Multiple sequence alignment - TraesCS2B01G437200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G437200 chr2B 100.000 9943 0 0 1 9943 629016583 629026525 0.000000e+00 18362.0
1 TraesCS2B01G437200 chr2B 87.942 1667 143 31 6866 8495 629105696 629107341 0.000000e+00 1912.0
2 TraesCS2B01G437200 chr2B 84.087 1282 178 19 5439 6698 629104248 629105525 0.000000e+00 1214.0
3 TraesCS2B01G437200 chr2B 79.788 1133 186 34 3978 5088 629102973 629104084 0.000000e+00 784.0
4 TraesCS2B01G437200 chr2B 83.850 613 63 24 8576 9184 629107413 629107993 1.460000e-152 551.0
5 TraesCS2B01G437200 chr2B 81.327 407 51 17 1616 2018 629100877 629101262 3.490000e-79 307.0
6 TraesCS2B01G437200 chr2B 77.412 456 81 17 2816 3252 629102138 629102590 1.660000e-62 252.0
7 TraesCS2B01G437200 chr2B 98.718 78 0 1 2717 2794 559428523 559428599 4.840000e-28 137.0
8 TraesCS2B01G437200 chr2B 89.320 103 8 3 2692 2794 37574439 37574538 1.050000e-24 126.0
9 TraesCS2B01G437200 chr2B 100.000 28 0 0 6889 6916 629023415 629023442 1.800000e-02 52.8
10 TraesCS2B01G437200 chr2B 100.000 28 0 0 6833 6860 629023471 629023498 1.800000e-02 52.8
11 TraesCS2B01G437200 chr2D 95.130 4312 146 28 5253 9529 529535505 529539787 0.000000e+00 6741.0
12 TraesCS2B01G437200 chr2D 91.109 1822 85 37 733 2485 529530933 529532746 0.000000e+00 2396.0
13 TraesCS2B01G437200 chr2D 96.183 1467 43 8 3663 5129 529534053 529535506 0.000000e+00 2386.0
14 TraesCS2B01G437200 chr2D 94.964 834 35 5 2790 3617 529533220 529534052 0.000000e+00 1301.0
15 TraesCS2B01G437200 chr2D 82.829 1421 198 34 5439 6820 529546028 529547441 0.000000e+00 1230.0
16 TraesCS2B01G437200 chr2D 92.780 831 48 7 7667 8492 529548228 529549051 0.000000e+00 1192.0
17 TraesCS2B01G437200 chr2D 79.982 1134 183 36 3978 5088 529544752 529545864 0.000000e+00 797.0
18 TraesCS2B01G437200 chr2D 85.090 778 48 31 1 733 529530140 529530894 0.000000e+00 732.0
19 TraesCS2B01G437200 chr2D 86.677 623 51 16 8576 9184 529549108 529549712 0.000000e+00 662.0
20 TraesCS2B01G437200 chr2D 85.690 587 62 11 6951 7526 529547636 529548211 5.140000e-167 599.0
21 TraesCS2B01G437200 chr2D 78.091 744 134 24 7720 8445 529558824 529559556 2.550000e-120 444.0
22 TraesCS2B01G437200 chr2D 81.159 414 51 19 1616 2018 529542584 529542981 3.490000e-79 307.0
23 TraesCS2B01G437200 chr2D 77.518 427 74 14 2816 3223 529543913 529544336 4.640000e-58 237.0
24 TraesCS2B01G437200 chr2D 97.015 134 3 1 2495 2628 529532903 529533035 3.610000e-54 224.0
25 TraesCS2B01G437200 chr2D 86.822 129 17 0 5127 5255 376857621 376857749 2.890000e-30 145.0
26 TraesCS2B01G437200 chr2D 95.294 85 4 0 2626 2710 529533137 529533221 1.740000e-27 135.0
27 TraesCS2B01G437200 chr2D 100.000 28 0 0 6833 6860 529537144 529537171 1.800000e-02 52.8
28 TraesCS2B01G437200 chr2A 95.134 3021 93 23 6213 9207 674029669 674032661 0.000000e+00 4715.0
29 TraesCS2B01G437200 chr2A 85.103 3833 420 90 5439 9184 674048422 674052190 0.000000e+00 3775.0
30 TraesCS2B01G437200 chr2A 94.824 2241 95 8 2894 5129 674026446 674028670 0.000000e+00 3476.0
31 TraesCS2B01G437200 chr2A 94.335 1218 44 10 1433 2628 674024680 674025894 0.000000e+00 1844.0
32 TraesCS2B01G437200 chr2A 96.548 985 27 3 5253 6231 674028669 674029652 0.000000e+00 1624.0
33 TraesCS2B01G437200 chr2A 83.066 1435 114 55 1 1354 674023178 674024564 0.000000e+00 1184.0
34 TraesCS2B01G437200 chr2A 79.550 1110 172 34 3978 5069 674047178 674048250 0.000000e+00 741.0
35 TraesCS2B01G437200 chr2A 77.778 441 75 17 2816 3237 674046239 674046675 5.960000e-62 250.0
36 TraesCS2B01G437200 chr2A 88.293 205 23 1 1618 1821 674044744 674044948 2.770000e-60 244.0
37 TraesCS2B01G437200 chr2A 94.545 110 3 3 2790 2896 674026078 674026187 6.180000e-37 167.0
38 TraesCS2B01G437200 chr2A 93.617 47 3 0 9241 9287 674032665 674032711 4.980000e-08 71.3
39 TraesCS2B01G437200 chr2A 100.000 28 0 0 6889 6916 674030300 674030327 1.800000e-02 52.8
40 TraesCS2B01G437200 chr2A 100.000 28 0 0 6833 6860 674030356 674030383 1.800000e-02 52.8
41 TraesCS2B01G437200 chr7D 85.917 987 108 19 7544 8517 17865065 17864097 0.000000e+00 1024.0
42 TraesCS2B01G437200 chr7D 81.585 1211 173 29 5442 6626 17867320 17866134 0.000000e+00 955.0
43 TraesCS2B01G437200 chr7D 77.919 1105 174 49 3962 5047 17868570 17867517 8.480000e-175 625.0
44 TraesCS2B01G437200 chr7D 85.545 422 44 11 7070 7483 17865482 17865070 9.230000e-115 425.0
45 TraesCS2B01G437200 chr7D 84.175 297 44 2 8580 8873 17863926 17863630 1.630000e-72 285.0
46 TraesCS2B01G437200 chr7D 77.404 416 68 19 2830 3223 17869382 17868971 3.610000e-54 224.0
47 TraesCS2B01G437200 chr7D 92.366 131 9 1 5128 5257 243048582 243048712 1.710000e-42 185.0
48 TraesCS2B01G437200 chr7D 91.339 127 11 0 9528 9654 351765664 351765538 3.690000e-39 174.0
49 TraesCS2B01G437200 chr4A 85.816 987 109 18 7544 8516 715718460 715719429 0.000000e+00 1018.0
50 TraesCS2B01G437200 chr4A 82.129 789 126 9 5442 6221 715877288 715876506 0.000000e+00 662.0
51 TraesCS2B01G437200 chr4A 77.980 1099 177 47 3962 5047 715715005 715716051 6.550000e-176 628.0
52 TraesCS2B01G437200 chr4A 78.098 1041 168 43 3962 4991 715878938 715877947 1.100000e-168 604.0
53 TraesCS2B01G437200 chr4A 83.894 416 47 11 7070 7475 715718044 715718449 7.290000e-101 379.0
54 TraesCS2B01G437200 chr4A 78.481 395 61 20 2830 3204 715714209 715714599 4.640000e-58 237.0
55 TraesCS2B01G437200 chr4A 77.157 394 68 19 2830 3204 715879753 715879363 1.010000e-49 209.0
56 TraesCS2B01G437200 chr4A 87.218 133 17 0 5122 5254 534541465 534541597 1.730000e-32 152.0
57 TraesCS2B01G437200 chr4A 88.350 103 9 3 9550 9651 215264400 215264500 4.880000e-23 121.0
58 TraesCS2B01G437200 chr7A 85.223 988 113 20 7544 8517 17359531 17358563 0.000000e+00 985.0
59 TraesCS2B01G437200 chr7A 80.925 1211 166 34 5442 6626 17361788 17360617 0.000000e+00 896.0
60 TraesCS2B01G437200 chr7A 78.654 1040 160 42 3962 4991 17363031 17362044 1.410000e-177 634.0
61 TraesCS2B01G437200 chr7A 82.450 547 65 21 6950 7483 17360064 17359536 5.480000e-122 449.0
62 TraesCS2B01G437200 chr7A 84.175 297 44 2 8580 8873 17358391 17358095 1.630000e-72 285.0
63 TraesCS2B01G437200 chr7A 85.321 218 28 3 1615 1828 17364809 17364592 1.300000e-53 222.0
64 TraesCS2B01G437200 chr7A 89.423 104 7 3 2699 2801 684095427 684095327 2.910000e-25 128.0
65 TraesCS2B01G437200 chr6B 79.881 671 67 21 7656 8318 250763132 250762522 7.140000e-116 429.0
66 TraesCS2B01G437200 chr6B 90.278 144 11 3 5127 5269 62005050 62004909 1.710000e-42 185.0
67 TraesCS2B01G437200 chr7B 92.674 273 20 0 9671 9943 650107988 650107716 2.600000e-105 394.0
68 TraesCS2B01G437200 chr7B 93.985 133 7 1 5124 5255 332093455 332093587 6.090000e-47 200.0
69 TraesCS2B01G437200 chr7B 95.161 124 6 0 9528 9651 650108100 650107977 7.880000e-46 196.0
70 TraesCS2B01G437200 chr7B 88.000 125 14 1 9528 9651 530866245 530866369 8.050000e-31 147.0
71 TraesCS2B01G437200 chr7B 92.929 99 4 3 2698 2794 35088632 35088729 3.740000e-29 141.0
72 TraesCS2B01G437200 chr7B 90.291 103 4 5 2701 2801 307217883 307217785 8.100000e-26 130.0
73 TraesCS2B01G437200 chr5B 85.818 275 16 3 9670 9943 646243105 646243357 4.580000e-68 270.0
74 TraesCS2B01G437200 chr5B 95.455 110 5 0 9528 9637 646241433 646241542 1.030000e-39 176.0
75 TraesCS2B01G437200 chr5B 87.597 129 16 0 5128 5256 450458549 450458421 6.220000e-32 150.0
