Multiple sequence alignment - TraesCS2B01G438100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G438100 chr2B 100.000 6082 0 0 1 6082 630130459 630136540 0.000000e+00 11232.0
1 TraesCS2B01G438100 chr2B 91.031 669 57 1 5414 6082 631101849 631102514 0.000000e+00 900.0
2 TraesCS2B01G438100 chr2B 82.584 356 36 9 4001 4353 631100458 631100790 2.140000e-74 291.0
3 TraesCS2B01G438100 chr2B 83.884 242 26 8 5029 5264 631101396 631101630 1.030000e-52 219.0
4 TraesCS2B01G438100 chr2B 97.500 120 2 1 4351 4469 90192382 90192263 2.870000e-48 204.0
5 TraesCS2B01G438100 chr2B 92.958 142 3 6 4339 4475 666102924 666102785 3.720000e-47 200.0
6 TraesCS2B01G438100 chr2B 80.851 141 22 4 4900 5036 749803341 749803202 8.340000e-19 106.0
7 TraesCS2B01G438100 chr2B 91.045 67 5 1 3954 4020 631100379 631100444 8.400000e-14 89.8
8 TraesCS2B01G438100 chr2D 96.873 3550 90 11 817 4354 530254425 530257965 0.000000e+00 5921.0
9 TraesCS2B01G438100 chr2D 90.456 964 62 6 5140 6082 530258711 530259665 0.000000e+00 1243.0
10 TraesCS2B01G438100 chr2D 92.566 834 20 8 4467 5264 530257964 530258791 0.000000e+00 1158.0
11 TraesCS2B01G438100 chr2D 89.528 678 43 8 5405 6082 531263041 531263690 0.000000e+00 833.0
12 TraesCS2B01G438100 chr2D 91.992 487 30 4 319 800 530253957 530254439 0.000000e+00 675.0
13 TraesCS2B01G438100 chr2D 93.711 318 17 3 1 317 530200129 530200444 1.980000e-129 473.0
14 TraesCS2B01G438100 chr2D 84.298 242 27 7 5029 5264 531262549 531262785 6.130000e-55 226.0
15 TraesCS2B01G438100 chr2D 93.023 43 1 2 4856 4896 615384286 615384244 1.830000e-05 62.1
16 TraesCS2B01G438100 chr2A 96.919 3538 80 4 817 4354 675075705 675079213 0.000000e+00 5903.0
17 TraesCS2B01G438100 chr2A 90.656 1220 65 10 4894 6082 675079566 675080767 0.000000e+00 1576.0
18 TraesCS2B01G438100 chr2A 93.068 678 44 1 5405 6082 675746897 675747571 0.000000e+00 989.0
19 TraesCS2B01G438100 chr2A 96.516 287 6 1 4497 4783 675079232 675079514 7.140000e-129 472.0
20 TraesCS2B01G438100 chr2A 81.884 138 22 3 4900 5036 745392912 745392777 4.980000e-21 113.0
21 TraesCS2B01G438100 chr5B 96.800 125 2 2 4348 4471 79817996 79817873 2.220000e-49 207.0
22 TraesCS2B01G438100 chr6B 96.000 125 3 2 4348 4471 267021894 267021771 1.030000e-47 202.0
23 TraesCS2B01G438100 chr6B 75.926 378 67 17 429 794 672282059 672281694 8.100000e-39 172.0
24 TraesCS2B01G438100 chr3D 92.857 140 9 1 4353 4491 489175921 489175782 1.030000e-47 202.0
25 TraesCS2B01G438100 chr3A 96.694 121 3 1 4350 4469 702912259 702912139 3.720000e-47 200.0
26 TraesCS2B01G438100 chr5D 92.806 139 7 2 4333 4468 30459050 30459188 1.340000e-46 198.0
27 TraesCS2B01G438100 chrUn 94.574 129 3 3 4341 4468 88642456 88642581 4.810000e-46 196.0
28 TraesCS2B01G438100 chrUn 94.574 129 3 3 4341 4468 283732547 283732672 4.810000e-46 196.0
29 TraesCS2B01G438100 chr4A 85.263 190 17 7 4164 4353 551215028 551215206 1.040000e-42 185.0
30 TraesCS2B01G438100 chr4B 81.720 186 24 6 4168 4353 68670655 68670480 4.910000e-31 147.0
31 TraesCS2B01G438100 chr3B 84.821 112 10 3 5527 5632 732058601 732058711 8.340000e-19 106.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G438100 chr2B 630130459 630136540 6081 False 11232.000000 11232 100.00000 1 6082 1 chr2B.!!$F1 6081
1 TraesCS2B01G438100 chr2B 631100379 631102514 2135 False 374.950000 900 87.13600 3954 6082 4 chr2B.!!$F2 2128
2 TraesCS2B01G438100 chr2D 530253957 530259665 5708 False 2249.250000 5921 92.97175 319 6082 4 chr2D.!!$F2 5763
3 TraesCS2B01G438100 chr2D 531262549 531263690 1141 False 529.500000 833 86.91300 5029 6082 2 chr2D.!!$F3 1053
4 TraesCS2B01G438100 chr2A 675075705 675080767 5062 False 2650.333333 5903 94.69700 817 6082 3 chr2A.!!$F2 5265
5 TraesCS2B01G438100 chr2A 675746897 675747571 674 False 989.000000 989 93.06800 5405 6082 1 chr2A.!!$F1 677

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
144 145 0.031716 AGCTCCTCATGCTGACCCTA 60.032 55.000 0.00 0.00 39.56 3.53 F
287 288 0.179045 CATCCCGACCTTGATGGACC 60.179 60.000 0.00 0.00 39.71 4.46 F
290 291 0.179045 CCCGACCTTGATGGACCATC 60.179 60.000 25.21 25.21 40.88 3.51 F
291 292 0.179045 CCGACCTTGATGGACCATCC 60.179 60.000 28.01 13.47 39.87 3.51 F
324 325 0.246635 CATTTCTCCCTCGTCGGTGT 59.753 55.000 0.00 0.00 0.00 4.16 F
934 939 0.253044 ATTCGGGTCCCATGTGTCAG 59.747 55.000 9.12 0.00 0.00 3.51 F
2304 2336 1.250840 AACGCAGGGGATTTTGGAGC 61.251 55.000 0.00 0.00 0.00 4.70 F
2500 2532 0.111253 ACAGCAGGCCACTAGCTTTT 59.889 50.000 5.01 0.00 43.05 2.27 F
3241 3273 0.388649 GCGAGTTCGGCTCTCTTTCA 60.389 55.000 3.50 0.00 41.98 2.69 F
4060 4128 1.411977 TGGCCTTGTGAATGTGGTTTG 59.588 47.619 3.32 0.00 0.00 2.93 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1614 1622 0.042794 CAAAGCAAAGCAAAGCGCAC 60.043 50.000 11.47 0.00 46.13 5.34 R
1622 1630 0.107800 TGGCAAAGCAAAGCAAAGCA 60.108 45.000 0.00 0.00 0.00 3.91 R
1623 1631 1.196127 GATGGCAAAGCAAAGCAAAGC 59.804 47.619 0.00 0.00 0.00 3.51 R
1627 1635 1.619332 TGATGATGGCAAAGCAAAGCA 59.381 42.857 0.00 0.00 0.00 3.91 R
2173 2205 5.824904 ATAATCTTTGCGACTTCAGCATT 57.175 34.783 0.00 0.00 44.74 3.56 R
2389 2421 1.404391 GCATCAGCCCAGAAGACATTG 59.596 52.381 0.00 0.00 33.58 2.82 R
4288 4356 2.806244 CTCACTTGGGTTTCGGTTAGTG 59.194 50.000 0.00 0.00 35.51 2.74 R
4352 4420 0.032813 ATTTCCGGACGGAGGGAGTA 60.033 55.000 13.64 0.00 46.06 2.59 R
4355 4423 0.032813 AGTATTTCCGGACGGAGGGA 60.033 55.000 13.64 4.95 46.06 4.20 R
5997 6378 0.172578 CAGTACGTGCCGAGAATCCA 59.827 55.000 0.00 0.00 0.00 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 5.596836 TTTGTTAATGGCCTTCATGGATC 57.403 39.130 3.32 0.00 38.35 3.36
23 24 4.524802 TGTTAATGGCCTTCATGGATCT 57.475 40.909 3.32 0.00 38.35 2.75
24 25 4.870636 TGTTAATGGCCTTCATGGATCTT 58.129 39.130 3.32 0.00 38.35 2.40
25 26 5.271598 TGTTAATGGCCTTCATGGATCTTT 58.728 37.500 3.32 0.00 38.35 2.52
26 27 5.721000 TGTTAATGGCCTTCATGGATCTTTT 59.279 36.000 3.32 0.00 38.35 2.27
27 28 6.213195 TGTTAATGGCCTTCATGGATCTTTTT 59.787 34.615 3.32 0.00 38.35 1.94
46 47 5.890424 TTTTTATTCCTCGTTGCTAAGGG 57.110 39.130 0.00 0.00 33.21 3.95
47 48 4.829872 TTTATTCCTCGTTGCTAAGGGA 57.170 40.909 0.00 0.00 33.21 4.20
48 49 4.829872 TTATTCCTCGTTGCTAAGGGAA 57.170 40.909 0.00 0.00 39.84 3.97
49 50 3.713826 ATTCCTCGTTGCTAAGGGAAA 57.286 42.857 7.67 0.00 39.14 3.13
50 51 2.467566 TCCTCGTTGCTAAGGGAAAC 57.532 50.000 0.00 0.00 33.21 2.78
51 52 1.695242 TCCTCGTTGCTAAGGGAAACA 59.305 47.619 0.00 0.00 33.07 2.83
52 53 1.804748 CCTCGTTGCTAAGGGAAACAC 59.195 52.381 0.00 0.00 33.07 3.32
53 54 2.550208 CCTCGTTGCTAAGGGAAACACT 60.550 50.000 0.00 0.00 33.07 3.55
54 55 2.737252 CTCGTTGCTAAGGGAAACACTC 59.263 50.000 0.00 0.00 33.07 3.51
55 56 2.367567 TCGTTGCTAAGGGAAACACTCT 59.632 45.455 0.00 0.00 33.07 3.24
56 57 2.480419 CGTTGCTAAGGGAAACACTCTG 59.520 50.000 0.00 0.00 33.07 3.35
57 58 3.477530 GTTGCTAAGGGAAACACTCTGT 58.522 45.455 0.00 0.00 33.69 3.41
58 59 4.638304 GTTGCTAAGGGAAACACTCTGTA 58.362 43.478 0.00 0.00 33.69 2.74
59 60 4.967084 TGCTAAGGGAAACACTCTGTAA 57.033 40.909 0.00 0.00 0.00 2.41
60 61 5.499004 TGCTAAGGGAAACACTCTGTAAT 57.501 39.130 0.00 0.00 0.00 1.89
61 62 5.245531 TGCTAAGGGAAACACTCTGTAATG 58.754 41.667 0.00 0.00 0.00 1.90
62 63 5.012664 TGCTAAGGGAAACACTCTGTAATGA 59.987 40.000 0.00 0.00 0.00 2.57
63 64 5.938125 GCTAAGGGAAACACTCTGTAATGAA 59.062 40.000 0.00 0.00 0.00 2.57
64 65 6.599638 GCTAAGGGAAACACTCTGTAATGAAT 59.400 38.462 0.00 0.00 0.00 2.57
65 66 7.769044 GCTAAGGGAAACACTCTGTAATGAATA 59.231 37.037 0.00 0.00 0.00 1.75
