Multiple sequence alignment - TraesCS2B01G436700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G436700 chr2B 100.000 2514 0 0 1 2514 628156056 628158569 0.000000e+00 4643.0
1 TraesCS2B01G436700 chr2B 85.015 654 57 16 928 1569 225691566 225692190 5.900000e-176 627.0
2 TraesCS2B01G436700 chr2B 95.821 335 14 0 1035 1369 627317730 627318064 2.200000e-150 542.0
3 TraesCS2B01G436700 chr2B 84.837 521 68 5 2001 2514 625260685 625260169 4.800000e-142 514.0
4 TraesCS2B01G436700 chr2B 91.111 45 3 1 37 80 623396974 623397018 2.700000e-05 60.2
5 TraesCS2B01G436700 chr2D 83.747 1692 127 75 894 2514 528998726 529000340 0.000000e+00 1465.0
6 TraesCS2B01G436700 chr2D 89.123 616 34 12 786 1368 527648449 527647834 0.000000e+00 736.0
7 TraesCS2B01G436700 chr2D 85.388 657 60 14 928 1572 171444967 171444335 0.000000e+00 649.0
8 TraesCS2B01G436700 chr2D 86.882 587 42 22 812 1372 527684518 527683941 2.120000e-175 625.0
9 TraesCS2B01G436700 chr2D 88.000 450 36 12 450 889 528998000 528998441 1.330000e-142 516.0
10 TraesCS2B01G436700 chr2D 89.881 168 11 4 285 451 528997793 528997955 7.050000e-51 211.0
11 TraesCS2B01G436700 chr2D 89.247 93 9 1 170 261 637526086 637525994 5.680000e-22 115.0
12 TraesCS2B01G436700 chr2A 82.413 1558 122 70 285 1768 673451406 673452885 0.000000e+00 1219.0
13 TraesCS2B01G436700 chr2A 87.931 696 50 14 1834 2514 673452914 673453590 0.000000e+00 789.0
14 TraesCS2B01G436700 chr2A 88.934 488 39 5 890 1372 672645262 672644785 2.790000e-164 588.0
15 TraesCS2B01G436700 chr2A 84.006 644 65 20 943 1580 178170939 178171550 3.600000e-163 584.0
16 TraesCS2B01G436700 chr2A 96.951 328 10 0 1040 1367 673419982 673420309 3.650000e-153 551.0
17 TraesCS2B01G436700 chr2A 73.333 210 46 8 46 250 17137567 17137771 4.490000e-08 69.4
18 TraesCS2B01G436700 chr7D 83.729 1094 104 44 1040 2092 134467053 134465993 0.000000e+00 966.0
19 TraesCS2B01G436700 chr7A 82.332 1098 109 48 1035 2092 133627452 133626400 0.000000e+00 874.0
20 TraesCS2B01G436700 chr3D 86.614 254 34 0 8 261 2137757 2137504 5.290000e-72 281.0
21 TraesCS2B01G436700 chr6D 74.886 219 46 7 37 250 285745697 285745911 9.580000e-15 91.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G436700 chr2B 628156056 628158569 2513 False 4643.000000 4643 100.000000 1 2514 1 chr2B.!!$F4 2513
1 TraesCS2B01G436700 chr2B 225691566 225692190 624 False 627.000000 627 85.015000 928 1569 1 chr2B.!!$F1 641
2 TraesCS2B01G436700 chr2B 625260169 625260685 516 True 514.000000 514 84.837000 2001 2514 1 chr2B.!!$R1 513
3 TraesCS2B01G436700 chr2D 527647834 527648449 615 True 736.000000 736 89.123000 786 1368 1 chr2D.!!$R2 582
4 TraesCS2B01G436700 chr2D 528997793 529000340 2547 False 730.666667 1465 87.209333 285 2514 3 chr2D.!!$F1 2229
5 TraesCS2B01G436700 chr2D 171444335 171444967 632 True 649.000000 649 85.388000 928 1572 1 chr2D.!!$R1 644
6 TraesCS2B01G436700 chr2D 527683941 527684518 577 True 625.000000 625 86.882000 812 1372 1 chr2D.!!$R3 560
7 TraesCS2B01G436700 chr2A 673451406 673453590 2184 False 1004.000000 1219 85.172000 285 2514 2 chr2A.!!$F4 2229
8 TraesCS2B01G436700 chr2A 178170939 178171550 611 False 584.000000 584 84.006000 943 1580 1 chr2A.!!$F2 637
9 TraesCS2B01G436700 chr7D 134465993 134467053 1060 True 966.000000 966 83.729000 1040 2092 1 chr7D.!!$R1 1052
10 TraesCS2B01G436700 chr7A 133626400 133627452 1052 True 874.000000 874 82.332000 1035 2092 1 chr7A.!!$R1 1057

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
146 147 0.038618 TCGCTCGCTTCTAAAGTGCA 60.039 50.0 0.0 0.0 38.86 4.57 F
147 148 0.093705 CGCTCGCTTCTAAAGTGCAC 59.906 55.0 9.4 9.4 38.86 4.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1421 1797 0.325602 GTAAACCCCATCCACCACGA 59.674 55.0 0.00 0.0 0.0 4.35 R
1625 2055 0.379669 GTCCAGATTGCAATGCTCGG 59.620 55.0 18.59 15.5 0.0 4.63 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 4.571372 AAAACGGGCGAAAATCTAAACA 57.429 36.364 0.00 0.00 0.00 2.83
25 26 4.571372 AAACGGGCGAAAATCTAAACAA 57.429 36.364 0.00 0.00 0.00 2.83
26 27 3.547649 ACGGGCGAAAATCTAAACAAC 57.452 42.857 0.00 0.00 0.00 3.32
27 28 2.879646 ACGGGCGAAAATCTAAACAACA 59.120 40.909 0.00 0.00 0.00 3.33
28 29 3.315749 ACGGGCGAAAATCTAAACAACAA 59.684 39.130 0.00 0.00 0.00 2.83
29 30 3.911964 CGGGCGAAAATCTAAACAACAAG 59.088 43.478 0.00 0.00 0.00 3.16
30 31 4.319911 CGGGCGAAAATCTAAACAACAAGA 60.320 41.667 0.00 0.00 0.00 3.02
31 32 5.525199 GGGCGAAAATCTAAACAACAAGAA 58.475 37.500 0.00 0.00 0.00 2.52
32 33 5.629435 GGGCGAAAATCTAAACAACAAGAAG 59.371 40.000 0.00 0.00 0.00 2.85
33 34 5.117135 GGCGAAAATCTAAACAACAAGAAGC 59.883 40.000 0.00 0.00 0.00 3.86