76 TraesCS2B01G437200 chr5B 91.753 97 4 3 2705 2801 577520600 577520508 2.250000e-26 132.0
77 TraesCS2B01G437200 chr6D 91.111 135 10 2 5125 5257 6014161 6014027 2.210000e-41 182.0
78 TraesCS2B01G437200 chr3A 84.574 188 23 4 7316 7500 25405871 25406055 2.210000e-41 182.0
79 TraesCS2B01G437200 chr3A 87.692 130 16 0 5125 5254 198491946 198491817 1.730000e-32 152.0
80 TraesCS2B01G437200 chr4B 90.551 127 12 0 5128 5254 517963789 517963663 1.720000e-37 169.0
81 TraesCS2B01G437200 chr4B 96.471 85 2 1 2710 2794 648316349 648316432 1.350000e-28 139.0
82 TraesCS2B01G437200 chr1D 87.597 129 14 2 9528 9655 446657664 446657791 2.240000e-31 148.0
83 TraesCS2B01G437200 chr3B 98.750 80 0 1 2712 2791 312180577 312180499 3.740000e-29 141.0
84 TraesCS2B01G437200 chr4D 91.667 96 6 2 2699 2793 23322696 23322790 2.250000e-26 132.0
85 TraesCS2B01G437200 chr1A 92.647 68 5 0 9555 9622 588296821 588296754 2.290000e-16 99.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G437200 chr2B 629016583 629026525 9942 False 6155.866667 18362 100.000000 1 9943 3 chr2B.!!$F3 9942
1 TraesCS2B01G437200 chr2B 629100877 629107993 7116 False 836.666667 1912 82.401000 1616 9184 6 chr2B.!!$F4 7568
2 TraesCS2B01G437200 chr2D 529530140 529539787 9647 False 1745.975000 6741 94.348125 1 9529 8 chr2D.!!$F3 9528
3 TraesCS2B01G437200 chr2D 529542584 529549712 7128 False 717.714286 1230 83.805000 1616 9184 7 chr2D.!!$F4 7568
4 TraesCS2B01G437200 chr2D 529558824 529559556 732 False 444.000000 444 78.091000 7720 8445 1 chr2D.!!$F2 725
5 TraesCS2B01G437200 chr2A 674023178 674032711 9533 False 1465.211111 4715 94.674333 1 9287 9 chr2A.!!$F1 9286
6 TraesCS2B01G437200 chr2A 674044744 674052190 7446 False 1252.500000 3775 82.681000 1618 9184 4 chr2A.!!$F2 7566
7 TraesCS2B01G437200 chr7D 17863630 17869382 5752 True 589.666667 1024 82.090833 2830 8873 6 chr7D.!!$R2 6043
8 TraesCS2B01G437200 chr4A 715714209 715719429 5220 False 565.500000 1018 81.542750 2830 8516 4 chr4A.!!$F3 5686
9 TraesCS2B01G437200 chr4A 715876506 715879753 3247 True 491.666667 662 79.128000 2830 6221 3 chr4A.!!$R1 3391
10 TraesCS2B01G437200 chr7A 17358095 17364809 6714 True 578.500000 985 82.791333 1615 8873 6 chr7A.!!$R2 7258
11 TraesCS2B01G437200 chr6B 250762522 250763132 610 True 429.000000 429 79.881000 7656 8318 1 chr6B.!!$R2 662
12 TraesCS2B01G437200 chr5B 646241433 646243357 1924 False 223.000000 270 90.636500 9528 9943 2 chr5B.!!$F1 415

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
104 111 0.179233 GACGGACGGTTTCGCAATTC 60.179 55.000 0.00 0.00 40.63 2.17 F
807 908 0.397394 TACGGGGCAGGCTACATGTA 60.397 55.000 5.25 5.25 0.00 2.29 F
1594 1832 1.065928 CCTAGCAGCGGTCTAACGG 59.934 63.158 0.00 0.00 0.00 4.44 F
2755 3938 1.450134 TGCATGTAGCTCCCGCTTG 60.450 57.895 0.00 0.00 46.47 4.01 F
2787 3970 0.605589 GGAAGGGTCCGACCACTTTG 60.606 60.000 19.43 0.00 41.02 2.77 F
2866 4053 1.037579 GCTTCCTTCGGAATTGGGGG 61.038 60.000 0.00 0.00 41.23 5.40 F
3491 4988 2.368221 CTCCATCTGAGGCCTCTTAAGG 59.632 54.545 32.28 26.06 37.71 2.69 F
4496 6126 2.670414 CGCTAATGCAGAGCTATAAGCC 59.330 50.000 18.35 0.00 39.88 4.35 F
5029 6676 1.661341 CTTAGGCACATGAGCTGACC 58.339 55.000 14.91 0.00 34.17 4.02 F
5337 7391 2.380084 AGCATGCAATCAAGCCAAAG 57.620 45.000 21.98 0.00 37.62 2.77 F
7162 9627 0.238289 GTGTGATTGCGGGAGTTGTG 59.762 55.000 0.00 0.00 0.00 3.33 F
8538 11053 2.223377 CGGTCTCCTGCAACAAGTAAAC 59.777 50.000 0.00 0.00 0.00 2.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1721 1963 0.511221 CGATGTTGGTGTTGTCGGTC 59.489 55.000 0.00 0.00 0.00 4.79 R
2716 3899 0.392706 CGGGCTGCCCTTTTTCTTTT 59.607 50.000 33.39 0.00 42.67 2.27 R
2768 3951 0.605589 CAAAGTGGTCGGACCCTTCC 60.606 60.000 23.81 9.51 37.50 3.46 R
3877 5496 1.495148 TCTCTAGGATCGCTGGAAGGA 59.505 52.381 0.00 0.00 0.00 3.36 R
4153 5773 3.885724 TCGTCTGCACCATAGAAATCA 57.114 42.857 0.00 0.00 0.00 2.57 R
4476 6104 3.936564 AGGCTTATAGCTCTGCATTAGC 58.063 45.455 12.14 12.14 41.99 3.09 R
4973 6618 0.482446 TGTTGGGCTGGATTTGGTCT 59.518 50.000 0.00 0.00 0.00 3.85 R
5893 7961 0.978907 TGATGCAGCTCCAAGAGTGA 59.021 50.000 2.53 0.00 31.39 3.41 R
6029 8097 1.200020 CTTGCATTCCGGAACAGTTCC 59.800 52.381 21.56 21.18 46.62 3.62 R
7263 9728 2.099405 CAATTTGGTCCTGGGCGTATT 58.901 47.619 0.00 0.00 0.00 1.89 R
8834 11461 0.170339 CACTGACGTCGGTGCTCATA 59.830 55.000 36.95 5.45 45.06 2.15 R
9413 12074 0.033504 GAAGACGGCTGTCCAGTTCA 59.966 55.000 22.17 0.00 46.74 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 40 2.032528 CAAGGCTCTGGCACGGAA 59.967 61.111 0.00 0.00 46.55 4.30
101 108 3.031457 CGACGGACGGTTTCGCAA 61.031 61.111 0.00 0.00 40.63 4.85
102 109 2.377310 CGACGGACGGTTTCGCAAT 61.377 57.895 0.00 0.00 40.63 3.56
103 110 1.864176 GACGGACGGTTTCGCAATT 59.136 52.632 0.00 0.00 40.63 2.32
104 111 0.179233 GACGGACGGTTTCGCAATTC 60.179 55.000 0.00 0.00 40.63 2.17
105 112 1.225637 CGGACGGTTTCGCAATTCG 60.226 57.895 0.00 0.00 40.63 3.34
175 182 2.350192 CCGTACGTAAATCAAGCATGCA 59.650 45.455 21.98 0.00 0.00 3.96
177 184 3.181525 CGTACGTAAATCAAGCATGCACA 60.182 43.478 21.98 2.71 0.00 4.57
190 197 2.677613 GCATGCACAATCCCGGAAAATT 60.678 45.455 14.21 0.00 0.00 1.82
194 201 3.260380 TGCACAATCCCGGAAAATTGAAT 59.740 39.130 22.83 6.41 36.57 2.57
221 228 2.607892 GCACCGCTCTGTTCACACC 61.608 63.158 0.00 0.00 0.00 4.16
248 255 4.678256 ACTCCTACATCGTCCATCCATAT 58.322 43.478 0.00 0.00 0.00 1.78
286 293 5.405571 CACCTGTCCTGTCGCATTTATATAC 59.594 44.000 0.00 0.00 0.00 1.47
287 294 5.304614 ACCTGTCCTGTCGCATTTATATACT 59.695 40.000 0.00 0.00 0.00 2.12
288 295 6.492429 ACCTGTCCTGTCGCATTTATATACTA 59.508 38.462 0.00 0.00 0.00 1.82
323 330 4.455877 AGTCAACCATGTTTCGATCTTTCC 59.544 41.667 0.00 0.00 0.00 3.13
329 336 1.621814 TGTTTCGATCTTTCCCCGTCT 59.378 47.619 0.00 0.00 0.00 4.18
377 385 4.345837 TCCCCGTCTTAGAAAGAAAGAACA 59.654 41.667 0.00 0.00 39.67 3.18
386 394 3.877508 AGAAAGAAAGAACACGTCCAAGG 59.122 43.478 0.00 0.00 0.00 3.61
387 395 3.277142 AAGAAAGAACACGTCCAAGGT 57.723 42.857 0.00 0.00 0.00 3.50
388 396 2.561569 AGAAAGAACACGTCCAAGGTG 58.438 47.619 0.00 0.00 39.65 4.00
429 442 2.582052 ACACGCAGAGGGAAAATCAAA 58.418 42.857 0.00 0.00 0.00 2.69
536 580 1.487482 CGAAGTGTCAAAGCTGTCGA 58.513 50.000 0.00 0.00 0.00 4.20
689 741 7.539034 TTCCAATCCGACATCTGAGATTATA 57.461 36.000 0.00 0.00 0.00 0.98
691 743 6.071334 TCCAATCCGACATCTGAGATTATACC 60.071 42.308 0.00 0.00 0.00 2.73
734 786 5.298527 ACACGTGATCGAGGTATTCTAATCA 59.701 40.000 25.01 0.00 40.62 2.57
803 904 2.284039 TGTACGGGGCAGGCTACA 60.284 61.111 0.00 0.00 0.00 2.74
804 905 1.686325 CTGTACGGGGCAGGCTACAT 61.686 60.000 0.00 0.00 0.00 2.29
805 906 1.227556 GTACGGGGCAGGCTACATG 60.228 63.158 0.00 0.00 0.00 3.21
806 907 1.687840 TACGGGGCAGGCTACATGT 60.688 57.895 2.69 2.69 0.00 3.21
807 908 0.397394 TACGGGGCAGGCTACATGTA 60.397 55.000 5.25 5.25 0.00 2.29
808 909 1.227556 CGGGGCAGGCTACATGTAC 60.228 63.158 0.08 0.00 0.00 2.90
842 943 1.079197 TCGTGTACATGCCTGCCTG 60.079 57.895 10.38 0.00 0.00 4.85
907 1023 5.359292 AGGCTTTATCTTCTTCCTTGATTGC 59.641 40.000 0.00 0.00 0.00 3.56
942 1058 2.679059 GCTCACCAGCTCTCTTATTGCA 60.679 50.000 0.00 0.00 43.09 4.08
1102 1247 1.669760 CCAGGCGACGGTAAGCAAA 60.670 57.895 9.72 0.00 34.54 3.68
1157 1307 2.789249 GCCGCGCGTTCCTAAATT 59.211 55.556 29.95 0.00 0.00 1.82