66 67 9.838339 CTAAGGGAAACACTCTGTAATGAATAT 57.162 33.333 0.00 0.00 0.00 1.28
67 68 8.738645 AAGGGAAACACTCTGTAATGAATATC 57.261 34.615 0.00 0.00 0.00 1.63
68 69 7.861629 AGGGAAACACTCTGTAATGAATATCA 58.138 34.615 0.00 0.00 0.00 2.15
69 70 7.989741 AGGGAAACACTCTGTAATGAATATCAG 59.010 37.037 0.00 0.00 0.00 2.90
70 71 7.770897 GGGAAACACTCTGTAATGAATATCAGT 59.229 37.037 0.00 0.00 0.00 3.41
71 72 9.817809 GGAAACACTCTGTAATGAATATCAGTA 57.182 33.333 0.00 0.00 0.00 2.74
102 103 9.998106 AACTGTACTCATAATTTGACAAGTAGT 57.002 29.630 0.00 0.00 0.00 2.73
113 114 8.970691 AATTTGACAAGTAGTAAACATGATGC 57.029 30.769 0.00 0.00 31.22 3.91
114 115 7.503521 TTTGACAAGTAGTAAACATGATGCA 57.496 32.000 0.00 0.00 31.22 3.96
115 116 7.503521 TTGACAAGTAGTAAACATGATGCAA 57.496 32.000 0.00 0.00 31.22 4.08
116 117 7.503521 TGACAAGTAGTAAACATGATGCAAA 57.496 32.000 0.00 0.00 31.22 3.68
117 118 7.935520 TGACAAGTAGTAAACATGATGCAAAA 58.064 30.769 0.00 0.00 31.22 2.44
118 119 8.409371 TGACAAGTAGTAAACATGATGCAAAAA 58.591 29.630 0.00 0.00 31.22 1.94
119 120 8.574196 ACAAGTAGTAAACATGATGCAAAAAC 57.426 30.769 0.00 0.00 31.22 2.43
120 121 8.194104 ACAAGTAGTAAACATGATGCAAAAACA 58.806 29.630 0.00 0.00 31.22 2.83
121 122 9.195411 CAAGTAGTAAACATGATGCAAAAACAT 57.805 29.630 0.00 0.00 0.00 2.71
123 124 9.840427 AGTAGTAAACATGATGCAAAAACATAC 57.160 29.630 0.00 0.00 0.00 2.39
124 125 7.795431 AGTAAACATGATGCAAAAACATACG 57.205 32.000 0.00 0.00 0.00 3.06
125 126 7.589395 AGTAAACATGATGCAAAAACATACGA 58.411 30.769 0.00 0.00 0.00 3.43
126 127 6.932901 AAACATGATGCAAAAACATACGAG 57.067 33.333 0.00 0.00 0.00 4.18
127 128 4.414852 ACATGATGCAAAAACATACGAGC 58.585 39.130 0.00 0.00 0.00 5.03
128 129 4.156556 ACATGATGCAAAAACATACGAGCT 59.843 37.500 0.00 0.00 0.00 4.09
129 130 4.340894 TGATGCAAAAACATACGAGCTC 57.659 40.909 2.73 2.73 0.00 4.09
130 131 3.126858 TGATGCAAAAACATACGAGCTCC 59.873 43.478 8.47 0.00 0.00 4.70
131 132 2.778299 TGCAAAAACATACGAGCTCCT 58.222 42.857 8.47 0.00 0.00 3.69
132 133 2.742053 TGCAAAAACATACGAGCTCCTC 59.258 45.455 8.47 0.00 0.00 3.71
133 134 2.742053 GCAAAAACATACGAGCTCCTCA 59.258 45.455 8.47 0.00 0.00 3.86
134 135 3.375299 GCAAAAACATACGAGCTCCTCAT 59.625 43.478 8.47 0.00 0.00 2.90
135 136 4.728882 GCAAAAACATACGAGCTCCTCATG 60.729 45.833 8.47 11.21 0.00 3.07
136 137 2.231215 AACATACGAGCTCCTCATGC 57.769 50.000 8.47 0.00 0.00 4.06
137 138 1.407936 ACATACGAGCTCCTCATGCT 58.592 50.000 8.47 0.00 44.24 3.79
138 139 1.068281 ACATACGAGCTCCTCATGCTG 59.932 52.381 8.47 0.00 41.30 4.41
139 140 1.339291 CATACGAGCTCCTCATGCTGA 59.661 52.381 8.47 0.00 41.30 4.26
140 141 0.741326 TACGAGCTCCTCATGCTGAC 59.259 55.000 8.47 0.00 41.30 3.51
141 142 1.227205 CGAGCTCCTCATGCTGACC 60.227 63.158 8.47 0.00 41.30 4.02
142 143 1.145819 GAGCTCCTCATGCTGACCC 59.854 63.158 0.87 0.00 41.30 4.46
143 144 1.306825 AGCTCCTCATGCTGACCCT 60.307 57.895 0.00 0.00 39.56 4.34
144 145 0.031716 AGCTCCTCATGCTGACCCTA 60.032 55.000 0.00 0.00 39.56 3.53
145 146 0.833287 GCTCCTCATGCTGACCCTAA 59.167 55.000 0.00 0.00 0.00 2.69
146 147 1.474143 GCTCCTCATGCTGACCCTAAC 60.474 57.143 0.00 0.00 0.00 2.34
147 148 0.824109 TCCTCATGCTGACCCTAACG 59.176 55.000 0.00 0.00 0.00 3.18
148 149 0.537188 CCTCATGCTGACCCTAACGT 59.463 55.000 0.00 0.00 0.00 3.99
149 150 1.754803 CCTCATGCTGACCCTAACGTA 59.245 52.381 0.00 0.00 0.00 3.57
150 151 2.481449 CCTCATGCTGACCCTAACGTAC 60.481 54.545 0.00 0.00 0.00 3.67
151 152 1.133598 TCATGCTGACCCTAACGTACG 59.866 52.381 15.01 15.01 0.00 3.67
152 153 0.458669 ATGCTGACCCTAACGTACGG 59.541 55.000 21.06 3.38 0.00 4.02
153 154 1.140375 GCTGACCCTAACGTACGGG 59.860 63.158 21.06 17.92 46.26 5.28
159 160 2.293677 CCCTAACGTACGGGTTAACC 57.706 55.000 21.06 16.85 35.65 2.85
168 169 3.654143 GGGTTAACCGGCACCCCT 61.654 66.667 21.78 0.00 46.50 4.79
169 170 2.437449 GGTTAACCGGCACCCCTT 59.563 61.111 9.34 0.00 0.00 3.95
170 171 1.684629 GGTTAACCGGCACCCCTTA 59.315 57.895 9.34 0.00 0.00 2.69
171 172 0.256752 GGTTAACCGGCACCCCTTAT 59.743 55.000 9.34 0.00 0.00 1.73
172 173 1.490069 GGTTAACCGGCACCCCTTATA 59.510 52.381 9.34 0.00 0.00 0.98
173 174 2.107031 GGTTAACCGGCACCCCTTATAT 59.893 50.000 9.34 0.00 0.00 0.86
174 175 3.405831 GTTAACCGGCACCCCTTATATC 58.594 50.000 0.00 0.00 0.00 1.63
175 176 0.769247 AACCGGCACCCCTTATATCC 59.231 55.000 0.00 0.00 0.00 2.59
176 177 0.400815 ACCGGCACCCCTTATATCCA 60.401 55.000 0.00 0.00 0.00 3.41
177 178 0.324943 CCGGCACCCCTTATATCCAG 59.675 60.000 0.00 0.00 0.00 3.86
178 179 1.056660 CGGCACCCCTTATATCCAGT 58.943 55.000 0.00 0.00 0.00 4.00
179 180 1.002087 CGGCACCCCTTATATCCAGTC 59.998 57.143 0.00 0.00 0.00 3.51
180 181 2.054799 GGCACCCCTTATATCCAGTCA 58.945 52.381 0.00 0.00 0.00 3.41
181 182 2.644798 GGCACCCCTTATATCCAGTCAT 59.355 50.000 0.00 0.00 0.00 3.06
182 183 3.844211 GGCACCCCTTATATCCAGTCATA 59.156 47.826 0.00 0.00 0.00 2.15
183 184 4.475016 GGCACCCCTTATATCCAGTCATAT 59.525 45.833 0.00 0.00 0.00 1.78
184 185 5.396884 GGCACCCCTTATATCCAGTCATATC 60.397 48.000 0.00 0.00 0.00 1.63
185 186 5.426833 GCACCCCTTATATCCAGTCATATCT 59.573 44.000 0.00 0.00 0.00 1.98
186 187 6.611642 GCACCCCTTATATCCAGTCATATCTA 59.388 42.308 0.00 0.00 0.00 1.98
187 188 7.201956 GCACCCCTTATATCCAGTCATATCTAG 60.202 44.444 0.00 0.00 0.00 2.43
188 189 7.288852 CACCCCTTATATCCAGTCATATCTAGG 59.711 44.444 0.00 0.00 0.00 3.02
189 190 7.188454 ACCCCTTATATCCAGTCATATCTAGGA 59.812 40.741 0.00 0.00 29.70 2.94
190 191 7.507616 CCCCTTATATCCAGTCATATCTAGGAC 59.492 44.444 0.00 0.00 37.27 3.85
191 192 8.061920 CCCTTATATCCAGTCATATCTAGGACA 58.938 40.741 4.99 0.00 39.29 4.02
192 193 9.130661 CCTTATATCCAGTCATATCTAGGACAG 57.869 40.741 4.99 0.00 39.29 3.51
193 194 9.913310 CTTATATCCAGTCATATCTAGGACAGA 57.087 37.037 4.99 2.07 39.29 3.41
204 205 3.511477 TCTAGGACAGATATGGGAAGGC 58.489 50.000 0.00 0.00 0.00 4.35
205 206 2.503869 AGGACAGATATGGGAAGGCT 57.496 50.000 0.00 0.00 0.00 4.58
206 207 2.334023 AGGACAGATATGGGAAGGCTC 58.666 52.381 0.00 0.00 0.00 4.70
207 208 1.001406 GGACAGATATGGGAAGGCTCG 59.999 57.143 0.00 0.00 0.00 5.03
208 209 1.001406 GACAGATATGGGAAGGCTCGG 59.999 57.143 0.00 0.00 0.00 4.63
209 210 0.322975 CAGATATGGGAAGGCTCGGG 59.677 60.000 0.00 0.00 0.00 5.14
210 211 1.003233 GATATGGGAAGGCTCGGGC 60.003 63.158 0.00 0.00 37.82 6.13
211 212 2.788191 GATATGGGAAGGCTCGGGCG 62.788 65.000 0.00 0.00 39.81 6.13
228 229 2.659244 GTGTCCGCCACGTCGAAA 60.659 61.111 0.00 0.00 33.61 3.46
229 230 2.106534 TGTCCGCCACGTCGAAAA 59.893 55.556 0.00 0.00 0.00 2.29
230 231 2.239124 TGTCCGCCACGTCGAAAAC 61.239 57.895 0.00 0.00 0.00 2.43
241 242 2.288961 GTCGAAAACGATAGGCTGGA 57.711 50.000 0.00 0.00 43.77 3.86
242 243 1.925185 GTCGAAAACGATAGGCTGGAC 59.075 52.381 0.00 0.00 43.77 4.02
243 244 1.134907 TCGAAAACGATAGGCTGGACC 60.135 52.381 0.00 0.00 43.77 4.46
244 245 1.404986 CGAAAACGATAGGCTGGACCA 60.405 52.381 0.00 0.00 43.14 4.02
245 246 2.706890 GAAAACGATAGGCTGGACCAA 58.293 47.619 0.00 0.00 43.14 3.67
246 247 2.109425 AAACGATAGGCTGGACCAAC 57.891 50.000 0.00 0.00 43.14 3.77
247 248 0.252197 AACGATAGGCTGGACCAACC 59.748 55.000 5.72 5.72 43.14 3.77
248 249 0.907704 ACGATAGGCTGGACCAACCA 60.908 55.000 16.37 2.89 44.34 3.67
249 250 2.452294 ACGATAGGCTGGACCAACCAA 61.452 52.381 16.37 0.00 45.39 3.67
250 251 3.947384 ACGATAGGCTGGACCAACCAAA 61.947 50.000 16.37 4.18 45.39 3.28
251 252 5.399431 ACGATAGGCTGGACCAACCAAAA 62.399 47.826 16.37 1.67 45.39 2.44
252 253 6.813813 ACGATAGGCTGGACCAACCAAAAA 62.814 45.833 16.37 0.00 45.39 1.94
258 259 2.911484 TGGACCAACCAAAAATTGCAC 58.089 42.857 0.00 0.00 46.75 4.57