34 35 5.117135 GCGAAAATCTAAACAACAAGAAGCC 59.883 40.000 0.00 0.00 0.00 4.35
35 36 6.205784 CGAAAATCTAAACAACAAGAAGCCA 58.794 36.000 0.00 0.00 0.00 4.75
36 37 6.142320 CGAAAATCTAAACAACAAGAAGCCAC 59.858 38.462 0.00 0.00 0.00 5.01
37 38 4.749245 ATCTAAACAACAAGAAGCCACG 57.251 40.909 0.00 0.00 0.00 4.94
38 39 2.289547 TCTAAACAACAAGAAGCCACGC 59.710 45.455 0.00 0.00 0.00 5.34
39 40 0.102300 AAACAACAAGAAGCCACGCC 59.898 50.000 0.00 0.00 0.00 5.68
40 41 0.751643 AACAACAAGAAGCCACGCCT 60.752 50.000 0.00 0.00 0.00 5.52
41 42 0.107831 ACAACAAGAAGCCACGCCTA 59.892 50.000 0.00 0.00 0.00 3.93
42 43 1.234821 CAACAAGAAGCCACGCCTAA 58.765 50.000 0.00 0.00 0.00 2.69
43 44 1.069227 CAACAAGAAGCCACGCCTAAC 60.069 52.381 0.00 0.00 0.00 2.34
44 45 0.107831 ACAAGAAGCCACGCCTAACA 59.892 50.000 0.00 0.00 0.00 2.41
45 46 1.234821 CAAGAAGCCACGCCTAACAA 58.765 50.000 0.00 0.00 0.00 2.83
46 47 1.069227 CAAGAAGCCACGCCTAACAAC 60.069 52.381 0.00 0.00 0.00 3.32
47 48 0.605589 AGAAGCCACGCCTAACAACC 60.606 55.000 0.00 0.00 0.00 3.77
48 49 0.605589 GAAGCCACGCCTAACAACCT 60.606 55.000 0.00 0.00 0.00 3.50
49 50 0.688487 AAGCCACGCCTAACAACCTA 59.312 50.000 0.00 0.00 0.00 3.08
50 51 0.249398 AGCCACGCCTAACAACCTAG 59.751 55.000 0.00 0.00 0.00 3.02
51 52 0.743345 GCCACGCCTAACAACCTAGG 60.743 60.000 7.41 7.41 41.40 3.02
59 60 3.542648 CCTAACAACCTAGGCCTAAAGC 58.457 50.000 14.85 0.00 42.60 3.51
60 61 3.054655 CCTAACAACCTAGGCCTAAAGCA 60.055 47.826 14.85 0.00 46.50 3.91
61 62 2.491675 ACAACCTAGGCCTAAAGCAC 57.508 50.000 14.85 0.00 46.50 4.40
62 63 1.004394 ACAACCTAGGCCTAAAGCACC 59.996 52.381 14.85 0.00 46.50 5.01
63 64 1.004277 CAACCTAGGCCTAAAGCACCA 59.996 52.381 14.85 0.00 46.50 4.17
64 65 0.618981 ACCTAGGCCTAAAGCACCAC 59.381 55.000 14.85 0.00 46.50 4.16
65 66 0.618458 CCTAGGCCTAAAGCACCACA 59.382 55.000 14.85 0.00 46.50 4.17
66 67 1.004277 CCTAGGCCTAAAGCACCACAA 59.996 52.381 14.85 0.00 46.50 3.33
67 68 2.554344 CCTAGGCCTAAAGCACCACAAA 60.554 50.000 14.85 0.00 46.50 2.83
68 69 2.080654 AGGCCTAAAGCACCACAAAA 57.919 45.000 1.29 0.00 46.50 2.44
69 70 1.686587 AGGCCTAAAGCACCACAAAAC 59.313 47.619 1.29 0.00 46.50 2.43
70 71 1.410882 GGCCTAAAGCACCACAAAACA 59.589 47.619 0.00 0.00 46.50 2.83
71 72 2.037121 GGCCTAAAGCACCACAAAACAT 59.963 45.455 0.00 0.00 46.50 2.71
72 73 3.257127 GGCCTAAAGCACCACAAAACATA 59.743 43.478 0.00 0.00 46.50 2.29
73 74 4.234574 GCCTAAAGCACCACAAAACATAC 58.765 43.478 0.00 0.00 42.97 2.39
74 75 4.261825 GCCTAAAGCACCACAAAACATACA 60.262 41.667 0.00 0.00 42.97 2.29
75 76 5.737635 GCCTAAAGCACCACAAAACATACAA 60.738 40.000 0.00 0.00 42.97 2.41
76 77 5.920273 CCTAAAGCACCACAAAACATACAAG 59.080 40.000 0.00 0.00 0.00 3.16
77 78 5.590530 AAAGCACCACAAAACATACAAGA 57.409 34.783 0.00 0.00 0.00 3.02
78 79 4.568152 AGCACCACAAAACATACAAGAC 57.432 40.909 0.00 0.00 0.00 3.01
79 80 3.003275 AGCACCACAAAACATACAAGACG 59.997 43.478 0.00 0.00 0.00 4.18
80 81 3.242936 GCACCACAAAACATACAAGACGT 60.243 43.478 0.00 0.00 0.00 4.34
81 82 4.278858 CACCACAAAACATACAAGACGTG 58.721 43.478 0.00 0.00 0.00 4.49
82 83 4.034626 CACCACAAAACATACAAGACGTGA 59.965 41.667 0.00 0.00 0.00 4.35
83 84 4.272504 ACCACAAAACATACAAGACGTGAG 59.727 41.667 0.00 0.00 0.00 3.51
84 85 4.211389 CACAAAACATACAAGACGTGAGC 58.789 43.478 0.00 0.00 0.00 4.26
85 86 3.874543 ACAAAACATACAAGACGTGAGCA 59.125 39.130 0.00 0.00 0.00 4.26
86 87 4.334203 ACAAAACATACAAGACGTGAGCAA 59.666 37.500 0.00 0.00 0.00 3.91
87 88 4.732285 AAACATACAAGACGTGAGCAAG 57.268 40.909 0.00 0.00 0.00 4.01
88 89 2.688507 ACATACAAGACGTGAGCAAGG 58.311 47.619 0.00 0.00 0.00 3.61
89 90 2.037251 ACATACAAGACGTGAGCAAGGT 59.963 45.455 0.00 0.00 0.00 3.50
90 91 3.257375 ACATACAAGACGTGAGCAAGGTA 59.743 43.478 0.00 0.00 0.00 3.08
91 92 2.440539 ACAAGACGTGAGCAAGGTAG 57.559 50.000 0.00 0.00 0.00 3.18
92 93 1.961394 ACAAGACGTGAGCAAGGTAGA 59.039 47.619 0.00 0.00 0.00 2.59
93 94 2.288273 ACAAGACGTGAGCAAGGTAGAC 60.288 50.000 0.00 0.00 0.00 2.59
94 95 1.617322 AGACGTGAGCAAGGTAGACA 58.383 50.000 0.00 0.00 0.00 3.41
95 96 1.961394 AGACGTGAGCAAGGTAGACAA 59.039 47.619 0.00 0.00 0.00 3.18
96 97 2.059541 GACGTGAGCAAGGTAGACAAC 58.940 52.381 0.00 0.00 0.00 3.32
97 98 1.687123 ACGTGAGCAAGGTAGACAACT 59.313 47.619 0.00 0.00 0.00 3.16
98 99 2.288273 ACGTGAGCAAGGTAGACAACTC 60.288 50.000 0.00 0.00 0.00 3.01
99 100 2.288213 CGTGAGCAAGGTAGACAACTCA 60.288 50.000 0.00 0.00 0.00 3.41
100 101 3.615110 CGTGAGCAAGGTAGACAACTCAT 60.615 47.826 0.00 0.00 36.62 2.90
101 102 3.681897 GTGAGCAAGGTAGACAACTCATG 59.318 47.826 0.00 0.00 36.62 3.07
102 103 3.578282 TGAGCAAGGTAGACAACTCATGA 59.422 43.478 0.00 0.00 0.00 3.07