1159 1309 1.702491 GCCGCGCGTTCCTAAATTCT 61.702 55.000 29.95 0.00 0.00 2.40
1182 1332 4.160439 TGAACCATCTTGCTCGAATAGACT 59.840 41.667 0.00 0.00 0.00 3.24
1211 1361 2.303022 CCACTTCTCTTGGTCTTGGCTA 59.697 50.000 0.00 0.00 0.00 3.93
1258 1429 1.838112 TTTTGCTGCCCGATTGATCT 58.162 45.000 0.00 0.00 0.00 2.75
1274 1445 6.742718 CGATTGATCTGTAAAAACACCATGAC 59.257 38.462 0.00 0.00 0.00 3.06
1285 1458 1.831106 ACACCATGACTCATTCGCCTA 59.169 47.619 0.00 0.00 0.00 3.93
1290 1463 3.496130 CCATGACTCATTCGCCTATGTTC 59.504 47.826 0.00 0.00 0.00 3.18
1324 1501 1.380302 GAAGAAAGCAGGGGAGGCA 59.620 57.895 0.00 0.00 0.00 4.75
1399 1584 2.626266 TCATCTGCATGCCAAATGATCC 59.374 45.455 16.68 0.00 0.00 3.36
1408 1593 1.604278 GCCAAATGATCCCGTTAGCTC 59.396 52.381 0.00 0.00 0.00 4.09
1410 1595 3.545703 CCAAATGATCCCGTTAGCTCTT 58.454 45.455 0.00 0.00 0.00 2.85
1413 1598 1.860641 TGATCCCGTTAGCTCTTCCA 58.139 50.000 0.00 0.00 0.00 3.53
1414 1599 2.184533 TGATCCCGTTAGCTCTTCCAA 58.815 47.619 0.00 0.00 0.00 3.53
1417 1602 2.253610 TCCCGTTAGCTCTTCCAAGAA 58.746 47.619 0.00 0.00 34.03 2.52
1418 1603 2.233922 TCCCGTTAGCTCTTCCAAGAAG 59.766 50.000 0.00 0.00 34.03 2.85
1514 1751 3.159353 GGCACGGAAAAGTCAAAAACT 57.841 42.857 0.00 0.00 41.10 2.66
1591 1829 2.782222 CGGCCTAGCAGCGGTCTAA 61.782 63.158 0.00 0.00 0.00 2.10
1594 1832 1.065928 CCTAGCAGCGGTCTAACGG 59.934 63.158 0.00 0.00 0.00 4.44
1600 1838 2.508663 GCGGTCTAACGGCTGACC 60.509 66.667 0.00 11.36 46.69 4.02
1993 2634 5.711976 CCTTGACCAATTTGTATGGACTCTT 59.288 40.000 0.00 0.00 40.56 2.85
2117 3009 7.278424 CAGTCTCACACCAAATTCAATTGTTTT 59.722 33.333 5.13 4.52 0.00 2.43
2232 3127 4.997905 ACATGTGAGATTCAGAACGTTG 57.002 40.909 5.00 0.00 0.00 4.10
2292 3194 8.441312 ACTTTGCAATGTTTTCATTTGATCTT 57.559 26.923 11.92 0.00 46.94 2.40
2360 3262 6.428771 CGTTATCTGGACCTTTACCAAAAGAA 59.571 38.462 0.00 0.00 44.14 2.52
2364 3266 5.104277 TCTGGACCTTTACCAAAAGAACTCA 60.104 40.000 0.00 0.00 44.14 3.41
2675 3856 2.554142 CTGATAGCATTCGTGCTTCCA 58.446 47.619 8.34 6.31 43.52 3.53
2691 3874 6.919662 CGTGCTTCCAAGAATATAAATTGCAT 59.080 34.615 0.00 0.00 0.00 3.96
2697 3880 9.941325 TTCCAAGAATATAAATTGCATGTTGTT 57.059 25.926 0.00 0.00 0.00 2.83
2710 3893 7.719778 TTGCATGTTGTTAATTTTGCATGTA 57.280 28.000 0.00 0.00 39.56 2.29
2711 3894 7.719778 TGCATGTTGTTAATTTTGCATGTAA 57.280 28.000 0.00 0.00 35.36 2.41
2712 3895 8.146479 TGCATGTTGTTAATTTTGCATGTAAA 57.854 26.923 4.71 4.71 35.36 2.01
2713 3896 8.615211 TGCATGTTGTTAATTTTGCATGTAAAA 58.385 25.926 21.54 21.54 35.36 1.52
2714 3897 9.105206 GCATGTTGTTAATTTTGCATGTAAAAG 57.895 29.630 23.11 9.58 36.88 2.27
2728 3911 8.207521 TGCATGTAAAAGAAAAAGAAAAAGGG 57.792 30.769 0.00 0.00 0.00 3.95
2729 3912 7.132213 GCATGTAAAAGAAAAAGAAAAAGGGC 58.868 34.615 0.00 0.00 0.00 5.19
2730 3913 7.201688 GCATGTAAAAGAAAAAGAAAAAGGGCA 60.202 33.333 0.00 0.00 0.00 5.36
2731 3914 7.841915 TGTAAAAGAAAAAGAAAAAGGGCAG 57.158 32.000 0.00 0.00 0.00 4.85
2732 3915 5.818136 AAAAGAAAAAGAAAAAGGGCAGC 57.182 34.783 0.00 0.00 0.00 5.25
2733 3916 3.475566 AGAAAAAGAAAAAGGGCAGCC 57.524 42.857 1.26 1.26 0.00 4.85
2734 3917 2.104792 AGAAAAAGAAAAAGGGCAGCCC 59.895 45.455 24.90 24.90 45.90 5.19
2744 3927 4.794648 GGCAGCCCGGTGCATGTA 62.795 66.667 19.47 0.00 45.93 2.29
2745 3928 3.204827 GCAGCCCGGTGCATGTAG 61.205 66.667 13.70 0.91 43.41 2.74
2746 3929 3.204827 CAGCCCGGTGCATGTAGC 61.205 66.667 15.92 2.56 44.83 3.58
2747 3930 3.402681 AGCCCGGTGCATGTAGCT 61.403 61.111 15.92 4.82 45.94 3.32
2748 3931 2.897350 GCCCGGTGCATGTAGCTC 60.897 66.667 11.25 0.00 45.94 4.09
2754 3937 1.450312 GTGCATGTAGCTCCCGCTT 60.450 57.895 0.00 0.00 46.47 4.68
2755 3938 1.450134 TGCATGTAGCTCCCGCTTG 60.450 57.895 0.00 0.00 46.47 4.01
2756 3939 2.828128 GCATGTAGCTCCCGCTTGC 61.828 63.158 0.00 0.00 46.47 4.01
2757 3940 2.202932 ATGTAGCTCCCGCTTGCG 60.203 61.111 8.14 8.14 46.47 4.85
2760 3943 4.819761 TAGCTCCCGCTTGCGCAG 62.820 66.667 11.31 6.32 46.47 5.18
2776 3959 4.735599 AGGGTCCGGGGAAGGGTC 62.736 72.222 0.00 0.00 0.00 4.46
2783 3966 3.714001 GGGGAAGGGTCCGACCAC 61.714 72.222 19.43 8.70 46.04 4.16
2784 3967 2.606826 GGGAAGGGTCCGACCACT 60.607 66.667 19.43 10.80 46.04 4.00
2785 3968 2.222013 GGGAAGGGTCCGACCACTT 61.222 63.158 19.43 17.88 46.04 3.16
2786 3969 1.759236 GGAAGGGTCCGACCACTTT 59.241 57.895 19.43 9.96 41.02 2.66
2787 3970 0.605589 GGAAGGGTCCGACCACTTTG 60.606 60.000 19.43 0.00 41.02 2.77
2788 3971 0.605589 GAAGGGTCCGACCACTTTGG 60.606 60.000 19.43 0.00 41.02 3.28
2789 3972 2.033602 GGGTCCGACCACTTTGGG 59.966 66.667 19.43 0.00 43.37 4.12
2790 3973 2.826003 GGGTCCGACCACTTTGGGT 61.826 63.158 19.43 0.00 43.37 4.51
2802 3985 5.757988 ACCACTTTGGGTCTAACTTGTAAA 58.242 37.500 0.00 0.00 43.37 2.01
2805 3988 8.000127 ACCACTTTGGGTCTAACTTGTAAATTA 59.000 33.333 0.00 0.00 43.37 1.40
2866 4053 1.037579 GCTTCCTTCGGAATTGGGGG 61.038 60.000 0.00 0.00 41.23 5.40
2898 4346 7.973388 GCCAAACTTGAGCAATTGTATGTATTA 59.027 33.333 7.40 0.00 0.00 0.98
2928 4390 3.575805 AGACCCCATTTTTCTTCAAGCA 58.424 40.909 0.00 0.00 0.00 3.91
3223 4702 7.824779 ACCTGGAATCTAACAGATTTGTAAGAC 59.175 37.037 0.00 0.00 44.41 3.01
3237 4716 5.661056 TTGTAAGACCGTCATTGATCTCT 57.339 39.130 0.40 0.00 0.00 3.10
3239 4718 2.593346 AGACCGTCATTGATCTCTGC 57.407 50.000 0.40 0.00 0.00 4.26
3293 4773 6.990341 AAAAGCCATCCAAATATTTTGCTC 57.010 33.333 0.00 0.00 0.00 4.26
3491 4988 2.368221 CTCCATCTGAGGCCTCTTAAGG 59.632 54.545 32.28 26.06 37.71 2.69
3561 5063 4.294970 ACATCTTCCTTCCCCCACTAAATT 59.705 41.667 0.00 0.00 0.00 1.82
3593 5095 6.183360 TGTGATGGTTGCTAATTTCGGATTAC 60.183 38.462 0.00 0.00 0.00 1.89
3812 5431 9.695526 CAATTCCATTTGAGAGTAACAATCAAA 57.304 29.630 7.58 7.58 44.47 2.69
3877 5496 6.992123 GGAAGTGGATTTTTCCAAAGAACATT 59.008 34.615 0.00 0.00 42.10 2.71
3885 5504 5.789643 TTTCCAAAGAACATTCCTTCCAG 57.210 39.130 0.00 0.00 0.00 3.86
3941 5560 6.439636 ACCTTATTGCTATCTCTGCCAATA 57.560 37.500 0.00 0.00 0.00 1.90
3972 5591 5.070446 ACCTGGATATGAAGAAACGATGCTA 59.930 40.000 0.00 0.00 0.00 3.49
4153 5773 4.893608 AGCGGCAGGACAAATAAAAATTT 58.106 34.783 1.45 0.00 0.00 1.82
4311 5931 7.887996 TTGATTTTGATGTAATTCACCAAGC 57.112 32.000 0.00 0.00 0.00 4.01
4373 6000 6.056236 GGTTTTGAGGAACTGTAGGATATCC 58.944 44.000 14.41 14.41 41.55 2.59
4476 6104 4.711721 CCAAGTGTCATTTGTGTGATACG 58.288 43.478 7.25 0.00 42.77 3.06
4494 6124 6.252441 GTGATACGCTAATGCAGAGCTATAAG 59.748 42.308 18.35 7.49 37.81 1.73
4495 6125 3.321497 ACGCTAATGCAGAGCTATAAGC 58.679 45.455 18.35 5.80 39.51 3.09
4496 6126 2.670414 CGCTAATGCAGAGCTATAAGCC 59.330 50.000 18.35 0.00 39.88 4.35
4497 6127 3.616076 CGCTAATGCAGAGCTATAAGCCT 60.616 47.826 18.35 0.00 39.88 4.58
4498 6128 4.380973 CGCTAATGCAGAGCTATAAGCCTA 60.381 45.833 18.35 0.00 39.88 3.93
4499 6129 5.669477 GCTAATGCAGAGCTATAAGCCTAT 58.331 41.667 14.58 0.00 39.74 2.57
4500 6130 6.460261 CGCTAATGCAGAGCTATAAGCCTATA 60.460 42.308 18.35 0.00 39.88 1.31
4501 6131 7.268586 GCTAATGCAGAGCTATAAGCCTATAA 58.731 38.462 14.58 0.00 39.74 0.98
4934 6579 4.397417 CCTTCTTGGGCTAGAAATTCACAG 59.603 45.833 0.00 0.00 33.96 3.66
4943 6588 6.106673 GGCTAGAAATTCACAGCTGTAAGTA 58.893 40.000 21.20 2.13 35.30 2.24
4973 6618 6.169557 TCTGAAACTTCTACTAACTTGCCA 57.830 37.500 0.00 0.00 0.00 4.92
5029 6676 1.661341 CTTAGGCACATGAGCTGACC 58.339 55.000 14.91 0.00 34.17 4.02
5134 6785 9.047947 ACTTCAATCTTACAAGTATTACTCCCT 57.952 33.333 0.00 0.00 0.00 4.20