259 260 2.217750 GGACCAACCAAAAATTGCACC 58.782 47.619 0.00 0.00 38.79 5.01
260 261 2.420687 GGACCAACCAAAAATTGCACCA 60.421 45.455 0.00 0.00 38.79 4.17
261 262 3.274288 GACCAACCAAAAATTGCACCAA 58.726 40.909 0.00 0.00 0.00 3.67
262 263 3.690460 ACCAACCAAAAATTGCACCAAA 58.310 36.364 0.00 0.00 0.00 3.28
263 264 4.276642 ACCAACCAAAAATTGCACCAAAT 58.723 34.783 0.00 0.00 0.00 2.32
264 265 4.337836 ACCAACCAAAAATTGCACCAAATC 59.662 37.500 0.00 0.00 0.00 2.17
265 266 4.261530 CCAACCAAAAATTGCACCAAATCC 60.262 41.667 0.00 0.00 0.00 3.01
266 267 3.485394 ACCAAAAATTGCACCAAATCCC 58.515 40.909 0.00 0.00 0.00 3.85
267 268 2.819019 CCAAAAATTGCACCAAATCCCC 59.181 45.455 0.00 0.00 0.00 4.81
268 269 2.819019 CAAAAATTGCACCAAATCCCCC 59.181 45.455 0.00 0.00 0.00 5.40
269 270 1.739750 AAATTGCACCAAATCCCCCA 58.260 45.000 0.00 0.00 0.00 4.96
270 271 1.969713 AATTGCACCAAATCCCCCAT 58.030 45.000 0.00 0.00 0.00 4.00
271 272 1.499368 ATTGCACCAAATCCCCCATC 58.501 50.000 0.00 0.00 0.00 3.51
272 273 0.617249 TTGCACCAAATCCCCCATCC 60.617 55.000 0.00 0.00 0.00 3.51
273 274 1.762063 GCACCAAATCCCCCATCCC 60.762 63.158 0.00 0.00 0.00 3.85
274 275 1.455587 CACCAAATCCCCCATCCCG 60.456 63.158 0.00 0.00 0.00 5.14
275 276 1.621205 ACCAAATCCCCCATCCCGA 60.621 57.895 0.00 0.00 0.00 5.14
276 277 1.152756 CCAAATCCCCCATCCCGAC 60.153 63.158 0.00 0.00 0.00 4.79
277 278 1.152756 CAAATCCCCCATCCCGACC 60.153 63.158 0.00 0.00 0.00 4.79
278 279 1.308746 AAATCCCCCATCCCGACCT 60.309 57.895 0.00 0.00 0.00 3.85
279 280 0.924226 AAATCCCCCATCCCGACCTT 60.924 55.000 0.00 0.00 0.00 3.50
280 281 1.645402 AATCCCCCATCCCGACCTTG 61.645 60.000 0.00 0.00 0.00 3.61
281 282 2.561378 ATCCCCCATCCCGACCTTGA 62.561 60.000 0.00 0.00 0.00 3.02
282 283 2.078665 CCCCCATCCCGACCTTGAT 61.079 63.158 0.00 0.00 0.00 2.57
283 284 1.149174 CCCCATCCCGACCTTGATG 59.851 63.158 0.00 0.00 38.45 3.07
286 287 3.386543 CATCCCGACCTTGATGGAC 57.613 57.895 0.00 0.00 39.71 4.02
287 288 0.179045 CATCCCGACCTTGATGGACC 60.179 60.000 0.00 0.00 39.71 4.46
288 289 0.620410 ATCCCGACCTTGATGGACCA 60.620 55.000 0.00 0.00 39.71 4.02
289 290 0.620410 TCCCGACCTTGATGGACCAT 60.620 55.000 6.71 6.71 39.71 3.55
290 291 0.179045 CCCGACCTTGATGGACCATC 60.179 60.000 25.21 25.21 40.88 3.51
291 292 0.179045 CCGACCTTGATGGACCATCC 60.179 60.000 28.01 13.47 39.87 3.51
303 304 3.968265 TGGACCATCCATTTTTCTCTCC 58.032 45.455 0.00 0.00 42.67 3.71
304 305 3.333381 TGGACCATCCATTTTTCTCTCCA 59.667 43.478 0.00 0.00 42.67 3.86
305 306 3.696548 GGACCATCCATTTTTCTCTCCAC 59.303 47.826 0.00 0.00 36.28 4.02
306 307 4.335416 GACCATCCATTTTTCTCTCCACA 58.665 43.478 0.00 0.00 0.00 4.17
307 308 4.939255 ACCATCCATTTTTCTCTCCACAT 58.061 39.130 0.00 0.00 0.00 3.21
308 309 5.336102 ACCATCCATTTTTCTCTCCACATT 58.664 37.500 0.00 0.00 0.00 2.71
309 310 5.781818 ACCATCCATTTTTCTCTCCACATTT 59.218 36.000 0.00 0.00 0.00 2.32
310 311 6.071165 ACCATCCATTTTTCTCTCCACATTTC 60.071 38.462 0.00 0.00 0.00 2.17
311 312 6.154021 CCATCCATTTTTCTCTCCACATTTCT 59.846 38.462 0.00 0.00 0.00 2.52
312 313 6.824305 TCCATTTTTCTCTCCACATTTCTC 57.176 37.500 0.00 0.00 0.00 2.87
313 314 5.711976 TCCATTTTTCTCTCCACATTTCTCC 59.288 40.000 0.00 0.00 0.00 3.71
314 315 5.105595 CCATTTTTCTCTCCACATTTCTCCC 60.106 44.000 0.00 0.00 0.00 4.30
315 316 5.324832 TTTTTCTCTCCACATTTCTCCCT 57.675 39.130 0.00 0.00 0.00 4.20
316 317 4.559862 TTTCTCTCCACATTTCTCCCTC 57.440 45.455 0.00 0.00 0.00 4.30
317 318 2.103373 TCTCTCCACATTTCTCCCTCG 58.897 52.381 0.00 0.00 0.00 4.63
318 319 1.827969 CTCTCCACATTTCTCCCTCGT 59.172 52.381 0.00 0.00 0.00 4.18
319 320 1.825474 TCTCCACATTTCTCCCTCGTC 59.175 52.381 0.00 0.00 0.00 4.20
320 321 0.530744 TCCACATTTCTCCCTCGTCG 59.469 55.000 0.00 0.00 0.00 5.12
324 325 0.246635 CATTTCTCCCTCGTCGGTGT 59.753 55.000 0.00 0.00 0.00 4.16
332 333 3.530910 CTCGTCGGTGTTGGCCCTT 62.531 63.158 0.00 0.00 0.00 3.95
371 372 3.126225 GAGTCCTCGGCGTCGTCT 61.126 66.667 10.18 4.03 37.69 4.18
434 435 3.229156 ATTGTCGTCGGGCCGAACA 62.229 57.895 32.91 28.49 38.80 3.18
446 447 1.705727 CCGAACATTGTCGCGGTAC 59.294 57.895 17.91 0.00 39.74 3.34
473 474 1.025113 TACTCTCGGAGTGCACCTCG 61.025 60.000 14.63 17.51 43.30 4.63
572 573 1.849039 CTCAAATGAGGGGGATGGACT 59.151 52.381 2.38 0.00 38.48 3.85
574 575 1.565759 CAAATGAGGGGGATGGACTCA 59.434 52.381 0.00 0.00 44.44 3.41
587 588 0.461548 GGACTCACGGAGCATGATGA 59.538 55.000 0.00 0.00 32.04 2.92
633 634 2.493713 ATCGGATTCGGACGAAGAAG 57.506 50.000 12.88 6.43 42.88 2.85
664 665 2.294979 GATGAGCATGAGCATCCAACA 58.705 47.619 14.06 0.00 45.49 3.33
674 675 4.346730 TGAGCATCCAACAGGAAATGAAT 58.653 39.130 0.00 0.00 34.49 2.57
676 677 4.607239 AGCATCCAACAGGAAATGAATCT 58.393 39.130 0.00 0.00 34.49 2.40
678 679 4.400251 GCATCCAACAGGAAATGAATCTGA 59.600 41.667 0.00 0.00 34.49 3.27
684 685 4.338879 ACAGGAAATGAATCTGAAGGTGG 58.661 43.478 0.00 0.00 33.19 4.61
724 725 7.524717 TTAAGGGTTCAATCAAAGGAAGAAG 57.475 36.000 0.00 0.00 0.00 2.85
730 731 6.263168 GGTTCAATCAAAGGAAGAAGAGTTCA 59.737 38.462 0.00 0.00 0.00 3.18
731 732 7.201821 GGTTCAATCAAAGGAAGAAGAGTTCAA 60.202 37.037 0.00 0.00 0.00 2.69
732 733 7.264373 TCAATCAAAGGAAGAAGAGTTCAAC 57.736 36.000 0.00 0.00 0.00 3.18
734 735 7.503566 TCAATCAAAGGAAGAAGAGTTCAACAT 59.496 33.333 0.00 0.00 0.00 2.71
735 736 8.786898 CAATCAAAGGAAGAAGAGTTCAACATA 58.213 33.333 0.00 0.00 0.00 2.29
736 737 7.969536 TCAAAGGAAGAAGAGTTCAACATAG 57.030 36.000 0.00 0.00 0.00 2.23
755 760 2.125753 GACTCTGGAGCACGGCTG 60.126 66.667 2.98 0.00 39.88 4.85
767 772 0.737715 CACGGCTGCTCTACAAGGAC 60.738 60.000 0.00 0.00 0.00 3.85
791 796 8.635765 ACTACTTTGATCATGTACCAACAATT 57.364 30.769 0.00 0.00 39.58 2.32
793 798 6.924111 ACTTTGATCATGTACCAACAATTCC 58.076 36.000 0.00 0.00 39.58 3.01
795 800 7.888021 ACTTTGATCATGTACCAACAATTCCTA 59.112 33.333 0.00 0.00 39.58 2.94
796 801 8.642935 TTTGATCATGTACCAACAATTCCTAA 57.357 30.769 0.00 0.00 39.58 2.69
797 802 8.821686 TTGATCATGTACCAACAATTCCTAAT 57.178 30.769 0.00 0.00 39.58 1.73
798 803 8.224389 TGATCATGTACCAACAATTCCTAATG 57.776 34.615 0.00 0.00 39.58 1.90
799 804 8.052141 TGATCATGTACCAACAATTCCTAATGA 58.948 33.333 0.00 0.00 39.58 2.57
800 805 7.624360 TCATGTACCAACAATTCCTAATGAC 57.376 36.000 0.00 0.00 39.58 3.06
801 806 7.171653 TCATGTACCAACAATTCCTAATGACA 58.828 34.615 0.00 0.00 39.58 3.58
802 807 7.833682 TCATGTACCAACAATTCCTAATGACAT 59.166 33.333 0.00 0.00 39.58 3.06
803 808 7.624360 TGTACCAACAATTCCTAATGACATC 57.376 36.000 0.00 0.00 30.91 3.06
804 809 5.818136 ACCAACAATTCCTAATGACATCG 57.182 39.130 0.00 0.00 0.00 3.84
805 810 4.096382 ACCAACAATTCCTAATGACATCGC 59.904 41.667 0.00 0.00 0.00 4.58
806 811 4.096231 CCAACAATTCCTAATGACATCGCA 59.904 41.667 0.00 0.00 0.00 5.10
807 812 5.392919 CCAACAATTCCTAATGACATCGCAA 60.393 40.000 0.00 0.00 0.00 4.85
808 813 5.895636 ACAATTCCTAATGACATCGCAAA 57.104 34.783 0.00 0.00 0.00 3.68
809 814 6.266168 ACAATTCCTAATGACATCGCAAAA 57.734 33.333 0.00 0.00 0.00 2.44
810 815 6.686630 ACAATTCCTAATGACATCGCAAAAA 58.313 32.000 0.00 0.00 0.00 1.94
850 855 2.399396 ATCGTTTTGTGGACGCTTTG 57.601 45.000 0.00 0.00 40.16 2.77
893 898 2.660552 CGTCCCACGTGTCACACC 60.661 66.667 15.65 0.00 36.74 4.16
910 915 1.995626 CCCTTCTGGTCCGGGACAT 60.996 63.158 27.32 0.00 40.55 3.06
927 932 3.023832 GACATTGAAATTCGGGTCCCAT 58.976 45.455 9.12 0.00 0.00 4.00
934 939 0.253044 ATTCGGGTCCCATGTGTCAG 59.747 55.000 9.12 0.00 0.00 3.51
1405 1412 2.028020 GGGATTCTTTGTGACGAGGTCT 60.028 50.000 0.00 0.00 33.15 3.85
1451 1459 4.394729 GGAGGTCATGGTTGTCAACTTAA 58.605 43.478 15.17 2.66 0.00 1.85
