Multiple sequence alignment - TraesCS2B01G437800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G437800 chr2B 100.000 3985 0 0 1 3985 629806726 629810710 0.000000e+00 7360.0
1 TraesCS2B01G437800 chr2B 99.476 191 1 0 1 191 195007524 195007334 8.200000e-92 348.0
2 TraesCS2B01G437800 chr2B 99.476 191 1 0 1 191 620225074 620225264 8.200000e-92 348.0
3 TraesCS2B01G437800 chr2B 94.286 35 1 1 201 235 798162889 798162856 7.000000e-03 52.8
4 TraesCS2B01G437800 chr2D 90.099 1717 108 34 190 1880 529669974 529671654 0.000000e+00 2172.0
5 TraesCS2B01G437800 chr2D 91.386 1219 62 14 1876 3089 529671683 529672863 0.000000e+00 1629.0
6 TraesCS2B01G437800 chr2D 92.095 253 14 3 3649 3899 529673258 529673506 6.340000e-93 351.0
7 TraesCS2B01G437800 chr2D 86.378 323 23 3 3232 3554 529672860 529673161 2.300000e-87 333.0
8 TraesCS2B01G437800 chr2D 97.368 76 2 0 3910 3985 529675304 529675379 3.230000e-26 130.0
9 TraesCS2B01G437800 chr2A 87.768 1447 91 33 425 1827 674506668 674508072 0.000000e+00 1613.0
10 TraesCS2B01G437800 chr2A 91.051 1218 66 14 1876 3089 674508176 674509354 0.000000e+00 1605.0
11 TraesCS2B01G437800 chr2A 86.378 323 21 3 3232 3554 674509351 674509650 8.250000e-87 331.0
12 TraesCS2B01G437800 chr2A 89.952 209 20 1 189 396 674506475 674506683 6.560000e-68 268.0
13 TraesCS2B01G437800 chr2A 87.678 211 15 5 3565 3770 674509692 674509896 6.660000e-58 235.0
14 TraesCS2B01G437800 chr2A 94.737 76 4 0 3910 3985 674510353 674510428 7.000000e-23 119.0
15 TraesCS2B01G437800 chr2A 88.119 101 8 3 3799 3899 674509896 674509992 2.520000e-22 117.0
16 TraesCS2B01G437800 chr2A 80.368 163 18 7 3085 3233 460904002 460904164 1.170000e-20 111.0
17 TraesCS2B01G437800 chr6A 98.010 201 4 0 1 201 575539496 575539696 2.280000e-92 350.0
18 TraesCS2B01G437800 chr7B 98.469 196 3 0 1 196 503365503 503365308 2.950000e-91 346.0
19 TraesCS2B01G437800 chr7B 96.078 51 2 0 3910 3960 591063107 591063057 2.550000e-12 84.2
20 TraesCS2B01G437800 chr7B 96.078 51 2 0 3910 3960 591114472 591114422 2.550000e-12 84.2
21 TraesCS2B01G437800 chr4B 98.469 196 3 0 1 196 612222442 612222637 2.950000e-91 346.0
22 TraesCS2B01G437800 chr4A 98.964 193 2 0 1 193 185428618 185428810 2.950000e-91 346.0
23 TraesCS2B01G437800 chr1A 98.000 200 3 1 1 200 342386055 342386253 2.950000e-91 346.0
24 TraesCS2B01G437800 chr1A 87.179 78 8 2 3910 3985 574488982 574489059 1.970000e-13 87.9
25 TraesCS2B01G437800 chr1A 93.103 58 2 2 3910 3966 372248499 372248443 2.550000e-12 84.2
26 TraesCS2B01G437800 chr7A 97.970 197 4 0 1 197 164783583 164783387 3.810000e-90 342.0
27 TraesCS2B01G437800 chr5B 97.512 201 4 1 1 201 144034079 144034278 3.810000e-90 342.0
28 TraesCS2B01G437800 chr3B 82.209 163 15 7 3085 3233 183594267 183594429 1.160000e-25 128.0
29 TraesCS2B01G437800 chr5A 82.390 159 14 7 3088 3232 685989859 685990017 4.180000e-25 126.0
30 TraesCS2B01G437800 chr7D 81.579 152 24 2 3086 3233 36659888 36659737 5.410000e-24 122.0
31 TraesCS2B01G437800 chr3D 80.864 162 17 7 3086 3233 604288949 604288788 9.050000e-22 115.0
32 TraesCS2B01G437800 chr3D 87.640 89 10 1 3082 3169 594366088 594366176 7.050000e-18 102.0
33 TraesCS2B01G437800 chr1D 80.117 171 20 7 3080 3236 37884071 37883901 9.050000e-22 115.0
34 TraesCS2B01G437800 chr1D 79.641 167 17 10 3083 3233 490329886 490329721 1.960000e-18 104.0
35 TraesCS2B01G437800 chr1D 87.179 78 8 2 3910 3985 478273985 478274062 1.970000e-13 87.9
36 TraesCS2B01G437800 chr1D 88.333 60 5 1 3158 3215 115016411 115016470 1.990000e-08 71.3
37 TraesCS2B01G437800 chr6D 79.191 173 20 9 3076 3233 47363634 47363463 5.450000e-19 106.0
38 TraesCS2B01G437800 chr1B 88.608 79 5 4 3910 3985 666072979 666073056 4.240000e-15 93.5
39 TraesCS2B01G437800 chr1B 87.342 79 6 4 3910 3985 665494740 665494817 1.970000e-13 87.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G437800 chr2B 629806726 629810710 3984 False 7360.000000 7360 100.000000 1 3985 1 chr2B.!!$F2 3984
1 TraesCS2B01G437800 chr2D 529669974 529675379 5405 False 923.000000 2172 91.465200 190 3985 5 chr2D.!!$F1 3795
2 TraesCS2B01G437800 chr2A 674506475 674510428 3953 False 612.571429 1613 89.383286 189 3985 7 chr2A.!!$F2 3796

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
667 677 0.109735 GCGCCCACAGTTCTTTTAGC 60.110 55.0 0.0 0.0 0.00 3.09 F
1183 1236 0.037232 CTTCCACAAGGTCTCGTCCC 60.037 60.0 0.0 0.0 35.89 4.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2037 2159 0.743688 CGTAGCATGAGAGCTCCAGT 59.256 55.0 10.93 0.0 45.26 4.00 R
3130 3256 0.687920 TTTGCTCCGTATGTGGTCCA 59.312 50.0 0.00 0.0 0.00 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 8.588290 TGGTAACATAGTTGCCTTCATTTATT 57.412 30.769 16.08 0.00 46.17 1.40
32 33 9.688091 TGGTAACATAGTTGCCTTCATTTATTA 57.312 29.630 16.08 0.00 46.17 0.98
33 34 9.946165 GGTAACATAGTTGCCTTCATTTATTAC 57.054 33.333 9.36 0.00 0.00 1.89
41 42 9.515226 AGTTGCCTTCATTTATTACTTTGTAGA 57.485 29.630 0.00 0.00 0.00 2.59
42 43 9.556030 GTTGCCTTCATTTATTACTTTGTAGAC 57.444 33.333 0.00 0.00 0.00 2.59
43 44 9.515226 TTGCCTTCATTTATTACTTTGTAGACT 57.485 29.630 0.00 0.00 0.00 3.24
44 45 9.162764 TGCCTTCATTTATTACTTTGTAGACTC 57.837 33.333 0.00 0.00 0.00 3.36
45 46 9.162764 GCCTTCATTTATTACTTTGTAGACTCA 57.837 33.333 0.00 0.00 0.00 3.41
56 57 7.325660 ACTTTGTAGACTCATTATGCATTGG 57.674 36.000 3.54 0.00 0.00 3.16
57 58 7.112122 ACTTTGTAGACTCATTATGCATTGGA 58.888 34.615 3.54 0.00 0.00 3.53
58 59 7.611467 ACTTTGTAGACTCATTATGCATTGGAA 59.389 33.333 3.54 0.00 0.00 3.53
59 60 7.936496 TTGTAGACTCATTATGCATTGGAAA 57.064 32.000 3.54 0.00 0.00 3.13
60 61 7.320443 TGTAGACTCATTATGCATTGGAAAC 57.680 36.000 3.54 0.00 0.00 2.78
61 62 5.841957 AGACTCATTATGCATTGGAAACC 57.158 39.130 3.54 0.00 0.00 3.27
62 63 4.336433 AGACTCATTATGCATTGGAAACCG 59.664 41.667 3.54 0.00 0.00 4.44
63 64 3.181487 ACTCATTATGCATTGGAAACCGC 60.181 43.478 3.54 0.00 0.00 5.68
64 65 3.023119 TCATTATGCATTGGAAACCGCT 58.977 40.909 3.54 0.00 0.00 5.52
65 66 4.203226 TCATTATGCATTGGAAACCGCTA 58.797 39.130 3.54 0.00 0.00 4.26
66 67 4.826733 TCATTATGCATTGGAAACCGCTAT 59.173 37.500 3.54 0.00 0.00 2.97
67 68 4.566545 TTATGCATTGGAAACCGCTATG 57.433 40.909 3.54 0.00 0.00 2.23
68 69 1.832883 TGCATTGGAAACCGCTATGT 58.167 45.000 0.00 0.00 0.00 2.29
69 70 1.472082 TGCATTGGAAACCGCTATGTG 59.528 47.619 0.00 0.00 0.00 3.21
70 71 1.742831 GCATTGGAAACCGCTATGTGA 59.257 47.619 0.00 0.00 0.00 3.58
71 72 2.358898 GCATTGGAAACCGCTATGTGAT 59.641 45.455 0.00 0.00 0.00 3.06
72 73 3.793129 GCATTGGAAACCGCTATGTGATG 60.793 47.826 0.00 0.00 0.00 3.07
73 74 2.036958 TGGAAACCGCTATGTGATGG 57.963 50.000 0.00 0.00 0.00 3.51
74 75 1.280710 TGGAAACCGCTATGTGATGGT 59.719 47.619 0.00 0.00 35.90 3.55
75 76 2.502130 TGGAAACCGCTATGTGATGGTA 59.498 45.455 0.00 0.00 33.45 3.25
76 77 3.055021 TGGAAACCGCTATGTGATGGTAA 60.055 43.478 0.00 0.00 33.45 2.85
77 78 3.311596 GGAAACCGCTATGTGATGGTAAC 59.688 47.826 0.00 0.00 33.45 2.50
106 107 5.599999 TGTTACTCTATTTGCCTCTCTCC 57.400 43.478 0.00 0.00 0.00 3.71
107 108 5.273208 TGTTACTCTATTTGCCTCTCTCCT 58.727 41.667 0.00 0.00 0.00 3.69
108 109 5.361285 TGTTACTCTATTTGCCTCTCTCCTC 59.639 44.000 0.00 0.00 0.00 3.71
109 110 3.987745 ACTCTATTTGCCTCTCTCCTCA 58.012 45.455 0.00 0.00 0.00 3.86
110 111 4.555689 ACTCTATTTGCCTCTCTCCTCAT 58.444 43.478 0.00 0.00 0.00 2.90
111 112 4.968080 ACTCTATTTGCCTCTCTCCTCATT 59.032 41.667 0.00 0.00 0.00 2.57
112 113 6.139671 ACTCTATTTGCCTCTCTCCTCATTA 58.860 40.000 0.00 0.00 0.00 1.90
113 114 6.613271 ACTCTATTTGCCTCTCTCCTCATTAA 59.387 38.462 0.00 0.00 0.00 1.40
114 115 6.821388 TCTATTTGCCTCTCTCCTCATTAAC 58.179 40.000 0.00 0.00 0.00 2.01
115 116 5.707066 ATTTGCCTCTCTCCTCATTAACT 57.293 39.130 0.00 0.00 0.00 2.24
116 117 6.814954 ATTTGCCTCTCTCCTCATTAACTA 57.185 37.500 0.00 0.00 0.00 2.24
117 118 5.599999 TTGCCTCTCTCCTCATTAACTAC 57.400 43.478 0.00 0.00 0.00 2.73
118 119 4.873010 TGCCTCTCTCCTCATTAACTACT 58.127 43.478 0.00 0.00 0.00 2.57
119 120 5.273208 TGCCTCTCTCCTCATTAACTACTT 58.727 41.667 0.00 0.00 0.00 2.24