103 104 3.929610 GAGCAAGGTAGACAACTCATGAC 59.070 47.826 0.00 0.00 0.00 3.06
104 105 3.324846 AGCAAGGTAGACAACTCATGACA 59.675 43.478 0.00 0.00 0.00 3.58
105 106 3.433615 GCAAGGTAGACAACTCATGACAC 59.566 47.826 0.00 0.00 0.00 3.67
106 107 4.631131 CAAGGTAGACAACTCATGACACA 58.369 43.478 0.00 0.00 0.00 3.72
107 108 4.258702 AGGTAGACAACTCATGACACAC 57.741 45.455 0.00 0.00 0.00 3.82
108 109 3.641436 AGGTAGACAACTCATGACACACA 59.359 43.478 0.00 0.00 0.00 3.72
109 110 4.284490 AGGTAGACAACTCATGACACACAT 59.716 41.667 0.00 0.00 40.17 3.21
110 111 5.480422 AGGTAGACAACTCATGACACACATA 59.520 40.000 0.00 0.00 37.46 2.29
111 112 5.807520 GGTAGACAACTCATGACACACATAG 59.192 44.000 0.00 0.00 37.46 2.23
112 113 4.248859 AGACAACTCATGACACACATAGC 58.751 43.478 0.00 0.00 37.46 2.97
113 114 3.338249 ACAACTCATGACACACATAGCC 58.662 45.455 0.00 0.00 37.46 3.93
114 115 2.299993 ACTCATGACACACATAGCCG 57.700 50.000 0.00 0.00 37.46 5.52
115 116 1.134699 ACTCATGACACACATAGCCGG 60.135 52.381 0.00 0.00 37.46 6.13
116 117 0.177836 TCATGACACACATAGCCGGG 59.822 55.000 2.18 0.00 37.46 5.73
117 118 1.153168 ATGACACACATAGCCGGGC 60.153 57.895 12.11 12.11 37.46 6.13
118 119 1.909459 ATGACACACATAGCCGGGCA 61.909 55.000 23.09 7.74 37.46 5.36
119 120 2.046314 ACACACATAGCCGGGCAC 60.046 61.111 23.09 0.00 0.00 5.01
120 121 2.268920 CACACATAGCCGGGCACT 59.731 61.111 23.09 3.52 0.00 4.40
121 122 1.815421 CACACATAGCCGGGCACTC 60.815 63.158 23.09 0.00 0.00 3.51
122 123 2.586079 CACATAGCCGGGCACTCG 60.586 66.667 23.09 8.95 0.00 4.18
123 124 2.758327 ACATAGCCGGGCACTCGA 60.758 61.111 23.09 0.66 0.00 4.04
124 125 2.028190 CATAGCCGGGCACTCGAG 59.972 66.667 23.09 11.84 0.00 4.04
125 126 3.917760 ATAGCCGGGCACTCGAGC 61.918 66.667 23.09 0.00 0.00 5.03
143 144 3.017232 CGTCGCTCGCTTCTAAAGT 57.983 52.632 0.00 0.00 0.00 2.66
144 145 0.635731 CGTCGCTCGCTTCTAAAGTG 59.364 55.000 0.00 0.00 40.33 3.16
145 146 0.367210 GTCGCTCGCTTCTAAAGTGC 59.633 55.000 0.00 0.00 38.86 4.40
146 147 0.038618 TCGCTCGCTTCTAAAGTGCA 60.039 50.000 0.00 0.00 38.86 4.57
147 148 0.093705 CGCTCGCTTCTAAAGTGCAC 59.906 55.000 9.40 9.40 38.86 4.57
148 149 1.148310 GCTCGCTTCTAAAGTGCACA 58.852 50.000 21.04 0.00 38.86 4.57
149 150 1.136224 GCTCGCTTCTAAAGTGCACAC 60.136 52.381 21.04 0.00 38.86 3.82
150 151 2.408050 CTCGCTTCTAAAGTGCACACT 58.592 47.619 21.04 7.82 44.94 3.55
151 152 2.135139 TCGCTTCTAAAGTGCACACTG 58.865 47.619 21.04 6.22 41.58 3.66
152 153 2.135139 CGCTTCTAAAGTGCACACTGA 58.865 47.619 21.04 8.60 41.58 3.41
153 154 2.543848 CGCTTCTAAAGTGCACACTGAA 59.456 45.455 21.04 15.31 41.58 3.02
154 155 3.002246 CGCTTCTAAAGTGCACACTGAAA 59.998 43.478 21.04 6.71 41.58 2.69
155 156 4.282873 GCTTCTAAAGTGCACACTGAAAC 58.717 43.478 21.04 9.15 41.58 2.78
156 157 4.035675 GCTTCTAAAGTGCACACTGAAACT 59.964 41.667 21.04 0.00 41.58 2.66
157 158 5.236478 GCTTCTAAAGTGCACACTGAAACTA 59.764 40.000 21.04 0.00 41.58 2.24
158 159 6.073003 GCTTCTAAAGTGCACACTGAAACTAT 60.073 38.462 21.04 0.00 41.58 2.12
159 160 7.421530 TTCTAAAGTGCACACTGAAACTATC 57.578 36.000 21.04 0.00 41.58 2.08
160 161 6.521162 TCTAAAGTGCACACTGAAACTATCA 58.479 36.000 21.04 0.00 41.58 2.15
161 162 5.424121 AAAGTGCACACTGAAACTATCAC 57.576 39.130 21.04 0.00 41.58 3.06
162 163 4.071961 AGTGCACACTGAAACTATCACA 57.928 40.909 21.04 0.00 40.75 3.58
163 164 4.645535 AGTGCACACTGAAACTATCACAT 58.354 39.130 21.04 0.00 40.75 3.21
164 165 4.692625 AGTGCACACTGAAACTATCACATC 59.307 41.667 21.04 0.00 40.75 3.06
165 166 4.452114 GTGCACACTGAAACTATCACATCA 59.548 41.667 13.17 0.00 33.47 3.07
166 167 5.049474 GTGCACACTGAAACTATCACATCAA 60.049 40.000 13.17 0.00 33.47 2.57
167 168 5.706833 TGCACACTGAAACTATCACATCAAT 59.293 36.000 0.00 0.00 33.47 2.57
168 169 6.025896 GCACACTGAAACTATCACATCAATG 58.974 40.000 0.00 0.00 33.47 2.82
169 170 6.025896 CACACTGAAACTATCACATCAATGC 58.974 40.000 0.00 0.00 33.47 3.56
170 171 5.706833 ACACTGAAACTATCACATCAATGCA 59.293 36.000 0.00 0.00 33.47 3.96
171 172 6.207221 ACACTGAAACTATCACATCAATGCAA 59.793 34.615 0.00 0.00 33.47 4.08
172 173 7.094075 ACACTGAAACTATCACATCAATGCAAT 60.094 33.333 0.00 0.00 33.47 3.56
173 174 7.431376 CACTGAAACTATCACATCAATGCAATC 59.569 37.037 0.00 0.00 33.47 2.67
174 175 7.338703 ACTGAAACTATCACATCAATGCAATCT 59.661 33.333 0.00 0.00 33.47 2.40
175 176 8.735692 TGAAACTATCACATCAATGCAATCTA 57.264 30.769 0.00 0.00 31.50 1.98
176 177 8.615211 TGAAACTATCACATCAATGCAATCTAC 58.385 33.333 0.00 0.00 31.50 2.59
177 178 7.502120 AACTATCACATCAATGCAATCTACC 57.498 36.000 0.00 0.00 0.00 3.18
178 179 6.594744 ACTATCACATCAATGCAATCTACCA 58.405 36.000 0.00 0.00 0.00 3.25
