895 0.00 0.00 0.00 3.02
131 132 1.299976 GTAGACCCAGCCACCCTTG 59.700 63.158 0.00 0.00 0.00 3.61
132 133 1.923909 GGTAGACCCAGCCACCCTT 60.924 63.158 0.00 0.00 0.00 3.95
133 134 2.285442 GGTAGACCCAGCCACCCT 60.285 66.667 0.00 0.00 0.00 4.34
134 135 2.609610 TGGTAGACCCAGCCACCC 60.610 66.667 0.00 0.00 38.72 4.61
135 136 2.669240 GTGGTAGACCCAGCCACC 59.331 66.667 0.00 0.00 46.45 4.61
136 137 1.003718 GTGTGGTAGACCCAGCCAC 60.004 63.158 6.04 6.04 46.45 5.01
137 138 2.221299 GGTGTGGTAGACCCAGCCA 61.221 63.158 0.00 0.00 46.45 4.75
138 139 2.669240 GGTGTGGTAGACCCAGCC 59.331 66.667 0.00 0.00 46.45 4.85
143 144 2.062971 TATCGAGGGTGTGGTAGACC 57.937 55.000 0.00 0.00 0.00 3.85
144 145 2.100418 GGTTATCGAGGGTGTGGTAGAC 59.900 54.545 0.00 0.00 0.00 2.59
145 146 2.291735 TGGTTATCGAGGGTGTGGTAGA 60.292 50.000 0.00 0.00 0.00 2.59
146 147 2.104967 TGGTTATCGAGGGTGTGGTAG 58.895 52.381 0.00 0.00 0.00 3.18
147 148 2.234896 TGGTTATCGAGGGTGTGGTA 57.765 50.000 0.00 0.00 0.00 3.25
148 149 1.278127 CTTGGTTATCGAGGGTGTGGT 59.722 52.381 0.00 0.00 0.00 4.16
149 150 1.406887 CCTTGGTTATCGAGGGTGTGG 60.407 57.143 0.00 0.00 42.30 4.17
150 151 2.012051 GCCTTGGTTATCGAGGGTGTG 61.012 57.143 0.28 0.00 45.46 3.82
151 152 0.252197 GCCTTGGTTATCGAGGGTGT 59.748 55.000 0.28 0.00 45.46 4.16
152 153 0.463833 GGCCTTGGTTATCGAGGGTG 60.464 60.000 0.28 0.00 45.46 4.61
153 154 1.912971 GGCCTTGGTTATCGAGGGT 59.087 57.895 0.28 0.00 45.46 4.34
154 155 1.227556 CGGCCTTGGTTATCGAGGG 60.228 63.158 0.00 0.00 45.46 4.30
156 157 0.876342 GCTCGGCCTTGGTTATCGAG 60.876 60.000 0.00 0.00 46.72 4.04
157 158 1.143183 GCTCGGCCTTGGTTATCGA 59.857 57.895 0.00 0.00 0.00 3.59
158 159 1.144057 AGCTCGGCCTTGGTTATCG 59.856 57.895 0.00 0.00 0.00 2.92
159 160 1.440145 GCAGCTCGGCCTTGGTTATC 61.440 60.000 0.00 0.00 0.00 1.75
160 161 1.452108 GCAGCTCGGCCTTGGTTAT 60.452 57.895 0.00 0.00 0.00 1.89
161 162 2.046314 GCAGCTCGGCCTTGGTTA 60.046 61.111 0.00 0.00 0.00 2.85
169 170 0.035458 AACTATATGGGCAGCTCGGC 59.965 55.000 0.00 0.00 40.20 5.54
170 171 2.417719 GAAACTATATGGGCAGCTCGG 58.582 52.381 0.00 0.00 0.00 4.63
171 172 2.417719 GGAAACTATATGGGCAGCTCG 58.582 52.381 0.00 0.00 0.00 5.03
172 173 2.553247 GGGGAAACTATATGGGCAGCTC 60.553 54.545 0.00 0.00 0.00 4.09
173 174 1.425448 GGGGAAACTATATGGGCAGCT 59.575 52.381 0.00 0.00 0.00 4.24
174 175 1.144913 TGGGGAAACTATATGGGCAGC 59.855 52.381 0.00 0.00 0.00 5.25
175 176 2.810400 CGTGGGGAAACTATATGGGCAG 60.810 54.545 0.00 0.00 0.00 4.85
176 177 1.142060 CGTGGGGAAACTATATGGGCA 59.858 52.381 0.00 0.00 0.00 5.36
177 178 1.892209 CGTGGGGAAACTATATGGGC 58.108 55.000 0.00 0.00 0.00 5.36
178 179 1.142060 TGCGTGGGGAAACTATATGGG 59.858 52.381 0.00 0.00 0.00 4.00
179 180 2.631160 TGCGTGGGGAAACTATATGG 57.369 50.000 0.00 0.00 0.00 2.74
180 181 3.074412 GGATGCGTGGGGAAACTATATG 58.926 50.000 0.00 0.00 0.00 1.78
181 182 2.039879 GGGATGCGTGGGGAAACTATAT 59.960 50.000 0.00 0.00 0.00 0.86
182 183 1.418637 GGGATGCGTGGGGAAACTATA 59.581 52.381 0.00 0.00 0.00 1.31
183 184 0.182775 GGGATGCGTGGGGAAACTAT 59.817 55.000 0.00 0.00 0.00 2.12
184 185 0.912487 AGGGATGCGTGGGGAAACTA 60.912 55.000 0.00 0.00 0.00 2.24