120 121 5.127845 TGCCTCTCTCCTCATTAACTACTTG 59.872 44.000 0.00 0.00 0.00 3.16
121 122 5.596845 CCTCTCTCCTCATTAACTACTTGC 58.403 45.833 0.00 0.00 0.00 4.01
122 123 5.452636 CCTCTCTCCTCATTAACTACTTGCC 60.453 48.000 0.00 0.00 0.00 4.52
123 124 5.023452 TCTCTCCTCATTAACTACTTGCCA 58.977 41.667 0.00 0.00 0.00 4.92
124 125 5.086104 TCTCCTCATTAACTACTTGCCAC 57.914 43.478 0.00 0.00 0.00 5.01
125 126 4.530553 TCTCCTCATTAACTACTTGCCACA 59.469 41.667 0.00 0.00 0.00 4.17
126 127 5.189736 TCTCCTCATTAACTACTTGCCACAT 59.810 40.000 0.00 0.00 0.00 3.21
127 128 5.428253 TCCTCATTAACTACTTGCCACATC 58.572 41.667 0.00 0.00 0.00 3.06
128 129 5.045942 TCCTCATTAACTACTTGCCACATCA 60.046 40.000 0.00 0.00 0.00 3.07
129 130 5.824624 CCTCATTAACTACTTGCCACATCAT 59.175 40.000 0.00 0.00 0.00 2.45
130 131 6.017605 CCTCATTAACTACTTGCCACATCATC 60.018 42.308 0.00 0.00 0.00 2.92
131 132 6.413892 TCATTAACTACTTGCCACATCATCA 58.586 36.000 0.00 0.00 0.00 3.07
132 133 6.883756 TCATTAACTACTTGCCACATCATCAA 59.116 34.615 0.00 0.00 0.00 2.57
133 134 7.557358 TCATTAACTACTTGCCACATCATCAAT 59.443 33.333 0.00 0.00 0.00 2.57
134 135 7.701539 TTAACTACTTGCCACATCATCAATT 57.298 32.000 0.00 0.00 0.00 2.32
135 136 6.594788 AACTACTTGCCACATCATCAATTT 57.405 33.333 0.00 0.00 0.00 1.82
136 137 6.594788 ACTACTTGCCACATCATCAATTTT 57.405 33.333 0.00 0.00 0.00 1.82
137 138 6.392354 ACTACTTGCCACATCATCAATTTTG 58.608 36.000 0.00 0.00 0.00 2.44
138 139 3.998341 ACTTGCCACATCATCAATTTTGC 59.002 39.130 0.00 0.00 0.00 3.68
139 140 3.965379 TGCCACATCATCAATTTTGCT 57.035 38.095 0.00 0.00 0.00 3.91
140 141 4.274602 TGCCACATCATCAATTTTGCTT 57.725 36.364 0.00 0.00 0.00 3.91
141 142 5.402997 TGCCACATCATCAATTTTGCTTA 57.597 34.783 0.00 0.00 0.00 3.09
142 143 5.979993 TGCCACATCATCAATTTTGCTTAT 58.020 33.333 0.00 0.00 0.00 1.73
143 144 5.813157 TGCCACATCATCAATTTTGCTTATG 59.187 36.000 0.00 0.00 0.00 1.90
144 145 5.813672 GCCACATCATCAATTTTGCTTATGT 59.186 36.000 0.00 0.00 0.00 2.29
145 146 6.237996 GCCACATCATCAATTTTGCTTATGTG 60.238 38.462 11.65 11.65 38.83 3.21
146 147 6.256975 CCACATCATCAATTTTGCTTATGTGG 59.743 38.462 18.59 18.59 44.59 4.17
147 148 5.813672 ACATCATCAATTTTGCTTATGTGGC 59.186 36.000 0.00 0.00 0.00 5.01
148 149 5.402997 TCATCAATTTTGCTTATGTGGCA 57.597 34.783 0.00 0.00 37.97 4.92
149 150 5.979993 TCATCAATTTTGCTTATGTGGCAT 58.020 33.333 0.00 0.00 39.54 4.40
150 151 6.044046 TCATCAATTTTGCTTATGTGGCATC 58.956 36.000 0.00 0.00 39.54 3.91
151 152 5.664294 TCAATTTTGCTTATGTGGCATCT 57.336 34.783 0.00 0.00 39.54 2.90
152 153 6.772360 TCAATTTTGCTTATGTGGCATCTA 57.228 33.333 0.00 0.00 39.54 1.98
153 154 7.350744 TCAATTTTGCTTATGTGGCATCTAT 57.649 32.000 0.00 0.00 39.54 1.98
154 155 7.204604 TCAATTTTGCTTATGTGGCATCTATG 58.795 34.615 0.00 0.00 39.54 2.23
155 156 6.720112 ATTTTGCTTATGTGGCATCTATGT 57.280 33.333 0.00 0.00 39.54 2.29
156 157 6.528537 TTTTGCTTATGTGGCATCTATGTT 57.471 33.333 0.00 0.00 39.54 2.71
157 158 7.637631 TTTTGCTTATGTGGCATCTATGTTA 57.362 32.000 0.00 0.00 39.54 2.41
158 159 6.618287 TTGCTTATGTGGCATCTATGTTAC 57.382 37.500 0.00 0.00 39.54 2.50
159 160 5.928976 TGCTTATGTGGCATCTATGTTACT 58.071 37.500 0.00 0.00 34.56 2.24
160 161 7.061566 TGCTTATGTGGCATCTATGTTACTA 57.938 36.000 0.00 0.00 34.56 1.82
161 162 6.929049 TGCTTATGTGGCATCTATGTTACTAC 59.071 38.462 0.00 0.00 34.56 2.73
162 163 6.369065 GCTTATGTGGCATCTATGTTACTACC 59.631 42.308 0.00 0.00 0.00 3.18
163 164 7.612065 TTATGTGGCATCTATGTTACTACCT 57.388 36.000 0.00 0.00 0.00 3.08
164 165 8.715190 TTATGTGGCATCTATGTTACTACCTA 57.285 34.615 0.00 0.00 0.00 3.08
165 166 7.798710 ATGTGGCATCTATGTTACTACCTAT 57.201 36.000 0.00 0.00 0.00 2.57
166 167 6.993079 TGTGGCATCTATGTTACTACCTATG 58.007 40.000 0.00 0.00 0.00 2.23
167 168 6.553476 TGTGGCATCTATGTTACTACCTATGT 59.447 38.462 0.00 0.00 0.00 2.29
168 169 7.070696 TGTGGCATCTATGTTACTACCTATGTT 59.929 37.037 0.00 0.00 0.00 2.71
169 170 8.582437 GTGGCATCTATGTTACTACCTATGTTA 58.418 37.037 0.00 0.00 0.00 2.41
170 171 8.582437 TGGCATCTATGTTACTACCTATGTTAC 58.418 37.037 0.00 0.00 0.00 2.50
171 172 8.804204 GGCATCTATGTTACTACCTATGTTACT 58.196 37.037 0.00 0.00 0.00 2.24
172 173 9.843334 GCATCTATGTTACTACCTATGTTACTC 57.157 37.037 0.00 0.00 0.00 2.59
174 175 8.930846 TCTATGTTACTACCTATGTTACTCCC 57.069 38.462 0.00 0.00 0.00 4.30
175 176 8.505246 TCTATGTTACTACCTATGTTACTCCCA 58.495 37.037 0.00 0.00 0.00 4.37
176 177 6.780457 TGTTACTACCTATGTTACTCCCAC 57.220 41.667 0.00 0.00 0.00 4.61
177 178 6.496743 TGTTACTACCTATGTTACTCCCACT 58.503 40.000 0.00 0.00 0.00 4.00
178 179 7.642186 TGTTACTACCTATGTTACTCCCACTA 58.358 38.462 0.00 0.00 0.00 2.74
179 180 8.284435 TGTTACTACCTATGTTACTCCCACTAT 58.716 37.037 0.00 0.00 0.00 2.12
180 181 8.574737 GTTACTACCTATGTTACTCCCACTATG 58.425 40.741 0.00 0.00 0.00 2.23
181 182 6.919158 ACTACCTATGTTACTCCCACTATGA 58.081 40.000 0.00 0.00 0.00 2.15
182 183 6.776603 ACTACCTATGTTACTCCCACTATGAC 59.223 42.308 0.00 0.00 0.00 3.06
183 184 4.900054 ACCTATGTTACTCCCACTATGACC 59.100 45.833 0.00 0.00 0.00 4.02
184 185 4.899457 CCTATGTTACTCCCACTATGACCA 59.101 45.833 0.00 0.00 0.00 4.02
185 186 5.365605 CCTATGTTACTCCCACTATGACCAA 59.634 44.000 0.00 0.00 0.00 3.67
186 187 4.546829 TGTTACTCCCACTATGACCAAC 57.453 45.455 0.00 0.00 0.00 3.77
187 188 3.262405 TGTTACTCCCACTATGACCAACC 59.738 47.826 0.00 0.00 0.00 3.77
265 266 0.109919 GCTTTAAACTGGAACCGCCG 60.110 55.000 0.00 0.00 40.66 6.46
277 278 0.320771 AACCGCCGAGGCATCATATC 60.321 55.000 15.03 0.00 46.52 1.63
290 291 5.692204 AGGCATCATATCTTCGTACGAAAAG 59.308 40.000 28.82 19.52 33.34 2.27
306 307 9.559958 CGTACGAAAAGTAAGAAGGATAAGTTA 57.440 33.333 10.44 0.00 37.03 2.24
309 310 9.420551 ACGAAAAGTAAGAAGGATAAGTTACTG 57.579 33.333 0.00 0.00 36.17 2.74
378 380 4.879104 TGGCATTTGCAACTTTTCTTTG 57.121 36.364 0.00 0.00 44.36 2.77
385 387 1.490621 CAACTTTTCTTTGCCGGCAG 58.509 50.000 30.75 19.71 0.00 4.85
393 395 0.667993 CTTTGCCGGCAGTTTCTTCA 59.332 50.000 30.75 9.52 0.00 3.02
396 398 0.884704 TGCCGGCAGTTTCTTCAGAC 60.885 55.000 29.03 0.00 0.00 3.51
409 411 8.188799 CAGTTTCTTCAGACATGCATGATATTT 58.811 33.333 32.75 10.28 0.00 1.40
509 512 9.445786 CGTAACTAAAACTGTCATCAAAATGTT 57.554 29.630 0.00 0.00 34.32 2.71
517 520 7.220599 ACTGTCATCAAAATGTTTTCGTTTG 57.779 32.000 0.00 0.00 38.78 2.93
518 521 6.811170 ACTGTCATCAAAATGTTTTCGTTTGT 59.189 30.769 0.00 0.00 38.78 2.83
519 522 7.009174 ACTGTCATCAAAATGTTTTCGTTTGTC 59.991 33.333 0.00 0.00 38.78 3.18
520 523 6.021074 TGTCATCAAAATGTTTTCGTTTGTCG 60.021 34.615 0.00 0.00 38.78 4.35
521 524 6.020995 GTCATCAAAATGTTTTCGTTTGTCGT 60.021 34.615 0.00 0.00 38.78 4.34
539 544 1.157751 TCCCCTCCCAGAGAACGTT 59.842 57.895 0.00 0.00 0.00 3.99
575 580 6.920569 ATTCCGGTCTTTATGTGTACATTC 57.079 37.500 0.00 0.00 37.76 2.67
577 582 6.045072 TCCGGTCTTTATGTGTACATTCTT 57.955 37.500 0.00 0.00 37.76 2.52
578 583 6.103997 TCCGGTCTTTATGTGTACATTCTTC 58.896 40.000 0.00 0.00 37.76 2.87
582 587 8.504005 CGGTCTTTATGTGTACATTCTTCTTTT 58.496 33.333 0.00 0.00 37.76 2.27
618 624 6.292114 CCAAAACTTGAAAATACGCTTTCACC 60.292 38.462 7.26 0.00 43.29 4.02
657 667 0.313987 TAGATCATACGCGCCCACAG 59.686 55.000 5.73 0.00 0.00 3.66
665 675 0.533308 ACGCGCCCACAGTTCTTTTA 60.533 50.000 5.73 0.00 0.00 1.52
666 676 0.165944 CGCGCCCACAGTTCTTTTAG 59.834 55.000 0.00 0.00 0.00 1.85
667 677 0.109735 GCGCCCACAGTTCTTTTAGC 60.110 55.000 0.00 0.00 0.00 3.09
713 723 2.038557 CACCTACCACAAGCTACAACCT 59.961 50.000 0.00 0.00 0.00 3.50
714 724 2.038557 ACCTACCACAAGCTACAACCTG 59.961 50.000 0.00 0.00 0.00 4.00
715 725 2.615493 CCTACCACAAGCTACAACCTGG 60.615 54.545 0.00 0.00 0.00 4.45
716 726 0.110486 ACCACAAGCTACAACCTGGG 59.890 55.000 0.00 0.00 0.00 4.45
717 727 0.609131 CCACAAGCTACAACCTGGGG 60.609 60.000 0.00 0.00 0.00 4.96
718 728 0.110486 CACAAGCTACAACCTGGGGT 59.890 55.000 0.00 0.00 37.65 4.95
860 901 2.302952 CCGCTATCATCCGTGCACG 61.303 63.158 31.77 31.77 39.44 5.34
1183 1236 0.037232 CTTCCACAAGGTCTCGTCCC 60.037 60.000 0.00 0.00 35.89 4.46
1184 1237 1.477685 TTCCACAAGGTCTCGTCCCC 61.478 60.000 0.00 0.00 35.89 4.81