5135 6786 9.535878 CTTCAATCTTACAAGTATTACTCCCTC 57.464 37.037 0.00 0.00 0.00 4.30
5136 6787 8.019656 TCAATCTTACAAGTATTACTCCCTCC 57.980 38.462 0.00 0.00 0.00 4.30
5137 6788 6.651975 ATCTTACAAGTATTACTCCCTCCG 57.348 41.667 0.00 0.00 0.00 4.63
5138 6789 5.513233 TCTTACAAGTATTACTCCCTCCGT 58.487 41.667 0.00 0.00 0.00 4.69
5139 6790 5.954150 TCTTACAAGTATTACTCCCTCCGTT 59.046 40.000 0.00 0.00 0.00 4.44
5140 6791 4.732672 ACAAGTATTACTCCCTCCGTTC 57.267 45.455 0.00 0.00 0.00 3.95
5141 6792 3.450096 ACAAGTATTACTCCCTCCGTTCC 59.550 47.826 0.00 0.00 0.00 3.62
5142 6793 3.393426 AGTATTACTCCCTCCGTTCCA 57.607 47.619 0.00 0.00 0.00 3.53
5143 6794 3.716431 AGTATTACTCCCTCCGTTCCAA 58.284 45.455 0.00 0.00 0.00 3.53
5144 6795 4.098894 AGTATTACTCCCTCCGTTCCAAA 58.901 43.478 0.00 0.00 0.00 3.28
5145 6796 4.720273 AGTATTACTCCCTCCGTTCCAAAT 59.280 41.667 0.00 0.00 0.00 2.32
5146 6797 4.586306 ATTACTCCCTCCGTTCCAAATT 57.414 40.909 0.00 0.00 0.00 1.82
5147 6798 5.703730 ATTACTCCCTCCGTTCCAAATTA 57.296 39.130 0.00 0.00 0.00 1.40
5148 6799 3.345508 ACTCCCTCCGTTCCAAATTAC 57.654 47.619 0.00 0.00 0.00 1.89
5149 6800 2.910977 ACTCCCTCCGTTCCAAATTACT 59.089 45.455 0.00 0.00 0.00 2.24
5150 6801 3.329814 ACTCCCTCCGTTCCAAATTACTT 59.670 43.478 0.00 0.00 0.00 2.24
5151 6802 3.681593 TCCCTCCGTTCCAAATTACTTG 58.318 45.455 0.00 0.00 34.52 3.16
5152 6803 3.328343 TCCCTCCGTTCCAAATTACTTGA 59.672 43.478 0.00 0.00 37.17 3.02
5153 6804 4.018779 TCCCTCCGTTCCAAATTACTTGAT 60.019 41.667 0.00 0.00 37.17 2.57
5154 6805 4.335594 CCCTCCGTTCCAAATTACTTGATC 59.664 45.833 0.00 0.00 37.17 2.92
5155 6806 4.335594 CCTCCGTTCCAAATTACTTGATCC 59.664 45.833 0.00 0.00 37.17 3.36
5156 6807 4.266714 TCCGTTCCAAATTACTTGATCCC 58.733 43.478 0.00 0.00 37.17 3.85
5157 6808 3.380320 CCGTTCCAAATTACTTGATCCCC 59.620 47.826 0.00 0.00 37.17 4.81
5158 6809 4.013728 CGTTCCAAATTACTTGATCCCCA 58.986 43.478 0.00 0.00 37.17 4.96
5159 6810 4.644685 CGTTCCAAATTACTTGATCCCCAT 59.355 41.667 0.00 0.00 37.17 4.00
5160 6811 5.127031 CGTTCCAAATTACTTGATCCCCATT 59.873 40.000 0.00 0.00 37.17 3.16
5161 6812 6.350949 CGTTCCAAATTACTTGATCCCCATTT 60.351 38.462 0.00 0.00 37.17 2.32
5162 6813 6.543430 TCCAAATTACTTGATCCCCATTTG 57.457 37.500 0.00 0.00 37.17 2.32
5163 6814 6.022315 TCCAAATTACTTGATCCCCATTTGT 58.978 36.000 0.00 0.00 37.17 2.83
5164 6815 6.154363 TCCAAATTACTTGATCCCCATTTGTC 59.846 38.462 0.00 0.00 37.17 3.18
5165 6816 6.155049 CCAAATTACTTGATCCCCATTTGTCT 59.845 38.462 0.00 0.00 37.17 3.41
5166 6817 7.341769 CCAAATTACTTGATCCCCATTTGTCTA 59.658 37.037 0.00 0.00 37.17 2.59
5167 6818 8.408601 CAAATTACTTGATCCCCATTTGTCTAG 58.591 37.037 0.00 0.00 37.17 2.43
5168 6819 6.884472 TTACTTGATCCCCATTTGTCTAGA 57.116 37.500 0.00 0.00 0.00 2.43
5169 6820 5.983333 ACTTGATCCCCATTTGTCTAGAT 57.017 39.130 0.00 0.00 0.00 1.98
5170 6821 8.561536 TTACTTGATCCCCATTTGTCTAGATA 57.438 34.615 0.00 0.00 0.00 1.98
5171 6822 7.639062 ACTTGATCCCCATTTGTCTAGATAT 57.361 36.000 0.00 0.00 0.00 1.63
5172 6823 7.456725 ACTTGATCCCCATTTGTCTAGATATG 58.543 38.462 0.00 0.81 0.00 1.78
5173 6824 6.378661 TGATCCCCATTTGTCTAGATATGG 57.621 41.667 17.94 17.94 37.79 2.74
5174 6825 6.090870 TGATCCCCATTTGTCTAGATATGGA 58.909 40.000 23.00 12.16 39.93 3.41
5175 6826 6.737131 TGATCCCCATTTGTCTAGATATGGAT 59.263 38.462 23.00 15.19 39.93 3.41
5176 6827 6.378661 TCCCCATTTGTCTAGATATGGATG 57.621 41.667 23.00 16.56 39.93 3.51
5177 6828 5.851693 TCCCCATTTGTCTAGATATGGATGT 59.148 40.000 23.00 0.00 39.93 3.06
5178 6829 7.022496 TCCCCATTTGTCTAGATATGGATGTA 58.978 38.462 23.00 9.84 39.93 2.29
5179 6830 7.684186 TCCCCATTTGTCTAGATATGGATGTAT 59.316 37.037 23.00 0.00 39.93 2.29
5180 6831 7.989741 CCCCATTTGTCTAGATATGGATGTATC 59.010 40.741 23.00 0.00 39.93 2.24
5181 6832 8.766476 CCCATTTGTCTAGATATGGATGTATCT 58.234 37.037 23.00 2.43 42.50 1.98
5224 6875 8.359875 AGATACATCCATATCTAGACAAGTGG 57.640 38.462 0.00 1.36 39.63 4.00
5225 6876 5.815233 ACATCCATATCTAGACAAGTGGG 57.185 43.478 0.00 0.00 0.00 4.61
5226 6877 5.467738 ACATCCATATCTAGACAAGTGGGA 58.532 41.667 0.00 0.00 0.00 4.37
5227 6878 5.541868 ACATCCATATCTAGACAAGTGGGAG 59.458 44.000 0.00 1.10 0.00 4.30
5228 6879 5.144159 TCCATATCTAGACAAGTGGGAGT 57.856 43.478 0.00 0.00 0.00 3.85
5229 6880 5.141182 TCCATATCTAGACAAGTGGGAGTC 58.859 45.833 0.00 0.00 35.02 3.36
5230 6881 4.895889 CCATATCTAGACAAGTGGGAGTCA 59.104 45.833 0.00 0.00 37.23 3.41
5231 6882 5.363868 CCATATCTAGACAAGTGGGAGTCAA 59.636 44.000 0.00 0.00 37.23 3.18
5232 6883 6.462207 CCATATCTAGACAAGTGGGAGTCAAG 60.462 46.154 0.00 0.00 37.23 3.02
5233 6884 3.845860 TCTAGACAAGTGGGAGTCAAGT 58.154 45.455 0.00 0.00 37.23 3.16
5234 6885 4.994282 TCTAGACAAGTGGGAGTCAAGTA 58.006 43.478 0.00 0.00 37.23 2.24
5235 6886 5.580998 TCTAGACAAGTGGGAGTCAAGTAT 58.419 41.667 0.00 0.00 37.23 2.12
5236 6887 6.017192 TCTAGACAAGTGGGAGTCAAGTATT 58.983 40.000 0.00 0.00 37.23 1.89
5237 6888 5.568620 AGACAAGTGGGAGTCAAGTATTT 57.431 39.130 0.00 0.00 37.23 1.40
5238 6889 5.941788 AGACAAGTGGGAGTCAAGTATTTT 58.058 37.500 0.00 0.00 37.23 1.82
5239 6890 5.765182 AGACAAGTGGGAGTCAAGTATTTTG 59.235 40.000 0.00 0.00 37.23 2.44
5240 6891 4.827284 ACAAGTGGGAGTCAAGTATTTTGG 59.173 41.667 0.00 0.00 0.00 3.28
5241 6892 4.993705 AGTGGGAGTCAAGTATTTTGGA 57.006 40.909 0.00 0.00 0.00 3.53
5242 6893 5.319043 AGTGGGAGTCAAGTATTTTGGAA 57.681 39.130 0.00 0.00 0.00 3.53
5243 6894 5.070685 AGTGGGAGTCAAGTATTTTGGAAC 58.929 41.667 0.00 0.00 0.00 3.62
5244 6895 4.825085 GTGGGAGTCAAGTATTTTGGAACA 59.175 41.667 0.00 0.00 0.00 3.18
5245 6896 5.048713 GTGGGAGTCAAGTATTTTGGAACAG 60.049 44.000 0.00 0.00 42.39 3.16
5246 6897 5.163141 TGGGAGTCAAGTATTTTGGAACAGA 60.163 40.000 0.00 0.00 42.39 3.41
5247 6898 5.412904 GGGAGTCAAGTATTTTGGAACAGAG 59.587 44.000 0.00 0.00 42.39 3.35
5248 6899 5.412904 GGAGTCAAGTATTTTGGAACAGAGG 59.587 44.000 0.00 0.00 42.39 3.69
5249 6900 5.316987 AGTCAAGTATTTTGGAACAGAGGG 58.683 41.667 0.00 0.00 42.39 4.30
5250 6901 5.073144 AGTCAAGTATTTTGGAACAGAGGGA 59.927 40.000 0.00 0.00 42.39 4.20
5251 6902 5.412904 GTCAAGTATTTTGGAACAGAGGGAG 59.587 44.000 0.00 0.00 42.39 4.30
5337 7391 2.380084 AGCATGCAATCAAGCCAAAG 57.620 45.000 21.98 0.00 37.62 2.77
5343 7397 5.685841 CATGCAATCAAGCCAAAGAAAAAG 58.314 37.500 0.00 0.00 0.00 2.27
5488 7547 9.487790 CCTTTCTAATTTTTGCCTATTGTTCAA 57.512 29.630 0.00 0.00 0.00 2.69
5546 7605 5.995897 GGCCGATATATCAAGTAACAGGTTT 59.004 40.000 13.11 0.00 0.00 3.27
5711 7779 6.283694 TGGATCTCCTAAATGTGAGATTTCG 58.716 40.000 3.75 0.00 45.83 3.46
5893 7961 3.771479 TCTCTGTATGAACCTGATGCTGT 59.229 43.478 0.00 0.00 0.00 4.40
6029 8097 6.590292 ACCAGTTTCTGAATACACTTGATACG 59.410 38.462 0.00 0.00 32.44 3.06
6223 8331 7.225538 AGGTTCTCGCTGATAAATGATAAACAG 59.774 37.037 0.00 0.00 0.00 3.16
6481 8595 0.840617 TGCAACACCAAGTACTCCCA 59.159 50.000 0.00 0.00 0.00 4.37
6796 8983 8.697507 AATGGGAAGTTGGATAGAAATATCAC 57.302 34.615 0.00 0.00 0.00 3.06
6820 9007 9.676195 CACATCTGTCTATTGTCTCTAATGTAG 57.324 37.037 0.00 0.00 0.00 2.74
7025 9483 1.722011 ACGCATAGTCCAACTTTCCG 58.278 50.000 0.00 0.00 0.00 4.30
7033 9491 3.216800 AGTCCAACTTTCCGTTTAACCC 58.783 45.455 0.00 0.00 32.27 4.11
7162 9627 0.238289 GTGTGATTGCGGGAGTTGTG 59.762 55.000 0.00 0.00 0.00 3.33
7186 9651 5.106277 GGTTGGTGTAGCAGTTTTAGGATTC 60.106 44.000 0.00 0.00 0.00 2.52