1612 1620 2.186125 GGGTAGTGTAGCGGTGCC 59.814 66.667 0.00 0.00 0.00 5.01
1613 1621 2.202703 GGTAGTGTAGCGGTGCCG 60.203 66.667 6.22 6.22 43.09 5.69
1614 1622 2.202703 GTAGTGTAGCGGTGCCGG 60.203 66.667 12.82 0.00 40.19 6.13
1627 1635 4.645921 GCCGGTGCGCTTTGCTTT 62.646 61.111 9.73 0.00 46.63 3.51
1661 1693 6.347696 TGCCATCATCAAAGTTTCTGTTTTT 58.652 32.000 0.00 0.00 0.00 1.94
1730 1762 4.145365 AGTATGCGGGTGCTTGTTTATA 57.855 40.909 0.00 0.00 43.34 0.98
1731 1763 3.875134 AGTATGCGGGTGCTTGTTTATAC 59.125 43.478 0.00 0.00 43.34 1.47
1732 1764 2.483014 TGCGGGTGCTTGTTTATACT 57.517 45.000 0.00 0.00 43.34 2.12
2049 2081 4.039609 AAAGAATTTGCCCAAGAGACCTTG 59.960 41.667 0.00 0.00 42.49 3.61
2299 2331 4.170468 AGATATGAACGCAGGGGATTTT 57.830 40.909 0.00 0.00 0.00 1.82
2300 2332 3.885297 AGATATGAACGCAGGGGATTTTG 59.115 43.478 0.00 0.00 0.00 2.44
2304 2336 1.250840 AACGCAGGGGATTTTGGAGC 61.251 55.000 0.00 0.00 0.00 4.70
2389 2421 3.256558 GGATGAAAATGACAAAGCTGCC 58.743 45.455 0.00 0.00 0.00 4.85
2500 2532 0.111253 ACAGCAGGCCACTAGCTTTT 59.889 50.000 5.01 0.00 43.05 2.27
2501 2533 1.351017 ACAGCAGGCCACTAGCTTTTA 59.649 47.619 5.01 0.00 43.05 1.52
2733 2765 2.229784 GGCAAATATACCAGGATGCAGC 59.770 50.000 0.00 0.00 35.57 5.25
2791 2823 7.414222 AGAATTCACACATGATTTTAGCCAT 57.586 32.000 8.44 0.00 33.85 4.40
2898 2930 8.638565 CAAATTGTTAAATGAGCTTTACGAAGG 58.361 33.333 0.00 0.00 33.34 3.46
3019 3051 2.260844 TGGGTTGTGAGAAAGAGCTG 57.739 50.000 0.00 0.00 0.00 4.24
3241 3273 0.388649 GCGAGTTCGGCTCTCTTTCA 60.389 55.000 3.50 0.00 41.98 2.69
3696 3728 4.323553 AGGATCAGTTAACTCGTATGGC 57.676 45.455 4.77 0.00 0.00 4.40
3745 3777 3.791245 CAGTGAGGCTCAGAAATCTACC 58.209 50.000 19.38 2.40 0.00 3.18
3816 3848 6.986231 ACCAATAAAAGGCAGAAACAAAGAAG 59.014 34.615 0.00 0.00 0.00 2.85
4029 4094 5.487433 TCAACATGAACACACGATTCCTAT 58.513 37.500 0.00 0.00 0.00 2.57
4060 4128 1.411977 TGGCCTTGTGAATGTGGTTTG 59.588 47.619 3.32 0.00 0.00 2.93
4102 4170 3.463329 AGGGACATTATGTACTTGGCCAT 59.537 43.478 6.09 0.00 40.56 4.40
4112 4180 5.244189 TGTACTTGGCCATAACTTTGGTA 57.756 39.130 6.09 0.00 39.11 3.25
4150 4218 3.562141 ACATTCGTGACGATTTGAACCAA 59.438 39.130 20.44 0.00 35.23 3.67
4255 4323 1.542492 CAGGCTTCTGCAGTTCCAAT 58.458 50.000 14.67 0.00 41.91 3.16
4340 4408 8.690203 TGGAATCAGTGATTGTAAAAGAGAAA 57.310 30.769 22.93 0.00 31.89 2.52
4358 4426 8.794335 AAGAGAAACTTATGTTTGATACTCCC 57.206 34.615 11.15 0.00 45.36 4.30
4359 4427 8.152023 AGAGAAACTTATGTTTGATACTCCCT 57.848 34.615 11.15 0.54 45.36 4.20
4360 4428 8.261522 AGAGAAACTTATGTTTGATACTCCCTC 58.738 37.037 11.15 8.65 45.36 4.30
4361 4429 7.339482 AGAAACTTATGTTTGATACTCCCTCC 58.661 38.462 11.15 0.00 45.36 4.30
4362 4430 5.277857 ACTTATGTTTGATACTCCCTCCG 57.722 43.478 0.00 0.00 0.00 4.63
4363 4431 4.715297 ACTTATGTTTGATACTCCCTCCGT 59.285 41.667 0.00 0.00 0.00 4.69
4364 4432 3.821421 ATGTTTGATACTCCCTCCGTC 57.179 47.619 0.00 0.00 0.00 4.79
4365 4433 1.829222 TGTTTGATACTCCCTCCGTCC 59.171 52.381 0.00 0.00 0.00 4.79
4366 4434 1.108776 TTTGATACTCCCTCCGTCCG 58.891 55.000 0.00 0.00 0.00 4.79
4367 4435 0.754217 TTGATACTCCCTCCGTCCGG 60.754 60.000 0.00 0.00 0.00 5.14
4368 4436 1.150081 GATACTCCCTCCGTCCGGA 59.850 63.158 0.00 0.00 42.90 5.14
4369 4437 0.466922 GATACTCCCTCCGTCCGGAA 60.467 60.000 5.23 0.00 44.66 4.30
4370 4438 0.032813 ATACTCCCTCCGTCCGGAAA 60.033 55.000 5.23 0.00 44.66 3.13
4371 4439 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.000 5.23 0.00 44.66 2.17
4372 4440 0.032813 ACTCCCTCCGTCCGGAAATA 60.033 55.000 5.23 0.00 44.66 1.40
4373 4441 0.388294 CTCCCTCCGTCCGGAAATAC 59.612 60.000 5.23 0.00 44.66 1.89
4374 4442 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.00 44.66 2.12
4375 4443 0.828677 CCCTCCGTCCGGAAATACTT 59.171 55.000 5.23 0.00 44.66 2.24
4376 4444 1.472728 CCCTCCGTCCGGAAATACTTG 60.473 57.143 5.23 0.00 44.66 3.16
4377 4445 1.206371 CCTCCGTCCGGAAATACTTGT 59.794 52.381 5.23 0.00 44.66 3.16
4378 4446 2.537401 CTCCGTCCGGAAATACTTGTC 58.463 52.381 5.23 0.00 44.66 3.18
4379 4447 1.135315 TCCGTCCGGAAATACTTGTCG 60.135 52.381 5.23 1.25 42.05 4.35
4380 4448 1.135315 CCGTCCGGAAATACTTGTCGA 60.135 52.381 5.23 0.00 37.50 4.20
4381 4449 2.598589 CGTCCGGAAATACTTGTCGAA 58.401 47.619 5.23 0.00 0.00 3.71
4382 4450 2.597305 CGTCCGGAAATACTTGTCGAAG 59.403 50.000 5.23 0.00 35.07 3.79
4383 4451 3.671433 CGTCCGGAAATACTTGTCGAAGA 60.671 47.826 5.23 0.00 32.98 2.87
4384 4452 4.240096 GTCCGGAAATACTTGTCGAAGAA 58.760 43.478 5.23 0.00 39.69 2.52
4385 4453 4.687483 GTCCGGAAATACTTGTCGAAGAAA 59.313 41.667 5.23 0.00 39.69 2.52
4386 4454 5.350640 GTCCGGAAATACTTGTCGAAGAAAT 59.649 40.000 5.23 0.00 39.69 2.17
4387 4455 5.350365 TCCGGAAATACTTGTCGAAGAAATG 59.650 40.000 0.00 0.00 39.69 2.32
4388 4456 5.022021 CGGAAATACTTGTCGAAGAAATGC 58.978 41.667 0.00 0.00 39.69 3.56
4389 4457 5.390461 CGGAAATACTTGTCGAAGAAATGCA 60.390 40.000 0.00 0.00 39.69 3.96
4390 4458 6.555315 GGAAATACTTGTCGAAGAAATGCAT 58.445 36.000 0.00 0.00 39.69 3.96
4391 4459 7.465379 CGGAAATACTTGTCGAAGAAATGCATA 60.465 37.037 0.00 0.00 39.69 3.14
4392 4460 8.181573 GGAAATACTTGTCGAAGAAATGCATAA 58.818 33.333 0.00 0.00 39.69 1.90
4393 4461 9.554724 GAAATACTTGTCGAAGAAATGCATAAA 57.445 29.630 0.00 0.00 39.69 1.40
4394 4462 9.906660 AAATACTTGTCGAAGAAATGCATAAAA 57.093 25.926 0.00 0.00 39.69 1.52
4395 4463 9.906660 AATACTTGTCGAAGAAATGCATAAAAA 57.093 25.926 0.00 0.00 39.69 1.94
4397 4465 8.231304 ACTTGTCGAAGAAATGCATAAAAATG 57.769 30.769 0.00 0.00 39.69 2.32
4398 4466 8.081633 ACTTGTCGAAGAAATGCATAAAAATGA 58.918 29.630 0.00 0.00 39.69 2.57
4399 4467 8.809159 TTGTCGAAGAAATGCATAAAAATGAA 57.191 26.923 0.00 0.00 39.69 2.57
4400 4468 8.984891 TGTCGAAGAAATGCATAAAAATGAAT 57.015 26.923 0.00 0.00 39.69 2.57
4401 4469 8.862074 TGTCGAAGAAATGCATAAAAATGAATG 58.138 29.630 0.00 0.00 39.69 2.67
4402 4470 8.863049 GTCGAAGAAATGCATAAAAATGAATGT 58.137 29.630 0.00 0.00 39.69 2.71
4403 4471 9.421806 TCGAAGAAATGCATAAAAATGAATGTT 57.578 25.926 0.00 0.00 0.00 2.71
4404 4472 9.679596 CGAAGAAATGCATAAAAATGAATGTTC 57.320 29.630 0.00 0.00 0.00 3.18
4440 4508 6.865834 ACATCTAGATACATCCATTCCTCC 57.134 41.667 4.54 0.00 0.00 4.30
4441 4509 5.420421 ACATCTAGATACATCCATTCCTCCG 59.580 44.000 4.54 0.00 0.00 4.63
4442 4510 5.256806 TCTAGATACATCCATTCCTCCGA 57.743 43.478 0.00 0.00 0.00 4.55
4443 4511 5.010933 TCTAGATACATCCATTCCTCCGAC 58.989 45.833 0.00 0.00 0.00 4.79
4444 4512 2.558795 AGATACATCCATTCCTCCGACG 59.441 50.000 0.00 0.00 0.00 5.12
4445 4513 2.061509 TACATCCATTCCTCCGACGA 57.938 50.000 0.00 0.00 0.00 4.20
4446 4514 0.747255 ACATCCATTCCTCCGACGAG 59.253 55.000 0.00 0.00 35.72 4.18
4447 4515 0.747255 CATCCATTCCTCCGACGAGT 59.253 55.000 0.00 0.00 33.93 4.18
4448 4516 1.954382 CATCCATTCCTCCGACGAGTA 59.046 52.381 0.00 0.00 33.93 2.59
4449 4517 2.359981 TCCATTCCTCCGACGAGTAT 57.640 50.000 0.00 0.00 33.93 2.12
4450 4518 2.662866 TCCATTCCTCCGACGAGTATT 58.337 47.619 0.00 0.00 33.93 1.89
4451 4519 3.028850 TCCATTCCTCCGACGAGTATTT 58.971 45.455 0.00 0.00 33.93 1.40
4452 4520 3.449737 TCCATTCCTCCGACGAGTATTTT 59.550 43.478 0.00 0.00 33.93 1.82
4453 4521 3.802685 CCATTCCTCCGACGAGTATTTTC 59.197 47.826 0.00 0.00 33.93 2.29
4454 4522 2.838386 TCCTCCGACGAGTATTTTCG 57.162 50.000 0.00 0.00 45.70 3.46
4459 4527 1.887320 CGACGAGTATTTTCGGACGT 58.113 50.000 0.00 0.00 44.57 4.34
4460 4528 3.038352 CGACGAGTATTTTCGGACGTA 57.962 47.619 0.00 0.00 44.57 3.57
4461 4529 3.024991 CGACGAGTATTTTCGGACGTAG 58.975 50.000 0.00 0.00 44.57 3.51