1185 1238 2.663196 CACAAGGTCTCGTCCCCC 59.337 66.667 0.00 0.00 0.00 5.40
1186 1239 2.995574 ACAAGGTCTCGTCCCCCG 60.996 66.667 0.00 0.00 38.13 5.73
1187 1240 3.771160 CAAGGTCTCGTCCCCCGG 61.771 72.222 0.00 0.00 37.11 5.73
1212 1265 0.171903 CGGCTTCCCTTTGCTGATTG 59.828 55.000 0.00 0.00 37.75 2.67
1224 1278 1.527034 GCTGATTGCACTTGTCCTGA 58.473 50.000 0.00 0.00 42.31 3.86
1248 1302 7.554118 TGAATTGATTTGACTCTGGGTAGATTC 59.446 37.037 0.00 0.00 34.25 2.52
1249 1303 5.359194 TGATTTGACTCTGGGTAGATTCC 57.641 43.478 0.00 0.00 33.08 3.01
1250 1304 3.887621 TTTGACTCTGGGTAGATTCCG 57.112 47.619 0.00 0.00 33.08 4.30
1251 1305 1.776662 TGACTCTGGGTAGATTCCGG 58.223 55.000 0.00 0.00 33.08 5.14
1252 1306 1.286849 TGACTCTGGGTAGATTCCGGA 59.713 52.381 0.00 0.00 37.34 5.14
1253 1307 2.091278 TGACTCTGGGTAGATTCCGGAT 60.091 50.000 4.15 0.00 38.82 4.18
1254 1308 2.966516 GACTCTGGGTAGATTCCGGATT 59.033 50.000 4.15 0.01 38.82 3.01
1255 1309 3.385115 ACTCTGGGTAGATTCCGGATTT 58.615 45.455 4.15 0.00 38.82 2.17
1256 1310 3.388350 ACTCTGGGTAGATTCCGGATTTC 59.612 47.826 4.15 5.82 38.82 2.17
1299 1353 1.154197 GTCGTTTAGGGTGAAGGTGC 58.846 55.000 0.00 0.00 0.00 5.01
1313 1367 1.745489 GGTGCGGTCTTTAGCCCTG 60.745 63.158 0.00 0.00 0.00 4.45
1335 1389 0.645868 GGTTTCGAGATTTCCGCGAG 59.354 55.000 8.23 0.00 46.98 5.03
1342 1396 0.320771 AGATTTCCGCGAGCTTGTGT 60.321 50.000 8.23 0.00 0.00 3.72
1391 1445 0.452987 CATGATCTTTGTGGCCACGG 59.547 55.000 30.07 21.54 0.00 4.94
1392 1446 1.315257 ATGATCTTTGTGGCCACGGC 61.315 55.000 30.07 15.35 41.06 5.68
1410 1464 1.404986 GGCCACGATGTACTAGCACAA 60.405 52.381 0.00 0.00 30.84 3.33
1537 1591 0.112995 AATTGGTGAAGCTGCCAGGA 59.887 50.000 0.00 0.00 36.00 3.86
1543 1597 1.055849 TGAAGCTGCCAGGACAAGTA 58.944 50.000 0.00 0.00 0.00 2.24
1613 1668 8.495949 AGAAGATAAAAACTGAACGTGTACATG 58.504 33.333 13.64 13.64 0.00 3.21
1632 1694 2.833794 TGGCATTTCCGATGTACTAGC 58.166 47.619 0.00 0.00 37.80 3.42
1642 1704 2.935849 CGATGTACTAGCCAACAATGCA 59.064 45.455 0.00 0.00 0.00 3.96
1653 1715 3.533547 CCAACAATGCATAAACCATGGG 58.466 45.455 18.09 0.00 34.97 4.00
1702 1764 3.194062 GCTCTGAACCATCTAGCACTTC 58.806 50.000 0.00 0.00 36.14 3.01
1730 1792 2.432146 GCCTGACTGATACATCTGACCA 59.568 50.000 3.43 1.27 0.00 4.02
1769 1831 5.734720 TGAATGGACTGTTTCTATGGAGAC 58.265 41.667 0.00 0.00 0.00 3.36
1851 1939 7.654923 TGATGATCTAGTATGTGCATGAGAAAC 59.345 37.037 0.00 0.00 0.00 2.78
1870 1958 2.790433 ACAAATGTGCCCTGTTACGAT 58.210 42.857 0.00 0.00 0.00 3.73
1874 1962 1.794222 GTGCCCTGTTACGATGCAC 59.206 57.895 7.06 7.06 44.53 4.57
1880 1968 2.143122 CCTGTTACGATGCACACTGTT 58.857 47.619 0.00 0.00 0.00 3.16
1883 1971 2.939756 TGTTACGATGCACACTGTTGTT 59.060 40.909 0.00 0.00 31.66 2.83
1885 1973 1.378531 ACGATGCACACTGTTGTTGT 58.621 45.000 0.00 0.00 31.66 3.32
1886 1974 1.063912 ACGATGCACACTGTTGTTGTG 59.936 47.619 0.00 0.00 40.87 3.33
1888 1976 2.286563 CGATGCACACTGTTGTTGTGTA 59.713 45.455 4.53 0.28 45.56 2.90
1902 2024 8.684386 TGTTGTTGTGTATTCTCTGGAATAAA 57.316 30.769 0.81 0.00 43.43 1.40
1927 2049 9.561069 AATACTCCTGACATCATTTATTGTACC 57.439 33.333 0.00 0.00 0.00 3.34
2015 2137 2.149578 GCAGAAGAGTGCACATCTGTT 58.850 47.619 30.81 15.08 43.41 3.16
2037 2159 2.552743 CTCGAGTTGGATACCGAGCATA 59.447 50.000 3.62 0.00 39.19 3.14
2108 2230 2.868583 CCAGTCGGCTCTATTTGATGTG 59.131 50.000 0.00 0.00 0.00 3.21
2208 2330 7.194607 TGCTTCTTTAACTGAATCTGTTCTG 57.805 36.000 8.77 2.12 38.72 3.02
2209 2331 6.082984 GCTTCTTTAACTGAATCTGTTCTGC 58.917 40.000 8.77 3.40 36.94 4.26
2210 2332 6.072783 GCTTCTTTAACTGAATCTGTTCTGCT 60.073 38.462 8.77 0.00 36.94 4.24
2211 2333 7.118390 GCTTCTTTAACTGAATCTGTTCTGCTA 59.882 37.037 8.77 0.00 36.94 3.49
2212 2334 8.902540 TTCTTTAACTGAATCTGTTCTGCTAA 57.097 30.769 8.77 0.00 36.94 3.09
2213 2335 8.902540 TCTTTAACTGAATCTGTTCTGCTAAA 57.097 30.769 8.77 3.87 36.94 1.85
2214 2336 8.993121 TCTTTAACTGAATCTGTTCTGCTAAAG 58.007 33.333 8.77 12.02 43.80 1.85
2215 2337 8.677148 TTTAACTGAATCTGTTCTGCTAAAGT 57.323 30.769 8.77 0.00 36.94 2.66
2216 2338 6.793492 AACTGAATCTGTTCTGCTAAAGTC 57.207 37.500 0.00 0.00 36.94 3.01
2217 2339 6.107901 ACTGAATCTGTTCTGCTAAAGTCT 57.892 37.500 0.00 0.00 36.94 3.24
2242 2364 6.603095 AGTTTCTTGCATAAGCTTTACTTCG 58.397 36.000 3.20 0.00 42.74 3.79
2253 2375 2.762472 CTTTACTTCGAATGCAGTGCG 58.238 47.619 11.20 0.00 0.00 5.34
2262 2384 0.661552 AATGCAGTGCGATCAGATGC 59.338 50.000 11.20 0.00 36.91 3.91
2287 2411 9.245481 GCAAGTATATAAGTACAGAGATACCCT 57.755 37.037 0.00 0.00 0.00 4.34
2337 2462 6.719370 AGGAATAGAACATGGCTTTGTTGTTA 59.281 34.615 10.41 4.83 39.85 2.41
2338 2463 7.397192 AGGAATAGAACATGGCTTTGTTGTTAT 59.603 33.333 10.41 6.47 39.85 1.89
2340 2465 5.789643 AGAACATGGCTTTGTTGTTATGT 57.210 34.783 10.41 0.00 39.85 2.29
2341 2466 6.160576 AGAACATGGCTTTGTTGTTATGTT 57.839 33.333 10.41 0.00 39.85 2.71
2342 2467 5.984926 AGAACATGGCTTTGTTGTTATGTTG 59.015 36.000 10.41 0.00 39.85 3.33
2343 2468 5.275067 ACATGGCTTTGTTGTTATGTTGT 57.725 34.783 0.00 0.00 0.00 3.32
2344 2469 6.398234 ACATGGCTTTGTTGTTATGTTGTA 57.602 33.333 0.00 0.00 0.00 2.41
2345 2470 6.991938 ACATGGCTTTGTTGTTATGTTGTAT 58.008 32.000 0.00 0.00 0.00 2.29
2346 2471 7.441017 ACATGGCTTTGTTGTTATGTTGTATT 58.559 30.769 0.00 0.00 0.00 1.89
2347 2472 7.598493 ACATGGCTTTGTTGTTATGTTGTATTC 59.402 33.333 0.00 0.00 0.00 1.75
2348 2473 6.146216 TGGCTTTGTTGTTATGTTGTATTCG 58.854 36.000 0.00 0.00 0.00 3.34
2349 2474 6.017026 TGGCTTTGTTGTTATGTTGTATTCGA 60.017 34.615 0.00 0.00 0.00 3.71
2350 2475 6.858993 GGCTTTGTTGTTATGTTGTATTCGAA 59.141 34.615 0.00 0.00 0.00 3.71
2351 2476 7.149031 GGCTTTGTTGTTATGTTGTATTCGAAC 60.149 37.037 0.00 0.00 0.00 3.95
2352 2477 7.377397 GCTTTGTTGTTATGTTGTATTCGAACA 59.623 33.333 0.00 0.00 37.70 3.18
2353 2478 9.393249 CTTTGTTGTTATGTTGTATTCGAACAT 57.607 29.630 0.00 2.01 44.40 2.71
2397 2522 0.953727 TTGGCAGTTGACATCAGTGC 59.046 50.000 8.94 8.94 37.09 4.40
2444 2569 6.258230 TGTTGGATGCTCAAACAATTCTAG 57.742 37.500 4.28 0.00 0.00 2.43
2447 2572 4.397103 TGGATGCTCAAACAATTCTAGCTG 59.603 41.667 0.00 0.00 34.28 4.24
2450 2575 5.772825 TGCTCAAACAATTCTAGCTGTTT 57.227 34.783 0.00 10.06 44.53 2.83
2455 2580 7.862873 GCTCAAACAATTCTAGCTGTTTAGTTT 59.137 33.333 13.63 0.00 42.41 2.66
2467 2592 5.758784 AGCTGTTTAGTTTACTGACCAAGTC 59.241 40.000 0.00 0.00 40.56 3.01
2469 2594 6.927381 GCTGTTTAGTTTACTGACCAAGTCTA 59.073 38.462 0.00 0.00 40.56 2.59
2473 2598 8.976471 GTTTAGTTTACTGACCAAGTCTAACTC 58.024 37.037 8.38 0.00 40.41 3.01
2477 2602 4.399483 ACTGACCAAGTCTAACTCCCTA 57.601 45.455 0.00 0.00 31.64 3.53
2481 2606 5.590818 TGACCAAGTCTAACTCCCTATCTT 58.409 41.667 0.00 0.00 33.15 2.40
2485 2610 6.272558 ACCAAGTCTAACTCCCTATCTTTTGT 59.727 38.462 0.00 0.00 0.00 2.83
2513 2638 4.585955 TTGAACTTCGAAGTCACTAGCT 57.414 40.909 29.82 13.45 38.57 3.32
2571 2696 7.060383 ACTGAAGAAGACAAAGAAGATCTGA 57.940 36.000 0.00 0.00 0.00 3.27
2582 2707 6.261826 ACAAAGAAGATCTGACACCAAAAGAG 59.738 38.462 0.00 0.00 0.00 2.85
2634 2759 4.276926 AGTCTGATCAACCTTCTGCAAAAC 59.723 41.667 0.00 0.00 0.00 2.43
2699 2824 1.210204 TGCCTCCCAATCTGCCTTCT 61.210 55.000 0.00 0.00 0.00 2.85
2780 2905 4.065789 AGAAACCTTTAACAGAAGCTCCG 58.934 43.478 0.00 0.00 0.00 4.63
2823 2948 1.029681 GCCTTCAAAACCCGAGTGTT 58.970 50.000 0.00 0.00 0.00 3.32
2963 3088 8.458843 CGGTATAAATTCAAAGTCAGAACCATT 58.541 33.333 0.00 0.00 0.00 3.16
3054 3180 4.471904 TTGACAGCATCCCTACTAACTG 57.528 45.455 0.00 0.00 0.00 3.16
3061 3187 3.104512 CATCCCTACTAACTGTGGTCCA 58.895 50.000 0.00 0.00 0.00 4.02
3083 3209 5.411361 CCAATCTGTTCGGTTACATCTTGAA 59.589 40.000 0.00 0.00 0.00 2.69
3085 3211 7.362056 CCAATCTGTTCGGTTACATCTTGAAAT 60.362 37.037 0.00 0.00 0.00 2.17
3086 3212 8.664798 CAATCTGTTCGGTTACATCTTGAAATA 58.335 33.333 0.00 0.00 0.00 1.40
3087 3213 7.591006 TCTGTTCGGTTACATCTTGAAATAC 57.409 36.000 0.00 0.00 0.00 1.89
3088 3214 7.383687 TCTGTTCGGTTACATCTTGAAATACT 58.616 34.615 0.00 0.00 0.00 2.12
3089 3215 7.544566 TCTGTTCGGTTACATCTTGAAATACTC 59.455 37.037 0.00 0.00 0.00 2.59