179 180 5.762825 ATCACATCAATGCAATCTACCAC 57.237 39.130 0.00 0.00 0.00 4.16
180 181 3.622612 TCACATCAATGCAATCTACCACG 59.377 43.478 0.00 0.00 0.00 4.94
181 182 3.622612 CACATCAATGCAATCTACCACGA 59.377 43.478 0.00 0.00 0.00 4.35
182 183 3.873361 ACATCAATGCAATCTACCACGAG 59.127 43.478 0.00 0.00 0.00 4.18
183 184 2.279741 TCAATGCAATCTACCACGAGC 58.720 47.619 0.00 0.00 0.00 5.03
184 185 2.009051 CAATGCAATCTACCACGAGCA 58.991 47.619 0.00 0.00 36.34 4.26
185 186 2.615447 CAATGCAATCTACCACGAGCAT 59.385 45.455 0.00 0.00 43.79 3.79
186 187 3.751479 ATGCAATCTACCACGAGCATA 57.249 42.857 0.00 0.00 40.54 3.14
187 188 3.751479 TGCAATCTACCACGAGCATAT 57.249 42.857 0.00 0.00 0.00 1.78
188 189 4.071961 TGCAATCTACCACGAGCATATT 57.928 40.909 0.00 0.00 0.00 1.28
189 190 4.058124 TGCAATCTACCACGAGCATATTC 58.942 43.478 0.00 0.00 0.00 1.75
190 191 4.058124 GCAATCTACCACGAGCATATTCA 58.942 43.478 0.00 0.00 0.00 2.57
191 192 4.692625 GCAATCTACCACGAGCATATTCAT 59.307 41.667 0.00 0.00 0.00 2.57
192 193 5.163913 GCAATCTACCACGAGCATATTCATC 60.164 44.000 0.00 0.00 0.00 2.92
193 194 5.728637 ATCTACCACGAGCATATTCATCA 57.271 39.130 0.00 0.00 0.00 3.07
194 195 5.529581 TCTACCACGAGCATATTCATCAA 57.470 39.130 0.00 0.00 0.00 2.57
195 196 5.289595 TCTACCACGAGCATATTCATCAAC 58.710 41.667 0.00 0.00 0.00 3.18
196 197 3.206150 ACCACGAGCATATTCATCAACC 58.794 45.455 0.00 0.00 0.00 3.77
197 198 3.118261 ACCACGAGCATATTCATCAACCT 60.118 43.478 0.00 0.00 0.00 3.50
198 199 3.496130 CCACGAGCATATTCATCAACCTC 59.504 47.826 0.00 0.00 0.00 3.85
199 200 3.183172 CACGAGCATATTCATCAACCTCG 59.817 47.826 0.00 0.00 44.28 4.63
200 201 2.733552 CGAGCATATTCATCAACCTCGG 59.266 50.000 0.00 0.00 37.61 4.63
201 202 2.481952 GAGCATATTCATCAACCTCGGC 59.518 50.000 0.00 0.00 0.00 5.54
202 203 1.195448 GCATATTCATCAACCTCGGCG 59.805 52.381 0.00 0.00 0.00 6.46
203 204 2.754472 CATATTCATCAACCTCGGCGA 58.246 47.619 10.14 10.14 0.00 5.54
204 205 2.218953 TATTCATCAACCTCGGCGAC 57.781 50.000 4.99 0.00 0.00 5.19
205 206 0.249120 ATTCATCAACCTCGGCGACA 59.751 50.000 4.99 0.00 0.00 4.35
206 207 0.669318 TTCATCAACCTCGGCGACAC 60.669 55.000 4.99 0.00 0.00 3.67
207 208 2.100631 CATCAACCTCGGCGACACC 61.101 63.158 4.99 0.00 0.00 4.16
217 218 4.131088 GCGACACCGGAGAGGGAC 62.131 72.222 9.46 0.00 46.96 4.46
218 219 3.812019 CGACACCGGAGAGGGACG 61.812 72.222 9.46 0.24 46.96 4.79
223 224 4.227134 CCGGAGAGGGACGGCATG 62.227 72.222 0.00 0.00 43.96 4.06
224 225 4.899239 CGGAGAGGGACGGCATGC 62.899 72.222 9.90 9.90 0.00 4.06
225 226 4.554036 GGAGAGGGACGGCATGCC 62.554 72.222 27.67 27.67 39.76 4.40
226 227 4.554036 GAGAGGGACGGCATGCCC 62.554 72.222 30.79 17.56 40.56 5.36
244 245 3.989104 CGAAAGGAGGCGGACATAT 57.011 52.632 0.00 0.00 0.00 1.78
245 246 1.502231 CGAAAGGAGGCGGACATATG 58.498 55.000 0.00 0.00 0.00 1.78
246 247 1.230324 GAAAGGAGGCGGACATATGC 58.770 55.000 1.58 0.00 0.00 3.14
253 254 2.666190 CGGACATATGCCGCCCTG 60.666 66.667 20.40 1.29 42.55 4.45
254 255 2.828868 GGACATATGCCGCCCTGA 59.171 61.111 1.58 0.00 0.00 3.86
255 256 1.376466 GGACATATGCCGCCCTGAT 59.624 57.895 1.58 0.00 0.00 2.90
256 257 0.674895 GGACATATGCCGCCCTGATC 60.675 60.000 1.58 0.00 0.00 2.92
257 258 0.674895 GACATATGCCGCCCTGATCC 60.675 60.000 1.58 0.00 0.00 3.36
258 259 1.377725 CATATGCCGCCCTGATCCC 60.378 63.158 0.00 0.00 0.00 3.85
259 260 1.847506 ATATGCCGCCCTGATCCCA 60.848 57.895 0.00 0.00 0.00 4.37
260 261 2.129555 ATATGCCGCCCTGATCCCAC 62.130 60.000 0.00 0.00 0.00 4.61
262 263 4.424711 GCCGCCCTGATCCCACAA 62.425 66.667 0.00 0.00 0.00 3.33
263 264 2.438434 CCGCCCTGATCCCACAAC 60.438 66.667 0.00 0.00 0.00 3.32
264 265 2.438434 CGCCCTGATCCCACAACC 60.438 66.667 0.00 0.00 0.00 3.77
265 266 2.763215 GCCCTGATCCCACAACCA 59.237 61.111 0.00 0.00 0.00 3.67
266 267 1.076549 GCCCTGATCCCACAACCAA 59.923 57.895 0.00 0.00 0.00 3.67
267 268 0.324645 GCCCTGATCCCACAACCAAT 60.325 55.000 0.00 0.00 0.00 3.16
268 269 1.064017 GCCCTGATCCCACAACCAATA 60.064 52.381 0.00 0.00 0.00 1.90
269 270 2.424812 GCCCTGATCCCACAACCAATAT 60.425 50.000 0.00 0.00 0.00 1.28
270 271 3.181434 GCCCTGATCCCACAACCAATATA 60.181 47.826 0.00 0.00 0.00 0.86
271 272 4.655963 CCCTGATCCCACAACCAATATAG 58.344 47.826 0.00 0.00 0.00 1.31
272 273 4.074970 CCTGATCCCACAACCAATATAGC 58.925 47.826 0.00 0.00 0.00 2.97
273 274 4.202503 CCTGATCCCACAACCAATATAGCT 60.203 45.833 0.00 0.00 0.00 3.32
274 275 4.973168 TGATCCCACAACCAATATAGCTC 58.027 43.478 0.00 0.00 0.00 4.09
275 276 4.411869 TGATCCCACAACCAATATAGCTCA 59.588 41.667 0.00 0.00 0.00 4.26
276 277 4.150897 TCCCACAACCAATATAGCTCAC 57.849 45.455 0.00 0.00 0.00 3.51
277 278 3.521531 TCCCACAACCAATATAGCTCACA 59.478 43.478 0.00 0.00 0.00 3.58