4462 4530 3.357897 GACGAGTATTTTCGGACGTAGG 58.642 50.000 0.00 0.00 44.57 3.18
4463 4531 2.098117 ACGAGTATTTTCGGACGTAGGG 59.902 50.000 0.00 0.00 44.57 3.53
4464 4532 2.355756 CGAGTATTTTCGGACGTAGGGA 59.644 50.000 0.00 0.00 36.95 4.20
4465 4533 3.547613 CGAGTATTTTCGGACGTAGGGAG 60.548 52.174 0.00 0.00 36.95 4.30
4706 4798 3.181473 CGATACCGGTGTGGGATTTTCTA 60.181 47.826 19.93 0.00 43.52 2.10
4761 4853 6.323225 ACCACTACGGCTATTACTAGTGATTT 59.677 38.462 5.39 0.00 38.86 2.17
4945 5096 1.475280 CTGGCTGCCTTGTACGTAGTA 59.525 52.381 21.03 0.00 45.11 1.82
4992 5150 5.333263 CGGAATGCCAAAGAAATGTCAAAAC 60.333 40.000 0.00 0.00 0.00 2.43
4994 5152 6.293027 GGAATGCCAAAGAAATGTCAAAACTG 60.293 38.462 0.00 0.00 0.00 3.16
5122 5303 2.360483 ACAGTGATCAGCAGTATCTCCG 59.640 50.000 0.00 0.00 0.00 4.63
5182 5417 0.941542 TGTACGAACACAGCAAAGCC 59.058 50.000 0.00 0.00 0.00 4.35
5211 5446 2.518949 CAATTTGGCGAGCATGTACAC 58.481 47.619 0.00 0.00 0.00 2.90
5222 5457 2.886523 AGCATGTACACAACACAGCAAT 59.113 40.909 0.00 0.00 42.09 3.56
5233 5468 2.226330 ACACAGCAATGCCGTAAGAAA 58.774 42.857 0.00 0.00 43.02 2.52
5290 5610 0.040958 CACACAAGAAGCAGAACGCC 60.041 55.000 0.00 0.00 44.04 5.68
5572 5928 4.012895 CACGCGCTTGAAGCCGTT 62.013 61.111 23.93 11.79 42.42 4.44
5581 5937 2.194271 CTTGAAGCCGTTATCGTCCTC 58.806 52.381 0.00 0.00 35.01 3.71
5645 6001 0.603707 CGTGGCTGCAGAGGAAGAAA 60.604 55.000 20.43 0.00 0.00 2.52
5646 6002 1.831580 GTGGCTGCAGAGGAAGAAAT 58.168 50.000 20.43 0.00 0.00 2.17
5647 6003 1.742268 GTGGCTGCAGAGGAAGAAATC 59.258 52.381 20.43 0.00 0.00 2.17
5660 6016 2.785357 AGAAATCCTCCTCCTCCGAT 57.215 50.000 0.00 0.00 0.00 4.18
5662 6018 2.703007 AGAAATCCTCCTCCTCCGATTG 59.297 50.000 0.00 0.00 0.00 2.67
5726 6082 1.150827 CATTCGTTGTCTGCAGCTCA 58.849 50.000 9.47 8.10 0.00 4.26
5747 6103 0.841289 TTTCGTCCTTGGGGAACAGT 59.159 50.000 0.00 0.00 44.15 3.55
5759 6115 1.881252 GAACAGTCGCGTGTGGTGT 60.881 57.895 5.77 0.67 0.00 4.16
5816 6197 0.107116 AGTCGTCCTCGCAGATACCT 60.107 55.000 0.00 0.00 33.89 3.08
5825 6206 3.806521 CCTCGCAGATACCTTTCTTCATG 59.193 47.826 0.00 0.00 33.89 3.07
5839 6220 3.027412 TCTTCATGGACACTAGCTCCTC 58.973 50.000 8.23 0.00 0.00 3.71
5840 6221 1.781786 TCATGGACACTAGCTCCTCC 58.218 55.000 8.23 0.00 0.00 4.30
5842 6223 2.114616 CATGGACACTAGCTCCTCCTT 58.885 52.381 8.23 0.00 0.00 3.36
5844 6225 0.176910 GGACACTAGCTCCTCCTTGC 59.823 60.000 0.00 0.00 0.00 4.01
5854 6235 1.001406 CTCCTCCTTGCGGACCATATC 59.999 57.143 0.00 0.00 34.92 1.63
6063 6444 0.642291 CACAACAGCTGCTATCGACG 59.358 55.000 15.27 0.00 0.00 5.12
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 4.870636 AGATCCATGAAGGCCATTAACAA 58.129 39.130 5.01 0.00 37.29 2.83
2 3 4.524802 AGATCCATGAAGGCCATTAACA 57.475 40.909 5.01 0.00 37.29 2.41
4 5 6.872585 AAAAAGATCCATGAAGGCCATTAA 57.127 33.333 5.01 0.00 37.29 1.40
24 25 5.562635 TCCCTTAGCAACGAGGAATAAAAA 58.437 37.500 0.00 0.00 34.91 1.94
25 26 5.168647 TCCCTTAGCAACGAGGAATAAAA 57.831 39.130 0.00 0.00 34.91 1.52
26 27 4.829872 TCCCTTAGCAACGAGGAATAAA 57.170 40.909 0.00 0.00 34.91 1.40
27 28 4.829872 TTCCCTTAGCAACGAGGAATAA 57.170 40.909 0.00 0.00 34.91 1.40
28 29 4.020039 TGTTTCCCTTAGCAACGAGGAATA 60.020 41.667 0.00 0.00 36.53 1.75
29 30 3.244770 TGTTTCCCTTAGCAACGAGGAAT 60.245 43.478 0.00 0.00 36.53 3.01
30 31 2.105134 TGTTTCCCTTAGCAACGAGGAA 59.895 45.455 0.00 0.00 34.91 3.36
31 32 1.695242 TGTTTCCCTTAGCAACGAGGA 59.305 47.619 0.00 0.00 34.91 3.71
32 33 1.804748 GTGTTTCCCTTAGCAACGAGG 59.195 52.381 0.00 0.00 0.00 4.63
33 34 2.737252 GAGTGTTTCCCTTAGCAACGAG 59.263 50.000 0.00 0.00 0.00 4.18
34 35 2.367567 AGAGTGTTTCCCTTAGCAACGA 59.632 45.455 0.00 0.00 0.00 3.85
35 36 2.480419 CAGAGTGTTTCCCTTAGCAACG 59.520 50.000 0.00 0.00 0.00 4.10
36 37 3.477530 ACAGAGTGTTTCCCTTAGCAAC 58.522 45.455 0.00 0.00 0.00 4.17
37 38 3.857157 ACAGAGTGTTTCCCTTAGCAA 57.143 42.857 0.00 0.00 0.00 3.91
38 39 4.967084 TTACAGAGTGTTTCCCTTAGCA 57.033 40.909 0.00 0.00 0.00 3.49
39 40 5.488341 TCATTACAGAGTGTTTCCCTTAGC 58.512 41.667 0.00 0.00 0.00 3.09
40 41 9.838339 ATATTCATTACAGAGTGTTTCCCTTAG 57.162 33.333 0.00 0.00 0.00 2.18
41 42 9.832445 GATATTCATTACAGAGTGTTTCCCTTA 57.168 33.333 0.00 0.00 0.00 2.69
42 43 8.328758 TGATATTCATTACAGAGTGTTTCCCTT 58.671 33.333 0.00 0.00 0.00 3.95
43 44 7.861629 TGATATTCATTACAGAGTGTTTCCCT 58.138 34.615 0.00 0.00 0.00 4.20
44 45 7.770897 ACTGATATTCATTACAGAGTGTTTCCC 59.229 37.037 0.00 0.00 34.88 3.97
45 46 8.723942 ACTGATATTCATTACAGAGTGTTTCC 57.276 34.615 0.00 0.00 34.88 3.13
76 77 9.998106 ACTACTTGTCAAATTATGAGTACAGTT 57.002 29.630 0.00 0.00 39.19 3.16
88 89 8.575589 TGCATCATGTTTACTACTTGTCAAATT 58.424 29.630 0.00 0.00 34.44 1.82
89 90 8.109705 TGCATCATGTTTACTACTTGTCAAAT 57.890 30.769 0.00 0.00 34.44 2.32
90 91 7.503521 TGCATCATGTTTACTACTTGTCAAA 57.496 32.000 0.00 0.00 34.44 2.69
91 92 7.503521 TTGCATCATGTTTACTACTTGTCAA 57.496 32.000 0.00 0.00 34.44 3.18
92 93 7.503521 TTTGCATCATGTTTACTACTTGTCA 57.496 32.000 0.00 0.00 34.44 3.58
93 94 8.690840 GTTTTTGCATCATGTTTACTACTTGTC 58.309 33.333 0.00 0.00 34.44 3.18
94 95 8.194104 TGTTTTTGCATCATGTTTACTACTTGT 58.806 29.630 0.00 0.00 34.44 3.16
95 96 8.572828 TGTTTTTGCATCATGTTTACTACTTG 57.427 30.769 0.00 0.00 34.18 3.16
97 98 9.840427 GTATGTTTTTGCATCATGTTTACTACT 57.160 29.630 0.00 0.00 0.00 2.57
98 99 8.785101 CGTATGTTTTTGCATCATGTTTACTAC 58.215 33.333 0.00 0.00 0.00 2.73
99 100 8.722394 TCGTATGTTTTTGCATCATGTTTACTA 58.278 29.630 0.00 0.00 0.00 1.82
100 101 7.589395 TCGTATGTTTTTGCATCATGTTTACT 58.411 30.769 0.00 0.00 0.00 2.24
101 102 7.461416 GCTCGTATGTTTTTGCATCATGTTTAC 60.461 37.037 0.00 0.00 0.00 2.01
102 103 6.526325 GCTCGTATGTTTTTGCATCATGTTTA 59.474 34.615 0.00 0.00 0.00 2.01
103 104 5.345741 GCTCGTATGTTTTTGCATCATGTTT 59.654 36.000 0.00 0.00 0.00 2.83
104 105 4.858692 GCTCGTATGTTTTTGCATCATGTT 59.141 37.500 0.00 0.00 0.00 2.71
105 106 4.156556 AGCTCGTATGTTTTTGCATCATGT 59.843 37.500 0.00 0.00 0.00 3.21
106 107 4.665212 AGCTCGTATGTTTTTGCATCATG 58.335 39.130 0.00 0.00 0.00 3.07
107 108 4.201950 GGAGCTCGTATGTTTTTGCATCAT 60.202 41.667 7.83 0.00 0.00 2.45
108 109 3.126858 GGAGCTCGTATGTTTTTGCATCA 59.873 43.478 7.83 0.00 0.00 3.07
109 110 3.375299 AGGAGCTCGTATGTTTTTGCATC 59.625 43.478 7.25 0.00 0.00 3.91
110 111 3.347216 AGGAGCTCGTATGTTTTTGCAT 58.653 40.909 7.25 0.00 0.00 3.96
111 112 2.742053 GAGGAGCTCGTATGTTTTTGCA 59.258 45.455 9.29 0.00 0.00 4.08
112 113 2.742053 TGAGGAGCTCGTATGTTTTTGC 59.258 45.455 9.29 0.00 32.35 3.68
113 114 4.728882 GCATGAGGAGCTCGTATGTTTTTG 60.729 45.833 9.29 1.45 32.35 2.44
114 115 3.375299 GCATGAGGAGCTCGTATGTTTTT 59.625 43.478 9.29 0.00 32.35 1.94
115 116 2.939103 GCATGAGGAGCTCGTATGTTTT 59.061 45.455 9.29 0.00 32.35 2.43
116 117 2.169352 AGCATGAGGAGCTCGTATGTTT 59.831 45.455 9.29 3.53 38.01 2.83
117 118 1.759445 AGCATGAGGAGCTCGTATGTT 59.241 47.619 9.29 7.82 38.01 2.71
118 119 1.068281 CAGCATGAGGAGCTCGTATGT 59.932 52.381 9.29 0.00 41.14 2.29
119 120 1.339291 TCAGCATGAGGAGCTCGTATG 59.661 52.381 9.29 13.03 42.56 2.39
120 121 1.697284 TCAGCATGAGGAGCTCGTAT 58.303 50.000 9.29 0.00 42.56 3.06
121 122 3.191182 TCAGCATGAGGAGCTCGTA 57.809 52.632 9.29 0.00 42.56 3.43
122 123 4.024717 TCAGCATGAGGAGCTCGT 57.975 55.556 9.04 9.04 42.56 4.18
132 133 1.556564 CGTACGTTAGGGTCAGCATG 58.443 55.000 7.22 0.00 37.54 4.06
133 134 0.458669 CCGTACGTTAGGGTCAGCAT 59.541 55.000 15.21 0.00 0.00 3.79
134 135 1.597797 CCCGTACGTTAGGGTCAGCA 61.598 60.000 15.21 0.00 42.67 4.41
135 136 1.140375 CCCGTACGTTAGGGTCAGC 59.860 63.158 15.21 0.00 42.67 4.26