3090 3216 6.592607 TGTTCGGTTACATCTTGAAATACTCC 59.407 38.462 0.00 0.00 0.00 3.85
3091 3217 5.667466 TCGGTTACATCTTGAAATACTCCC 58.333 41.667 0.00 0.00 0.00 4.30
3092 3218 5.424252 TCGGTTACATCTTGAAATACTCCCT 59.576 40.000 0.00 0.00 0.00 4.20
3093 3219 5.753921 CGGTTACATCTTGAAATACTCCCTC 59.246 44.000 0.00 0.00 0.00 4.30
3094 3220 5.753921 GGTTACATCTTGAAATACTCCCTCG 59.246 44.000 0.00 0.00 0.00 4.63
3095 3221 4.408182 ACATCTTGAAATACTCCCTCGG 57.592 45.455 0.00 0.00 0.00 4.63
3096 3222 3.775316 ACATCTTGAAATACTCCCTCGGT 59.225 43.478 0.00 0.00 0.00 4.69
3097 3223 4.225267 ACATCTTGAAATACTCCCTCGGTT 59.775 41.667 0.00 0.00 0.00 4.44
3098 3224 4.467198 TCTTGAAATACTCCCTCGGTTC 57.533 45.455 0.00 0.00 0.00 3.62
3099 3225 3.197116 TCTTGAAATACTCCCTCGGTTCC 59.803 47.826 0.00 0.00 0.00 3.62
3100 3226 2.829023 TGAAATACTCCCTCGGTTCCT 58.171 47.619 0.00 0.00 0.00 3.36
3101 3227 3.985127 TGAAATACTCCCTCGGTTCCTA 58.015 45.455 0.00 0.00 0.00 2.94
3102 3228 4.355549 TGAAATACTCCCTCGGTTCCTAA 58.644 43.478 0.00 0.00 0.00 2.69
3103 3229 4.778958 TGAAATACTCCCTCGGTTCCTAAA 59.221 41.667 0.00 0.00 0.00 1.85
3104 3230 5.427481 TGAAATACTCCCTCGGTTCCTAAAT 59.573 40.000 0.00 0.00 0.00 1.40
3105 3231 6.612456 TGAAATACTCCCTCGGTTCCTAAATA 59.388 38.462 0.00 0.00 0.00 1.40
3106 3232 7.291651 TGAAATACTCCCTCGGTTCCTAAATAT 59.708 37.037 0.00 0.00 0.00 1.28
3107 3233 8.731591 AAATACTCCCTCGGTTCCTAAATATA 57.268 34.615 0.00 0.00 0.00 0.86
3108 3234 8.731591 AATACTCCCTCGGTTCCTAAATATAA 57.268 34.615 0.00 0.00 0.00 0.98
3109 3235 6.667558 ACTCCCTCGGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
3110 3236 6.141790 ACTCCCTCGGTTCCTAAATATAAGT 58.858 40.000 0.00 0.00 0.00 2.24
3111 3237 6.267242 ACTCCCTCGGTTCCTAAATATAAGTC 59.733 42.308 0.00 0.00 0.00 3.01
3112 3238 6.379579 TCCCTCGGTTCCTAAATATAAGTCT 58.620 40.000 0.00 0.00 0.00 3.24
3113 3239 6.267014 TCCCTCGGTTCCTAAATATAAGTCTG 59.733 42.308 0.00 0.00 0.00 3.51
3114 3240 6.041751 CCCTCGGTTCCTAAATATAAGTCTGT 59.958 42.308 0.00 0.00 0.00 3.41
3115 3241 7.418712 CCCTCGGTTCCTAAATATAAGTCTGTT 60.419 40.741 0.00 0.00 0.00 3.16
3116 3242 7.985752 CCTCGGTTCCTAAATATAAGTCTGTTT 59.014 37.037 0.00 0.00 0.00 2.83
3132 3258 7.703058 AGTCTGTTTAAAGGTTCCAATATGG 57.297 36.000 0.00 0.00 39.43 2.74
3133 3259 7.466804 AGTCTGTTTAAAGGTTCCAATATGGA 58.533 34.615 0.00 0.00 46.61 3.41
3143 3269 3.762407 TCCAATATGGACCACATACGG 57.238 47.619 0.00 0.00 42.67 4.02
3144 3270 3.310193 TCCAATATGGACCACATACGGA 58.690 45.455 0.00 0.00 42.67 4.69
3145 3271 3.323691 TCCAATATGGACCACATACGGAG 59.676 47.826 0.00 0.00 42.67 4.63
3146 3272 3.067106 CAATATGGACCACATACGGAGC 58.933 50.000 0.00 0.00 44.41 4.70
3147 3273 1.783071 TATGGACCACATACGGAGCA 58.217 50.000 0.00 0.00 41.03 4.26
3148 3274 0.908910 ATGGACCACATACGGAGCAA 59.091 50.000 0.00 0.00 38.26 3.91
3149 3275 0.687920 TGGACCACATACGGAGCAAA 59.312 50.000 0.00 0.00 0.00 3.68
3150 3276 1.072489 TGGACCACATACGGAGCAAAA 59.928 47.619 0.00 0.00 0.00 2.44
3151 3277 2.290641 TGGACCACATACGGAGCAAAAT 60.291 45.455 0.00 0.00 0.00 1.82
3152 3278 2.097466 GGACCACATACGGAGCAAAATG 59.903 50.000 0.00 0.00 0.00 2.32
3153 3279 3.006940 GACCACATACGGAGCAAAATGA 58.993 45.455 0.00 0.00 0.00 2.57
3154 3280 3.009723 ACCACATACGGAGCAAAATGAG 58.990 45.455 0.00 0.00 0.00 2.90
3155 3281 3.009723 CCACATACGGAGCAAAATGAGT 58.990 45.455 0.00 0.00 0.00 3.41
3156 3282 3.181507 CCACATACGGAGCAAAATGAGTG 60.182 47.826 0.00 0.00 0.00 3.51
3157 3283 3.684305 CACATACGGAGCAAAATGAGTGA 59.316 43.478 0.00 0.00 0.00 3.41
3158 3284 4.154015 CACATACGGAGCAAAATGAGTGAA 59.846 41.667 0.00 0.00 0.00 3.18
3159 3285 4.759693 ACATACGGAGCAAAATGAGTGAAA 59.240 37.500 0.00 0.00 0.00 2.69
3160 3286 5.240623 ACATACGGAGCAAAATGAGTGAAAA 59.759 36.000 0.00 0.00 0.00 2.29
3161 3287 4.853924 ACGGAGCAAAATGAGTGAAAAT 57.146 36.364 0.00 0.00 0.00 1.82
3162 3288 5.957842 ACGGAGCAAAATGAGTGAAAATA 57.042 34.783 0.00 0.00 0.00 1.40
3163 3289 6.515272 ACGGAGCAAAATGAGTGAAAATAT 57.485 33.333 0.00 0.00 0.00 1.28
3164 3290 6.324819 ACGGAGCAAAATGAGTGAAAATATG 58.675 36.000 0.00 0.00 0.00 1.78
3165 3291 6.071952 ACGGAGCAAAATGAGTGAAAATATGT 60.072 34.615 0.00 0.00 0.00 2.29
3166 3292 6.470235 CGGAGCAAAATGAGTGAAAATATGTC 59.530 38.462 0.00 0.00 0.00 3.06
3167 3293 7.542025 GGAGCAAAATGAGTGAAAATATGTCT 58.458 34.615 0.00 0.00 0.00 3.41
3168 3294 8.677300 GGAGCAAAATGAGTGAAAATATGTCTA 58.323 33.333 0.00 0.00 0.00 2.59
3184 3310 9.929180 AAATATGTCTATACATTCGTATGCAGT 57.071 29.630 1.46 0.00 44.07 4.40
3185 3311 9.574458 AATATGTCTATACATTCGTATGCAGTC 57.426 33.333 1.46 0.00 44.07 3.51
3186 3312 6.635030 TGTCTATACATTCGTATGCAGTCT 57.365 37.500 1.46 0.00 38.79 3.24
3187 3313 7.739498 TGTCTATACATTCGTATGCAGTCTA 57.261 36.000 1.46 0.00 38.79 2.59
3188 3314 8.336801 TGTCTATACATTCGTATGCAGTCTAT 57.663 34.615 1.46 0.00 38.79 1.98
3189 3315 9.444600 TGTCTATACATTCGTATGCAGTCTATA 57.555 33.333 1.46 0.00 38.79 1.31
3195 3321 8.887036 ACATTCGTATGCAGTCTATATTGAAA 57.113 30.769 1.46 0.00 35.03 2.69
3196 3322 9.494271 ACATTCGTATGCAGTCTATATTGAAAT 57.506 29.630 1.46 0.00 35.03 2.17
3197 3323 9.964253 CATTCGTATGCAGTCTATATTGAAATC 57.036 33.333 0.00 0.00 0.00 2.17
3198 3324 9.935241 ATTCGTATGCAGTCTATATTGAAATCT 57.065 29.630 0.00 0.00 0.00 2.40
3199 3325 8.972262 TCGTATGCAGTCTATATTGAAATCTC 57.028 34.615 0.00 0.00 0.00 2.75
3200 3326 8.797438 TCGTATGCAGTCTATATTGAAATCTCT 58.203 33.333 0.00 0.00 0.00 3.10
3228 3354 5.850046 AACTTATATCTGGGAATGGAGGG 57.150 43.478 0.00 0.00 0.00 4.30
3229 3355 5.106631 ACTTATATCTGGGAATGGAGGGA 57.893 43.478 0.00 0.00 0.00 4.20
3230 3356 5.097234 ACTTATATCTGGGAATGGAGGGAG 58.903 45.833 0.00 0.00 0.00 4.30
3253 3379 1.197721 CTTGGATGAAGTGTTGCCGAC 59.802 52.381 0.00 0.00 0.00 4.79
3270 3396 3.790789 GCCGACTGGTGTTTGTTTAACTG 60.791 47.826 0.00 0.00 37.67 3.16
3273 3399 5.392165 CCGACTGGTGTTTGTTTAACTGAAA 60.392 40.000 0.00 0.00 37.64 2.69
3278 3404 6.982852 TGGTGTTTGTTTAACTGAAACTCAA 58.017 32.000 10.78 1.31 46.53 3.02
3280 3406 7.088272 GGTGTTTGTTTAACTGAAACTCAACT 58.912 34.615 10.78 0.00 46.53 3.16
3282 3408 7.593644 GTGTTTGTTTAACTGAAACTCAACTGT 59.406 33.333 10.78 0.00 46.53 3.55
3312 3438 0.669077 ATAAGTACCCGCTGCTCTCG 59.331 55.000 0.00 0.00 0.00 4.04
3313 3439 2.001361 TAAGTACCCGCTGCTCTCGC 62.001 60.000 0.00 0.00 0.00 5.03
3314 3440 4.874977 GTACCCGCTGCTCTCGCC 62.875 72.222 0.00 0.00 34.43 5.54
3336 3462 2.434884 GCGCTGCAGCTCAGGTAA 60.435 61.111 34.22 0.00 43.06 2.85
3345 3473 3.244526 TGCAGCTCAGGTAATTCTCACAA 60.245 43.478 0.00 0.00 0.00 3.33
3346 3474 3.753272 GCAGCTCAGGTAATTCTCACAAA 59.247 43.478 0.00 0.00 0.00 2.83
3347 3475 4.397417 GCAGCTCAGGTAATTCTCACAAAT 59.603 41.667 0.00 0.00 0.00 2.32
3348 3476 5.105997 GCAGCTCAGGTAATTCTCACAAATT 60.106 40.000 0.00 0.00 33.54 1.82
3349 3477 6.549952 CAGCTCAGGTAATTCTCACAAATTC 58.450 40.000 0.00 0.00 31.50 2.17
3350 3478 6.373774 CAGCTCAGGTAATTCTCACAAATTCT 59.626 38.462 0.00 0.00 31.50 2.40
3351 3479 6.944862 AGCTCAGGTAATTCTCACAAATTCTT 59.055 34.615 0.00 0.00 31.50 2.52
3352 3480 7.449704 AGCTCAGGTAATTCTCACAAATTCTTT 59.550 33.333 0.00 0.00 31.50 2.52
3353 3481 7.752686 GCTCAGGTAATTCTCACAAATTCTTTC 59.247 37.037 0.00 0.00 31.50 2.62
3354 3482 8.924511 TCAGGTAATTCTCACAAATTCTTTCT 57.075 30.769 0.00 0.00 31.50 2.52
3364 3492 8.781196 TCTCACAAATTCTTTCTTTCAGATCTG 58.219 33.333 17.07 17.07 0.00 2.90
3379 3507 9.434420 CTTTCAGATCTGACTAGATTTTGAGTT 57.566 33.333 25.07 0.00 43.63 3.01
3385 3513 4.385825 TGACTAGATTTTGAGTTGCGGTT 58.614 39.130 0.00 0.00 0.00 4.44
3388 3516 5.003804 ACTAGATTTTGAGTTGCGGTTCAT 58.996 37.500 0.00 0.00 0.00 2.57
3393 3521 1.225855 TGAGTTGCGGTTCATGTGTC 58.774 50.000 0.00 0.00 0.00 3.67
3418 3546 6.128553 CGGCTCGCTAATGTTCACATTATTAT 60.129 38.462 11.87 0.00 44.84 1.28
3446 3574 2.832838 TCTGGATCTGGAACCTTAGCA 58.167 47.619 0.00 0.00 0.00 3.49
3466 3594 3.397482 CAGAGGAAACAAGTCTGGAGTG 58.603 50.000 0.00 0.00 35.11 3.51
3486 3614 3.735240 GTGAAATCATGTTTTCAGCGCAA 59.265 39.130 25.26 6.45 44.06 4.85
3524 3652 6.980716 ACAGCATGCAAATCCTGTAGGGAG 62.981 50.000 21.98 0.00 44.70 4.30