185 186 2.231380 AGGGATGCGTGGGGAAACT 61.231 57.895 0.00 0.00 0.00 2.66
186 187 2.046285 CAGGGATGCGTGGGGAAAC 61.046 63.158 0.00 0.00 0.00 2.78
187 188 2.354729 CAGGGATGCGTGGGGAAA 59.645 61.111 0.00 0.00 0.00 3.13
188 189 4.424711 GCAGGGATGCGTGGGGAA 62.425 66.667 9.04 0.00 0.00 3.97
190 191 3.118768 TATGCAGGGATGCGTGGGG 62.119 63.158 9.04 0.00 37.69 4.96
191 192 1.893808 GTATGCAGGGATGCGTGGG 60.894 63.158 9.04 0.00 37.69 4.61
192 193 1.153188 TGTATGCAGGGATGCGTGG 60.153 57.895 9.04 0.00 37.69 4.94
193 194 1.779025 GCTGTATGCAGGGATGCGTG 61.779 60.000 13.03 2.14 42.78 5.34
194 195 1.524621 GCTGTATGCAGGGATGCGT 60.525 57.895 13.03 0.13 42.78 5.24
195 196 2.256591 GGCTGTATGCAGGGATGCG 61.257 63.158 13.03 0.00 45.15 4.73
196 197 2.256591 CGGCTGTATGCAGGGATGC 61.257 63.158 13.03 0.00 45.15 3.91
197 198 2.256591 GCGGCTGTATGCAGGGATG 61.257 63.158 13.03 0.00 45.15 3.51
198 199 2.111878 GCGGCTGTATGCAGGGAT 59.888 61.111 13.03 0.00 45.15 3.85
199 200 3.083349 AGCGGCTGTATGCAGGGA 61.083 61.111 13.03 0.00 45.15 4.20
200 201 2.898840 CAGCGGCTGTATGCAGGG 60.899 66.667 21.60 0.00 45.15 4.45
201 202 3.580193 GCAGCGGCTGTATGCAGG 61.580 66.667 28.88 3.61 45.15 4.85
211 212 3.805891 GAGGAGGATCAGCAGCGGC 62.806 68.421 0.00 0.00 36.25 6.53
212 213 1.684386 AAGAGGAGGATCAGCAGCGG 61.684 60.000 0.00 0.00 36.25 5.52
213 214 0.249405 GAAGAGGAGGATCAGCAGCG 60.249 60.000 0.00 0.00 36.25 5.18
214 215 1.122227 AGAAGAGGAGGATCAGCAGC 58.878 55.000 0.00 0.00 36.25 5.25
215 216 3.565307 ACTAGAAGAGGAGGATCAGCAG 58.435 50.000 0.00 0.00 36.25 4.24
216 217 3.053320 TGACTAGAAGAGGAGGATCAGCA 60.053 47.826 0.00 0.00 36.25 4.41
217 218 3.561143 TGACTAGAAGAGGAGGATCAGC 58.439 50.000 0.00 0.00 36.25 4.26
218 219 7.004086 AGTATTGACTAGAAGAGGAGGATCAG 58.996 42.308 0.00 0.00 31.88 2.90
219 220 6.916909 AGTATTGACTAGAAGAGGAGGATCA 58.083 40.000 0.00 0.00 31.88 2.92
220 221 7.231467 AGAGTATTGACTAGAAGAGGAGGATC 58.769 42.308 0.00 0.00 35.45 3.36
221 222 7.161715 AGAGTATTGACTAGAAGAGGAGGAT 57.838 40.000 0.00 0.00 35.45 3.24
222 223 6.584471 AGAGTATTGACTAGAAGAGGAGGA 57.416 41.667 0.00 0.00 35.45 3.71
223 224 6.430000 GCTAGAGTATTGACTAGAAGAGGAGG 59.570 46.154 0.00 0.00 38.53 4.30
224 225 6.995686 TGCTAGAGTATTGACTAGAAGAGGAG 59.004 42.308 0.00 0.00 38.53 3.69
225 226 6.901300 TGCTAGAGTATTGACTAGAAGAGGA 58.099 40.000 0.00 0.00 38.53 3.71
226 227 7.665559 AGATGCTAGAGTATTGACTAGAAGAGG 59.334 40.741 0.00 0.00 38.53 3.69
227 228 8.621532 AGATGCTAGAGTATTGACTAGAAGAG 57.378 38.462 0.00 0.00 38.53 2.85
228 229 9.496873 GTAGATGCTAGAGTATTGACTAGAAGA 57.503 37.037 0.00 0.00 38.53 2.87
229 230 9.278978 TGTAGATGCTAGAGTATTGACTAGAAG 57.721 37.037 0.00 0.00 38.53 2.85
230 231 9.800572 ATGTAGATGCTAGAGTATTGACTAGAA 57.199 33.333 0.00 0.00 38.53 2.10
231 232 9.225436 CATGTAGATGCTAGAGTATTGACTAGA 57.775 37.037 0.00 0.00 38.53 2.43
232 233 9.225436 TCATGTAGATGCTAGAGTATTGACTAG 57.775 37.037 0.00 0.00 35.45 2.57
233 234 9.574516 TTCATGTAGATGCTAGAGTATTGACTA 57.425 33.333 0.00 0.00 35.45 2.59
234 235 8.470657 TTCATGTAGATGCTAGAGTATTGACT 57.529 34.615 0.00 0.00 39.20 3.41
235 236 9.352784 GATTCATGTAGATGCTAGAGTATTGAC 57.647 37.037 0.00 0.00 0.00 3.18