7263 9728 2.354704 CGTTGGAGCAAGAAGGTATGGA 60.355 50.000 0.00 0.00 0.00 3.41
7307 9777 7.903145 TGTATTCTAACTGAGCAAAGGAGTAA 58.097 34.615 0.00 0.00 0.00 2.24
7312 9782 9.959721 TTCTAACTGAGCAAAGGAGTAATTTAT 57.040 29.630 0.00 0.00 0.00 1.40
7450 9925 3.736094 TCTTGGTCAAGGAGGATATGGT 58.264 45.455 10.39 0.00 38.88 3.55
7453 9928 3.459828 TGGTCAAGGAGGATATGGTTCA 58.540 45.455 0.00 0.00 0.00 3.18
7475 9950 5.964477 TCAGTCTATAAGGTTGGTTCATCCT 59.036 40.000 0.00 0.00 35.33 3.24
7500 9976 8.177119 TGTACATACAGCCTTGAATTTTCTTT 57.823 30.769 0.00 0.00 0.00 2.52
8538 11053 2.223377 CGGTCTCCTGCAACAAGTAAAC 59.777 50.000 0.00 0.00 0.00 2.01
8685 11309 2.933287 TCCGGGCCATCAAGGTGT 60.933 61.111 4.39 0.00 40.61 4.16
8687 11311 2.671070 CGGGCCATCAAGGTGTCT 59.329 61.111 4.39 0.00 40.61 3.41
8927 11554 0.803768 CGTTCCTGAGCTCCGTCATG 60.804 60.000 12.15 0.00 0.00 3.07
8961 11601 5.735892 CGTTGATACAGTTCGATTCGACTTA 59.264 40.000 8.55 5.90 34.89 2.24
9046 11693 5.895636 TTGCATTGGTATTGAACTGTAGG 57.104 39.130 0.00 0.00 0.00 3.18
9089 11745 3.008049 AGGGTGAGTAGCAGGTAAAGTTG 59.992 47.826 0.00 0.00 0.00 3.16
9090 11746 3.244457 GGGTGAGTAGCAGGTAAAGTTGT 60.244 47.826 0.00 0.00 0.00 3.32
9091 11747 4.020839 GGGTGAGTAGCAGGTAAAGTTGTA 60.021 45.833 0.00 0.00 0.00 2.41
9092 11748 5.511888 GGGTGAGTAGCAGGTAAAGTTGTAA 60.512 44.000 0.00 0.00 0.00 2.41
9154 11814 3.620300 CTCCTTGGACGCGCGTACA 62.620 63.158 41.94 41.94 37.14 2.90
9158 11818 1.782807 TTGGACGCGCGTACAATTC 59.217 52.632 46.67 28.93 43.31 2.17
9159 11819 0.944788 TTGGACGCGCGTACAATTCA 60.945 50.000 46.67 31.44 43.31 2.57
9186 11846 1.452145 TTTGGCTTGGACCTTGACGC 61.452 55.000 0.00 0.00 0.00 5.19
9272 11932 0.249911 GGTTGGCACACGAGTTCTCT 60.250 55.000 0.00 0.00 39.29 3.10
9287 11947 0.815095 TCTCTTCCGATGCGTGCTAA 59.185 50.000 0.00 0.00 0.00 3.09
9320 11980 1.332904 CGTTTGCACTCACCGTTCTTC 60.333 52.381 0.00 0.00 0.00 2.87
9354 12015 1.795286 GCTGTTCAAGGACTCGACAAG 59.205 52.381 0.00 0.00 0.00 3.16
9361 12022 3.114558 GGACTCGACAAGTGCAGAG 57.885 57.895 0.00 0.00 45.15 3.35
9381 12042 2.167693 AGGACGATTCTTATGGACGCAA 59.832 45.455 0.00 0.00 0.00 4.85
9397 12058 0.037326 GCAAGACCACGAGATCACCA 60.037 55.000 0.00 0.00 0.00 4.17
9422 12083 1.952263 GCTGCAAGGTGAACTGGAC 59.048 57.895 0.00 0.00 0.00 4.02
9423 12084 0.819259 GCTGCAAGGTGAACTGGACA 60.819 55.000 0.00 0.00 0.00 4.02
9427 12088 1.071471 AAGGTGAACTGGACAGCCG 59.929 57.895 0.00 0.00 36.58 5.52
9431 12092 0.249911 GTGAACTGGACAGCCGTCTT 60.250 55.000 0.00 0.00 42.21 3.01
9432 12093 0.033504 TGAACTGGACAGCCGTCTTC 59.966 55.000 0.00 0.00 42.21 2.87
9441 12102 4.373116 GCCGTCTTCGCTCCCACA 62.373 66.667 0.00 0.00 35.54 4.17
9489 12154 2.103042 CGCTTCAGCTGTGCCCTAC 61.103 63.158 21.81 4.80 39.32 3.18
9516 12181 2.015243 ATGGCTATGGCTGGCATGGT 62.015 55.000 25.02 5.24 46.58 3.55
9539 12204 1.338020 CACCCTGAGCTTGTTTGGTTC 59.662 52.381 0.00 0.00 0.00 3.62
9549 12214 1.504359 TGTTTGGTTCGACGTGATCC 58.496 50.000 0.00 0.24 37.04 3.36
9607 12272 2.915659 AGACAAGTCGGCCCGTGA 60.916 61.111 1.63 0.00 34.09 4.35
9615 12280 0.794473 GTCGGCCCGTGAAAAACTAG 59.206 55.000 1.63 0.00 0.00 2.57
9637 12302 2.029904 GAGCATTTGGTCGCTCGCTC 62.030 60.000 0.00 0.00 44.68 5.03
9638 12303 2.390599 GCATTTGGTCGCTCGCTCA 61.391 57.895 0.00 0.00 0.00 4.26
9639 12304 1.421485 CATTTGGTCGCTCGCTCAC 59.579 57.895 0.00 0.00 0.00 3.51
9641 12306 0.530744 ATTTGGTCGCTCGCTCACTA 59.469 50.000 0.00 0.00 0.00 2.74
9642 12307 0.109272 TTTGGTCGCTCGCTCACTAG 60.109 55.000 0.00 0.00 0.00 2.57
9644 13086 2.409651 GTCGCTCGCTCACTAGGG 59.590 66.667 0.00 0.00 37.02 3.53
9648 13090 0.952280 CGCTCGCTCACTAGGGATTA 59.048 55.000 0.00 0.00 43.11 1.75
9649 13091 1.542030 CGCTCGCTCACTAGGGATTAT 59.458 52.381 0.00 0.00 43.11 1.28
9651 13093 2.558795 GCTCGCTCACTAGGGATTATGA 59.441 50.000 0.00 0.00 43.11 2.15
9653 13095 4.322349 GCTCGCTCACTAGGGATTATGAAT 60.322 45.833 0.00 0.00 43.11 2.57
9658 13100 6.442112 GCTCACTAGGGATTATGAATTTTGC 58.558 40.000 0.00 0.00 0.00 3.68
9695 13890 6.261859 CAGAGATTATGAATCCCGATCTACG 58.738 44.000 0.00 0.00 38.71 3.51
9731 13927 1.210967 AGTTTTCCACGTCACAAGGGA 59.789 47.619 0.00 0.00 0.00 4.20
9732 13928 1.332686 GTTTTCCACGTCACAAGGGAC 59.667 52.381 0.00 0.00 34.42 4.46
9754 13950 2.029964 GAGGAAACCCACGACGCA 59.970 61.111 0.00 0.00 0.00 5.24
9767 13963 2.046892 ACGCAGCGCCTGATTCTT 60.047 55.556 16.61 0.00 32.44 2.52
9778 13974 2.303549 CTGATTCTTCGCCGCCTCCT 62.304 60.000 0.00 0.00 0.00 3.69
9814 14010 1.905354 GCCATAGGCCTGCAATCCC 60.905 63.158 17.99 0.00 44.06 3.85
9845 14041 3.873910 TCCTCCAAGATTCGATCCAAAC 58.126 45.455 0.00 0.00 0.00 2.93
9846 14042 3.519510 TCCTCCAAGATTCGATCCAAACT 59.480 43.478 0.00 0.00 0.00 2.66
9847 14043 3.624861 CCTCCAAGATTCGATCCAAACTG 59.375 47.826 0.00 0.00 0.00 3.16
9848 14044 3.009723 TCCAAGATTCGATCCAAACTGC 58.990 45.455 0.00 0.00 0.00 4.40
9849 14045 2.749076 CCAAGATTCGATCCAAACTGCA 59.251 45.455 0.00 0.00 0.00 4.41
9850 14046 3.191162 CCAAGATTCGATCCAAACTGCAA 59.809 43.478 0.00 0.00 0.00 4.08
9851 14047 4.161333 CAAGATTCGATCCAAACTGCAAC 58.839 43.478 0.00 0.00 0.00 4.17
9852 14048 3.411446 AGATTCGATCCAAACTGCAACA 58.589 40.909 0.00 0.00 0.00 3.33
9853 14049 4.012374 AGATTCGATCCAAACTGCAACAT 58.988 39.130 0.00 0.00 0.00 2.71
9854 14050 3.557577 TTCGATCCAAACTGCAACATG 57.442 42.857 0.00 0.00 0.00 3.21
9855 14051 2.777094 TCGATCCAAACTGCAACATGA 58.223 42.857 0.00 0.00 0.00 3.07
9856 14052 3.346315 TCGATCCAAACTGCAACATGAT 58.654 40.909 0.00 0.00 0.00 2.45
9857 14053 4.512484 TCGATCCAAACTGCAACATGATA 58.488 39.130 0.00 0.00 0.00 2.15
9858 14054 5.125356 TCGATCCAAACTGCAACATGATAT 58.875 37.500 0.00 0.00 0.00 1.63
9859 14055 5.589855 TCGATCCAAACTGCAACATGATATT 59.410 36.000 0.00 0.00 0.00 1.28
9860 14056 5.911280 CGATCCAAACTGCAACATGATATTC 59.089 40.000 0.00 0.00 0.00 1.75
9861 14057 6.238566 CGATCCAAACTGCAACATGATATTCT 60.239 38.462 0.00 0.00 0.00 2.40
9862 14058 6.441093 TCCAAACTGCAACATGATATTCTC 57.559 37.500 0.00 0.00 0.00 2.87
9863 14059 5.357878 TCCAAACTGCAACATGATATTCTCC 59.642 40.000 0.00 0.00 0.00 3.71
9864 14060 5.125900 CCAAACTGCAACATGATATTCTCCA 59.874 40.000 0.00 0.00 0.00 3.86
9865 14061 6.183360 CCAAACTGCAACATGATATTCTCCAT 60.183 38.462 0.00 0.00 0.00 3.41
9931 14127 3.418995 GGGTTTACTCCCAGACTTTTCC 58.581 50.000 0.00 0.00 46.30 3.13
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 40 2.028130 CAGCCTCTAGATCGTCCACTT 58.972 52.381 0.00 0.00 0.00 3.16
98 105 1.226379 CCACGACCATGCGAATTGC 60.226 57.895 0.00 0.00 46.70 3.56
100 107 0.321210 TGACCACGACCATGCGAATT 60.321 50.000 0.00 0.00 34.83 2.17
101 108 0.740868 CTGACCACGACCATGCGAAT 60.741 55.000 0.00 0.00 34.83 3.34
102 109 1.374125 CTGACCACGACCATGCGAA 60.374 57.895 0.00 0.00 34.83 4.70
103 110 2.261361 CTGACCACGACCATGCGA 59.739 61.111 0.00 0.00 34.83 5.10
104 111 3.490759 GCTGACCACGACCATGCG 61.491 66.667 0.00 0.00 37.29 4.73
105 112 2.358615 TGCTGACCACGACCATGC 60.359 61.111 0.00 0.00 0.00 4.06
175 182 3.369366 GCCATTCAATTTTCCGGGATTGT 60.369 43.478 18.88 5.31 35.35 2.71
177 184 3.106827 AGCCATTCAATTTTCCGGGATT 58.893 40.909 0.00 0.00 0.00 3.01
190 197 1.750018 CGGTGCCATCAGCCATTCA 60.750 57.895 0.00 0.00 42.71 2.57
194 201 4.783621 GAGCGGTGCCATCAGCCA 62.784 66.667 0.00 0.00 42.71 4.75
221 228 1.453762 GGACGATGTAGGAGTCGGGG 61.454 65.000 0.00 0.00 41.87 5.73
286 293 6.016777 ACATGGTTGACTTCTTTTGAGCTTAG 60.017 38.462 0.00 0.00 0.00 2.18