278 279 4.165950 TCCCACAACCAATATAGCTCACAT 59.834 41.667 0.00 0.00 0.00 3.21
279 280 4.516698 CCCACAACCAATATAGCTCACATC 59.483 45.833 0.00 0.00 0.00 3.06
280 281 4.212004 CCACAACCAATATAGCTCACATCG 59.788 45.833 0.00 0.00 0.00 3.84
281 282 3.809832 ACAACCAATATAGCTCACATCGC 59.190 43.478 0.00 0.00 0.00 4.58
282 283 2.677199 ACCAATATAGCTCACATCGCG 58.323 47.619 0.00 0.00 0.00 5.87
283 284 1.391485 CCAATATAGCTCACATCGCGC 59.609 52.381 0.00 0.00 0.00 6.86
307 308 4.411013 TCTCATCTGATATCATGGACCGT 58.589 43.478 5.72 0.00 0.00 4.83
326 328 8.248945 TGGACCGTCTTTTATAGTTTCTTCTAG 58.751 37.037 0.00 0.00 0.00 2.43
330 332 7.254151 CCGTCTTTTATAGTTTCTTCTAGCTGC 60.254 40.741 0.00 0.00 0.00 5.25
332 334 9.157104 GTCTTTTATAGTTTCTTCTAGCTGCTT 57.843 33.333 7.79 0.00 0.00 3.91
344 346 8.067751 TCTTCTAGCTGCTTTGTTAGAGATAA 57.932 34.615 7.79 0.00 32.79 1.75
345 347 8.700051 TCTTCTAGCTGCTTTGTTAGAGATAAT 58.300 33.333 7.79 0.00 32.79 1.28
346 348 8.879342 TTCTAGCTGCTTTGTTAGAGATAATC 57.121 34.615 7.79 0.00 32.79 1.75
347 349 8.243961 TCTAGCTGCTTTGTTAGAGATAATCT 57.756 34.615 7.79 0.00 42.47 2.40
411 413 4.517453 GTGCTTAGTGTGGTTAACATGGAA 59.483 41.667 8.10 0.00 41.97 3.53
504 555 7.670009 TTGTTGATCCTGCAAATAAAATTGG 57.330 32.000 0.00 0.00 0.00 3.16
512 563 5.163834 CCTGCAAATAAAATTGGCATGTCAC 60.164 40.000 0.00 0.00 0.00 3.67
536 587 9.317936 CACTCAGAATTCTAATAACATACTGCA 57.682 33.333 7.86 0.00 0.00 4.41
592 643 6.908825 TGTTTTTGTGCATATGAGAGGTAAC 58.091 36.000 6.97 4.35 0.00 2.50
593 644 5.794687 TTTTGTGCATATGAGAGGTAACG 57.205 39.130 6.97 0.00 46.39 3.18
613 664 5.717078 ACGTCACCACTTCTACATAAGAA 57.283 39.130 0.00 0.00 42.07 2.52
683 735 6.423604 GCACTAACTTGCAACCATTGTATTTT 59.576 34.615 0.00 0.00 42.49 1.82
684 736 7.596995 GCACTAACTTGCAACCATTGTATTTTA 59.403 33.333 0.00 0.00 42.49 1.52
687 739 5.465935 ACTTGCAACCATTGTATTTTACCG 58.534 37.500 0.00 0.00 0.00 4.02
688 740 5.010213 ACTTGCAACCATTGTATTTTACCGT 59.990 36.000 0.00 0.00 0.00 4.83
689 741 6.207025 ACTTGCAACCATTGTATTTTACCGTA 59.793 34.615 0.00 0.00 0.00 4.02
690 742 6.761099 TGCAACCATTGTATTTTACCGTAT 57.239 33.333 0.00 0.00 0.00 3.06
714 766 2.564947 TGCCCCAACCAAACATATGAAC 59.435 45.455 10.38 0.00 0.00 3.18
726 778 8.238631 ACCAAACATATGAACGTAACCAAATAC 58.761 33.333 10.38 0.00 0.00 1.89
727 779 8.455682 CCAAACATATGAACGTAACCAAATACT 58.544 33.333 10.38 0.00 0.00 2.12
728 780 9.485591 CAAACATATGAACGTAACCAAATACTC 57.514 33.333 10.38 0.00 0.00 2.59
747 799 9.561069 AAATACTCAGTGAAACAGACTGTAAAT 57.439 29.630 8.91 0.00 41.43 1.40
748 800 9.561069 AATACTCAGTGAAACAGACTGTAAATT 57.439 29.630 8.91 0.00 41.43 1.82
750 802 8.281212 ACTCAGTGAAACAGACTGTAAATTTT 57.719 30.769 8.91 0.00 41.43 1.82
751 803 8.739972 ACTCAGTGAAACAGACTGTAAATTTTT 58.260 29.630 8.91 0.00 41.43 1.94
780 832 4.487714 AACTCTCAGTGAAACAGAACCA 57.512 40.909 0.00 0.00 41.43 3.67
781 833 4.696479 ACTCTCAGTGAAACAGAACCAT 57.304 40.909 0.00 0.00 41.43 3.55
788 840 7.388776 TCTCAGTGAAACAGAACCATATGAAAG 59.611 37.037 3.65 0.00 41.43 2.62
807 860 0.243636 GAAACGCCCAAATCCCACAG 59.756 55.000 0.00 0.00 0.00 3.66
848 901 3.731728 GCCAGCACCCTCATCCCA 61.732 66.667 0.00 0.00 0.00 4.37
946 1289 2.047296 AGTTCCCTCCTAAATCCTCCCA 59.953 50.000 0.00 0.00 0.00 4.37
994 1344 1.434696 CCAATCCCATCGCAAGCAC 59.565 57.895 0.00 0.00 37.18 4.40
1001 1351 1.642037 CCATCGCAAGCACCAGACTG 61.642 60.000 0.00 0.00 37.18 3.51
1038 1400 3.775316 TCTTCTTCCTAATCACACTCCCC 59.225 47.826 0.00 0.00 0.00 4.81
1241 1607 1.208293 GGCGTCCTCAAGATCTTCCTT 59.792 52.381 4.57 0.00 0.00 3.36
1373 1739 1.115930 TCGGAGGCTAGATTCCTGCC 61.116 60.000 8.89 8.89 46.42 4.85
1381 1752 0.108186 TAGATTCCTGCCGTGCTGTG 60.108 55.000 0.00 0.00 0.00 3.66
1382 1753 3.044059 GATTCCTGCCGTGCTGTGC 62.044 63.158 0.00 0.00 0.00 4.57
1405 1779 4.293648 CTGGTGGCGGTCGTGTGA 62.294 66.667 0.00 0.00 0.00 3.58
1421 1797 3.664107 GTGTGACCTGTGTGATATGTGT 58.336 45.455 0.00 0.00 0.00 3.72
1435 1811 2.046314 GTGTCGTGGTGGATGGGG 60.046 66.667 0.00 0.00 0.00 4.96
1462 1838 2.052237 CTGGCGTGCGTTTGTGTC 60.052 61.111 0.00 0.00 0.00 3.67
1463 1839 3.838229 CTGGCGTGCGTTTGTGTCG 62.838 63.158 0.00 0.00 0.00 4.35
1468 1844 1.057636 CGTGCGTTTGTGTCGAGTAT 58.942 50.000 0.00 0.00 0.00 2.12
1501 1893 3.705604 ACCAGTTTGCGTTCAATGAAAG 58.294 40.909 4.57 4.57 31.33 2.62
1523 1915 7.673641 AAGTACTCTGATCCTGAATTCTGAT 57.326 36.000 13.45 11.46 0.00 2.90
1529 1921 8.053963 ACTCTGATCCTGAATTCTGATGAAATT 58.946 33.333 13.45 0.00 35.63 1.82
1572 1964 4.377897 ACCGTTTTTCTAAGACTGACTGG 58.622 43.478 0.00 0.00 0.00 4.00