236 237 9.306777 AGATTCATGTAGATGCTAGAGTATTGA 57.693 33.333 0.00 0.00 0.00 2.57
237 238 9.926158 AAGATTCATGTAGATGCTAGAGTATTG 57.074 33.333 0.00 0.00 0.00 1.90
238 239 9.926158 CAAGATTCATGTAGATGCTAGAGTATT 57.074 33.333 0.00 0.00 0.00 1.89
239 240 8.034215 GCAAGATTCATGTAGATGCTAGAGTAT 58.966 37.037 0.00 0.00 0.00 2.12
240 241 7.014615 TGCAAGATTCATGTAGATGCTAGAGTA 59.985 37.037 0.00 0.00 31.41 2.59
241 242 6.183360 TGCAAGATTCATGTAGATGCTAGAGT 60.183 38.462 0.00 0.00 31.41 3.24
242 243 6.221659 TGCAAGATTCATGTAGATGCTAGAG 58.778 40.000 0.00 0.00 31.41 2.43
243 244 6.165700 TGCAAGATTCATGTAGATGCTAGA 57.834 37.500 0.00 0.00 31.41 2.43
244 245 6.856135 TTGCAAGATTCATGTAGATGCTAG 57.144 37.500 0.00 0.00 31.41 3.42
245 246 7.812690 AATTGCAAGATTCATGTAGATGCTA 57.187 32.000 4.94 7.10 31.41 3.49
246 247 6.710597 AATTGCAAGATTCATGTAGATGCT 57.289 33.333 4.94 0.00 31.41 3.79
247 248 6.860023 GGTAATTGCAAGATTCATGTAGATGC 59.140 38.462 4.94 0.00 0.00 3.91
248 249 7.365741 GGGTAATTGCAAGATTCATGTAGATG 58.634 38.462 4.94 0.00 0.00 2.90
249 250 6.205464 CGGGTAATTGCAAGATTCATGTAGAT 59.795 38.462 4.94 0.00 0.00 1.98
250 251 5.527214 CGGGTAATTGCAAGATTCATGTAGA 59.473 40.000 4.94 0.00 0.00 2.59
251 252 5.751680 CGGGTAATTGCAAGATTCATGTAG 58.248 41.667 4.94 0.00 0.00 2.74
252 253 4.036262 GCGGGTAATTGCAAGATTCATGTA 59.964 41.667 4.94 0.00 0.00 2.29
253 254 3.181487 GCGGGTAATTGCAAGATTCATGT 60.181 43.478 4.94 0.00 0.00 3.21
254 255 3.067180 AGCGGGTAATTGCAAGATTCATG 59.933 43.478 4.94 0.00 0.00 3.07
255 256 3.067180 CAGCGGGTAATTGCAAGATTCAT 59.933 43.478 4.94 0.00 0.00 2.57
256 257 2.423185 CAGCGGGTAATTGCAAGATTCA 59.577 45.455 4.94 0.00 0.00 2.57
257 258 2.223572 CCAGCGGGTAATTGCAAGATTC 60.224 50.000 4.94 0.00 0.00 2.52
258 259 1.750778 CCAGCGGGTAATTGCAAGATT 59.249 47.619 4.94 0.00 0.00 2.40
259 260 1.392589 CCAGCGGGTAATTGCAAGAT 58.607 50.000 4.94 0.00 0.00 2.40
260 261 2.866872 CCAGCGGGTAATTGCAAGA 58.133 52.632 4.94 0.00 0.00 3.02
274 275 2.653115 GCCAAAGAAGCCACCAGC 59.347 61.111 0.00 0.00 44.25 4.85
282 283 4.107051 CAGCGCCGGCCAAAGAAG 62.107 66.667 23.46 5.76 41.24 2.85
312 313 3.110178 GGAAACACTCCGGCGTCG 61.110 66.667 0.29 0.29 33.37 5.12
313 314 2.741211 GGGAAACACTCCGGCGTC 60.741 66.667 6.01 0.00 46.51 5.19
314 315 4.324991 GGGGAAACACTCCGGCGT 62.325 66.667 6.01 0.00 46.51 5.68
319 320 3.647771 AGGGCGGGGAAACACTCC 61.648 66.667 0.00 0.00 44.54 3.85
320 321 2.359975 CAGGGCGGGGAAACACTC 60.360 66.667 0.00 0.00 0.00 3.51
321 322 3.966543 CCAGGGCGGGGAAACACT 61.967 66.667 0.00 0.00 0.00 3.55
322 323 3.961414 TCCAGGGCGGGGAAACAC 61.961 66.667 0.00 0.00 34.36 3.32
323 324 3.961414 GTCCAGGGCGGGGAAACA 61.961 66.667 0.00 0.00 35.88 2.83
324 325 4.735358 GGTCCAGGGCGGGGAAAC 62.735 72.222 0.00 0.00 35.88 2.78
340 341 1.916181 AGATACACTGAAACCCCAGGG 59.084 52.381 0.00 0.00 43.04 4.45
341 342 3.775316 ACTAGATACACTGAAACCCCAGG 59.225 47.826 0.00 0.00 38.44 4.45
342 343 5.046591 TGAACTAGATACACTGAAACCCCAG 60.047 44.000 0.00 0.00 39.93 4.45
343 344 4.841813 TGAACTAGATACACTGAAACCCCA 59.158 41.667 0.00 0.00 0.00 4.96
344 345 5.416271 TGAACTAGATACACTGAAACCCC 57.584 43.478 0.00 0.00 0.00 4.95