287 294 5.827797 ACATGGTTGACTTCTTTTGAGCTTA 59.172 36.000 0.00 0.00 0.00 3.09
288 295 4.646492 ACATGGTTGACTTCTTTTGAGCTT 59.354 37.500 0.00 0.00 0.00 3.74
340 347 0.104855 CGGGGAAAGATCGATGCTCA 59.895 55.000 0.54 0.00 0.00 4.26
341 348 0.105039 ACGGGGAAAGATCGATGCTC 59.895 55.000 0.54 0.00 0.00 4.26
342 349 0.105039 GACGGGGAAAGATCGATGCT 59.895 55.000 0.54 0.00 0.00 3.79
343 350 0.105039 AGACGGGGAAAGATCGATGC 59.895 55.000 0.54 0.00 0.00 3.91
344 351 2.604046 AAGACGGGGAAAGATCGATG 57.396 50.000 0.54 0.00 0.00 3.84
346 353 3.008835 TCTAAGACGGGGAAAGATCGA 57.991 47.619 0.00 0.00 0.00 3.59
347 354 3.795623 TTCTAAGACGGGGAAAGATCG 57.204 47.619 0.00 0.00 0.00 3.69
377 385 0.249322 CGTGTCTTCACCTTGGACGT 60.249 55.000 0.00 0.00 41.09 4.34
386 394 1.202132 TGCTTTTGTGCGTGTCTTCAC 60.202 47.619 0.00 0.00 40.79 3.18
387 395 1.090728 TGCTTTTGTGCGTGTCTTCA 58.909 45.000 0.00 0.00 35.36 3.02
388 396 1.202132 TGTGCTTTTGTGCGTGTCTTC 60.202 47.619 0.00 0.00 35.36 2.87
466 486 8.534333 GGAAATTGTCTTCCCTTTGTTTATTC 57.466 34.615 0.00 0.00 39.26 1.75
478 522 2.095212 GCAGAACGGGAAATTGTCTTCC 60.095 50.000 0.00 0.00 43.69 3.46
512 556 2.966309 GCTTTGACACTTCGCCCCG 61.966 63.158 0.00 0.00 0.00 5.73
514 558 1.166531 ACAGCTTTGACACTTCGCCC 61.167 55.000 0.00 0.00 0.00 6.13
516 560 0.111089 CGACAGCTTTGACACTTCGC 60.111 55.000 0.00 0.00 0.00 4.70
518 562 3.321497 AGATCGACAGCTTTGACACTTC 58.679 45.455 0.00 0.00 0.00 3.01
519 563 3.321497 GAGATCGACAGCTTTGACACTT 58.679 45.455 0.00 0.00 0.00 3.16
536 580 2.586792 GCCAAGCTGGACGGAGAT 59.413 61.111 6.40 0.00 40.96 2.75
564 608 2.542907 CGTTGGTTCGTTGGCTGCT 61.543 57.895 0.00 0.00 0.00 4.24
568 620 2.635338 GACCGTTGGTTCGTTGGC 59.365 61.111 0.00 0.00 35.25 4.52
691 743 0.536260 TGGGTCCGGTTATACAACGG 59.464 55.000 0.00 5.37 35.34 4.44
803 904 0.103572 GGCGACGGGTACATGTACAT 59.896 55.000 31.52 19.18 37.78 2.29
804 905 1.512230 GGCGACGGGTACATGTACA 59.488 57.895 31.52 0.00 37.78 2.90
805 906 4.407551 GGCGACGGGTACATGTAC 57.592 61.111 25.00 25.00 35.40 2.90
842 943 3.655810 CTCGTGCTCCTGGACCTGC 62.656 68.421 0.00 0.00 0.00 4.85
942 1058 2.262915 CTCGGCCGCTTCTGACTT 59.737 61.111 23.51 0.00 0.00 3.01
961 1077 1.153269 GGTGCTCTAGCTTGGCCTC 60.153 63.158 3.32 0.00 42.66 4.70
971 1087 1.043816 GCTATCTGCCTGGTGCTCTA 58.956 55.000 0.00 0.00 42.00 2.43
987 1103 2.386100 CCCCATTGCTCCCTGGCTA 61.386 63.158 0.00 0.00 0.00 3.93
1066 1211 0.599728 GGATCGGTCTGCTGAGCATC 60.600 60.000 20.64 19.15 38.10 3.91
1102 1247 2.240921 GGGAGAAAGAGGGAATCAAGCT 59.759 50.000 0.00 0.00 0.00 3.74
1145 1295 4.636206 AGATGGTTCAGAATTTAGGAACGC 59.364 41.667 10.00 5.95 41.31 4.84
1153 1303 4.326826 TCGAGCAAGATGGTTCAGAATTT 58.673 39.130 0.00 0.00 0.00 1.82
1156 1306 3.401033 TTCGAGCAAGATGGTTCAGAA 57.599 42.857 0.00 0.00 0.00 3.02
1157 1307 3.616956 ATTCGAGCAAGATGGTTCAGA 57.383 42.857 0.00 0.00 0.00 3.27
1159 1309 4.160439 AGTCTATTCGAGCAAGATGGTTCA 59.840 41.667 0.00 0.00 0.00 3.18
1182 1332 3.791320 ACCAAGAGAAGTGGATGGTCTA 58.209 45.455 0.00 0.00 40.23 2.59
1258 1429 5.561919 GCGAATGAGTCATGGTGTTTTTACA 60.562 40.000 6.34 0.00 0.00 2.41
1274 1445 1.869767 GCCAGAACATAGGCGAATGAG 59.130 52.381 9.44 0.00 41.70 2.90
1285 1458 1.973281 CAGCGGTTGGCCAGAACAT 60.973 57.895 5.11 0.00 45.17 2.71
1392 1577 2.771943 TGGAAGAGCTAACGGGATCATT 59.228 45.455 0.00 0.00 0.00 2.57
1399 1584 2.003301 GCTTCTTGGAAGAGCTAACGG 58.997 52.381 10.94 0.00 36.22 4.44
1408 1593 1.593296 GCTGGCTGGCTTCTTGGAAG 61.593 60.000 2.00 3.22 0.00 3.46
1410 1595 2.034687 GCTGGCTGGCTTCTTGGA 59.965 61.111 2.00 0.00 0.00 3.53
1413 1598 3.263259 AGGGCTGGCTGGCTTCTT 61.263 61.111 17.06 0.00 41.48 2.52
1414 1599 3.726144 GAGGGCTGGCTGGCTTCT 61.726 66.667 19.60 9.19 42.68 2.85
1417 1602 4.044439 CTTGAGGGCTGGCTGGCT 62.044 66.667 17.06 4.00 41.48 4.75
1418 1603 4.357279 ACTTGAGGGCTGGCTGGC 62.357 66.667 9.53 9.53 40.96 4.85
1514 1751 1.135199 GGCGAGATGAAACTGGACGTA 60.135 52.381 0.00 0.00 0.00 3.57
1578 1815 2.050350 AGCCGTTAGACCGCTGCTA 61.050 57.895 0.00 0.00 0.00 3.49
1600 1838 2.151202 AGCAAATGAGTAACCACACCG 58.849 47.619 0.00 0.00 0.00 4.94
1721 1963 0.511221 CGATGTTGGTGTTGTCGGTC 59.489 55.000 0.00 0.00 0.00 4.79
1861 2116 1.568025 GTTTCGTCGAACACCCTGC 59.432 57.895 7.29 0.00 0.00 4.85
1971 2612 7.942341 AGTTAAGAGTCCATACAAATTGGTCAA 59.058 33.333 0.00 0.00 35.64 3.18
2117 3009 5.534278 TGAAACAACATTGGAGCAGATACAA 59.466 36.000 0.00 0.00 35.72 2.41
2307 3209 7.099266 TGATGCCAAAAGACCTTATATGTTG 57.901 36.000 0.00 0.00 0.00 3.33
2360 3262 4.841246 ACAAGATCTGTAAGGTTCCTGAGT 59.159 41.667 0.00 0.00 36.10 3.41
2364 3266 5.046950 GTGAGACAAGATCTGTAAGGTTCCT 60.047 44.000 0.00 0.00 38.84 3.36
2600 3672 9.871238 TCAAAGTCCTCAATACAAGAATACTAC 57.129 33.333 0.00 0.00 0.00 2.73
2710 3893 4.640201 GGCTGCCCTTTTTCTTTTTCTTTT 59.360 37.500 7.66 0.00 0.00 2.27
2711 3894 4.199310 GGCTGCCCTTTTTCTTTTTCTTT 58.801 39.130 7.66 0.00 0.00 2.52
2712 3895 3.433598 GGGCTGCCCTTTTTCTTTTTCTT 60.434 43.478 30.42 0.00 41.34 2.52
2713 3896 2.104792 GGGCTGCCCTTTTTCTTTTTCT 59.895 45.455 30.42 0.00 41.34 2.52
2714 3897 2.494059 GGGCTGCCCTTTTTCTTTTTC 58.506 47.619 30.42 0.00 41.34 2.29
2715 3898 1.202639 CGGGCTGCCCTTTTTCTTTTT 60.203 47.619 33.39 0.00 42.67 1.94
2716 3899 0.392706 CGGGCTGCCCTTTTTCTTTT 59.607 50.000 33.39 0.00 42.67 2.27
2717 3900 1.471829 CCGGGCTGCCCTTTTTCTTT 61.472 55.000 33.39 0.00 42.67 2.52
2718 3901 1.908299 CCGGGCTGCCCTTTTTCTT 60.908 57.895 33.39 0.00 42.67 2.52
2719 3902 2.283173 CCGGGCTGCCCTTTTTCT 60.283 61.111 33.39 0.00 42.67 2.52
2720 3903 2.600470 ACCGGGCTGCCCTTTTTC 60.600 61.111 33.39 8.22 42.67 2.29
2721 3904 2.917227 CACCGGGCTGCCCTTTTT 60.917 61.111 33.39 13.23 42.67 1.94
2727 3910 4.794648 TACATGCACCGGGCTGCC 62.795 66.667 11.05 11.05 45.15 4.85
2728 3911 3.204827 CTACATGCACCGGGCTGC 61.205 66.667 6.32 8.50 45.15 5.25
2729 3912 3.204827 GCTACATGCACCGGGCTG 61.205 66.667 6.32 9.21 45.15 4.85
2730 3913 3.391665 GAGCTACATGCACCGGGCT 62.392 63.158 6.32 0.81 45.94 5.19
2731 3914 2.897350 GAGCTACATGCACCGGGC 60.897 66.667 6.32 7.25 45.94 6.13
2732 3915 2.203070 GGAGCTACATGCACCGGG 60.203 66.667 6.32 0.00 42.21 5.73
2759 3942 4.735599 GACCCTTCCCCGGACCCT 62.736 72.222 0.73 0.00 0.00 4.34
2766 3949 3.714001 GTGGTCGGACCCTTCCCC 61.714 72.222 23.81 0.00 38.99 4.81
2767 3950 1.775934 AAAGTGGTCGGACCCTTCCC 61.776 60.000 23.81 7.17 38.99 3.97
2768 3951 0.605589 CAAAGTGGTCGGACCCTTCC 60.606 60.000 23.81 9.51 37.50 3.46
2769 3952 0.605589 CCAAAGTGGTCGGACCCTTC 60.606 60.000 23.81 13.97 37.50 3.46
2770 3953 1.454539 CCAAAGTGGTCGGACCCTT 59.545 57.895 23.81 21.08 37.50 3.95
2771 3954 2.526046 CCCAAAGTGGTCGGACCCT 61.526 63.158 23.81 16.82 37.50 4.34
2772 3955 2.033602 CCCAAAGTGGTCGGACCC 59.966 66.667 23.81 14.91 37.50 4.46
2773 3956 1.302271 GACCCAAAGTGGTCGGACC 60.302 63.158 20.36 20.36 44.98 4.46
2774 3957 4.373771 GACCCAAAGTGGTCGGAC 57.626 61.111 0.00 0.00 44.98 4.79
2779 3962 3.945640 ACAAGTTAGACCCAAAGTGGT 57.054 42.857 0.00 0.00 42.79 4.16
2780 3963 6.894339 ATTTACAAGTTAGACCCAAAGTGG 57.106 37.500 0.00 0.00 37.25 4.00
2866 4053 0.823356 TGCTCAAGTTTGGCCAGGTC 60.823 55.000 5.11 0.11 0.00 3.85
2898 4346 7.379059 AAGAAAAATGGGGTCTTCAGAATTT 57.621 32.000 0.00 0.00 0.00 1.82
2945 4408 4.243270 ACACGTTAGACATGAAGCTAACC 58.757 43.478 20.95 11.11 42.01 2.85