3556 3684 9.255304 CTAGATTCAAGCTAACAATCTTAGTCC 57.745 37.037 16.02 0.00 37.85 3.85
3557 3685 6.758886 AGATTCAAGCTAACAATCTTAGTCCG 59.241 38.462 8.31 0.00 33.88 4.79
3559 3687 6.519679 TCAAGCTAACAATCTTAGTCCGTA 57.480 37.500 0.00 0.00 0.00 4.02
3560 3688 6.561614 TCAAGCTAACAATCTTAGTCCGTAG 58.438 40.000 0.00 0.00 0.00 3.51
3561 3689 6.376299 TCAAGCTAACAATCTTAGTCCGTAGA 59.624 38.462 0.00 0.00 0.00 2.59
3562 3690 6.963083 AGCTAACAATCTTAGTCCGTAGAT 57.037 37.500 0.00 0.00 32.62 1.98
3563 3691 7.349412 AGCTAACAATCTTAGTCCGTAGATT 57.651 36.000 0.00 0.00 40.73 2.40
3595 3756 3.800929 ACATAGATTGCGCATTCATCG 57.199 42.857 28.28 19.11 0.00 3.84
3635 3796 1.168714 GTCTGCCCCAAGACATTGTC 58.831 55.000 8.82 8.82 44.98 3.18
3636 3797 1.067295 TCTGCCCCAAGACATTGTCT 58.933 50.000 13.61 13.61 45.64 3.41
3637 3798 1.003580 TCTGCCCCAAGACATTGTCTC 59.996 52.381 19.23 7.53 42.59 3.36
3638 3799 0.770499 TGCCCCAAGACATTGTCTCA 59.230 50.000 19.23 9.97 42.59 3.27
3639 3800 1.168714 GCCCCAAGACATTGTCTCAC 58.831 55.000 19.23 4.62 42.59 3.51
3640 3801 1.442769 CCCCAAGACATTGTCTCACG 58.557 55.000 19.23 10.91 42.59 4.35
3648 3810 4.887748 AGACATTGTCTCACGATTTCAGT 58.112 39.130 13.61 0.00 38.71 3.41
3650 3812 4.631131 ACATTGTCTCACGATTTCAGTCA 58.369 39.130 0.00 0.00 0.00 3.41
3748 3912 3.386768 AGTCGCACTCACACTGTAATT 57.613 42.857 0.00 0.00 0.00 1.40
3772 3936 1.453155 AAGTTTCTGCCATGCTACCG 58.547 50.000 0.00 0.00 0.00 4.02
3786 3950 0.677288 CTACCGCATTGATACCCGGA 59.323 55.000 0.73 0.00 43.20 5.14
3790 3954 2.304761 ACCGCATTGATACCCGGATATT 59.695 45.455 0.73 0.00 43.20 1.28
3842 4006 9.788960 GACTAAAATCATCCATACCAAAACTTC 57.211 33.333 0.00 0.00 0.00 3.01
3847 4011 5.579047 TCATCCATACCAAAACTTCCATGT 58.421 37.500 0.00 0.00 0.00 3.21
3854 4018 3.573967 ACCAAAACTTCCATGTCATGACC 59.426 43.478 22.85 5.91 0.00 4.02
3861 4025 1.066215 TCCATGTCATGACCAGAACCG 60.066 52.381 22.85 3.96 0.00 4.44
3865 4029 0.320771 GTCATGACCAGAACCGCACT 60.321 55.000 15.31 0.00 0.00 4.40
3907 4071 6.038603 GCCATCAGCAGTGATACTTTTATGAA 59.961 38.462 0.00 0.00 41.85 2.57
3941 5916 2.526304 TAGTTCGCTTTGTGCTCACT 57.474 45.000 1.47 0.00 40.11 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.210724 GGCAACTATGTTACCACACCTA 57.789 45.455 0.00 0.00 35.03 3.08
1 2 3.067684 GGCAACTATGTTACCACACCT 57.932 47.619 0.00 0.00 35.03 4.00
16 17 9.556030 GTCTACAAAGTAATAAATGAAGGCAAC 57.444 33.333 0.00 0.00 0.00 4.17
17 18 9.515226 AGTCTACAAAGTAATAAATGAAGGCAA 57.485 29.630 0.00 0.00 0.00 4.52
18 19 9.162764 GAGTCTACAAAGTAATAAATGAAGGCA 57.837 33.333 0.00 0.00 0.00 4.75
19 20 9.162764 TGAGTCTACAAAGTAATAAATGAAGGC 57.837 33.333 0.00 0.00 0.00 4.35
30 31 8.892723 CCAATGCATAATGAGTCTACAAAGTAA 58.107 33.333 0.00 0.00 0.00 2.24
31 32 8.264347 TCCAATGCATAATGAGTCTACAAAGTA 58.736 33.333 0.00 0.00 0.00 2.24
32 33 7.112122 TCCAATGCATAATGAGTCTACAAAGT 58.888 34.615 0.00 0.00 0.00 2.66
33 34 7.558161 TCCAATGCATAATGAGTCTACAAAG 57.442 36.000 0.00 0.00 0.00 2.77
34 35 7.936496 TTCCAATGCATAATGAGTCTACAAA 57.064 32.000 0.00 0.00 0.00 2.83
35 36 7.148086 GGTTTCCAATGCATAATGAGTCTACAA 60.148 37.037 0.00 0.00 0.00 2.41
36 37 6.318648 GGTTTCCAATGCATAATGAGTCTACA 59.681 38.462 0.00 0.00 0.00 2.74
37 38 6.511767 CGGTTTCCAATGCATAATGAGTCTAC 60.512 42.308 0.00 0.00 0.00 2.59
38 39 5.527214 CGGTTTCCAATGCATAATGAGTCTA 59.473 40.000 0.00 0.00 0.00 2.59
39 40 4.336433 CGGTTTCCAATGCATAATGAGTCT 59.664 41.667 0.00 0.00 0.00 3.24
40 41 4.601019 CGGTTTCCAATGCATAATGAGTC 58.399 43.478 0.00 0.00 0.00 3.36
41 42 3.181487 GCGGTTTCCAATGCATAATGAGT 60.181 43.478 0.00 0.00 0.00 3.41
42 43 3.067180 AGCGGTTTCCAATGCATAATGAG 59.933 43.478 0.00 0.00 0.00 2.90
43 44 3.023119 AGCGGTTTCCAATGCATAATGA 58.977 40.909 0.00 0.00 0.00 2.57
44 45 3.441496 AGCGGTTTCCAATGCATAATG 57.559 42.857 0.00 0.00 0.00 1.90
45 46 4.584325 ACATAGCGGTTTCCAATGCATAAT 59.416 37.500 0.00 0.00 0.00 1.28
46 47 3.951037 ACATAGCGGTTTCCAATGCATAA 59.049 39.130 0.00 0.00 0.00 1.90
47 48 3.314913 CACATAGCGGTTTCCAATGCATA 59.685 43.478 0.00 0.00 0.00 3.14
48 49 2.099592 CACATAGCGGTTTCCAATGCAT 59.900 45.455 0.00 0.00 0.00 3.96
49 50 1.472082 CACATAGCGGTTTCCAATGCA 59.528 47.619 0.00 0.00 0.00 3.96
50 51 1.742831 TCACATAGCGGTTTCCAATGC 59.257 47.619 0.00 0.00 0.00 3.56
51 52 3.243168 CCATCACATAGCGGTTTCCAATG 60.243 47.826 0.00 0.00 0.00 2.82
52 53 2.951642 CCATCACATAGCGGTTTCCAAT 59.048 45.455 0.00 0.00 0.00 3.16
53 54 2.290641 ACCATCACATAGCGGTTTCCAA 60.291 45.455 0.00 0.00 0.00 3.53
54 55 1.280710 ACCATCACATAGCGGTTTCCA 59.719 47.619 0.00 0.00 0.00 3.53
55 56 2.038387 ACCATCACATAGCGGTTTCC 57.962 50.000 0.00 0.00 0.00 3.13
56 57 3.936453 TGTTACCATCACATAGCGGTTTC 59.064 43.478 0.00 0.00 32.81 2.78
57 58 3.945346 TGTTACCATCACATAGCGGTTT 58.055 40.909 0.00 0.00 32.81 3.27
58 59 3.620427 TGTTACCATCACATAGCGGTT 57.380 42.857 0.00 0.00 32.81 4.44
59 60 3.838244 ATGTTACCATCACATAGCGGT 57.162 42.857 0.00 0.00 32.88 5.68
60 61 7.549134 ACATAATATGTTACCATCACATAGCGG 59.451 37.037 0.00 0.00 41.63 5.52
61 62 8.479313 ACATAATATGTTACCATCACATAGCG 57.521 34.615 0.00 0.00 41.63 4.26
80 81 8.371699 GGAGAGAGGCAAATAGAGTAACATAAT 58.628 37.037 0.00 0.00 0.00 1.28
81 82 7.565398 AGGAGAGAGGCAAATAGAGTAACATAA 59.435 37.037 0.00 0.00 0.00 1.90
82 83 7.069986 AGGAGAGAGGCAAATAGAGTAACATA 58.930 38.462 0.00 0.00 0.00 2.29
83 84 5.902431 AGGAGAGAGGCAAATAGAGTAACAT 59.098 40.000 0.00 0.00 0.00 2.71
84 85 5.273208 AGGAGAGAGGCAAATAGAGTAACA 58.727 41.667 0.00 0.00 0.00 2.41
85 86 5.361285 TGAGGAGAGAGGCAAATAGAGTAAC 59.639 44.000 0.00 0.00 0.00 2.50
86 87 5.519808 TGAGGAGAGAGGCAAATAGAGTAA 58.480 41.667 0.00 0.00 0.00 2.24
87 88 5.130705 TGAGGAGAGAGGCAAATAGAGTA 57.869 43.478 0.00 0.00 0.00 2.59
88 89 3.987745 TGAGGAGAGAGGCAAATAGAGT 58.012 45.455 0.00 0.00 0.00 3.24
89 90 5.549742 AATGAGGAGAGAGGCAAATAGAG 57.450 43.478 0.00 0.00 0.00 2.43
90 91 6.613271 AGTTAATGAGGAGAGAGGCAAATAGA 59.387 38.462 0.00 0.00 0.00 1.98
91 92 6.825610 AGTTAATGAGGAGAGAGGCAAATAG 58.174 40.000 0.00 0.00 0.00 1.73
92 93 6.814954 AGTTAATGAGGAGAGAGGCAAATA 57.185 37.500 0.00 0.00 0.00 1.40
93 94 5.707066 AGTTAATGAGGAGAGAGGCAAAT 57.293 39.130 0.00 0.00 0.00 2.32
94 95 5.721960 AGTAGTTAATGAGGAGAGAGGCAAA 59.278 40.000 0.00 0.00 0.00 3.68
95 96 5.273208 AGTAGTTAATGAGGAGAGAGGCAA 58.727 41.667 0.00 0.00 0.00 4.52
96 97 4.873010 AGTAGTTAATGAGGAGAGAGGCA 58.127 43.478 0.00 0.00 0.00 4.75
97 98 5.596845 CAAGTAGTTAATGAGGAGAGAGGC 58.403 45.833 0.00 0.00 0.00 4.70
98 99 5.452636 GGCAAGTAGTTAATGAGGAGAGAGG 60.453 48.000 0.00 0.00 0.00 3.69
99 100 5.127845 TGGCAAGTAGTTAATGAGGAGAGAG 59.872 44.000 0.00 0.00 0.00 3.20
100 101 5.023452 TGGCAAGTAGTTAATGAGGAGAGA 58.977 41.667 0.00 0.00 0.00 3.10
101 102 5.112686 GTGGCAAGTAGTTAATGAGGAGAG 58.887 45.833 0.00 0.00 0.00 3.20
102 103 4.530553 TGTGGCAAGTAGTTAATGAGGAGA 59.469 41.667 0.00 0.00 0.00 3.71
103 104 4.832248 TGTGGCAAGTAGTTAATGAGGAG 58.168 43.478 0.00 0.00 0.00 3.69
104 105 4.901197 TGTGGCAAGTAGTTAATGAGGA 57.099 40.909 0.00 0.00 0.00 3.71
105 106 5.185454 TGATGTGGCAAGTAGTTAATGAGG 58.815 41.667 0.00 0.00 0.00 3.86
106 107 6.539826 TGATGATGTGGCAAGTAGTTAATGAG 59.460 38.462 0.00 0.00 0.00 2.90
107 108 6.413892 TGATGATGTGGCAAGTAGTTAATGA 58.586 36.000 0.00 0.00 0.00 2.57
108 109 6.682423 TGATGATGTGGCAAGTAGTTAATG 57.318 37.500 0.00 0.00 0.00 1.90
109 110 7.886629 ATTGATGATGTGGCAAGTAGTTAAT 57.113 32.000 0.00 0.00 0.00 1.40
110 111 7.701539 AATTGATGATGTGGCAAGTAGTTAA 57.298 32.000 0.00 0.00 0.00 2.01
111 112 7.701539 AAATTGATGATGTGGCAAGTAGTTA 57.298 32.000 0.00 0.00 0.00 2.24
112 113 6.594788 AAATTGATGATGTGGCAAGTAGTT 57.405 33.333 0.00 0.00 0.00 2.24
113 114 6.392354 CAAAATTGATGATGTGGCAAGTAGT 58.608 36.000 0.00 0.00 0.00 2.73
114 115 5.290158 GCAAAATTGATGATGTGGCAAGTAG 59.710 40.000 0.00 0.00 0.00 2.57
115 116 5.047164 AGCAAAATTGATGATGTGGCAAGTA 60.047 36.000 0.00 0.00 0.00 2.24
116 117 3.998341 GCAAAATTGATGATGTGGCAAGT 59.002 39.130 0.00 0.00 0.00 3.16
117 118 4.250464 AGCAAAATTGATGATGTGGCAAG 58.750 39.130 0.00 0.00 0.00 4.01