345 346 4.870991 GCTGAACTAGATACACTGAAACCC 59.129 45.833 0.00 0.00 0.00 4.11
346 347 5.479306 TGCTGAACTAGATACACTGAAACC 58.521 41.667 0.00 0.00 0.00 3.27
347 348 7.331934 TCATTGCTGAACTAGATACACTGAAAC 59.668 37.037 0.00 0.00 0.00 2.78
348 349 7.386059 TCATTGCTGAACTAGATACACTGAAA 58.614 34.615 0.00 0.00 0.00 2.69
349 350 6.935167 TCATTGCTGAACTAGATACACTGAA 58.065 36.000 0.00 0.00 0.00 3.02
350 351 6.530019 TCATTGCTGAACTAGATACACTGA 57.470 37.500 0.00 0.00 0.00 3.41
363 364 4.130857 TCGTTGTTAGGTTCATTGCTGAA 58.869 39.130 0.00 0.00 39.07 3.02
364 365 3.734463 TCGTTGTTAGGTTCATTGCTGA 58.266 40.909 0.00 0.00 0.00 4.26
365 366 4.466828 CTTCGTTGTTAGGTTCATTGCTG 58.533 43.478 0.00 0.00 0.00 4.41
366 367 3.058224 GCTTCGTTGTTAGGTTCATTGCT 60.058 43.478 0.00 0.00 0.00 3.91
367 368 3.234386 GCTTCGTTGTTAGGTTCATTGC 58.766 45.455 0.00 0.00 0.00 3.56
368 369 3.666902 CGGCTTCGTTGTTAGGTTCATTG 60.667 47.826 0.00 0.00 0.00 2.82
369 370 2.482721 CGGCTTCGTTGTTAGGTTCATT 59.517 45.455 0.00 0.00 0.00 2.57
370 371 2.073816 CGGCTTCGTTGTTAGGTTCAT 58.926 47.619 0.00 0.00 0.00 2.57
371 372 1.202557 ACGGCTTCGTTGTTAGGTTCA 60.203 47.619 0.00 0.00 45.87 3.18
372 373 1.193874 CACGGCTTCGTTGTTAGGTTC 59.806 52.381 0.00 0.00 45.87 3.62
373 374 1.223187 CACGGCTTCGTTGTTAGGTT 58.777 50.000 0.00 0.00 45.87 3.50
374 375 0.601841 CCACGGCTTCGTTGTTAGGT 60.602 55.000 0.00 0.00 45.87 3.08
375 376 1.296056 CCCACGGCTTCGTTGTTAGG 61.296 60.000 0.00 0.00 45.87 2.69
376 377 0.601841 ACCCACGGCTTCGTTGTTAG 60.602 55.000 0.00 0.00 45.87 2.34
377 378 0.678395 TACCCACGGCTTCGTTGTTA 59.322 50.000 0.00 0.00 45.87 2.41
378 379 0.601841 CTACCCACGGCTTCGTTGTT 60.602 55.000 0.00 0.00 45.87 2.83
379 380 1.005394 CTACCCACGGCTTCGTTGT 60.005 57.895 0.00 0.00 45.87 3.32
380 381 2.388232 GCTACCCACGGCTTCGTTG 61.388 63.158 0.00 0.00 45.87 4.10
381 382 2.047560 GCTACCCACGGCTTCGTT 60.048 61.111 0.00 0.00 45.87 3.85
383 384 2.100631 CAAGCTACCCACGGCTTCG 61.101 63.158 0.00 0.00 45.48 3.79
384 385 1.745489 CCAAGCTACCCACGGCTTC 60.745 63.158 0.00 0.00 45.48 3.86
386 387 3.717294 CCCAAGCTACCCACGGCT 61.717 66.667 0.00 0.00 40.85 5.52
387 388 4.796495 CCCCAAGCTACCCACGGC 62.796 72.222 0.00 0.00 0.00 5.68
388 389 4.109675 CCCCCAAGCTACCCACGG 62.110 72.222 0.00 0.00 0.00 4.94
389 390 4.796495 GCCCCCAAGCTACCCACG 62.796 72.222 0.00 0.00 0.00 4.94
390 391 3.339093 AGCCCCCAAGCTACCCAC 61.339 66.667 0.00 0.00 42.70 4.61
391 392 3.015145 GAGCCCCCAAGCTACCCA 61.015 66.667 0.00 0.00 45.15 4.51
392 393 2.692741 AGAGCCCCCAAGCTACCC 60.693 66.667 0.00 0.00 45.15 3.69
393 394 1.562672 TTCAGAGCCCCCAAGCTACC 61.563 60.000 0.00 0.00 45.15 3.18
394 395 0.328258 TTTCAGAGCCCCCAAGCTAC 59.672 55.000 0.00 0.00 45.15 3.58
395 396 0.620556 CTTTCAGAGCCCCCAAGCTA 59.379 55.000 0.00 0.00 45.15 3.32
397 398 1.075659 ACTTTCAGAGCCCCCAAGC 59.924 57.895 0.00 0.00 0.00 4.01
398 399 0.401738 TCACTTTCAGAGCCCCCAAG 59.598 55.000 0.00 0.00 0.00 3.61
399 400 1.004745 GATCACTTTCAGAGCCCCCAA 59.995 52.381 0.00 0.00 0.00 4.12
400 401 0.620556 GATCACTTTCAGAGCCCCCA 59.379 55.000 0.00 0.00 0.00 4.96