1625 2055 4.430137 TGCAATCTGATCAGTCTTTTGC 57.570 40.909 28.23 28.23 0.00 3.68
1627 2057 3.730061 GCAATCTGATCAGTCTTTTGCCG 60.730 47.826 26.56 12.96 0.00 5.69
1628 2058 3.616956 ATCTGATCAGTCTTTTGCCGA 57.383 42.857 21.92 0.00 0.00 5.54
1664 2117 1.797025 GAGTGCTTCCGCTACAGTTT 58.203 50.000 0.00 0.00 36.97 2.66
1670 2123 2.699954 CTTCCGCTACAGTTTCCATGT 58.300 47.619 0.00 0.00 34.62 3.21
1673 2126 3.071479 TCCGCTACAGTTTCCATGTTTC 58.929 45.455 0.00 0.00 32.02 2.78
1679 2132 6.088085 CGCTACAGTTTCCATGTTTCAATTTC 59.912 38.462 0.00 0.00 32.02 2.17
1689 2142 3.701241 TGTTTCAATTTCGGTTCAGTGC 58.299 40.909 0.00 0.00 0.00 4.40
1702 2156 1.372582 TCAGTGCGAATGAATCCTGC 58.627 50.000 0.00 0.00 0.00 4.85
1707 2161 3.118629 AGTGCGAATGAATCCTGCTCTTA 60.119 43.478 0.00 0.00 0.00 2.10
1709 2163 4.274459 GTGCGAATGAATCCTGCTCTTATT 59.726 41.667 0.00 0.00 0.00 1.40
1727 2185 8.450964 GCTCTTATTTGCAGTATTGTGAGTAAA 58.549 33.333 0.00 0.00 0.00 2.01
1742 2200 5.054477 GTGAGTAAAGTAGTGCACAAGGAA 58.946 41.667 21.04 0.00 0.00 3.36
1744 2202 5.031066 AGTAAAGTAGTGCACAAGGAACA 57.969 39.130 21.04 0.00 0.00 3.18
1753 2211 1.200948 GCACAAGGAACAGGATTCAGC 59.799 52.381 0.00 0.00 0.00 4.26
1776 2242 6.301687 CATCTAAAGATGCTGAGATGTTGG 57.698 41.667 7.02 0.00 44.44 3.77
1780 2246 3.263489 AGATGCTGAGATGTTGGAGTG 57.737 47.619 0.00 0.00 0.00 3.51
1793 2259 8.353423 AGATGTTGGAGTGCTGTAAATATTTT 57.647 30.769 5.91 0.00 0.00 1.82
1799 2265 8.984891 TGGAGTGCTGTAAATATTTTTGAATG 57.015 30.769 5.91 0.00 0.00 2.67
1830 2299 6.037940 TCTGAAGCATCTATCAGTTGAAATGC 59.962 38.462 14.53 14.53 42.86 3.56
1838 2307 6.351711 TCTATCAGTTGAAATGCTACATGCT 58.648 36.000 0.00 0.00 43.37 3.79
1882 2351 4.507710 GTGGAACAACTATCTGATGCTCA 58.492 43.478 0.00 0.00 44.16 4.26
1885 2354 2.819115 ACAACTATCTGATGCTCAGCG 58.181 47.619 0.00 3.31 43.95 5.18
1930 2411 8.824783 CCTAATAAGAATCTCATTCCTCAGGAT 58.175 37.037 0.00 0.00 40.13 3.24
1935 2417 6.825610 AGAATCTCATTCCTCAGGATTGTAC 58.174 40.000 14.12 4.59 40.13 2.90
1948 2430 8.519526 CCTCAGGATTGTACTGTAGAGATTATC 58.480 40.741 0.00 0.00 37.25 1.75
1976 2458 8.215050 TCTTTCACTAATAACCTTGTTCCTGAA 58.785 33.333 0.00 0.00 0.00 3.02
1978 2460 7.979444 TCACTAATAACCTTGTTCCTGAAAG 57.021 36.000 0.00 0.00 0.00 2.62
1991 2473 1.792006 CTGAAAGGGACACACGGTAC 58.208 55.000 0.00 0.00 0.00 3.34
1992 2474 1.069513 CTGAAAGGGACACACGGTACA 59.930 52.381 0.00 0.00 28.84 2.90
1993 2475 1.069513 TGAAAGGGACACACGGTACAG 59.930 52.381 0.00 0.00 28.84 2.74
1994 2476 0.250166 AAAGGGACACACGGTACAGC 60.250 55.000 0.00 0.00 28.84 4.40
1995 2477 2.047560 GGGACACACGGTACAGCC 60.048 66.667 0.00 0.00 28.84 4.85
1996 2478 2.738480 GGACACACGGTACAGCCA 59.262 61.111 0.00 0.00 36.97 4.75
1997 2479 1.070105 GGACACACGGTACAGCCAA 59.930 57.895 0.00 0.00 36.97 4.52
1998 2480 0.533308 GGACACACGGTACAGCCAAA 60.533 55.000 0.00 0.00 36.97 3.28
1999 2481 1.519408 GACACACGGTACAGCCAAAT 58.481 50.000 0.00 0.00 36.97 2.32
2004 2486 1.876799 CACGGTACAGCCAAATCACAA 59.123 47.619 0.00 0.00 36.97 3.33
2024 2506 7.965718 TCACAAGATGATTCCCATTTTTCTTT 58.034 30.769 0.00 0.00 35.17 2.52
2025 2507 8.090214 TCACAAGATGATTCCCATTTTTCTTTC 58.910 33.333 0.00 0.00 35.17 2.62
2044 2526 7.440523 TCTTTCTGAGAAATTCTAAGTTGCC 57.559 36.000 8.23 0.00 0.00 4.52
2139 2626 8.865978 CAACATTAAAATTGGTCACTGATCATG 58.134 33.333 0.00 0.00 0.00 3.07
2191 2682 1.004044 CAACCAGCCCTCTGTGATCTT 59.996 52.381 0.00 0.00 38.66 2.40
2212 2703 6.840527 TCTTATTTGATGTGCCATATCCAGA 58.159 36.000 0.00 0.00 0.00 3.86
2313 2807 2.415512 GACGCTGTTCATAGGGAAACAC 59.584 50.000 0.00 0.00 37.23 3.32
2411 2905 2.287788 CCACGTGAATTTTTGCTGCTCT 60.288 45.455 19.30 0.00 0.00 4.09
2486 2980 7.271438 GCTAATTGCTAAAGCTTTACAGTTGAC 59.729 37.037 23.66 17.08 42.66 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 4.934515 TGTTTAGATTTTCGCCCGTTTTT 58.065 34.783 0.00 0.00 0.00 1.94
3 4 4.571372 TGTTTAGATTTTCGCCCGTTTT 57.429 36.364 0.00 0.00 0.00 2.43
4 5 4.202030 TGTTGTTTAGATTTTCGCCCGTTT 60.202 37.500 0.00 0.00 0.00 3.60
5 6 3.315749 TGTTGTTTAGATTTTCGCCCGTT 59.684 39.130 0.00 0.00 0.00 4.44
6 7 2.879646 TGTTGTTTAGATTTTCGCCCGT 59.120 40.909 0.00 0.00 0.00 5.28
7 8 3.546002 TGTTGTTTAGATTTTCGCCCG 57.454 42.857 0.00 0.00 0.00 6.13
8 9 5.116069 TCTTGTTGTTTAGATTTTCGCCC 57.884 39.130 0.00 0.00 0.00 6.13
9 10 5.117135 GCTTCTTGTTGTTTAGATTTTCGCC 59.883 40.000 0.00 0.00 0.00 5.54
10 11 5.117135 GGCTTCTTGTTGTTTAGATTTTCGC 59.883 40.000 0.00 0.00 0.00 4.70
11 12 6.142320 GTGGCTTCTTGTTGTTTAGATTTTCG 59.858 38.462 0.00 0.00 0.00 3.46
12 13 6.142320 CGTGGCTTCTTGTTGTTTAGATTTTC 59.858 38.462 0.00 0.00 0.00 2.29