118 119 4.274602 AGCAAAATTGATGATGTGGCAA 57.725 36.364 0.00 0.00 0.00 4.52
119 120 3.965379 AGCAAAATTGATGATGTGGCA 57.035 38.095 0.00 0.00 0.00 4.92
120 121 5.813672 ACATAAGCAAAATTGATGATGTGGC 59.186 36.000 12.42 0.00 44.65 5.01
123 124 5.813672 GCCACATAAGCAAAATTGATGATGT 59.186 36.000 8.28 8.28 46.67 3.06
124 125 5.813157 TGCCACATAAGCAAAATTGATGATG 59.187 36.000 7.11 7.11 40.47 3.07
125 126 5.979993 TGCCACATAAGCAAAATTGATGAT 58.020 33.333 0.00 0.00 37.28 2.45
126 127 5.402997 TGCCACATAAGCAAAATTGATGA 57.597 34.783 0.00 0.00 37.28 2.92
127 128 6.046593 AGATGCCACATAAGCAAAATTGATG 58.953 36.000 0.00 0.00 44.83 3.07
128 129 6.229936 AGATGCCACATAAGCAAAATTGAT 57.770 33.333 0.00 0.00 44.83 2.57
129 130 5.664294 AGATGCCACATAAGCAAAATTGA 57.336 34.783 0.00 0.00 44.83 2.57
130 131 6.982141 ACATAGATGCCACATAAGCAAAATTG 59.018 34.615 0.00 0.00 44.83 2.32
131 132 7.116075 ACATAGATGCCACATAAGCAAAATT 57.884 32.000 0.00 0.00 44.83 1.82
132 133 6.720112 ACATAGATGCCACATAAGCAAAAT 57.280 33.333 0.00 0.00 44.83 1.82
133 134 6.528537 AACATAGATGCCACATAAGCAAAA 57.471 33.333 0.00 0.00 44.83 2.44
134 135 6.828273 AGTAACATAGATGCCACATAAGCAAA 59.172 34.615 0.00 0.00 44.83 3.68
135 136 6.356556 AGTAACATAGATGCCACATAAGCAA 58.643 36.000 0.00 0.00 44.83 3.91
136 137 5.928976 AGTAACATAGATGCCACATAAGCA 58.071 37.500 0.00 0.00 45.94 3.91
137 138 6.369065 GGTAGTAACATAGATGCCACATAAGC 59.631 42.308 0.00 0.00 0.00 3.09
138 139 7.671302 AGGTAGTAACATAGATGCCACATAAG 58.329 38.462 0.00 0.00 0.00 1.73
139 140 7.612065 AGGTAGTAACATAGATGCCACATAA 57.388 36.000 0.00 0.00 0.00 1.90
140 141 8.749354 CATAGGTAGTAACATAGATGCCACATA 58.251 37.037 0.00 0.00 0.00 2.29
141 142 7.235606 ACATAGGTAGTAACATAGATGCCACAT 59.764 37.037 0.00 0.00 0.00 3.21
142 143 6.553476 ACATAGGTAGTAACATAGATGCCACA 59.447 38.462 0.00 0.00 0.00 4.17
143 144 6.994221 ACATAGGTAGTAACATAGATGCCAC 58.006 40.000 0.00 0.00 0.00 5.01
144 145 7.612065 AACATAGGTAGTAACATAGATGCCA 57.388 36.000 0.00 0.00 0.00 4.92
145 146 8.804204 AGTAACATAGGTAGTAACATAGATGCC 58.196 37.037 0.00 0.00 0.00 4.40
146 147 9.843334 GAGTAACATAGGTAGTAACATAGATGC 57.157 37.037 0.00 0.00 0.00 3.91
148 149 9.531158 GGGAGTAACATAGGTAGTAACATAGAT 57.469 37.037 0.00 0.00 0.00 1.98
149 150 8.505246 TGGGAGTAACATAGGTAGTAACATAGA 58.495 37.037 0.00 0.00 0.00 1.98
150 151 8.574737 GTGGGAGTAACATAGGTAGTAACATAG 58.425 40.741 0.00 0.00 0.00 2.23
151 152 8.284435 AGTGGGAGTAACATAGGTAGTAACATA 58.716 37.037 0.00 0.00 0.00 2.29
152 153 7.130775 AGTGGGAGTAACATAGGTAGTAACAT 58.869 38.462 0.00 0.00 0.00 2.71
153 154 6.496743 AGTGGGAGTAACATAGGTAGTAACA 58.503 40.000 0.00 0.00 0.00 2.41
154 155 8.574737 CATAGTGGGAGTAACATAGGTAGTAAC 58.425 40.741 0.00 0.00 0.00 2.50
155 156 8.505246 TCATAGTGGGAGTAACATAGGTAGTAA 58.495 37.037 0.00 0.00 0.00 2.24
156 157 7.941238 GTCATAGTGGGAGTAACATAGGTAGTA 59.059 40.741 0.00 0.00 0.00 1.82
157 158 6.776603 GTCATAGTGGGAGTAACATAGGTAGT 59.223 42.308 0.00 0.00 0.00 2.73
158 159 6.208994 GGTCATAGTGGGAGTAACATAGGTAG 59.791 46.154 0.00 0.00 0.00 3.18
159 160 6.073314 GGTCATAGTGGGAGTAACATAGGTA 58.927 44.000 0.00 0.00 0.00 3.08
160 161 4.900054 GGTCATAGTGGGAGTAACATAGGT 59.100 45.833 0.00 0.00 0.00 3.08
161 162 4.899457 TGGTCATAGTGGGAGTAACATAGG 59.101 45.833 0.00 0.00 0.00 2.57
162 163 6.281405 GTTGGTCATAGTGGGAGTAACATAG 58.719 44.000 0.00 0.00 0.00 2.23
163 164 5.129815 GGTTGGTCATAGTGGGAGTAACATA 59.870 44.000 0.00 0.00 0.00 2.29
164 165 4.080526 GGTTGGTCATAGTGGGAGTAACAT 60.081 45.833 0.00 0.00 0.00 2.71
165 166 3.262405 GGTTGGTCATAGTGGGAGTAACA 59.738 47.826 0.00 0.00 0.00 2.41
166 167 3.518303 AGGTTGGTCATAGTGGGAGTAAC 59.482 47.826 0.00 0.00 0.00 2.50
167 168 3.798515 AGGTTGGTCATAGTGGGAGTAA 58.201 45.455 0.00 0.00 0.00 2.24
168 169 3.484953 AGGTTGGTCATAGTGGGAGTA 57.515 47.619 0.00 0.00 0.00 2.59
169 170 2.344093 AGGTTGGTCATAGTGGGAGT 57.656 50.000 0.00 0.00 0.00 3.85
170 171 3.775316 AGTTAGGTTGGTCATAGTGGGAG 59.225 47.826 0.00 0.00 0.00 4.30
171 172 3.773119 GAGTTAGGTTGGTCATAGTGGGA 59.227 47.826 0.00 0.00 0.00 4.37
172 173 3.517901 TGAGTTAGGTTGGTCATAGTGGG 59.482 47.826 0.00 0.00 0.00 4.61
173 174 4.223032 AGTGAGTTAGGTTGGTCATAGTGG 59.777 45.833 0.00 0.00 0.00 4.00
174 175 5.047306 TCAGTGAGTTAGGTTGGTCATAGTG 60.047 44.000 0.00 0.00 0.00 2.74
175 176 5.084519 TCAGTGAGTTAGGTTGGTCATAGT 58.915 41.667 0.00 0.00 0.00 2.12
176 177 5.661056 TCAGTGAGTTAGGTTGGTCATAG 57.339 43.478 0.00 0.00 0.00 2.23
177 178 6.620877 ATTCAGTGAGTTAGGTTGGTCATA 57.379 37.500 0.00 0.00 0.00 2.15
178 179 4.974645 TTCAGTGAGTTAGGTTGGTCAT 57.025 40.909 0.00 0.00 0.00 3.06
179 180 4.974645 ATTCAGTGAGTTAGGTTGGTCA 57.025 40.909 0.00 0.00 0.00 4.02
180 181 6.316390 CCAATATTCAGTGAGTTAGGTTGGTC 59.684 42.308 0.00 0.00 0.00 4.02
181 182 6.180472 CCAATATTCAGTGAGTTAGGTTGGT 58.820 40.000 0.00 0.00 0.00 3.67
182 183 6.180472 ACCAATATTCAGTGAGTTAGGTTGG 58.820 40.000 14.51 14.51 38.58 3.77
183 184 7.106239 AGACCAATATTCAGTGAGTTAGGTTG 58.894 38.462 0.00 0.00 0.00 3.77
184 185 7.259088 AGACCAATATTCAGTGAGTTAGGTT 57.741 36.000 0.00 0.00 0.00 3.50
185 186 6.875972 AGACCAATATTCAGTGAGTTAGGT 57.124 37.500 0.00 0.01 0.00 3.08
186 187 8.478877 AGTTAGACCAATATTCAGTGAGTTAGG 58.521 37.037 0.00 0.00 0.00 2.69
187 188 9.307121 CAGTTAGACCAATATTCAGTGAGTTAG 57.693 37.037 0.00 0.00 0.00 2.34
232 233 4.898861 AGTTTAAAGCTTCCCCATTTGTCA 59.101 37.500 0.00 0.00 0.00 3.58
265 266 4.421033 TCGTACGAAGATATGATGCCTC 57.579 45.455 17.11 0.00 0.00 4.70
277 278 8.679288 TTATCCTTCTTACTTTTCGTACGAAG 57.321 34.615 27.72 20.72 46.23 3.79
290 291 5.985911 TGGGCAGTAACTTATCCTTCTTAC 58.014 41.667 0.00 0.00 0.00 2.34
324 325 4.261994 GCAAACTTCACTGCCTATTGGAAA 60.262 41.667 0.00 0.00 34.57 3.13
333 334 2.079925 CTCCTAGCAAACTTCACTGCC 58.920 52.381 0.00 0.00 39.47 4.85
378 380 0.884704 TGTCTGAAGAAACTGCCGGC 60.885 55.000 22.73 22.73 0.00 6.13
380 382 1.135859 GCATGTCTGAAGAAACTGCCG 60.136 52.381 0.00 0.00 0.00 5.69
382 384 3.189910 TCATGCATGTCTGAAGAAACTGC 59.810 43.478 25.43 4.07 0.00 4.40
385 387 8.922058 AAAATATCATGCATGTCTGAAGAAAC 57.078 30.769 25.43 0.00 0.00 2.78
393 395 8.515695 TTCTGAAGAAAATATCATGCATGTCT 57.484 30.769 25.43 16.60 0.00 3.41
396 398 9.343103 GCTATTCTGAAGAAAATATCATGCATG 57.657 33.333 21.07 21.07 37.61 4.06
409 411 7.164122 AGAAACTGTCATGCTATTCTGAAGAA 58.836 34.615 0.00 0.00 38.56 2.52
472 475 2.357954 TTAGTTACGACGCGAGATCG 57.642 50.000 15.93 15.36 45.17 3.69
509 512 0.249996 GGAGGGGACGACAAACGAAA 60.250 55.000 0.00 0.00 45.77 3.46
517 520 1.305046 TTCTCTGGGAGGGGACGAC 60.305 63.158 0.00 0.00 0.00 4.34
518 521 1.305046 GTTCTCTGGGAGGGGACGA 60.305 63.158 0.00 0.00 0.00 4.20
519 522 2.711922 CGTTCTCTGGGAGGGGACG 61.712 68.421 0.00 0.00 0.00 4.79
520 523 1.192803 AACGTTCTCTGGGAGGGGAC 61.193 60.000 0.00 0.00 0.00 4.46
521 524 0.410663 TAACGTTCTCTGGGAGGGGA 59.589 55.000 2.82 0.00 0.00 4.81
539 544 3.709653 AGACCGGAATTGTTATCTGGCTA 59.290 43.478 9.46 0.00 45.59 3.93
588 593 7.463469 AGCGTATTTTCAAGTTTTGGAAAAG 57.537 32.000 0.00 0.00 43.73 2.27
593 598 6.292114 GGTGAAAGCGTATTTTCAAGTTTTGG 60.292 38.462 11.56 0.00 45.62 3.28
607 612 2.188062 AAAATCCGGGTGAAAGCGTA 57.812 45.000 0.00 0.00 33.03 4.42
657 667 6.503524 TGGTGTGAGAAAATGCTAAAAGAAC 58.496 36.000 0.00 0.00 0.00 3.01
665 675 2.362077 GTGGTTGGTGTGAGAAAATGCT 59.638 45.455 0.00 0.00 0.00 3.79
666 676 2.545742 GGTGGTTGGTGTGAGAAAATGC 60.546 50.000 0.00 0.00 0.00 3.56
667 677 2.958355 AGGTGGTTGGTGTGAGAAAATG 59.042 45.455 0.00 0.00 0.00 2.32
713 723 2.203669 TTTCCGAGTCCGACCCCA 60.204 61.111 0.00 0.00 38.22 4.96
714 724 1.328430 ATCTTTCCGAGTCCGACCCC 61.328 60.000 0.00 0.00 38.22 4.95
715 725 0.102663 GATCTTTCCGAGTCCGACCC 59.897 60.000 0.00 0.00 38.22 4.46
716 726 0.248539 CGATCTTTCCGAGTCCGACC 60.249 60.000 0.00 0.00 38.22 4.79
717 727 0.731417 TCGATCTTTCCGAGTCCGAC 59.269 55.000 0.00 0.00 38.22 4.79
718 728 1.015109 CTCGATCTTTCCGAGTCCGA 58.985 55.000 0.00 0.00 45.89 4.55
743 770 1.616628 ACGGAATTGCCCCTCCTCT 60.617 57.895 0.00 0.00 0.00 3.69
860 901 3.565516 GGAGATTTGAAGGCGTTTGAAC 58.434 45.455 0.00 0.00 0.00 3.18