401 402 0.915364 AGATCACTTTCAGAGCCCCC 59.085 55.000 0.00 0.00 0.00 5.40
402 403 1.472376 CGAGATCACTTTCAGAGCCCC 60.472 57.143 0.00 0.00 0.00 5.80
403 404 1.472376 CCGAGATCACTTTCAGAGCCC 60.472 57.143 0.00 0.00 0.00 5.19
404 405 1.472376 CCCGAGATCACTTTCAGAGCC 60.472 57.143 0.00 0.00 0.00 4.70
405 406 1.933247 CCCGAGATCACTTTCAGAGC 58.067 55.000 0.00 0.00 0.00 4.09
406 407 1.205655 TGCCCGAGATCACTTTCAGAG 59.794 52.381 0.00 0.00 0.00 3.35
407 408 1.266178 TGCCCGAGATCACTTTCAGA 58.734 50.000 0.00 0.00 0.00 3.27
408 409 2.099141 TTGCCCGAGATCACTTTCAG 57.901 50.000 0.00 0.00 0.00 3.02
409 410 2.559698 TTTGCCCGAGATCACTTTCA 57.440 45.000 0.00 0.00 0.00 2.69
410 411 3.561725 CCTATTTGCCCGAGATCACTTTC 59.438 47.826 0.00 0.00 0.00 2.62
411 412 3.199946 TCCTATTTGCCCGAGATCACTTT 59.800 43.478 0.00 0.00 0.00 2.66
432 433 5.123502 GGACTCGGTTAAAGAAAGGGAATTC 59.876 44.000 0.00 0.00 0.00 2.17
455 456 1.817099 GCATGGCTGTTCCTCTCGG 60.817 63.158 0.00 0.00 35.26 4.63
456 457 0.809241 GAGCATGGCTGTTCCTCTCG 60.809 60.000 0.00 0.00 39.88 4.04
457 458 0.540923 AGAGCATGGCTGTTCCTCTC 59.459 55.000 0.00 0.00 39.88 3.20
459 460 1.742268 GAAAGAGCATGGCTGTTCCTC 59.258 52.381 0.89 0.00 41.26 3.71
462 463 3.930634 AAAGAAAGAGCATGGCTGTTC 57.069 42.857 0.89 2.72 41.26 3.18
463 464 5.509670 GGTTAAAAGAAAGAGCATGGCTGTT 60.510 40.000 0.00 0.00 43.95 3.16
464 465 4.021981 GGTTAAAAGAAAGAGCATGGCTGT 60.022 41.667 0.00 0.00 39.88 4.40
467 468 3.190535 TCGGTTAAAAGAAAGAGCATGGC 59.809 43.478 0.00 0.00 0.00 4.40
480 481 2.619362 CCGGCACACTCGGTTAAAA 58.381 52.632 0.00 0.00 42.33 1.52
505 506 0.547229 ATGGGCTGCAATTTGGGGAA 60.547 50.000 0.50 0.00 0.00 3.97
506 507 0.547229 AATGGGCTGCAATTTGGGGA 60.547 50.000 0.50 0.00 0.00 4.81
507 508 0.328926 AAATGGGCTGCAATTTGGGG 59.671 50.000 10.57 0.00 0.00 4.96
508 509 1.679640 GGAAATGGGCTGCAATTTGGG 60.680 52.381 14.75 0.00 0.00 4.12
509 510 1.679640 GGGAAATGGGCTGCAATTTGG 60.680 52.381 14.75 0.00 0.00 3.28
512 529 0.614415 TCGGGAAATGGGCTGCAATT 60.614 50.000 0.50 0.00 0.00 2.32
516 533 0.536724 AATTTCGGGAAATGGGCTGC 59.463 50.000 7.37 0.00 40.57 5.25
530 547 3.691118 TGATACACAGGCTCAGCAATTTC 59.309 43.478 0.00 0.00 0.00 2.17
677 696 1.335597 GGGTGGAGTTTTGCTTTACGC 60.336 52.381 0.00 0.00 39.77 4.42
678 697 2.225727 GAGGGTGGAGTTTTGCTTTACG 59.774 50.000 0.00 0.00 0.00 3.18
679 698 2.557056 GGAGGGTGGAGTTTTGCTTTAC 59.443 50.000 0.00 0.00 0.00 2.01
680 699 2.445525 AGGAGGGTGGAGTTTTGCTTTA 59.554 45.455 0.00 0.00 0.00 1.85
681 700 1.217942 AGGAGGGTGGAGTTTTGCTTT 59.782 47.619 0.00 0.00 0.00 3.51
687 706 1.492993 GCTGGAGGAGGGTGGAGTTT 61.493 60.000 0.00 0.00 0.00 2.66
689 708 2.284995 GCTGGAGGAGGGTGGAGT 60.285 66.667 0.00 0.00 0.00 3.85
701 720 0.967887 CTGGAGAAGAGGACGCTGGA 60.968 60.000 0.00 0.00 0.00 3.86
702 721 1.254284 ACTGGAGAAGAGGACGCTGG 61.254 60.000 0.00 0.00 0.00 4.85
704 723 0.540830 ACACTGGAGAAGAGGACGCT 60.541 55.000 0.00 0.00 0.00 5.07
742 765 3.370103 CCAGCGGAGAAACTATTGGGTAA 60.370 47.826 0.00 0.00 0.00 2.85
813 836 3.821421 AACTATTGGGTAAGCTCGAGG 57.179 47.619 15.58 0.00 0.00 4.63
818 841 6.628644 AGAAGAGAAACTATTGGGTAAGCT 57.371 37.500 0.00 0.00 0.00 3.74