152 153 0.256752 ATAAGGGGTGCCGGTTAACC 59.743 55.000 15.13 15.13 35.59 2.85
153 154 3.405831 GATATAAGGGGTGCCGGTTAAC 58.594 50.000 1.90 0.00 0.00 2.01
154 155 2.372837 GGATATAAGGGGTGCCGGTTAA 59.627 50.000 1.90 0.00 0.00 2.01
155 156 1.980036 GGATATAAGGGGTGCCGGTTA 59.020 52.381 1.90 0.00 0.00 2.85
156 157 0.769247 GGATATAAGGGGTGCCGGTT 59.231 55.000 1.90 0.00 0.00 4.44
157 158 0.400815 TGGATATAAGGGGTGCCGGT 60.401 55.000 1.90 0.00 0.00 5.28
158 159 0.324943 CTGGATATAAGGGGTGCCGG 59.675 60.000 0.00 0.00 0.00 6.13
159 160 1.002087 GACTGGATATAAGGGGTGCCG 59.998 57.143 0.00 0.00 0.00 5.69
160 161 2.054799 TGACTGGATATAAGGGGTGCC 58.945 52.381 0.00 0.00 0.00 5.01
161 162 5.426833 AGATATGACTGGATATAAGGGGTGC 59.573 44.000 0.00 0.00 0.00 5.01
162 163 7.288852 CCTAGATATGACTGGATATAAGGGGTG 59.711 44.444 0.00 0.00 0.00 4.61
163 164 7.188454 TCCTAGATATGACTGGATATAAGGGGT 59.812 40.741 0.00 0.00 29.78 4.95
164 165 7.507616 GTCCTAGATATGACTGGATATAAGGGG 59.492 44.444 0.00 0.00 29.78 4.79
165 166 8.061920 TGTCCTAGATATGACTGGATATAAGGG 58.938 40.741 0.00 0.00 32.67 3.95
166 167 9.130661 CTGTCCTAGATATGACTGGATATAAGG 57.869 40.741 0.00 0.00 32.67 2.69
167 168 9.913310 TCTGTCCTAGATATGACTGGATATAAG 57.087 37.037 0.00 0.00 33.00 1.73
183 184 3.142977 AGCCTTCCCATATCTGTCCTAGA 59.857 47.826 0.00 0.00 40.37 2.43
184 185 3.513515 GAGCCTTCCCATATCTGTCCTAG 59.486 52.174 0.00 0.00 0.00 3.02
185 186 3.511477 GAGCCTTCCCATATCTGTCCTA 58.489 50.000 0.00 0.00 0.00 2.94
186 187 2.334023 GAGCCTTCCCATATCTGTCCT 58.666 52.381 0.00 0.00 0.00 3.85
187 188 1.001406 CGAGCCTTCCCATATCTGTCC 59.999 57.143 0.00 0.00 0.00 4.02
188 189 1.001406 CCGAGCCTTCCCATATCTGTC 59.999 57.143 0.00 0.00 0.00 3.51
189 190 1.051812 CCGAGCCTTCCCATATCTGT 58.948 55.000 0.00 0.00 0.00 3.41
190 191 0.322975 CCCGAGCCTTCCCATATCTG 59.677 60.000 0.00 0.00 0.00 2.90
191 192 1.484444 GCCCGAGCCTTCCCATATCT 61.484 60.000 0.00 0.00 0.00 1.98
192 193 1.003233 GCCCGAGCCTTCCCATATC 60.003 63.158 0.00 0.00 0.00 1.63
193 194 2.883828 CGCCCGAGCCTTCCCATAT 61.884 63.158 0.00 0.00 34.57 1.78
194 195 3.546543 CGCCCGAGCCTTCCCATA 61.547 66.667 0.00 0.00 34.57 2.74
211 212 2.239124 TTTTCGACGTGGCGGACAC 61.239 57.895 3.20 3.20 46.78 3.67
212 213 2.106534 TTTTCGACGTGGCGGACA 59.893 55.556 0.00 0.00 0.00 4.02
213 214 2.547798 GTTTTCGACGTGGCGGAC 59.452 61.111 0.00 0.00 0.00 4.79
214 215 3.031457 CGTTTTCGACGTGGCGGA 61.031 61.111 0.00 0.00 46.49 5.54
222 223 5.775513 TGGTCCAGCCTATCGTTTTCGAC 62.776 52.174 0.00 0.00 46.20 4.20
223 224 3.728364 TGGTCCAGCCTATCGTTTTCGA 61.728 50.000 0.00 0.00 46.87 3.71
224 225 1.287425 GGTCCAGCCTATCGTTTTCG 58.713 55.000 0.00 0.00 45.64 3.46
225 226 2.396590 TGGTCCAGCCTATCGTTTTC 57.603 50.000 0.00 0.00 38.35 2.29
226 227 2.433436 GTTGGTCCAGCCTATCGTTTT 58.567 47.619 0.00 0.00 38.35 2.43
227 228 1.339727 GGTTGGTCCAGCCTATCGTTT 60.340 52.381 17.22 0.00 38.35 3.60
228 229 0.252197 GGTTGGTCCAGCCTATCGTT 59.748 55.000 17.22 0.00 38.35 3.85
229 230 0.907704 TGGTTGGTCCAGCCTATCGT 60.908 55.000 23.83 0.00 41.93 3.73
230 231 1.904771 TGGTTGGTCCAGCCTATCG 59.095 57.895 23.83 0.00 41.93 2.92
238 239 2.420687 GGTGCAATTTTTGGTTGGTCCA 60.421 45.455 0.00 0.00 45.60 4.02
239 240 2.217750 GGTGCAATTTTTGGTTGGTCC 58.782 47.619 0.00 0.00 0.00 4.46
240 241 2.911484 TGGTGCAATTTTTGGTTGGTC 58.089 42.857 0.00 0.00 0.00 4.02
241 242 3.356529 TTGGTGCAATTTTTGGTTGGT 57.643 38.095 0.00 0.00 0.00 3.67
242 243 4.261530 GGATTTGGTGCAATTTTTGGTTGG 60.262 41.667 0.00 0.00 0.00 3.77
243 244 4.261530 GGGATTTGGTGCAATTTTTGGTTG 60.262 41.667 0.00 0.00 0.00 3.77
244 245 3.888323 GGGATTTGGTGCAATTTTTGGTT 59.112 39.130 0.00 0.00 0.00 3.67
245 246 3.485394 GGGATTTGGTGCAATTTTTGGT 58.515 40.909 0.00 0.00 0.00 3.67
246 247 2.819019 GGGGATTTGGTGCAATTTTTGG 59.181 45.455 0.00 0.00 0.00 3.28
247 248 2.819019 GGGGGATTTGGTGCAATTTTTG 59.181 45.455 0.00 0.00 0.00 2.44
248 249 2.444766 TGGGGGATTTGGTGCAATTTTT 59.555 40.909 0.00 0.00 0.00 1.94
249 250 2.061061 TGGGGGATTTGGTGCAATTTT 58.939 42.857 0.00 0.00 0.00 1.82
250 251 1.739750 TGGGGGATTTGGTGCAATTT 58.260 45.000 0.00 0.00 0.00 1.82
251 252 1.839354 GATGGGGGATTTGGTGCAATT 59.161 47.619 0.00 0.00 0.00 2.32
252 253 1.499368 GATGGGGGATTTGGTGCAAT 58.501 50.000 0.00 0.00 0.00 3.56
253 254 0.617249 GGATGGGGGATTTGGTGCAA 60.617 55.000 0.00 0.00 0.00 4.08
254 255 1.001503 GGATGGGGGATTTGGTGCA 59.998 57.895 0.00 0.00 0.00 4.57
255 256 1.762063 GGGATGGGGGATTTGGTGC 60.762 63.158 0.00 0.00 0.00 5.01
256 257 1.455587 CGGGATGGGGGATTTGGTG 60.456 63.158 0.00 0.00 0.00 4.17
257 258 1.621205 TCGGGATGGGGGATTTGGT 60.621 57.895 0.00 0.00 0.00 3.67
258 259 1.152756 GTCGGGATGGGGGATTTGG 60.153 63.158 0.00 0.00 0.00 3.28
259 260 1.152756 GGTCGGGATGGGGGATTTG 60.153 63.158 0.00 0.00 0.00 2.32
260 261 0.924226 AAGGTCGGGATGGGGGATTT 60.924 55.000 0.00 0.00 0.00 2.17
261 262 1.308746 AAGGTCGGGATGGGGGATT 60.309 57.895 0.00 0.00 0.00 3.01
262 263 2.078665 CAAGGTCGGGATGGGGGAT 61.079 63.158 0.00 0.00 0.00 3.85
263 264 2.561378 ATCAAGGTCGGGATGGGGGA 62.561 60.000 0.00 0.00 0.00 4.81
264 265 2.078665 ATCAAGGTCGGGATGGGGG 61.079 63.158 0.00 0.00 0.00 5.40
265 266 1.149174 CATCAAGGTCGGGATGGGG 59.851 63.158 0.00 0.00 37.77 4.96
266 267 4.885426 CATCAAGGTCGGGATGGG 57.115 61.111 0.00 0.00 37.77 4.00
268 269 0.179045 GGTCCATCAAGGTCGGGATG 60.179 60.000 0.00 0.00 40.41 3.51
269 270 0.620410 TGGTCCATCAAGGTCGGGAT 60.620 55.000 0.00 0.00 39.02 3.85
270 271 0.620410 ATGGTCCATCAAGGTCGGGA 60.620 55.000 0.00 0.00 39.02 5.14
271 272 0.179045 GATGGTCCATCAAGGTCGGG 60.179 60.000 24.55 0.00 40.28 5.14
272 273 0.179045 GGATGGTCCATCAAGGTCGG 60.179 60.000 29.07 0.00 42.13 4.79
273 274 0.541392 TGGATGGTCCATCAAGGTCG 59.459 55.000 29.07 0.00 42.67 4.79
283 284 3.696548 GTGGAGAGAAAAATGGATGGTCC 59.303 47.826 0.00 0.00 36.96 4.46
284 285 4.335416 TGTGGAGAGAAAAATGGATGGTC 58.665 43.478 0.00 0.00 0.00 4.02
285 286 4.387026 TGTGGAGAGAAAAATGGATGGT 57.613 40.909 0.00 0.00 0.00 3.55
286 287 5.927281 AATGTGGAGAGAAAAATGGATGG 57.073 39.130 0.00 0.00 0.00 3.51
287 288 7.166691 AGAAATGTGGAGAGAAAAATGGATG 57.833 36.000 0.00 0.00 0.00 3.51
288 289 6.379417 GGAGAAATGTGGAGAGAAAAATGGAT 59.621 38.462 0.00 0.00 0.00 3.41
289 290 5.711976 GGAGAAATGTGGAGAGAAAAATGGA 59.288 40.000 0.00 0.00 0.00 3.41
290 291 5.105595 GGGAGAAATGTGGAGAGAAAAATGG 60.106 44.000 0.00 0.00 0.00 3.16
291 292 5.713861 AGGGAGAAATGTGGAGAGAAAAATG 59.286 40.000 0.00 0.00 0.00 2.32
292 293 5.896963 AGGGAGAAATGTGGAGAGAAAAAT 58.103 37.500 0.00 0.00 0.00 1.82
293 294 5.316987 GAGGGAGAAATGTGGAGAGAAAAA 58.683 41.667 0.00 0.00 0.00 1.94
294 295 4.563580 CGAGGGAGAAATGTGGAGAGAAAA 60.564 45.833 0.00 0.00 0.00 2.29
295 296 3.055819 CGAGGGAGAAATGTGGAGAGAAA 60.056 47.826 0.00 0.00 0.00 2.52
296 297 2.497675 CGAGGGAGAAATGTGGAGAGAA 59.502 50.000 0.00 0.00 0.00 2.87
297 298 2.103373 CGAGGGAGAAATGTGGAGAGA 58.897 52.381 0.00 0.00 0.00 3.10
298 299 1.827969 ACGAGGGAGAAATGTGGAGAG 59.172 52.381 0.00 0.00 0.00 3.20
299 300 1.825474 GACGAGGGAGAAATGTGGAGA 59.175 52.381 0.00 0.00 0.00 3.71
300 301 1.469940 CGACGAGGGAGAAATGTGGAG 60.470 57.143 0.00 0.00 0.00 3.86
301 302 0.530744 CGACGAGGGAGAAATGTGGA 59.469 55.000 0.00 0.00 0.00 4.02
302 303 0.460284 CCGACGAGGGAGAAATGTGG 60.460 60.000 0.00 0.00 35.97 4.17
303 304 0.246635 ACCGACGAGGGAGAAATGTG 59.753 55.000 0.00 0.00 46.96 3.21
304 305 0.246635 CACCGACGAGGGAGAAATGT 59.753 55.000 0.00 0.00 46.96 2.71
305 306 0.246635 ACACCGACGAGGGAGAAATG 59.753 55.000 0.00 0.00 46.96 2.32