899 940 1.683917 ACGAGGGGAATCGAGAATGAG 59.316 52.381 2.78 0.00 45.56 2.90
1187 1240 3.658422 AAAGGGAAGCCGGGGTCC 61.658 66.667 2.18 2.64 0.00 4.46
1188 1241 2.361230 CAAAGGGAAGCCGGGGTC 60.361 66.667 2.18 0.00 0.00 4.46
1189 1242 4.678743 GCAAAGGGAAGCCGGGGT 62.679 66.667 2.18 0.00 0.00 4.95
1212 1265 4.919754 GTCAAATCAATTCAGGACAAGTGC 59.080 41.667 0.00 0.00 0.00 4.40
1224 1278 6.830838 GGAATCTACCCAGAGTCAAATCAATT 59.169 38.462 4.71 0.00 45.63 2.32
1313 1367 0.446616 GCGGAAATCTCGAAACCCAC 59.553 55.000 0.00 0.00 0.00 4.61
1335 1389 0.039165 GCACCCTAAAGCACACAAGC 60.039 55.000 0.00 0.00 0.00 4.01
1342 1396 2.083774 CGATTCAAGCACCCTAAAGCA 58.916 47.619 0.00 0.00 0.00 3.91
1391 1445 1.659098 GTTGTGCTAGTACATCGTGGC 59.341 52.381 14.75 0.00 0.00 5.01
1392 1446 3.179830 GAGTTGTGCTAGTACATCGTGG 58.820 50.000 14.75 0.00 0.00 4.94
1393 1447 3.833442 TGAGTTGTGCTAGTACATCGTG 58.167 45.455 14.75 0.00 0.00 4.35
1394 1448 4.157840 TCATGAGTTGTGCTAGTACATCGT 59.842 41.667 14.75 8.74 0.00 3.73
1395 1449 4.672409 TCATGAGTTGTGCTAGTACATCG 58.328 43.478 14.75 2.07 0.00 3.84
1396 1450 6.074623 CGATTCATGAGTTGTGCTAGTACATC 60.075 42.308 14.75 13.54 0.00 3.06
1397 1451 5.750547 CGATTCATGAGTTGTGCTAGTACAT 59.249 40.000 14.75 0.19 0.00 2.29
1398 1452 5.102313 CGATTCATGAGTTGTGCTAGTACA 58.898 41.667 9.84 9.84 0.00 2.90
1399 1453 5.103000 ACGATTCATGAGTTGTGCTAGTAC 58.897 41.667 10.15 3.70 0.00 2.73
1400 1454 5.324784 ACGATTCATGAGTTGTGCTAGTA 57.675 39.130 10.15 0.00 0.00 1.82
1410 1464 4.553330 AAACAGGGTACGATTCATGAGT 57.447 40.909 0.00 0.00 0.00 3.41
1443 1497 2.819608 GCAGGTCAGCCAAATTTAGACA 59.180 45.455 11.73 0.00 37.19 3.41
1543 1597 2.965147 AGCAACAACCAAGCAAGGTATT 59.035 40.909 0.09 0.00 42.25 1.89
1613 1668 2.143925 GGCTAGTACATCGGAAATGCC 58.856 52.381 0.00 0.00 0.00 4.40
1632 1694 3.533547 CCCATGGTTTATGCATTGTTGG 58.466 45.455 11.73 4.30 35.37 3.77
1642 1704 1.846007 TTCGCAAGCCCATGGTTTAT 58.154 45.000 11.73 0.00 37.18 1.40
1653 1715 3.487942 ACACGGTTAAAAATTTCGCAAGC 59.512 39.130 0.00 0.00 37.18 4.01
1702 1764 3.599730 TGTATCAGTCAGGCTTCACAG 57.400 47.619 0.00 0.00 0.00 3.66
1730 1792 6.725834 AGTCCATTCAATATCAAAACCCAGTT 59.274 34.615 0.00 0.00 0.00 3.16
1785 1847 8.402472 TGACTACTCAACGAAATTTCACATTTT 58.598 29.630 17.99 0.99 0.00 1.82
1835 1923 5.061311 GCACATTTGTTTCTCATGCACATAC 59.939 40.000 0.00 0.00 31.17 2.39
1851 1939 2.731968 GCATCGTAACAGGGCACATTTG 60.732 50.000 0.00 0.00 0.00 2.32
1874 1962 5.056480 TCCAGAGAATACACAACAACAGTG 58.944 41.667 0.00 0.00 42.56 3.66
1883 1971 9.213777 AGGAGTATTTATTCCAGAGAATACACA 57.786 33.333 7.55 0.00 43.18 3.72
1885 1973 9.434275 TCAGGAGTATTTATTCCAGAGAATACA 57.566 33.333 7.55 0.00 43.18 2.29
1886 1974 9.699703 GTCAGGAGTATTTATTCCAGAGAATAC 57.300 37.037 2.45 0.00 43.18 1.89
1887 1975 9.434275 TGTCAGGAGTATTTATTCCAGAGAATA 57.566 33.333 2.45 0.00 42.77 1.75
1888 1976 8.324191 TGTCAGGAGTATTTATTCCAGAGAAT 57.676 34.615 2.45 0.00 44.95 2.40
1902 2024 8.938883 AGGTACAATAAATGATGTCAGGAGTAT 58.061 33.333 0.00 0.00 0.00 2.12
2015 2137 1.022735 GCTCGGTATCCAACTCGAGA 58.977 55.000 21.68 0.00 44.70 4.04
2037 2159 0.743688 CGTAGCATGAGAGCTCCAGT 59.256 55.000 10.93 0.00 45.26 4.00
2108 2230 5.763204 TGGATTTATCTCAATTAGCCGGTTC 59.237 40.000 1.90 0.00 0.00 3.62
2208 2330 7.065204 AGCTTATGCAAGAAACTAGACTTTAGC 59.935 37.037 0.00 1.43 42.74 3.09
2209 2331 8.485976 AGCTTATGCAAGAAACTAGACTTTAG 57.514 34.615 0.00 0.00 42.74 1.85
2210 2332 8.848474 AAGCTTATGCAAGAAACTAGACTTTA 57.152 30.769 0.00 0.00 42.74 1.85
2211 2333 7.751768 AAGCTTATGCAAGAAACTAGACTTT 57.248 32.000 0.00 0.00 42.74 2.66
2212 2334 7.751768 AAAGCTTATGCAAGAAACTAGACTT 57.248 32.000 0.00 0.00 42.74 3.01
2213 2335 8.097662 AGTAAAGCTTATGCAAGAAACTAGACT 58.902 33.333 0.00 0.00 42.74 3.24
2214 2336 8.257830 AGTAAAGCTTATGCAAGAAACTAGAC 57.742 34.615 0.00 0.00 42.74 2.59
2215 2337 8.848474 AAGTAAAGCTTATGCAAGAAACTAGA 57.152 30.769 0.00 0.00 42.74 2.43
2216 2338 7.900352 CGAAGTAAAGCTTATGCAAGAAACTAG 59.100 37.037 0.00 0.00 42.74 2.57
2217 2339 7.601130 TCGAAGTAAAGCTTATGCAAGAAACTA 59.399 33.333 0.00 0.00 42.74 2.24
2242 2364 1.333881 GCATCTGATCGCACTGCATTC 60.334 52.381 1.11 0.00 31.29 2.67
2284 2408 8.726870 AATCTTGCATTCAAATTATTCAAGGG 57.273 30.769 0.00 0.00 32.66 3.95
2317 2442 6.892658 ACATAACAACAAAGCCATGTTCTA 57.107 33.333 1.95 0.00 41.44 2.10
2417 2542 1.337703 TGTTTGAGCATCCAACAGCAC 59.662 47.619 0.00 0.00 44.57 4.40
2422 2547 5.098211 GCTAGAATTGTTTGAGCATCCAAC 58.902 41.667 0.00 0.00 40.81 3.77
2444 2569 5.758784 AGACTTGGTCAGTAAACTAAACAGC 59.241 40.000 0.52 0.00 35.01 4.40
2447 2572 8.883954 AGTTAGACTTGGTCAGTAAACTAAAC 57.116 34.615 0.52 0.00 38.88 2.01
2450 2575 6.210185 GGGAGTTAGACTTGGTCAGTAAACTA 59.790 42.308 0.52 0.00 39.94 2.24
2455 2580 4.399483 AGGGAGTTAGACTTGGTCAGTA 57.601 45.455 0.52 0.00 35.01 2.74
2488 2613 6.483640 AGCTAGTGACTTCGAAGTTCAAAATT 59.516 34.615 30.22 12.84 39.88 1.82
2492 2617 4.547532 GAGCTAGTGACTTCGAAGTTCAA 58.452 43.478 30.22 16.95 39.88 2.69
2500 2625 2.541999 GGAATCGGAGCTAGTGACTTCG 60.542 54.545 0.00 0.00 37.49 3.79
2513 2638 3.020274 CTCTTCAGACTCTGGAATCGGA 58.980 50.000 6.20 0.00 31.51 4.55
2571 2696 8.463930 TCATTCTTTGTATTCTCTTTTGGTGT 57.536 30.769 0.00 0.00 0.00 4.16
2582 2707 6.952935 ACGACAGTCTCATTCTTTGTATTC 57.047 37.500 0.00 0.00 0.00 1.75
2716 2841 3.067883 GCCCTTTGGTTTTTGTACGGTTA 59.932 43.478 0.00 0.00 0.00 2.85
2717 2842 2.159071 GCCCTTTGGTTTTTGTACGGTT 60.159 45.455 0.00 0.00 0.00 4.44
2721 2846 3.762407 ATGGCCCTTTGGTTTTTGTAC 57.238 42.857 0.00 0.00 0.00 2.90
2760 2885 4.081322 TCGGAGCTTCTGTTAAAGGTTT 57.919 40.909 0.00 0.00 37.12 3.27
2771 2896 1.694696 ACTTGAACCTTCGGAGCTTCT 59.305 47.619 0.56 0.00 0.00 2.85
2780 2905 2.104963 ACTGGGAGACACTTGAACCTTC 59.895 50.000 0.00 0.00 0.00 3.46
2828 2953 1.272212 CCCTTCGGTTTTTGGATGGTG 59.728 52.381 0.00 0.00 0.00 4.17
2855 2980 2.287915 CCATTTCGAGTAATCAAGCCCG 59.712 50.000 0.00 0.00 0.00 6.13
3017 3143 2.236146 TGTCAAACGGCTATCCACAGAT 59.764 45.455 0.00 0.00 36.44 2.90
3054 3180 1.892209 AACCGAACAGATTGGACCAC 58.108 50.000 0.00 0.00 0.00 4.16
3061 3187 7.687941 ATTTCAAGATGTAACCGAACAGATT 57.312 32.000 0.00 0.00 31.70 2.40
3083 3209 8.731591 TTATATTTAGGAACCGAGGGAGTATT 57.268 34.615 0.00 0.00 0.00 1.89
3085 3211 7.300658 ACTTATATTTAGGAACCGAGGGAGTA 58.699 38.462 0.00 0.00 0.00 2.59
3086 3212 6.141790 ACTTATATTTAGGAACCGAGGGAGT 58.858 40.000 0.00 0.00 0.00 3.85
3087 3213 6.494146 AGACTTATATTTAGGAACCGAGGGAG 59.506 42.308 0.00 0.00 0.00 4.30
3088 3214 6.267014 CAGACTTATATTTAGGAACCGAGGGA 59.733 42.308 0.00 0.00 0.00 4.20
3089 3215 6.041751 ACAGACTTATATTTAGGAACCGAGGG 59.958 42.308 0.00 0.00 0.00 4.30
3090 3216 7.052142 ACAGACTTATATTTAGGAACCGAGG 57.948 40.000 0.00 0.00 0.00 4.63
3091 3217 8.943909 AAACAGACTTATATTTAGGAACCGAG 57.056 34.615 0.00 0.00 0.00 4.63
3106 3232 9.238368 CCATATTGGAACCTTTAAACAGACTTA 57.762 33.333 0.00 0.00 40.96 2.24
3107 3233 7.947890 TCCATATTGGAACCTTTAAACAGACTT 59.052 33.333 0.00 0.00 45.00 3.01
3108 3234 7.466804 TCCATATTGGAACCTTTAAACAGACT 58.533 34.615 0.00 0.00 45.00 3.24
3109 3235 7.696992 TCCATATTGGAACCTTTAAACAGAC 57.303 36.000 0.00 0.00 45.00 3.51
3123 3249 3.310193 TCCGTATGTGGTCCATATTGGA 58.690 45.455 14.56 14.56 45.98 3.53
3124 3250 3.664107 CTCCGTATGTGGTCCATATTGG 58.336 50.000 6.41 9.38 38.29 3.16
3125 3251 3.067106 GCTCCGTATGTGGTCCATATTG 58.933 50.000 6.41 0.51 38.29 1.90
3126 3252 2.703536 TGCTCCGTATGTGGTCCATATT 59.296 45.455 6.41 0.00 38.29 1.28
3127 3253 2.325484 TGCTCCGTATGTGGTCCATAT 58.675 47.619 6.35 6.35 38.29 1.78
3128 3254 1.783071 TGCTCCGTATGTGGTCCATA 58.217 50.000 0.00 0.00 34.86 2.74
3129 3255 0.908910 TTGCTCCGTATGTGGTCCAT 59.091 50.000 0.00 0.00 37.58 3.41
3130 3256 0.687920 TTTGCTCCGTATGTGGTCCA 59.312 50.000 0.00 0.00 0.00 4.02
3131 3257 1.816074 TTTTGCTCCGTATGTGGTCC 58.184 50.000 0.00 0.00 0.00 4.46
3132 3258 3.006940 TCATTTTGCTCCGTATGTGGTC 58.993 45.455 0.00 0.00 0.00 4.02
3133 3259 3.009723 CTCATTTTGCTCCGTATGTGGT 58.990 45.455 0.00 0.00 0.00 4.16