13 14 5.977129 CGTGGCTTCTTGTTGTTTAGATTTT 59.023 36.000 0.00 0.00 0.00 1.82
14 15 5.519722 CGTGGCTTCTTGTTGTTTAGATTT 58.480 37.500 0.00 0.00 0.00 2.17
15 16 4.556699 GCGTGGCTTCTTGTTGTTTAGATT 60.557 41.667 0.00 0.00 0.00 2.40
16 17 3.058224 GCGTGGCTTCTTGTTGTTTAGAT 60.058 43.478 0.00 0.00 0.00 1.98
17 18 2.289547 GCGTGGCTTCTTGTTGTTTAGA 59.710 45.455 0.00 0.00 0.00 2.10
18 19 2.604614 GGCGTGGCTTCTTGTTGTTTAG 60.605 50.000 0.00 0.00 0.00 1.85
19 20 1.335496 GGCGTGGCTTCTTGTTGTTTA 59.665 47.619 0.00 0.00 0.00 2.01
20 21 0.102300 GGCGTGGCTTCTTGTTGTTT 59.898 50.000 0.00 0.00 0.00 2.83
21 22 0.751643 AGGCGTGGCTTCTTGTTGTT 60.752 50.000 0.00 0.00 0.00 2.83
22 23 0.107831 TAGGCGTGGCTTCTTGTTGT 59.892 50.000 0.00 0.00 0.00 3.32
23 24 1.069227 GTTAGGCGTGGCTTCTTGTTG 60.069 52.381 0.00 0.00 0.00 3.33
24 25 1.235724 GTTAGGCGTGGCTTCTTGTT 58.764 50.000 0.00 0.00 0.00 2.83
25 26 0.107831 TGTTAGGCGTGGCTTCTTGT 59.892 50.000 0.00 0.00 0.00 3.16
26 27 1.069227 GTTGTTAGGCGTGGCTTCTTG 60.069 52.381 0.00 0.00 0.00 3.02
27 28 1.235724 GTTGTTAGGCGTGGCTTCTT 58.764 50.000 0.00 0.00 0.00 2.52
28 29 0.605589 GGTTGTTAGGCGTGGCTTCT 60.606 55.000 0.00 0.00 0.00 2.85
29 30 0.605589 AGGTTGTTAGGCGTGGCTTC 60.606 55.000 0.00 0.00 0.00 3.86
30 31 0.688487 TAGGTTGTTAGGCGTGGCTT 59.312 50.000 0.00 0.00 0.00 4.35
31 32 0.249398 CTAGGTTGTTAGGCGTGGCT 59.751 55.000 0.38 0.38 0.00 4.75
32 33 0.743345 CCTAGGTTGTTAGGCGTGGC 60.743 60.000 0.00 0.00 34.23 5.01
33 34 3.453559 CCTAGGTTGTTAGGCGTGG 57.546 57.895 0.00 0.00 34.23 4.94
38 39 3.054655 TGCTTTAGGCCTAGGTTGTTAGG 60.055 47.826 13.36 0.00 42.62 2.69
39 40 3.939592 GTGCTTTAGGCCTAGGTTGTTAG 59.060 47.826 13.36 4.46 40.92 2.34
40 41 3.307904 GGTGCTTTAGGCCTAGGTTGTTA 60.308 47.826 13.36 0.00 40.92 2.41
41 42 2.554564 GGTGCTTTAGGCCTAGGTTGTT 60.555 50.000 13.36 0.00 40.92 2.83
42 43 1.004394 GGTGCTTTAGGCCTAGGTTGT 59.996 52.381 13.36 0.00 40.92 3.32
43 44 1.004277 TGGTGCTTTAGGCCTAGGTTG 59.996 52.381 13.36 5.87 40.92 3.77
44 45 1.004394 GTGGTGCTTTAGGCCTAGGTT 59.996 52.381 13.36 1.68 40.92 3.50
45 46 0.618981 GTGGTGCTTTAGGCCTAGGT 59.381 55.000 13.36 0.00 40.92 3.08
46 47 0.618458 TGTGGTGCTTTAGGCCTAGG 59.382 55.000 13.36 3.67 40.92 3.02
47 48 2.489938 TTGTGGTGCTTTAGGCCTAG 57.510 50.000 13.36 5.23 40.92 3.02
48 49 2.888414 GTTTTGTGGTGCTTTAGGCCTA 59.112 45.455 8.91 8.91 40.92 3.93
49 50 1.686587 GTTTTGTGGTGCTTTAGGCCT 59.313 47.619 11.78 11.78 40.92 5.19
50 51 1.410882 TGTTTTGTGGTGCTTTAGGCC 59.589 47.619 0.00 0.00 40.92 5.19
51 52 2.880963 TGTTTTGTGGTGCTTTAGGC 57.119 45.000 0.00 0.00 42.22 3.93
52 53 5.446143 TGTATGTTTTGTGGTGCTTTAGG 57.554 39.130 0.00 0.00 0.00 2.69
53 54 6.636850 GTCTTGTATGTTTTGTGGTGCTTTAG 59.363 38.462 0.00 0.00 0.00 1.85
54 55 6.500041 GTCTTGTATGTTTTGTGGTGCTTTA 58.500 36.000 0.00 0.00 0.00 1.85
55 56 5.348164 GTCTTGTATGTTTTGTGGTGCTTT 58.652 37.500 0.00 0.00 0.00 3.51
56 57 4.497340 CGTCTTGTATGTTTTGTGGTGCTT 60.497 41.667 0.00 0.00 0.00 3.91
57 58 3.003275 CGTCTTGTATGTTTTGTGGTGCT 59.997 43.478 0.00 0.00 0.00 4.40
58 59 3.242936 ACGTCTTGTATGTTTTGTGGTGC 60.243 43.478 0.00 0.00 0.00 5.01
59 60 4.034626 TCACGTCTTGTATGTTTTGTGGTG 59.965 41.667 0.00 0.00 0.00 4.17
60 61 4.193090 TCACGTCTTGTATGTTTTGTGGT 58.807 39.130 0.00 0.00 0.00 4.16
61 62 4.772434 CTCACGTCTTGTATGTTTTGTGG 58.228 43.478 0.00 0.00 0.00 4.17
62 63 4.211389 GCTCACGTCTTGTATGTTTTGTG 58.789 43.478 0.00 0.00 0.00 3.33
63 64 3.874543 TGCTCACGTCTTGTATGTTTTGT 59.125 39.130 0.00 0.00 0.00 2.83
64 65 4.466567 TGCTCACGTCTTGTATGTTTTG 57.533 40.909 0.00 0.00 0.00 2.44
65 66 4.024048 CCTTGCTCACGTCTTGTATGTTTT 60.024 41.667 0.00 0.00 0.00 2.43
66 67 3.498397 CCTTGCTCACGTCTTGTATGTTT 59.502 43.478 0.00 0.00 0.00 2.83
67 68 3.067106 CCTTGCTCACGTCTTGTATGTT 58.933 45.455 0.00 0.00 0.00 2.71
68 69 2.037251 ACCTTGCTCACGTCTTGTATGT 59.963 45.455 0.00 0.00 0.00 2.29
69 70 2.688507 ACCTTGCTCACGTCTTGTATG 58.311 47.619 0.00 0.00 0.00 2.39
70 71 3.762288 TCTACCTTGCTCACGTCTTGTAT 59.238 43.478 0.00 0.00 0.00 2.29
71 72 3.057736 GTCTACCTTGCTCACGTCTTGTA 60.058 47.826 0.00 0.00 0.00 2.41
72 73 1.961394 TCTACCTTGCTCACGTCTTGT 59.039 47.619 0.00 0.00 0.00 3.16
73 74 2.288213 TGTCTACCTTGCTCACGTCTTG 60.288 50.000 0.00 0.00 0.00 3.02
74 75 1.961394 TGTCTACCTTGCTCACGTCTT 59.039 47.619 0.00 0.00 0.00 3.01
75 76 1.617322 TGTCTACCTTGCTCACGTCT 58.383 50.000 0.00 0.00 0.00 4.18
76 77 2.059541 GTTGTCTACCTTGCTCACGTC 58.940 52.381 0.00 0.00 0.00 4.34
77 78 1.687123 AGTTGTCTACCTTGCTCACGT 59.313 47.619 0.00 0.00 0.00 4.49
78 79 2.288213 TGAGTTGTCTACCTTGCTCACG 60.288 50.000 0.00 0.00 0.00 4.35
79 80 3.386768 TGAGTTGTCTACCTTGCTCAC 57.613 47.619 0.00 0.00 0.00 3.51