819 842 6.403746 GCAAGAAGAGAAACTATTGGGTAAGC 60.404 42.308 0.00 0.00 0.00 3.09
822 845 6.374417 AGCAAGAAGAGAAACTATTGGGTA 57.626 37.500 0.00 0.00 0.00 3.69
823 846 5.248380 AGCAAGAAGAGAAACTATTGGGT 57.752 39.130 0.00 0.00 0.00 4.51
827 850 5.335191 CGGCAAAGCAAGAAGAGAAACTATT 60.335 40.000 0.00 0.00 0.00 1.73
828 851 4.154918 CGGCAAAGCAAGAAGAGAAACTAT 59.845 41.667 0.00 0.00 0.00 2.12
829 852 3.498397 CGGCAAAGCAAGAAGAGAAACTA 59.502 43.478 0.00 0.00 0.00 2.24
830 853 2.291741 CGGCAAAGCAAGAAGAGAAACT 59.708 45.455 0.00 0.00 0.00 2.66
831 854 2.605580 CCGGCAAAGCAAGAAGAGAAAC 60.606 50.000 0.00 0.00 0.00 2.78
832 855 1.608590 CCGGCAAAGCAAGAAGAGAAA 59.391 47.619 0.00 0.00 0.00 2.52
946 984 4.371786 TGCTAAATTCAGCAGATACGGAG 58.628 43.478 0.00 0.00 46.41 4.63
998 1036 6.099845 ACCCTTACAGTTAAGTATCTCCATGG 59.900 42.308 4.97 4.97 33.92 3.66
1031 1069 2.311542 TGGGGATTATTGCTGGACAGTT 59.688 45.455 0.82 0.00 0.00 3.16
1045 1086 0.413037 TGTGGAAGGCAATGGGGATT 59.587 50.000 0.00 0.00 0.00 3.01
1046 1087 0.032813 CTGTGGAAGGCAATGGGGAT 60.033 55.000 0.00 0.00 0.00 3.85
1047 1088 1.383799 CTGTGGAAGGCAATGGGGA 59.616 57.895 0.00 0.00 0.00 4.81
1050 1091 0.890683 GGAACTGTGGAAGGCAATGG 59.109 55.000 0.00 0.00 0.00 3.16
1113 1154 9.787435 AGGTAAACTTTAGACACAATCATACAA 57.213 29.630 0.00 0.00 0.00 2.41
1237 1278 3.084039 TGATTGACTGGGAACTGATTGC 58.916 45.455 0.00 0.00 0.00 3.56
1322 1364 1.970640 GAATGGTTGGAGGGCACTTTT 59.029 47.619 0.00 0.00 0.00 2.27
1349 1391 7.709182 CACAGCATCATAAACATCCATTTTGAT 59.291 33.333 0.00 0.00 0.00 2.57
1386 1428 7.362920 GCACCACAGTTCTAATGATTACCATTT 60.363 37.037 0.00 0.00 42.55 2.32
1404 1446 7.820648 AGTTTTTCTATTGAATAGCACCACAG 58.179 34.615 7.33 0.00 32.85 3.66
1418 2395 6.547510 ACAGGTGCTGAAAGAGTTTTTCTATT 59.452 34.615 7.57 0.00 34.07 1.73
1423 2400 4.376340 CACAGGTGCTGAAAGAGTTTTT 57.624 40.909 0.00 0.00 34.07 1.94
1451 2428 4.479158 AGACAAAGGCATGGGAGTTAAAA 58.521 39.130 0.00 0.00 0.00 1.52
1485 2462 7.496591 ACAGCAAAAACTCATTTGTCAATCAAT 59.503 29.630 2.21 0.00 41.34 2.57
1486 2463 6.817641 ACAGCAAAAACTCATTTGTCAATCAA 59.182 30.769 2.21 0.00 41.34 2.57
1487 2464 6.339730 ACAGCAAAAACTCATTTGTCAATCA 58.660 32.000 2.21 0.00 41.34 2.57
1488 2465 6.833342 ACAGCAAAAACTCATTTGTCAATC 57.167 33.333 2.21 0.00 41.34 2.67
1490 2467 7.093354 TGTTACAGCAAAAACTCATTTGTCAA 58.907 30.769 2.21 0.00 41.34 3.18
1491 2468 6.625362 TGTTACAGCAAAAACTCATTTGTCA 58.375 32.000 2.21 0.00 41.34 3.58
1492 2469 7.698836 ATGTTACAGCAAAAACTCATTTGTC 57.301 32.000 0.00 0.00 41.34 3.18
1493 2470 9.593134 TTAATGTTACAGCAAAAACTCATTTGT 57.407 25.926 0.00 0.00 41.34 2.83
1497 2474 9.463443 GTCTTTAATGTTACAGCAAAAACTCAT 57.537 29.630 0.00 0.00 0.00 2.90
1498 2475 7.918562 GGTCTTTAATGTTACAGCAAAAACTCA 59.081 33.333 0.00 0.00 0.00 3.41
1499 2476 7.918562 TGGTCTTTAATGTTACAGCAAAAACTC 59.081 33.333 0.00 0.00 0.00 3.01
1500 2477 7.777095 TGGTCTTTAATGTTACAGCAAAAACT 58.223 30.769 0.00 0.00 0.00 2.66
1501 2478 7.995463 TGGTCTTTAATGTTACAGCAAAAAC 57.005 32.000 0.00 0.00 0.00 2.43
1502 2479 8.035394 TGTTGGTCTTTAATGTTACAGCAAAAA 58.965 29.630 0.00 0.00 0.00 1.94