306 307 0.974383 AACACCGACGAGGGAGAAAT 59.026 50.000 0.00 0.00 46.96 2.17
307 308 0.032952 CAACACCGACGAGGGAGAAA 59.967 55.000 0.00 0.00 46.96 2.52
308 309 1.663739 CAACACCGACGAGGGAGAA 59.336 57.895 0.00 0.00 46.96 2.87
309 310 2.273179 CCAACACCGACGAGGGAGA 61.273 63.158 0.00 0.00 46.96 3.71
310 311 2.261671 CCAACACCGACGAGGGAG 59.738 66.667 0.00 0.00 46.96 4.30
311 312 3.998672 GCCAACACCGACGAGGGA 61.999 66.667 0.00 0.00 46.96 4.20
314 315 3.530910 AAGGGCCAACACCGACGAG 62.531 63.158 6.18 0.00 0.00 4.18
315 316 3.524648 GAAGGGCCAACACCGACGA 62.525 63.158 6.18 0.00 0.00 4.20
316 317 3.047877 GAAGGGCCAACACCGACG 61.048 66.667 6.18 0.00 0.00 5.12
317 318 2.671963 GGAAGGGCCAACACCGAC 60.672 66.667 6.18 0.00 36.34 4.79
318 319 3.961414 GGGAAGGGCCAACACCGA 61.961 66.667 6.18 0.00 38.95 4.69
319 320 2.536997 CTAGGGAAGGGCCAACACCG 62.537 65.000 6.18 0.00 38.95 4.94
320 321 1.303282 CTAGGGAAGGGCCAACACC 59.697 63.158 6.18 1.88 38.95 4.16
324 325 3.021263 GGGCTAGGGAAGGGCCAA 61.021 66.667 6.18 0.00 46.87 4.52
340 341 1.153745 GACTCAGTACAGCTGCGGG 60.154 63.158 15.27 2.18 44.66 6.13
362 363 3.902162 TTACGGTGCAGACGACGCC 62.902 63.158 16.62 0.00 34.93 5.68
427 428 2.095847 TACCGCGACAATGTTCGGC 61.096 57.895 21.69 10.37 45.23 5.54
562 563 3.095347 GCTCCGTGAGTCCATCCCC 62.095 68.421 3.38 0.00 31.39 4.81
563 564 1.690219 ATGCTCCGTGAGTCCATCCC 61.690 60.000 3.38 0.00 31.39 3.85
564 565 0.531532 CATGCTCCGTGAGTCCATCC 60.532 60.000 3.38 0.00 31.39 3.51
565 566 0.461548 TCATGCTCCGTGAGTCCATC 59.538 55.000 0.00 0.00 31.39 3.51
572 573 5.821995 TGAATTAATTCATCATGCTCCGTGA 59.178 36.000 23.86 0.00 41.51 4.35
574 575 6.698008 TTGAATTAATTCATCATGCTCCGT 57.302 33.333 27.11 0.00 45.30 4.69
633 634 1.732809 CATGCTCATCATCATCTCCGC 59.267 52.381 0.00 0.00 31.79 5.54
664 665 4.934797 TCCACCTTCAGATTCATTTCCT 57.065 40.909 0.00 0.00 0.00 3.36
674 675 5.560722 TTAGAATGTGTTCCACCTTCAGA 57.439 39.130 12.68 1.13 39.98 3.27
676 677 5.690865 AGTTTAGAATGTGTTCCACCTTCA 58.309 37.500 12.68 0.40 39.98 3.02
678 679 8.528044 TTAAAGTTTAGAATGTGTTCCACCTT 57.472 30.769 0.00 0.00 34.81 3.50
684 685 8.626526 TGAACCCTTAAAGTTTAGAATGTGTTC 58.373 33.333 0.00 5.80 34.46 3.18
692 693 8.856103 CCTTTGATTGAACCCTTAAAGTTTAGA 58.144 33.333 0.00 0.00 0.00 2.10
724 725 5.678616 GCTCCAGAGTCTCTATGTTGAACTC 60.679 48.000 0.94 0.00 0.00 3.01
730 731 2.425312 CGTGCTCCAGAGTCTCTATGTT 59.575 50.000 0.94 0.00 0.00 2.71
731 732 2.020720 CGTGCTCCAGAGTCTCTATGT 58.979 52.381 0.94 0.00 0.00 2.29
732 733 1.336440 CCGTGCTCCAGAGTCTCTATG 59.664 57.143 0.94 0.00 0.00 2.23
734 735 1.032657 GCCGTGCTCCAGAGTCTCTA 61.033 60.000 0.94 0.00 0.00 2.43
735 736 2.347322 GCCGTGCTCCAGAGTCTCT 61.347 63.158 0.00 0.00 0.00 3.10
736 737 2.183046 GCCGTGCTCCAGAGTCTC 59.817 66.667 0.00 0.00 0.00 3.36
755 760 5.967088 TGATCAAAGTAGTCCTTGTAGAGC 58.033 41.667 0.00 0.00 32.32 4.09
761 766 6.406370 TGGTACATGATCAAAGTAGTCCTTG 58.594 40.000 0.00 0.00 32.32 3.61
767 772 8.184192 GGAATTGTTGGTACATGATCAAAGTAG 58.816 37.037 0.00 0.00 39.30 2.57
822 827 3.751175 GTCCACAAAACGATTCATCAGGA 59.249 43.478 0.00 0.00 0.00 3.86
825 830 2.095969 GCGTCCACAAAACGATTCATCA 60.096 45.455 0.00 0.00 42.62 3.07
826 831 2.159627 AGCGTCCACAAAACGATTCATC 59.840 45.455 0.00 0.00 42.62 2.92
833 838 0.099791 ACCAAAGCGTCCACAAAACG 59.900 50.000 0.00 0.00 42.87 3.60
850 855 3.744238 AAACAAGGGTTTGTGCATACC 57.256 42.857 6.98 6.98 46.54 2.73
893 898 0.392998 CAATGTCCCGGACCAGAAGG 60.393 60.000 15.24 0.00 42.21 3.46
910 915 2.166829 CACATGGGACCCGAATTTCAA 58.833 47.619 5.91 0.00 0.00 2.69
934 939 2.097791 GGATAGTCGACTGAGGTGTGTC 59.902 54.545 28.12 7.57 0.00 3.67
1405 1412 1.068943 TCCAACTAGCCCCCAAACCA 61.069 55.000 0.00 0.00 0.00 3.67
1451 1459 0.240945 GCAACAACGGCAGCAGTAAT 59.759 50.000 0.00 0.00 0.00 1.89
1550 1558 4.415881 AACATCACGGATTATACCTGCA 57.584 40.909 0.00 0.00 0.00 4.41
1612 1620 3.397317 GCAAAGCAAAGCGCACCG 61.397 61.111 11.47 0.00 46.13 4.94
1613 1621 1.153597 AAAGCAAAGCAAAGCGCACC 61.154 50.000 11.47 0.00 46.13 5.01
1614 1622 0.042794 CAAAGCAAAGCAAAGCGCAC 60.043 50.000 11.47 0.00 46.13 5.34
1615 1623 1.764180 GCAAAGCAAAGCAAAGCGCA 61.764 50.000 11.47 0.00 46.13 6.09
1616 1624 1.083209 GCAAAGCAAAGCAAAGCGC 60.083 52.632 0.00 0.00 42.91 5.92
1617 1625 0.932399 AAGCAAAGCAAAGCAAAGCG 59.068 45.000 0.00 0.00 35.48 4.68
1618 1626 2.711885 CAAAGCAAAGCAAAGCAAAGC 58.288 42.857 0.00 0.00 0.00 3.51
1619 1627 2.540157 GGCAAAGCAAAGCAAAGCAAAG 60.540 45.455 0.00 0.00 0.00 2.77
1620 1628 1.401199 GGCAAAGCAAAGCAAAGCAAA 59.599 42.857 0.00 0.00 0.00 3.68
1621 1629 1.015868 GGCAAAGCAAAGCAAAGCAA 58.984 45.000 0.00 0.00 0.00 3.91
1622 1630 0.107800 TGGCAAAGCAAAGCAAAGCA 60.108 45.000 0.00 0.00 0.00 3.91
1623 1631 1.196127 GATGGCAAAGCAAAGCAAAGC 59.804 47.619 0.00 0.00 0.00 3.51
1624 1632 2.485903 TGATGGCAAAGCAAAGCAAAG 58.514 42.857 0.00 0.00 0.00 2.77
1625 1633 2.616634 TGATGGCAAAGCAAAGCAAA 57.383 40.000 0.00 0.00 0.00 3.68
1626 1634 2.037381 TGATGATGGCAAAGCAAAGCAA 59.963 40.909 0.00 0.00 0.00 3.91
1627 1635 1.619332 TGATGATGGCAAAGCAAAGCA 59.381 42.857 0.00 0.00 0.00 3.91
2173 2205 5.824904 ATAATCTTTGCGACTTCAGCATT 57.175 34.783 0.00 0.00 44.74 3.56
2240 2272 7.039882 GTCCGAAGATAATTCTTGTACCTTGA 58.960 38.462 0.00 0.00 42.34 3.02
2389 2421 1.404391 GCATCAGCCCAGAAGACATTG 59.596 52.381 0.00 0.00 33.58 2.82
2500 2532 6.719370 GCCTATGATGGTTCATACCCAAAATA 59.281 38.462 0.00 0.00 44.35 1.40
2501 2533 5.539955 GCCTATGATGGTTCATACCCAAAAT 59.460 40.000 0.00 0.00 44.35 1.82
2668 2700 2.202946 GGCCAAGCGAGGTCTAGC 60.203 66.667 0.00 0.00 0.00 3.42
2733 2765 1.453155 AACATGCGCCAAGGACTTAG 58.547 50.000 4.18 0.00 0.00 2.18
2776 2808 8.530311 TCAAATACACAATGGCTAAAATCATGT 58.470 29.630 0.00 0.00 0.00 3.21
2791 2823 4.875536 CCATCCTCGACATCAAATACACAA 59.124 41.667 0.00 0.00 0.00 3.33
2898 2930 1.673923 GCAAGGCCCAATTTTCTCTGC 60.674 52.381 0.00 0.00 0.00 4.26
2923 2955 1.867233 CCAGAGAATATTTGTCGGCCG 59.133 52.381 22.12 22.12 0.00 6.13
3271 3303 2.844122 ACCGCACAAGTTGTTCTTTC 57.156 45.000 5.57 0.00 33.63 2.62
3696 3728 7.896383 TTACCAAGGGGATAATCATTTTGAG 57.104 36.000 0.00 0.00 38.05 3.02
3745 3777 6.159988 AGTAACTTCACTCATCTTCTTTCCG 58.840 40.000 0.00 0.00 0.00 4.30
3771 3803 3.506067 GGTTTCCTGACAATTTCCACGAT 59.494 43.478 0.00 0.00 0.00 3.73
3816 3848 5.241662 AGAAATAAACTGCAGAGACACCTC 58.758 41.667 23.35 8.34 39.72 3.85
4029 4094 5.798125 TTCACAAGGCCACATGAAAATAA 57.202 34.783 5.01 0.00 0.00 1.40
4060 4128 2.935201 CTGCACAATACAGAGAGAAGCC 59.065 50.000 0.00 0.00 37.32 4.35
4112 4180 6.071560 TCACGAATGTTCTGTGAGGTACTAAT 60.072 38.462 12.80 0.00 41.55 1.73
4130 4198 5.371115 AATTGGTTCAAATCGTCACGAAT 57.629 34.783 2.76 0.00 39.99 3.34
4150 4218 4.895297 AGATGAACACAAACCTGACCAAAT 59.105 37.500 0.00 0.00 0.00 2.32
4288 4356 2.806244 CTCACTTGGGTTTCGGTTAGTG 59.194 50.000 0.00 0.00 35.51 2.74
4340 4408 4.715297 ACGGAGGGAGTATCAAACATAAGT 59.285 41.667 0.00 0.00 36.25 2.24
4352 4420 0.032813 ATTTCCGGACGGAGGGAGTA 60.033 55.000 13.64 0.00 46.06 2.59
4353 4421 0.032813 TATTTCCGGACGGAGGGAGT 60.033 55.000 13.64 0.00 46.06 3.85
4354 4422 0.388294 GTATTTCCGGACGGAGGGAG 59.612 60.000 13.64 0.00 46.06 4.30
4355 4423 0.032813 AGTATTTCCGGACGGAGGGA 60.033 55.000 13.64 4.95 46.06 4.20
4356 4424 0.828677 AAGTATTTCCGGACGGAGGG 59.171 55.000 13.64 0.00 46.06 4.30
4357 4425 1.206371 ACAAGTATTTCCGGACGGAGG 59.794 52.381 13.64 0.00 46.06 4.30
4358 4426 2.537401 GACAAGTATTTCCGGACGGAG 58.463 52.381 13.64 3.15 46.06 4.63