2953 4418 6.926826 ACAGAAACATTACACGTTAGACATGA 59.073 34.615 0.00 0.00 0.00 3.07
2991 4458 2.693591 GCCAGCACTGTCTATGTACCTA 59.306 50.000 0.00 0.00 0.00 3.08
3223 4702 2.251409 ATGGCAGAGATCAATGACGG 57.749 50.000 0.00 0.00 0.00 4.79
3237 4716 6.889722 AGGCTAAACAAAGAATTACTATGGCA 59.110 34.615 0.00 0.00 0.00 4.92
3293 4773 9.520204 AGATAAAAATGTTCTTGAAACTGTGTG 57.480 29.630 0.00 0.00 0.00 3.82
3491 4988 7.551035 ACATCTGACTTCAAATGAGCTATTC 57.449 36.000 0.00 0.00 0.00 1.75
3561 5063 7.540400 CGAAATTAGCAACCATCACAATTAACA 59.460 33.333 0.00 0.00 0.00 2.41
3593 5095 4.620982 TCAATGCTACTGATACCATCACG 58.379 43.478 0.00 0.00 35.06 4.35
3812 5431 3.244875 TGGTGCAACAGGACTGTAATGAT 60.245 43.478 0.00 0.00 44.13 2.45
3877 5496 1.495148 TCTCTAGGATCGCTGGAAGGA 59.505 52.381 0.00 0.00 0.00 3.36
3885 5504 6.793492 AATAGCAAAATTCTCTAGGATCGC 57.207 37.500 0.00 0.00 0.00 4.58
3941 5560 4.508551 TCTTCATATCCAGGTGTGCAAT 57.491 40.909 0.00 0.00 0.00 3.56
4153 5773 3.885724 TCGTCTGCACCATAGAAATCA 57.114 42.857 0.00 0.00 0.00 2.57
4288 5908 7.230849 AGCTTGGTGAATTACATCAAAATCA 57.769 32.000 0.00 0.00 46.96 2.57
4476 6104 3.936564 AGGCTTATAGCTCTGCATTAGC 58.063 45.455 12.14 12.14 41.99 3.09
4934 6579 8.535690 AAGTTTCAGAACATAGTACTTACAGC 57.464 34.615 0.00 0.00 38.26 4.40
4973 6618 0.482446 TGTTGGGCTGGATTTGGTCT 59.518 50.000 0.00 0.00 0.00 3.85
5029 6676 7.865706 ATTTCCATACACTACAAGCCTAAAG 57.134 36.000 0.00 0.00 0.00 1.85
5090 6741 5.914033 TGAAGTACCAAAATATCCTCTCGG 58.086 41.667 0.00 0.00 0.00 4.63
5129 6780 3.629142 AGTAATTTGGAACGGAGGGAG 57.371 47.619 0.00 0.00 0.00 4.30
5130 6781 3.328343 TCAAGTAATTTGGAACGGAGGGA 59.672 43.478 0.00 0.00 37.39 4.20
5131 6782 3.681593 TCAAGTAATTTGGAACGGAGGG 58.318 45.455 0.00 0.00 37.39 4.30
5132 6783 4.335594 GGATCAAGTAATTTGGAACGGAGG 59.664 45.833 0.00 0.00 37.39 4.30
5133 6784 4.335594 GGGATCAAGTAATTTGGAACGGAG 59.664 45.833 0.00 0.00 37.39 4.63
5134 6785 4.266714 GGGATCAAGTAATTTGGAACGGA 58.733 43.478 0.00 0.00 37.39 4.69
5135 6786 3.380320 GGGGATCAAGTAATTTGGAACGG 59.620 47.826 0.00 0.00 37.39 4.44
5136 6787 4.013728 TGGGGATCAAGTAATTTGGAACG 58.986 43.478 0.00 0.00 37.39 3.95
5137 6788 6.544928 AATGGGGATCAAGTAATTTGGAAC 57.455 37.500 0.00 0.00 37.39 3.62
5138 6789 6.500049 ACAAATGGGGATCAAGTAATTTGGAA 59.500 34.615 16.29 0.00 38.63 3.53
5139 6790 6.022315 ACAAATGGGGATCAAGTAATTTGGA 58.978 36.000 16.29 0.00 38.63 3.53
5140 6791 6.155049 AGACAAATGGGGATCAAGTAATTTGG 59.845 38.462 16.29 5.69 38.63 3.28
5141 6792 7.174107 AGACAAATGGGGATCAAGTAATTTG 57.826 36.000 12.91 12.91 39.65 2.32
5142 6793 8.336235 TCTAGACAAATGGGGATCAAGTAATTT 58.664 33.333 0.00 0.00 0.00 1.82
5143 6794 7.872138 TCTAGACAAATGGGGATCAAGTAATT 58.128 34.615 0.00 0.00 0.00 1.40
5144 6795 7.451731 TCTAGACAAATGGGGATCAAGTAAT 57.548 36.000 0.00 0.00 0.00 1.89
5145 6796 6.884472 TCTAGACAAATGGGGATCAAGTAA 57.116 37.500 0.00 0.00 0.00 2.24
5146 6797 8.597167 CATATCTAGACAAATGGGGATCAAGTA 58.403 37.037 0.00 0.00 0.00 2.24
5147 6798 5.983333 ATCTAGACAAATGGGGATCAAGT 57.017 39.130 0.00 0.00 0.00 3.16
5148 6799 6.883217 CCATATCTAGACAAATGGGGATCAAG 59.117 42.308 17.34 0.00 36.12 3.02
5149 6800 6.562223 TCCATATCTAGACAAATGGGGATCAA 59.438 38.462 21.78 6.89 39.51 2.57
5150 6801 6.090870 TCCATATCTAGACAAATGGGGATCA 58.909 40.000 21.78 7.40 39.51 2.92
5151 6802 6.627087 TCCATATCTAGACAAATGGGGATC 57.373 41.667 21.78 0.00 39.51 3.36
5152 6803 6.506770 ACATCCATATCTAGACAAATGGGGAT 59.493 38.462 21.78 13.12 39.51 3.85
5153 6804 5.851693 ACATCCATATCTAGACAAATGGGGA 59.148 40.000 21.78 11.82 39.51 4.81
5154 6805 6.131972 ACATCCATATCTAGACAAATGGGG 57.868 41.667 21.78 17.94 39.51 4.96
5155 6806 8.766476 AGATACATCCATATCTAGACAAATGGG 58.234 37.037 21.78 13.69 39.63 4.00
5198 6849 9.467796 CCACTTGTCTAGATATGGATGTATCTA 57.532 37.037 3.62 4.21 40.79 1.98
5199 6850 7.398618 CCCACTTGTCTAGATATGGATGTATCT 59.601 40.741 9.96 2.43 42.50 1.98
5200 6851 7.397476 TCCCACTTGTCTAGATATGGATGTATC 59.603 40.741 9.96 0.00 0.00 2.24
5201 6852 7.248976 TCCCACTTGTCTAGATATGGATGTAT 58.751 38.462 9.96 0.00 0.00 2.29
5202 6853 6.620429 TCCCACTTGTCTAGATATGGATGTA 58.380 40.000 9.96 0.00 0.00 2.29
5203 6854 5.467738 TCCCACTTGTCTAGATATGGATGT 58.532 41.667 9.96 0.00 0.00 3.06
5204 6855 5.541868 ACTCCCACTTGTCTAGATATGGATG 59.458 44.000 9.96 5.63 0.00 3.51
5205 6856 5.721225 ACTCCCACTTGTCTAGATATGGAT 58.279 41.667 9.96 0.00 0.00 3.41
5206 6857 5.141182 GACTCCCACTTGTCTAGATATGGA 58.859 45.833 9.96 4.67 0.00 3.41
5207 6858 4.895889 TGACTCCCACTTGTCTAGATATGG 59.104 45.833 0.00 0.00 34.57 2.74
5208 6859 6.097554 ACTTGACTCCCACTTGTCTAGATATG 59.902 42.308 10.42 0.00 38.64 1.78
5209 6860 6.198639 ACTTGACTCCCACTTGTCTAGATAT 58.801 40.000 10.42 0.00 38.64 1.63
5210 6861 5.580998 ACTTGACTCCCACTTGTCTAGATA 58.419 41.667 10.42 0.00 38.64 1.98
5211 6862 4.421131 ACTTGACTCCCACTTGTCTAGAT 58.579 43.478 10.42 0.00 38.64 1.98
5212 6863 3.845860 ACTTGACTCCCACTTGTCTAGA 58.154 45.455 10.42 0.00 38.64 2.43
5213 6864 5.923733 ATACTTGACTCCCACTTGTCTAG 57.076 43.478 0.00 0.00 40.20 2.43
5214 6865 6.681729 AAATACTTGACTCCCACTTGTCTA 57.318 37.500 0.00 0.00 34.57 2.59
5215 6866 5.568620 AAATACTTGACTCCCACTTGTCT 57.431 39.130 0.00 0.00 34.57 3.41
5216 6867 5.048713 CCAAAATACTTGACTCCCACTTGTC 60.049 44.000 0.00 0.00 0.00 3.18
5217 6868 4.827284 CCAAAATACTTGACTCCCACTTGT 59.173 41.667 0.00 0.00 0.00 3.16
5218 6869 5.070001 TCCAAAATACTTGACTCCCACTTG 58.930 41.667 0.00 0.00 0.00 3.16
5219 6870 5.319043 TCCAAAATACTTGACTCCCACTT 57.681 39.130 0.00 0.00 0.00 3.16
5220 6871 4.993705 TCCAAAATACTTGACTCCCACT 57.006 40.909 0.00 0.00 0.00 4.00
5221 6872 4.825085 TGTTCCAAAATACTTGACTCCCAC 59.175 41.667 0.00 0.00 0.00 4.61
5222 6873 5.055265 TGTTCCAAAATACTTGACTCCCA 57.945 39.130 0.00 0.00 0.00 4.37
5223 6874 5.313712 TCTGTTCCAAAATACTTGACTCCC 58.686 41.667 0.00 0.00 0.00 4.30
5224 6875 5.412904 CCTCTGTTCCAAAATACTTGACTCC 59.587 44.000 0.00 0.00 0.00 3.85
5225 6876 5.412904 CCCTCTGTTCCAAAATACTTGACTC 59.587 44.000 0.00 0.00 0.00 3.36
5226 6877 5.073144 TCCCTCTGTTCCAAAATACTTGACT 59.927 40.000 0.00 0.00 0.00 3.41
5227 6878 5.313712 TCCCTCTGTTCCAAAATACTTGAC 58.686 41.667 0.00 0.00 0.00 3.18
5228 6879 5.073144 ACTCCCTCTGTTCCAAAATACTTGA 59.927 40.000 0.00 0.00 0.00 3.02
5229 6880 5.316987 ACTCCCTCTGTTCCAAAATACTTG 58.683 41.667 0.00 0.00 0.00 3.16
5230 6881 5.584551 ACTCCCTCTGTTCCAAAATACTT 57.415 39.130 0.00 0.00 0.00 2.24
5231 6882 6.893020 ATACTCCCTCTGTTCCAAAATACT 57.107 37.500 0.00 0.00 0.00 2.12
5232 6883 8.483758 TCTTATACTCCCTCTGTTCCAAAATAC 58.516 37.037 0.00 0.00 0.00 1.89
5233 6884 8.618240 TCTTATACTCCCTCTGTTCCAAAATA 57.382 34.615 0.00 0.00 0.00 1.40
5234 6885 7.510675 TCTTATACTCCCTCTGTTCCAAAAT 57.489 36.000 0.00 0.00 0.00 1.82
5235 6886 6.945636 TCTTATACTCCCTCTGTTCCAAAA 57.054 37.500 0.00 0.00 0.00 2.44
5236 6887 7.510675 AATCTTATACTCCCTCTGTTCCAAA 57.489 36.000 0.00 0.00 0.00 3.28
5237 6888 8.798975 ATAATCTTATACTCCCTCTGTTCCAA 57.201 34.615 0.00 0.00 0.00 3.53
5238 6889 8.798975 AATAATCTTATACTCCCTCTGTTCCA 57.201 34.615 0.00 0.00 0.00 3.53
5546 7605 7.625498 TGAGGTGGGTATCATAATATGAACA 57.375 36.000 7.07 2.28 43.50 3.18
5628 7696 2.147958 CGTAGGTAAGGCACTGCAAAA 58.852 47.619 2.82 0.00 40.86 2.44
5711 7779 6.183360 GCATAGACTTAAAATTGCAAAAGGCC 60.183 38.462 10.24 0.00 43.89 5.19
5893 7961 0.978907 TGATGCAGCTCCAAGAGTGA 59.021 50.000 2.53 0.00 31.39 3.41