1503 2480 7.489757 GTGTTGGTCTTTAATGTTACAGCAAAA 59.510 33.333 0.00 0.00 0.00 2.44
1504 2481 6.975772 GTGTTGGTCTTTAATGTTACAGCAAA 59.024 34.615 0.00 0.00 0.00 3.68
1527 2504 7.615757 TGGGTGTATAGAGATGATATACCTGTG 59.384 40.741 8.05 0.00 39.66 3.66
1531 2508 6.836527 AGCTGGGTGTATAGAGATGATATACC 59.163 42.308 0.00 0.00 39.24 2.73
1677 2663 9.625747 TGCCAGAATGTAATCACAAAGATAATA 57.374 29.630 0.00 0.00 38.42 0.98
1738 2724 3.902881 ACCAAAACCAAAATGACAGCA 57.097 38.095 0.00 0.00 0.00 4.41
1755 2741 6.206634 ACAAATTCTTTTCGAGCATTCTACCA 59.793 34.615 0.00 0.00 0.00 3.25
1835 2821 2.121291 TGCAAACACAGAGGTCACAA 57.879 45.000 0.00 0.00 0.00 3.33
1838 2831 1.024271 GCTTGCAAACACAGAGGTCA 58.976 50.000 0.00 0.00 0.00 4.02
1839 2832 1.024271 TGCTTGCAAACACAGAGGTC 58.976 50.000 0.00 0.00 0.00 3.85
1840 2833 1.696063 ATGCTTGCAAACACAGAGGT 58.304 45.000 4.33 0.00 0.00 3.85
1841 2834 2.223876 ACAATGCTTGCAAACACAGAGG 60.224 45.455 4.33 0.00 0.00 3.69
1842 2835 2.792674 CACAATGCTTGCAAACACAGAG 59.207 45.455 4.33 0.00 0.00 3.35
1843 2836 2.426381 TCACAATGCTTGCAAACACAGA 59.574 40.909 4.33 0.00 0.00 3.41
1844 2837 2.536803 GTCACAATGCTTGCAAACACAG 59.463 45.455 4.33 3.39 0.00 3.66
1845 2838 2.538437 GTCACAATGCTTGCAAACACA 58.462 42.857 4.33 1.66 0.00 3.72
1846 2839 1.860326 GGTCACAATGCTTGCAAACAC 59.140 47.619 4.33 0.00 0.00 3.32
1847 2840 1.535649 CGGTCACAATGCTTGCAAACA 60.536 47.619 4.77 4.77 0.00 2.83
1848 2841 1.130955 CGGTCACAATGCTTGCAAAC 58.869 50.000 0.00 0.00 0.00 2.93
1849 2842 0.031857 CCGGTCACAATGCTTGCAAA 59.968 50.000 0.00 0.00 0.00 3.68
1850 2843 1.106351 ACCGGTCACAATGCTTGCAA 61.106 50.000 0.00 0.00 0.00 4.08
1851 2844 1.106351 AACCGGTCACAATGCTTGCA 61.106 50.000 8.04 0.00 0.00 4.08
1852 2845 0.031994 AAACCGGTCACAATGCTTGC 59.968 50.000 8.04 0.00 0.00 4.01
1853 2846 3.848272 ATAAACCGGTCACAATGCTTG 57.152 42.857 8.04 0.00 0.00 4.01
1854 2847 4.585879 AGTATAAACCGGTCACAATGCTT 58.414 39.130 8.04 0.00 0.00 3.91
1855 2848 4.216411 AGTATAAACCGGTCACAATGCT 57.784 40.909 8.04 5.39 0.00 3.79
1856 2849 4.957759 AAGTATAAACCGGTCACAATGC 57.042 40.909 8.04 2.93 0.00 3.56
1857 2850 6.204108 GGGATAAGTATAAACCGGTCACAATG 59.796 42.308 8.04 0.00 0.00 2.82
1858 2851 6.100714 AGGGATAAGTATAAACCGGTCACAAT 59.899 38.462 8.04 1.55 0.00 2.71
1859 2852 5.426185 AGGGATAAGTATAAACCGGTCACAA 59.574 40.000 8.04 0.00 0.00 3.33
1860 2853 4.964262 AGGGATAAGTATAAACCGGTCACA 59.036 41.667 8.04 0.00 0.00 3.58
1861 2854 5.541953 AGGGATAAGTATAAACCGGTCAC 57.458 43.478 8.04 3.83 0.00 3.67
1862 2855 6.564557 AAAGGGATAAGTATAAACCGGTCA 57.435 37.500 8.04 0.00 0.00 4.02
1863 2856 6.825213 ACAAAAGGGATAAGTATAAACCGGTC 59.175 38.462 8.04 0.00 0.00 4.79
1864 2857 6.724351 ACAAAAGGGATAAGTATAAACCGGT 58.276 36.000 0.00 0.00 0.00 5.28
1865 2858 7.634671 AACAAAAGGGATAAGTATAAACCGG 57.365 36.000 0.00 0.00 0.00 5.28
1866 2859 9.992910 GTAAACAAAAGGGATAAGTATAAACCG 57.007 33.333 0.00 0.00 0.00 4.44
1895 2888 4.324254 GGTTGGGATCCTATCTGTGACAAA 60.324 45.833 12.58 0.00 0.00 2.83
2039 3032 5.189736 AGGAAAGGGCTTCTTTTTGTTCTTT 59.810 36.000 6.95 0.00 45.00 2.52
2069 3062 5.290400 GGAAGCTTGCAGCATCTTTTTAATC 59.710 40.000 13.73 0.00 45.56 1.75