3134 3260 3.009723 ACTCATTTTGCTCCGTATGTGG 58.990 45.455 0.00 0.00 0.00 4.17
3135 3261 3.684305 TCACTCATTTTGCTCCGTATGTG 59.316 43.478 0.00 0.00 0.00 3.21
3136 3262 3.937814 TCACTCATTTTGCTCCGTATGT 58.062 40.909 0.00 0.00 0.00 2.29
3137 3263 4.944962 TTCACTCATTTTGCTCCGTATG 57.055 40.909 0.00 0.00 0.00 2.39
3138 3264 5.957842 TTTTCACTCATTTTGCTCCGTAT 57.042 34.783 0.00 0.00 0.00 3.06
3139 3265 5.957842 ATTTTCACTCATTTTGCTCCGTA 57.042 34.783 0.00 0.00 0.00 4.02
3140 3266 4.853924 ATTTTCACTCATTTTGCTCCGT 57.146 36.364 0.00 0.00 0.00 4.69
3141 3267 6.324819 ACATATTTTCACTCATTTTGCTCCG 58.675 36.000 0.00 0.00 0.00 4.63
3142 3268 7.542025 AGACATATTTTCACTCATTTTGCTCC 58.458 34.615 0.00 0.00 0.00 4.70
3158 3284 9.929180 ACTGCATACGAATGTATAGACATATTT 57.071 29.630 2.88 0.00 45.93 1.40
3159 3285 9.574458 GACTGCATACGAATGTATAGACATATT 57.426 33.333 2.88 0.00 45.93 1.28
3160 3286 8.961634 AGACTGCATACGAATGTATAGACATAT 58.038 33.333 2.88 0.00 45.93 1.78
3161 3287 8.336801 AGACTGCATACGAATGTATAGACATA 57.663 34.615 2.88 0.00 45.93 2.29
3163 3289 6.635030 AGACTGCATACGAATGTATAGACA 57.365 37.500 0.00 0.00 39.28 3.41
3169 3295 9.974980 TTTCAATATAGACTGCATACGAATGTA 57.025 29.630 0.00 0.00 35.38 2.29
3170 3296 8.887036 TTTCAATATAGACTGCATACGAATGT 57.113 30.769 0.00 0.00 35.38 2.71
3171 3297 9.964253 GATTTCAATATAGACTGCATACGAATG 57.036 33.333 0.00 0.00 36.09 2.67
3172 3298 9.935241 AGATTTCAATATAGACTGCATACGAAT 57.065 29.630 0.00 0.00 0.00 3.34
3173 3299 9.411801 GAGATTTCAATATAGACTGCATACGAA 57.588 33.333 0.00 0.00 0.00 3.85
3174 3300 8.797438 AGAGATTTCAATATAGACTGCATACGA 58.203 33.333 0.00 0.00 0.00 3.43
3175 3301 8.978564 AGAGATTTCAATATAGACTGCATACG 57.021 34.615 0.00 0.00 0.00 3.06
3203 3329 7.069344 CCCTCCATTCCCAGATATAAGTTTTT 58.931 38.462 0.00 0.00 0.00 1.94
3204 3330 6.392842 TCCCTCCATTCCCAGATATAAGTTTT 59.607 38.462 0.00 0.00 0.00 2.43
3205 3331 5.917087 TCCCTCCATTCCCAGATATAAGTTT 59.083 40.000 0.00 0.00 0.00 2.66
3206 3332 5.486332 TCCCTCCATTCCCAGATATAAGTT 58.514 41.667 0.00 0.00 0.00 2.66
3207 3333 5.097234 CTCCCTCCATTCCCAGATATAAGT 58.903 45.833 0.00 0.00 0.00 2.24
3208 3334 5.097234 ACTCCCTCCATTCCCAGATATAAG 58.903 45.833 0.00 0.00 0.00 1.73
3209 3335 5.106631 ACTCCCTCCATTCCCAGATATAA 57.893 43.478 0.00 0.00 0.00 0.98
3210 3336 4.785173 ACTCCCTCCATTCCCAGATATA 57.215 45.455 0.00 0.00 0.00 0.86
3211 3337 3.663298 ACTCCCTCCATTCCCAGATAT 57.337 47.619 0.00 0.00 0.00 1.63
3212 3338 3.471306 AGTACTCCCTCCATTCCCAGATA 59.529 47.826 0.00 0.00 0.00 1.98
3213 3339 2.251338 AGTACTCCCTCCATTCCCAGAT 59.749 50.000 0.00 0.00 0.00 2.90
3214 3340 1.651770 AGTACTCCCTCCATTCCCAGA 59.348 52.381 0.00 0.00 0.00 3.86
3215 3341 2.171448 CAAGTACTCCCTCCATTCCCAG 59.829 54.545 0.00 0.00 0.00 4.45
3216 3342 2.196595 CAAGTACTCCCTCCATTCCCA 58.803 52.381 0.00 0.00 0.00 4.37
3217 3343 1.490910 CCAAGTACTCCCTCCATTCCC 59.509 57.143 0.00 0.00 0.00 3.97
3218 3344 2.478292 TCCAAGTACTCCCTCCATTCC 58.522 52.381 0.00 0.00 0.00 3.01
3219 3345 3.711704 TCATCCAAGTACTCCCTCCATTC 59.288 47.826 0.00 0.00 0.00 2.67
3220 3346 3.736094 TCATCCAAGTACTCCCTCCATT 58.264 45.455 0.00 0.00 0.00 3.16
3221 3347 3.421394 TCATCCAAGTACTCCCTCCAT 57.579 47.619 0.00 0.00 0.00 3.41
3222 3348 2.940514 TCATCCAAGTACTCCCTCCA 57.059 50.000 0.00 0.00 0.00 3.86
3223 3349 3.108376 ACTTCATCCAAGTACTCCCTCC 58.892 50.000 0.00 0.00 44.13 4.30
3224 3350 3.515901 ACACTTCATCCAAGTACTCCCTC 59.484 47.826 0.00 0.00 44.14 4.30
3225 3351 3.521727 ACACTTCATCCAAGTACTCCCT 58.478 45.455 0.00 0.00 44.14 4.20
3226 3352 3.983044 ACACTTCATCCAAGTACTCCC 57.017 47.619 0.00 0.00 44.14 4.30
3227 3353 3.437049 GCAACACTTCATCCAAGTACTCC 59.563 47.826 0.00 0.00 44.14 3.85
3228 3354 3.437049 GGCAACACTTCATCCAAGTACTC 59.563 47.826 0.00 0.00 44.14 2.59
3229 3355 3.412386 GGCAACACTTCATCCAAGTACT 58.588 45.455 0.00 0.00 44.14 2.73
3230 3356 2.159627 CGGCAACACTTCATCCAAGTAC 59.840 50.000 0.00 0.00 44.14 2.73
3270 3396 3.312697 GTCTTCACCCACAGTTGAGTTTC 59.687 47.826 0.00 0.00 0.00 2.78
3273 3399 1.837439 TGTCTTCACCCACAGTTGAGT 59.163 47.619 0.00 0.00 0.00 3.41
3278 3404 4.020485 GGTACTTATGTCTTCACCCACAGT 60.020 45.833 0.00 0.00 0.00 3.55
3280 3406 3.262405 GGGTACTTATGTCTTCACCCACA 59.738 47.826 11.02 0.00 39.74 4.17
3282 3408 2.498481 CGGGTACTTATGTCTTCACCCA 59.502 50.000 14.61 0.00 39.88 4.51
3317 3443 3.939837 TACCTGAGCTGCAGCGCAC 62.940 63.158 36.73 27.72 45.55 5.34
3321 3447 1.939255 GAGAATTACCTGAGCTGCAGC 59.061 52.381 31.53 31.53 43.50 5.25
3322 3448 2.935201 GTGAGAATTACCTGAGCTGCAG 59.065 50.000 10.11 10.11 44.49 4.41
3323 3449 2.302733 TGTGAGAATTACCTGAGCTGCA 59.697 45.455 1.02 0.00 0.00 4.41
3324 3450 2.977914 TGTGAGAATTACCTGAGCTGC 58.022 47.619 0.00 0.00 0.00 5.25
3325 3451 6.373774 AGAATTTGTGAGAATTACCTGAGCTG 59.626 38.462 0.00 0.00 29.75 4.24
3326 3452 6.479884 AGAATTTGTGAGAATTACCTGAGCT 58.520 36.000 0.00 0.00 29.75 4.09
3353 3481 9.434420 AACTCAAAATCTAGTCAGATCTGAAAG 57.566 33.333 26.70 23.99 40.81 2.62
3354 3482 9.212641 CAACTCAAAATCTAGTCAGATCTGAAA 57.787 33.333 26.70 16.47 40.81 2.69
3362 3490 3.997021 ACCGCAACTCAAAATCTAGTCAG 59.003 43.478 0.00 0.00 0.00 3.51
3364 3492 4.451096 TGAACCGCAACTCAAAATCTAGTC 59.549 41.667 0.00 0.00 0.00 2.59
3379 3507 3.047280 GCCGACACATGAACCGCA 61.047 61.111 0.00 0.00 0.00 5.69
3385 3513 0.459899 ATTAGCGAGCCGACACATGA 59.540 50.000 0.00 0.00 0.00 3.07
3388 3516 0.037697 AACATTAGCGAGCCGACACA 60.038 50.000 0.00 0.00 0.00 3.72
3393 3521 1.290203 ATGTGAACATTAGCGAGCCG 58.710 50.000 0.00 0.00 31.37 5.52
3418 3546 1.361204 TCCAGATCCAGAAACCTGCA 58.639 50.000 0.00 0.00 0.00 4.41
3446 3574 3.309296 TCACTCCAGACTTGTTTCCTCT 58.691 45.455 0.00 0.00 0.00 3.69
3466 3594 3.121778 GGTTGCGCTGAAAACATGATTTC 59.878 43.478 18.65 18.65 39.28 2.17
3486 3614 2.927856 TGTGCTCCATCCCACGGT 60.928 61.111 0.00 0.00 34.77 4.83
3524 3652 3.134804 TGTTAGCTTGAATCTAGAGGGGC 59.865 47.826 0.00 0.00 0.00 5.80
3530 3658 9.255304 GGACTAAGATTGTTAGCTTGAATCTAG 57.745 37.037 12.45 11.97 35.78 2.43
3554 3682 2.447443 ACAGAGACTGCAATCTACGGA 58.553 47.619 0.00 0.00 34.37 4.69
3555 3683 2.949451 ACAGAGACTGCAATCTACGG 57.051 50.000 0.00 0.00 34.37 4.02
3556 3684 4.357018 TGTACAGAGACTGCAATCTACG 57.643 45.455 0.00 0.00 34.37 3.51
3557 3685 7.265647 TCTATGTACAGAGACTGCAATCTAC 57.734 40.000 16.09 0.00 34.37 2.59
3559 3687 6.975196 ATCTATGTACAGAGACTGCAATCT 57.025 37.500 21.83 0.00 34.37 2.40
3560 3688 6.073873 GCAATCTATGTACAGAGACTGCAATC 60.074 42.308 35.82 15.82 46.99 2.67
3561 3689 5.757320 GCAATCTATGTACAGAGACTGCAAT 59.243 40.000 35.82 14.42 46.99 3.56
3562 3690 5.111989 GCAATCTATGTACAGAGACTGCAA 58.888 41.667 35.82 11.94 46.99 4.08
3563 3691 4.686972 GCAATCTATGTACAGAGACTGCA 58.313 43.478 35.82 12.59 46.99 4.41
3595 3756 8.850452 GCAGACACAAATAAGCTTTTTATACAC 58.150 33.333 3.20 0.00 0.00 2.90
3632 3793 2.035832 TGCTGACTGAAATCGTGAGACA 59.964 45.455 0.00 0.00 46.97 3.41
3633 3794 2.677199 TGCTGACTGAAATCGTGAGAC 58.323 47.619 0.00 0.00 46.97 3.36
3635 3796 4.675190 ATTTGCTGACTGAAATCGTGAG 57.325 40.909 0.00 0.00 0.00 3.51
3636 3797 5.008514 TCAAATTTGCTGACTGAAATCGTGA 59.991 36.000 13.54 0.00 0.00 4.35
3637 3798 5.214417 TCAAATTTGCTGACTGAAATCGTG 58.786 37.500 13.54 0.00 0.00 4.35
3638 3799 5.437289 TCAAATTTGCTGACTGAAATCGT 57.563 34.783 13.54 0.00 0.00 3.73
3639 3800 5.220154 GCATCAAATTTGCTGACTGAAATCG 60.220 40.000 22.75 0.00 37.14 3.34
3640 3801 6.091123 GCATCAAATTTGCTGACTGAAATC 57.909 37.500 22.75 2.11 37.14 2.17
3703 3865 1.736126 AGCACATTCATCGCAGTTGAG 59.264 47.619 0.00 0.00 0.00 3.02
3748 3912 4.700213 GGTAGCATGGCAGAAACTTTTCTA 59.300 41.667 3.91 0.00 45.23 2.10
3772 3936 7.807977 ATTCATAATATCCGGGTATCAATGC 57.192 36.000 18.75 0.00 0.00 3.56
3828 3992 5.418524 TCATGACATGGAAGTTTTGGTATGG 59.581 40.000 15.37 0.00 0.00 2.74
3842 4006 1.372582 CGGTTCTGGTCATGACATGG 58.627 55.000 26.47 15.20 0.00 3.66
3847 4011 0.396435 AAGTGCGGTTCTGGTCATGA 59.604 50.000 0.00 0.00 0.00 3.07
3904 4068 7.000575 CGAACTATTCTTTCGCCTTTATTCA 57.999 36.000 0.00 0.00 39.43 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.