6029 8097 1.200020 CTTGCATTCCGGAACAGTTCC 59.800 52.381 21.56 21.18 46.62 3.62
6223 8331 7.344095 TGACTGGGTTATAAGCTAAGAGTAC 57.656 40.000 18.52 0.00 0.00 2.73
6983 9440 7.201661 GCGTAAACTGGTTGGAATATTACATCA 60.202 37.037 0.00 2.93 0.00 3.07
7025 9483 8.570068 TCAGTATATTTCAAGTGGGGTTAAAC 57.430 34.615 0.00 0.00 0.00 2.01
7162 9627 3.746940 TCCTAAAACTGCTACACCAACC 58.253 45.455 0.00 0.00 0.00 3.77
7186 9651 2.865343 AGATTCCGGCAAGTACTACG 57.135 50.000 0.00 1.45 0.00 3.51
7263 9728 2.099405 CAATTTGGTCCTGGGCGTATT 58.901 47.619 0.00 0.00 0.00 1.89
7268 9733 3.365472 AGAATACAATTTGGTCCTGGGC 58.635 45.455 0.78 0.00 0.00 5.36
7270 9735 6.884295 TCAGTTAGAATACAATTTGGTCCTGG 59.116 38.462 0.78 0.00 0.00 4.45
7271 9736 7.414540 GCTCAGTTAGAATACAATTTGGTCCTG 60.415 40.741 0.78 0.00 0.00 3.86
7312 9782 8.584157 AGGCATCACAAAAAGATATAACAAACA 58.416 29.630 0.00 0.00 0.00 2.83
7336 9811 3.533606 ATACTGTACAGCTCTGCAAGG 57.466 47.619 22.90 0.00 0.00 3.61
7450 9925 6.443849 AGGATGAACCAACCTTATAGACTGAA 59.556 38.462 0.00 0.00 42.04 3.02
7453 9928 5.726793 ACAGGATGAACCAACCTTATAGACT 59.273 40.000 0.00 0.00 39.69 3.24
7475 9950 7.759489 AAGAAAATTCAAGGCTGTATGTACA 57.241 32.000 0.00 0.00 34.56 2.90
7500 9976 6.596497 AGTTACTTCCAGAACGAAAACTTTCA 59.404 34.615 3.28 0.00 37.01 2.69
8538 11053 5.534654 TCAGGAAATCAGTTTACCCTTTGTG 59.465 40.000 0.00 0.00 0.00 3.33
8685 11309 2.288778 CCTGGGTGCAGAGCAGAGA 61.289 63.158 0.00 0.00 40.08 3.10
8687 11311 3.324930 CCCTGGGTGCAGAGCAGA 61.325 66.667 3.97 0.00 40.08 4.26
8834 11461 0.170339 CACTGACGTCGGTGCTCATA 59.830 55.000 36.95 5.45 45.06 2.15
8961 11601 4.910195 TCTCAGCAAATCTGTACCACAAT 58.090 39.130 0.00 0.00 43.32 2.71
9027 11674 6.173339 ACAGTCCTACAGTTCAATACCAATG 58.827 40.000 0.00 0.00 0.00 2.82
9028 11675 6.374417 ACAGTCCTACAGTTCAATACCAAT 57.626 37.500 0.00 0.00 0.00 3.16
9029 11676 5.818678 ACAGTCCTACAGTTCAATACCAA 57.181 39.130 0.00 0.00 0.00 3.67
9030 11677 5.776208 TGTACAGTCCTACAGTTCAATACCA 59.224 40.000 0.00 0.00 0.00 3.25
9031 11678 6.276832 TGTACAGTCCTACAGTTCAATACC 57.723 41.667 0.00 0.00 0.00 2.73
9040 11687 2.231478 CCACCACTGTACAGTCCTACAG 59.769 54.545 25.63 13.06 46.32 2.74
9041 11688 2.244695 CCACCACTGTACAGTCCTACA 58.755 52.381 25.63 0.00 40.20 2.74
9042 11689 2.245582 ACCACCACTGTACAGTCCTAC 58.754 52.381 25.63 0.00 40.20 3.18
9043 11690 2.688902 ACCACCACTGTACAGTCCTA 57.311 50.000 25.63 0.00 40.20 2.94
9044 11691 2.688902 TACCACCACTGTACAGTCCT 57.311 50.000 25.63 10.64 40.20 3.85
9045 11692 2.565834 ACATACCACCACTGTACAGTCC 59.434 50.000 25.63 0.00 40.20 3.85
9046 11693 3.955650 ACATACCACCACTGTACAGTC 57.044 47.619 25.63 0.00 40.20 3.51
9089 11745 7.182761 CCTACACACGTACTACACATACTTAC 58.817 42.308 0.00 0.00 0.00 2.34
9090 11746 6.183360 GCCTACACACGTACTACACATACTTA 60.183 42.308 0.00 0.00 0.00 2.24
9091 11747 5.392380 GCCTACACACGTACTACACATACTT 60.392 44.000 0.00 0.00 0.00 2.24
9092 11748 4.095483 GCCTACACACGTACTACACATACT 59.905 45.833 0.00 0.00 0.00 2.12
9154 11814 6.654582 GGTCCAAGCCAAAATTATTGTGAATT 59.345 34.615 0.00 0.00 0.00 2.17
9158 11818 5.151297 AGGTCCAAGCCAAAATTATTGTG 57.849 39.130 0.00 0.00 0.00 3.33
9159 11819 5.306678 TCAAGGTCCAAGCCAAAATTATTGT 59.693 36.000 0.00 0.00 0.00 2.71
9186 11846 0.463295 ATGAACTGGAGATGGCTGCG 60.463 55.000 0.00 0.00 34.84 5.18
9230 11890 1.000521 CCATGAGCTTGCCCTTCCA 60.001 57.895 0.00 0.00 0.00 3.53
9272 11932 2.164663 CGCTTAGCACGCATCGGAA 61.165 57.895 4.70 0.00 0.00 4.30
9287 11947 1.661197 CAAACGTTGGCATTGCGCT 60.661 52.632 9.73 0.00 41.91 5.92
9292 11952 0.743688 TGAGTGCAAACGTTGGCATT 59.256 45.000 31.66 27.81 42.75 3.56
9329 11989 3.312697 GTCGAGTCCTTGAACAGCTTTTT 59.687 43.478 0.00 0.00 0.00 1.94
9354 12015 3.126831 CCATAAGAATCGTCCTCTGCAC 58.873 50.000 0.00 0.00 0.00 4.57
9361 12022 2.218953 TGCGTCCATAAGAATCGTCC 57.781 50.000 0.00 0.00 0.00 4.79
9381 12042 1.468985 CTCTGGTGATCTCGTGGTCT 58.531 55.000 0.00 0.00 0.00 3.85
9385 12046 0.743688 CTCCCTCTGGTGATCTCGTG 59.256 60.000 0.00 0.00 0.00 4.35
9397 12058 1.130054 TTCACCTTGCAGCTCCCTCT 61.130 55.000 0.00 0.00 0.00 3.69
9413 12074 0.033504 GAAGACGGCTGTCCAGTTCA 59.966 55.000 22.17 0.00 46.74 3.18
9422 12083 4.069232 TGGGAGCGAAGACGGCTG 62.069 66.667 0.00 0.00 40.15 4.85
9423 12084 4.070552 GTGGGAGCGAAGACGGCT 62.071 66.667 0.00 0.00 40.15 5.52
9427 12088 2.027625 CCGTTGTGGGAGCGAAGAC 61.028 63.158 0.00 0.00 0.00 3.01
9516 12181 1.108727 CAAACAAGCTCAGGGTGGCA 61.109 55.000 0.00 0.00 0.00 4.92
9588 12253 3.692406 ACGGGCCGACTTGTCTCC 61.692 66.667 35.78 0.74 0.00 3.71
9607 12272 3.832490 GACCAAATGCTCCCCTAGTTTTT 59.168 43.478 0.00 0.00 0.00 1.94
9615 12280 2.044946 AGCGACCAAATGCTCCCC 60.045 61.111 0.00 0.00 36.53 4.81
9637 12302 7.572523 TGAGCAAAATTCATAATCCCTAGTG 57.427 36.000 0.00 0.00 0.00 2.74
9638 12303 8.593945 TTTGAGCAAAATTCATAATCCCTAGT 57.406 30.769 0.00 0.00 0.00 2.57
9639 12304 9.874205 TTTTTGAGCAAAATTCATAATCCCTAG 57.126 29.630 8.98 0.00 39.69 3.02
9666 13108 4.412199 TCGGGATTCATAATCTCTGGGTTT 59.588 41.667 0.00 0.00 36.19 3.27
9667 13109 3.973973 TCGGGATTCATAATCTCTGGGTT 59.026 43.478 0.00 0.00 36.19 4.11
9668 13110 3.587498 TCGGGATTCATAATCTCTGGGT 58.413 45.455 0.00 0.00 36.19 4.51
9674 13869 5.163744 CGACGTAGATCGGGATTCATAATCT 60.164 44.000 0.00 0.00 44.69 2.40
9682 13877 2.223665 GGAAACGACGTAGATCGGGATT 60.224 50.000 0.00 0.00 46.56 3.01
9683 13878 1.336125 GGAAACGACGTAGATCGGGAT 59.664 52.381 0.00 0.00 46.56 3.85
9778 13974 1.371183 CAGAGGGTTGTCGCTGGAA 59.629 57.895 0.00 0.00 36.98 3.53
9814 14010 1.958288 TCTTGGAGGAAGGAGAAGGG 58.042 55.000 0.00 0.00 31.85 3.95
9845 14041 4.825634 ACCATGGAGAATATCATGTTGCAG 59.174 41.667 21.47 0.00 39.12 4.41
9846 14042 4.795469 ACCATGGAGAATATCATGTTGCA 58.205 39.130 21.47 0.00 39.12 4.08
9847 14043 5.779529 AACCATGGAGAATATCATGTTGC 57.220 39.130 21.47 0.00 39.12 4.17
9848 14044 8.562892 GTCTAAACCATGGAGAATATCATGTTG 58.437 37.037 21.47 0.00 39.12 3.33
9849 14045 7.442364 CGTCTAAACCATGGAGAATATCATGTT 59.558 37.037 21.47 0.00 39.12 2.71
9850 14046 6.931281 CGTCTAAACCATGGAGAATATCATGT 59.069 38.462 21.47 0.00 39.12 3.21
9851 14047 6.369890 CCGTCTAAACCATGGAGAATATCATG 59.630 42.308 21.47 0.00 40.12 3.07
9852 14048 6.467677 CCGTCTAAACCATGGAGAATATCAT 58.532 40.000 21.47 0.00 0.00 2.45
9853 14049 5.221641 CCCGTCTAAACCATGGAGAATATCA 60.222 44.000 21.47 0.00 0.00 2.15
9854 14050 5.238583 CCCGTCTAAACCATGGAGAATATC 58.761 45.833 21.47 2.27 0.00 1.63
9855 14051 4.041691 CCCCGTCTAAACCATGGAGAATAT 59.958 45.833 21.47 0.00 0.00 1.28
9856 14052 3.389983 CCCCGTCTAAACCATGGAGAATA 59.610 47.826 21.47 4.65 0.00 1.75
9857 14053 2.172717 CCCCGTCTAAACCATGGAGAAT 59.827 50.000 21.47 3.61 0.00 2.40
9858 14054 1.557832 CCCCGTCTAAACCATGGAGAA 59.442 52.381 21.47 1.30 0.00 2.87
9859 14055 1.200519 CCCCGTCTAAACCATGGAGA 58.799 55.000 21.47 8.31 0.00 3.71
9860 14056 1.200519 TCCCCGTCTAAACCATGGAG 58.799 55.000 21.47 5.55 0.00 3.86
9861 14057 1.887797 ATCCCCGTCTAAACCATGGA 58.112 50.000 21.47 0.00 0.00 3.41
9862 14058 2.224450 GGTATCCCCGTCTAAACCATGG 60.224 54.545 11.19 11.19 0.00 3.66
9863 14059 2.436542 TGGTATCCCCGTCTAAACCATG 59.563 50.000 0.00 0.00 32.24 3.66
9864 14060 2.766736 TGGTATCCCCGTCTAAACCAT 58.233 47.619 0.00 0.00 32.24 3.55
9865 14061 2.250921 TGGTATCCCCGTCTAAACCA 57.749 50.000 0.00 0.00 34.73 3.67


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.