4359 4427 1.135315 CGACAAGTATTTCCGGACGGA 60.135 52.381 1.83 9.76 43.52 4.69
4360 4428 1.135315 TCGACAAGTATTTCCGGACGG 60.135 52.381 1.83 3.96 0.00 4.79
4361 4429 2.267188 TCGACAAGTATTTCCGGACG 57.733 50.000 1.83 0.27 0.00 4.79
4362 4430 3.841643 TCTTCGACAAGTATTTCCGGAC 58.158 45.455 1.83 0.00 0.00 4.79
4363 4431 4.524316 TTCTTCGACAAGTATTTCCGGA 57.476 40.909 0.00 0.00 0.00 5.14
4364 4432 5.560148 CATTTCTTCGACAAGTATTTCCGG 58.440 41.667 0.00 0.00 0.00 5.14
4365 4433 5.022021 GCATTTCTTCGACAAGTATTTCCG 58.978 41.667 0.00 0.00 0.00 4.30
4366 4434 5.938322 TGCATTTCTTCGACAAGTATTTCC 58.062 37.500 0.00 0.00 0.00 3.13
4367 4435 9.554724 TTTATGCATTTCTTCGACAAGTATTTC 57.445 29.630 3.54 0.00 0.00 2.17
4368 4436 9.906660 TTTTATGCATTTCTTCGACAAGTATTT 57.093 25.926 3.54 0.00 0.00 1.40
4369 4437 9.906660 TTTTTATGCATTTCTTCGACAAGTATT 57.093 25.926 3.54 0.00 0.00 1.89
4371 4439 9.340695 CATTTTTATGCATTTCTTCGACAAGTA 57.659 29.630 3.54 0.00 0.00 2.24
4372 4440 8.081633 TCATTTTTATGCATTTCTTCGACAAGT 58.918 29.630 3.54 0.00 0.00 3.16
4373 4441 8.451687 TCATTTTTATGCATTTCTTCGACAAG 57.548 30.769 3.54 0.00 0.00 3.16
4374 4442 8.809159 TTCATTTTTATGCATTTCTTCGACAA 57.191 26.923 3.54 0.00 0.00 3.18
4375 4443 8.862074 CATTCATTTTTATGCATTTCTTCGACA 58.138 29.630 3.54 0.00 0.00 4.35
4376 4444 8.863049 ACATTCATTTTTATGCATTTCTTCGAC 58.137 29.630 3.54 0.00 0.00 4.20
4377 4445 8.984891 ACATTCATTTTTATGCATTTCTTCGA 57.015 26.923 3.54 0.00 0.00 3.71
4378 4446 9.679596 GAACATTCATTTTTATGCATTTCTTCG 57.320 29.630 3.54 0.00 0.00 3.79
4414 4482 8.986991 GGAGGAATGGATGTATCTAGATGTATT 58.013 37.037 15.79 6.57 0.00 1.89
4415 4483 7.286546 CGGAGGAATGGATGTATCTAGATGTAT 59.713 40.741 15.79 9.11 0.00 2.29
4416 4484 6.603599 CGGAGGAATGGATGTATCTAGATGTA 59.396 42.308 15.79 4.44 0.00 2.29
4417 4485 5.420421 CGGAGGAATGGATGTATCTAGATGT 59.580 44.000 15.79 1.25 0.00 3.06
4418 4486 5.654209 TCGGAGGAATGGATGTATCTAGATG 59.346 44.000 15.79 0.00 0.00 2.90
4419 4487 5.654650 GTCGGAGGAATGGATGTATCTAGAT 59.345 44.000 10.73 10.73 0.00 1.98
4420 4488 5.010933 GTCGGAGGAATGGATGTATCTAGA 58.989 45.833 0.00 0.00 0.00 2.43
4421 4489 4.142578 CGTCGGAGGAATGGATGTATCTAG 60.143 50.000 0.00 0.00 0.00 2.43
4422 4490 3.756963 CGTCGGAGGAATGGATGTATCTA 59.243 47.826 0.00 0.00 0.00 1.98
4423 4491 2.558795 CGTCGGAGGAATGGATGTATCT 59.441 50.000 0.00 0.00 0.00 1.98
4424 4492 2.557056 TCGTCGGAGGAATGGATGTATC 59.443 50.000 0.00 0.00 0.00 2.24
4425 4493 2.558795 CTCGTCGGAGGAATGGATGTAT 59.441 50.000 1.73 0.00 36.61 2.29
4426 4494 1.954382 CTCGTCGGAGGAATGGATGTA 59.046 52.381 1.73 0.00 36.61 2.29
4427 4495 0.747255 CTCGTCGGAGGAATGGATGT 59.253 55.000 1.73 0.00 36.61 3.06
4428 4496 0.747255 ACTCGTCGGAGGAATGGATG 59.253 55.000 1.73 0.00 44.93 3.51
4429 4497 2.359981 TACTCGTCGGAGGAATGGAT 57.640 50.000 1.73 0.00 44.93 3.41
4430 4498 2.359981 ATACTCGTCGGAGGAATGGA 57.640 50.000 1.73 0.00 44.93 3.41
4431 4499 3.454371 AAATACTCGTCGGAGGAATGG 57.546 47.619 1.73 0.00 44.93 3.16
4432 4500 3.486108 CGAAAATACTCGTCGGAGGAATG 59.514 47.826 1.73 0.00 44.93 2.67
4433 4501 3.703420 CGAAAATACTCGTCGGAGGAAT 58.297 45.455 1.73 0.00 44.93 3.01
4434 4502 3.141002 CGAAAATACTCGTCGGAGGAA 57.859 47.619 1.73 0.00 44.93 3.36
4435 4503 2.838386 CGAAAATACTCGTCGGAGGA 57.162 50.000 0.00 0.00 44.93 3.71
4440 4508 1.887320 ACGTCCGAAAATACTCGTCG 58.113 50.000 0.00 0.00 38.89 5.12
4441 4509 3.357897 CCTACGTCCGAAAATACTCGTC 58.642 50.000 0.00 0.00 37.11 4.20
4442 4510 2.098117 CCCTACGTCCGAAAATACTCGT 59.902 50.000 0.00 0.00 37.11 4.18
4443 4511 2.355756 TCCCTACGTCCGAAAATACTCG 59.644 50.000 0.00 0.00 38.58 4.18
4444 4512 3.379688 ACTCCCTACGTCCGAAAATACTC 59.620 47.826 0.00 0.00 0.00 2.59
4445 4513 3.359950 ACTCCCTACGTCCGAAAATACT 58.640 45.455 0.00 0.00 0.00 2.12
4446 4514 3.790152 ACTCCCTACGTCCGAAAATAC 57.210 47.619 0.00 0.00 0.00 1.89
4447 4515 5.380043 AGATACTCCCTACGTCCGAAAATA 58.620 41.667 0.00 0.00 0.00 1.40
4448 4516 4.213513 AGATACTCCCTACGTCCGAAAAT 58.786 43.478 0.00 0.00 0.00 1.82
4449 4517 3.624777 AGATACTCCCTACGTCCGAAAA 58.375 45.455 0.00 0.00 0.00 2.29
4450 4518 3.287867 AGATACTCCCTACGTCCGAAA 57.712 47.619 0.00 0.00 0.00 3.46
4451 4519 3.287867 AAGATACTCCCTACGTCCGAA 57.712 47.619 0.00 0.00 0.00 4.30
4452 4520 3.287867 AAAGATACTCCCTACGTCCGA 57.712 47.619 0.00 0.00 0.00 4.55
4453 4521 4.110482 CAAAAAGATACTCCCTACGTCCG 58.890 47.826 0.00 0.00 0.00 4.79
4454 4522 5.334724 TCAAAAAGATACTCCCTACGTCC 57.665 43.478 0.00 0.00 0.00 4.79
4455 4523 5.291371 GCTTCAAAAAGATACTCCCTACGTC 59.709 44.000 0.00 0.00 34.14 4.34
4456 4524 5.176592 GCTTCAAAAAGATACTCCCTACGT 58.823 41.667 0.00 0.00 34.14 3.57
4457 4525 5.175859 TGCTTCAAAAAGATACTCCCTACG 58.824 41.667 0.00 0.00 34.14 3.51
4458 4526 7.631717 AATGCTTCAAAAAGATACTCCCTAC 57.368 36.000 0.00 0.00 34.14 3.18
4459 4527 7.888021 TCAAATGCTTCAAAAAGATACTCCCTA 59.112 33.333 0.00 0.00 34.14 3.53
4460 4528 6.721208 TCAAATGCTTCAAAAAGATACTCCCT 59.279 34.615 0.00 0.00 34.14 4.20
4461 4529 6.808704 GTCAAATGCTTCAAAAAGATACTCCC 59.191 38.462 0.00 0.00 34.14 4.30
4462 4530 6.808704 GGTCAAATGCTTCAAAAAGATACTCC 59.191 38.462 0.00 0.00 34.14 3.85
4463 4531 7.597386 AGGTCAAATGCTTCAAAAAGATACTC 58.403 34.615 0.00 0.00 34.14 2.59
4464 4532 7.530426 AGGTCAAATGCTTCAAAAAGATACT 57.470 32.000 0.00 0.00 34.14 2.12
4465 4533 8.593492 AAAGGTCAAATGCTTCAAAAAGATAC 57.407 30.769 0.00 0.00 34.14 2.24
4514 4582 6.238648 AGTCCGGACTTCAGAATTAAACAAT 58.761 36.000 31.69 3.01 38.83 2.71
4761 4853 2.137528 TGACAGGTTGCGGTCAGGA 61.138 57.895 0.00 0.00 39.00 3.86
4944 5095 4.378978 GCAATCAGCCAAATGTTGTACGTA 60.379 41.667 0.00 0.00 37.23 3.57
4945 5096 3.611530 GCAATCAGCCAAATGTTGTACGT 60.612 43.478 0.00 0.00 37.23 3.57
4946 5097 2.916716 GCAATCAGCCAAATGTTGTACG 59.083 45.455 0.00 0.00 37.23 3.67
4992 5150 6.429385 GCTGGGAAAGGATATGAGAAATACAG 59.571 42.308 0.00 0.00 0.00 2.74
4994 5152 6.205658 GTGCTGGGAAAGGATATGAGAAATAC 59.794 42.308 0.00 0.00 0.00 1.89
5122 5303 7.378728 GCTTGTTACAAACTCATTCTTGTTACC 59.621 37.037 0.00 0.00 35.33 2.85
5222 5457 2.605823 CGCCAAATTGTTTCTTACGGCA 60.606 45.455 0.00 0.00 38.20 5.69
5233 5468 2.095263 GTGTACATGCTCGCCAAATTGT 60.095 45.455 0.00 0.00 0.00 2.71
5290 5610 4.087892 CCCTGGAGCACGGTGAGG 62.088 72.222 13.29 9.39 0.00 3.86
5436 5792 4.514577 CCGCGGCAGGGACTACTG 62.515 72.222 14.67 0.00 41.41 2.74
5572 5928 2.945456 ACTACATGCTGGAGGACGATA 58.055 47.619 0.00 0.00 30.79 2.92
5581 5937 1.280982 CACGCACTACTACATGCTGG 58.719 55.000 0.00 0.00 39.79 4.85
5645 6001 0.266152 ACCAATCGGAGGAGGAGGAT 59.734 55.000 0.00 0.00 35.59 3.24
5646 6002 0.397254 GACCAATCGGAGGAGGAGGA 60.397 60.000 0.00 0.00 35.59 3.71
5647 6003 1.739338 CGACCAATCGGAGGAGGAGG 61.739 65.000 0.00 0.00 44.99 4.30
5648 6004 1.736586 CGACCAATCGGAGGAGGAG 59.263 63.158 0.00 0.00 44.99 3.69
5726 6082 2.158519 ACTGTTCCCCAAGGACGAAAAT 60.159 45.455 0.00 0.00 43.90 1.82
5759 6115 2.357034 GTCGTGGCCAAGAAGCGA 60.357 61.111 23.53 16.97 0.00 4.93
5816 6197 3.840666 AGGAGCTAGTGTCCATGAAGAAA 59.159 43.478 13.86 0.00 36.43 2.52
5825 6206 0.176910 GCAAGGAGGAGCTAGTGTCC 59.823 60.000 5.37 5.37 0.00 4.02
5840 6221 1.860950 CAGTTCGATATGGTCCGCAAG 59.139 52.381 0.00 0.00 0.00 4.01
5842 6223 0.529773 GCAGTTCGATATGGTCCGCA 60.530 55.000 0.00 0.00 0.00 5.69
5844 6225 1.772182 GAGCAGTTCGATATGGTCCG 58.228 55.000 15.14 0.00 37.85 4.79
5997 6378 0.172578 CAGTACGTGCCGAGAATCCA 59.827 55.000 0.00 0.00 0.00 3.41
6063 6444 1.587054 CAGGAGACACGGTGAGTCC 59.413 63.158 16.29 18.24 36.68 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.