2102 3095 1.738350 CTCATCTGTGCAAGCCTCTTG 59.262 52.381 0.00 2.40 0.00 3.02
2189 3182 5.997746 CACTTTCCAGTTATCAAGGACTTCA 59.002 40.000 0.00 0.00 0.00 3.02
2234 3227 7.691877 CCAAAAACTGTAACAACATTCAAAAGC 59.308 33.333 0.00 0.00 0.00 3.51
2238 3231 7.360438 GCAACCAAAAACTGTAACAACATTCAA 60.360 33.333 0.00 0.00 0.00 2.69
2257 3250 2.552599 TCGTAATCACCTGCAACCAA 57.447 45.000 0.00 0.00 0.00 3.67
2272 3265 9.031360 GCTTATGACACAGATAAGAATTTCGTA 57.969 33.333 0.00 0.00 36.03 3.43
2275 3268 8.887717 ACAGCTTATGACACAGATAAGAATTTC 58.112 33.333 0.00 0.00 36.03 2.17
2317 3310 3.621715 GCCTATACAAGGGTCTTGAAACG 59.378 47.826 13.74 0.00 46.65 3.60
2369 3362 9.424319 CGGACATTAATATACAAGATACTTGCT 57.576 33.333 10.78 2.82 0.00 3.91
2391 3387 9.490663 CATTTTCTACAAAATCATAAGACGGAC 57.509 33.333 0.00 0.00 39.75 4.79
2400 3396 6.855763 TGAGGGCATTTTCTACAAAATCAT 57.144 33.333 0.00 0.00 39.75 2.45
2506 3502 3.645212 ACATCGTTGATGGATCCTCTGAT 59.355 43.478 14.23 9.79 43.60 2.90
2571 3567 1.450312 GTCATGCTTGACCCTCCGG 60.450 63.158 19.37 0.00 45.45 5.14
2604 3600 3.159213 ACAATTGCTGGAATCCTGTCA 57.841 42.857 5.05 4.01 0.00 3.58
2650 3646 2.910544 TGTGGGATACTGTGGTAGGTT 58.089 47.619 0.00 0.00 0.00 3.50
2661 3657 0.464452 CCCGTCTCCTTGTGGGATAC 59.536 60.000 0.00 0.00 44.88 2.24
2811 3807 1.978617 GGTTGGCATGGGTGTCTGG 60.979 63.158 0.00 0.00 0.00 3.86
2815 3811 0.471591 ACATTGGTTGGCATGGGTGT 60.472 50.000 0.00 0.00 0.00 4.16
2821 3817 2.028748 GCTCTTTCACATTGGTTGGCAT 60.029 45.455 0.00 0.00 0.00 4.40
2827 3823 2.230508 CTGCATGCTCTTTCACATTGGT 59.769 45.455 20.33 0.00 0.00 3.67
2872 3868 1.603455 CAACACCCTGCCGGACATT 60.603 57.895 5.05 0.00 34.64 2.71
3105 4101 4.336713 GCTTTGCCATAGAAACTCCTTAGG 59.663 45.833 0.00 0.00 0.00 2.69
3138 4134 1.142185 CCTGCACACATAGCTCGACG 61.142 60.000 0.00 0.00 0.00 5.12
3176 4172 1.837439 TCATCATTGGCCGGTACTCTT 59.163 47.619 1.90 0.00 0.00 2.85
3311 4307 2.508928 CATCCGGGTGCGGGTAAT 59.491 61.111 0.00 0.00 0.00 1.89
3317 4313 4.552365 ATGAGGCATCCGGGTGCG 62.552 66.667 32.36 0.00 45.97 5.34
3318 4314 2.903855 CATGAGGCATCCGGGTGC 60.904 66.667 32.16 32.16 44.31 5.01
3319 4315 2.203252 CCATGAGGCATCCGGGTG 60.203 66.667 11.44 11.44 0.00 4.61
3412 4408 5.869344 TCAATTTTGAGAGTATGTCTGGTCG 59.131 40.000 0.00 0.00 34.71 4.79
3476 4472 1.000163 GAGCGAAGGCAGGATATTCGA 60.000 52.381 10.42 0.00 46.57 3.71
3528 4524 3.495193 CAAAGCAGTGATCAAATGGTCG 58.505 45.455 12.72 5.69 0.00 4.79
3606 4602 7.011950 TCTCACGCCATTAAACAAGGTTATATG 59.988 37.037 0.00 0.00 0.00 1.78
3803 4799 3.715628 ACAAGTTGCACAGCTTTTAGG 57.284 42.857 1.81 0.00 29.11 2.69
3825 4821 3.728292 CTGGGATTCTGGGGGCAGC 62.728 68.421 0.00 0.00 0.00 5.25
3945 4941 8.956426 TCTAACCATCCATTTGATACAACTTTC 58.044 33.333 0.00 0.00 30.56 2.62
3950 4946 6.767902 GCTCTCTAACCATCCATTTGATACAA 59.232 38.462 0.00 0.00 30.56 2.41
4039 5035 3.015327 GAGAAGAGCATGGAAGCATTGT 58.985 45.455 0.00 0.00 36.85 2.71
4095 5091 8.745590 GGGACATGGTTTATACAAAGTTGTAAT 58.254 33.333 7.91 1.05 45.74 1.89
4157 5268 8.755696 AAATAAATAAAAATTGTGCGAGCTCA 57.244 26.923 15.40 0.00 0.00 4.26


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.