80 81 3.578282 TCATGAGTTGTCTACCTTGCTCA 59.422 43.478 0.00 0.00 37.38 4.26
81 82 3.929610 GTCATGAGTTGTCTACCTTGCTC 59.070 47.826 0.00 0.00 0.00 4.26
82 83 3.324846 TGTCATGAGTTGTCTACCTTGCT 59.675 43.478 0.00 0.00 0.00 3.91
83 84 3.433615 GTGTCATGAGTTGTCTACCTTGC 59.566 47.826 0.00 0.00 0.00 4.01
84 85 4.449068 GTGTGTCATGAGTTGTCTACCTTG 59.551 45.833 0.00 0.00 0.00 3.61
85 86 4.100963 TGTGTGTCATGAGTTGTCTACCTT 59.899 41.667 0.00 0.00 0.00 3.50
86 87 3.641436 TGTGTGTCATGAGTTGTCTACCT 59.359 43.478 0.00 0.00 0.00 3.08
87 88 3.990092 TGTGTGTCATGAGTTGTCTACC 58.010 45.455 0.00 0.00 0.00 3.18
88 89 5.289675 GCTATGTGTGTCATGAGTTGTCTAC 59.710 44.000 0.00 0.00 37.91 2.59
89 90 5.410924 GCTATGTGTGTCATGAGTTGTCTA 58.589 41.667 0.00 0.00 37.91 2.59
90 91 4.248859 GCTATGTGTGTCATGAGTTGTCT 58.751 43.478 0.00 0.00 37.91 3.41
91 92 3.372206 GGCTATGTGTGTCATGAGTTGTC 59.628 47.826 0.00 0.00 37.91 3.18
92 93 3.338249 GGCTATGTGTGTCATGAGTTGT 58.662 45.455 0.00 0.00 37.91 3.32
93 94 2.349580 CGGCTATGTGTGTCATGAGTTG 59.650 50.000 0.00 0.00 37.91 3.16
94 95 2.621338 CGGCTATGTGTGTCATGAGTT 58.379 47.619 0.00 0.00 37.91 3.01
95 96 1.134699 CCGGCTATGTGTGTCATGAGT 60.135 52.381 0.00 0.00 37.91 3.41
96 97 1.575244 CCGGCTATGTGTGTCATGAG 58.425 55.000 0.00 0.00 37.91 2.90
97 98 0.177836 CCCGGCTATGTGTGTCATGA 59.822 55.000 0.00 0.00 37.91 3.07
98 99 1.439353 GCCCGGCTATGTGTGTCATG 61.439 60.000 0.71 0.00 37.91 3.07
99 100 1.153168 GCCCGGCTATGTGTGTCAT 60.153 57.895 0.71 0.00 40.25 3.06
100 101 2.267642 GCCCGGCTATGTGTGTCA 59.732 61.111 0.71 0.00 0.00 3.58
101 102 2.106683 GTGCCCGGCTATGTGTGTC 61.107 63.158 11.61 0.00 0.00 3.67
102 103 2.046314 GTGCCCGGCTATGTGTGT 60.046 61.111 11.61 0.00 0.00 3.72
103 104 1.815421 GAGTGCCCGGCTATGTGTG 60.815 63.158 11.61 0.00 0.00 3.82
104 105 2.584608 GAGTGCCCGGCTATGTGT 59.415 61.111 11.61 0.00 0.00 3.72
105 106 2.586079 CGAGTGCCCGGCTATGTG 60.586 66.667 11.61 0.00 0.00 3.21
106 107 2.758327 TCGAGTGCCCGGCTATGT 60.758 61.111 11.61 0.00 0.00 2.29
107 108 2.028190 CTCGAGTGCCCGGCTATG 59.972 66.667 11.61 0.00 0.00 2.23
108 109 3.917760 GCTCGAGTGCCCGGCTAT 61.918 66.667 15.13 0.00 0.00 2.97
125 126 0.635731 CACTTTAGAAGCGAGCGACG 59.364 55.000 0.00 0.00 45.66 5.12
126 127 0.367210 GCACTTTAGAAGCGAGCGAC 59.633 55.000 0.00 0.00 0.00 5.19
127 128 0.038618 TGCACTTTAGAAGCGAGCGA 60.039 50.000 0.00 0.00 0.00 4.93
128 129 0.093705 GTGCACTTTAGAAGCGAGCG 59.906 55.000 10.32 0.00 0.00 5.03
129 130 1.136224 GTGTGCACTTTAGAAGCGAGC 60.136 52.381 19.41 0.00 0.00 5.03
130 131 2.156504 CAGTGTGCACTTTAGAAGCGAG 59.843 50.000 19.41 0.00 40.20 5.03
131 132 2.135139 CAGTGTGCACTTTAGAAGCGA 58.865 47.619 19.41 0.00 40.20 4.93
132 133 2.135139 TCAGTGTGCACTTTAGAAGCG 58.865 47.619 19.41 0.00 40.20 4.68
133 134 4.035675 AGTTTCAGTGTGCACTTTAGAAGC 59.964 41.667 19.41 16.75 40.20 3.86
134 135 5.741388 AGTTTCAGTGTGCACTTTAGAAG 57.259 39.130 19.41 1.29 40.20 2.85
135 136 6.989759 TGATAGTTTCAGTGTGCACTTTAGAA 59.010 34.615 19.41 13.42 40.20 2.10
136 137 6.423905 GTGATAGTTTCAGTGTGCACTTTAGA 59.576 38.462 19.41 8.00 40.20 2.10
137 138 6.202762 TGTGATAGTTTCAGTGTGCACTTTAG 59.797 38.462 19.41 5.64 40.20 1.85
138 139 6.052360 TGTGATAGTTTCAGTGTGCACTTTA 58.948 36.000 19.41 0.00 40.20 1.85
139 140 4.881273 TGTGATAGTTTCAGTGTGCACTTT 59.119 37.500 19.41 2.86 40.20 2.66
140 141 4.450976 TGTGATAGTTTCAGTGTGCACTT 58.549 39.130 19.41 3.27 40.20 3.16
141 142 4.071961 TGTGATAGTTTCAGTGTGCACT 57.928 40.909 19.41 0.00 43.61 4.40
142 143 4.452114 TGATGTGATAGTTTCAGTGTGCAC 59.548 41.667 10.75 10.75 34.17 4.57
143 144 4.640364 TGATGTGATAGTTTCAGTGTGCA 58.360 39.130 0.00 0.00 34.17 4.57
144 145 5.611796 TTGATGTGATAGTTTCAGTGTGC 57.388 39.130 0.00 0.00 34.17 4.57
145 146 6.025896 GCATTGATGTGATAGTTTCAGTGTG 58.974 40.000 0.00 0.00 34.17 3.82
146 147 5.706833 TGCATTGATGTGATAGTTTCAGTGT 59.293 36.000 0.00 0.00 34.17 3.55
147 148 6.185852 TGCATTGATGTGATAGTTTCAGTG 57.814 37.500 0.00 0.00 34.17 3.66
148 149 6.822667 TTGCATTGATGTGATAGTTTCAGT 57.177 33.333 0.00 0.00 34.17 3.41
149 150 7.704271 AGATTGCATTGATGTGATAGTTTCAG 58.296 34.615 0.00 0.00 34.17 3.02
150 151 7.634671 AGATTGCATTGATGTGATAGTTTCA 57.365 32.000 0.00 0.00 0.00 2.69
151 152 8.072567 GGTAGATTGCATTGATGTGATAGTTTC 58.927 37.037 0.00 0.00 0.00 2.78
152 153 7.557358 TGGTAGATTGCATTGATGTGATAGTTT 59.443 33.333 0.00 0.00 0.00 2.66
153 154 7.012704 GTGGTAGATTGCATTGATGTGATAGTT 59.987 37.037 0.00 0.00 0.00 2.24
154 155 6.484643 GTGGTAGATTGCATTGATGTGATAGT 59.515 38.462 0.00 0.00 0.00 2.12
155 156 6.347160 CGTGGTAGATTGCATTGATGTGATAG 60.347 42.308 0.00 0.00 0.00 2.08
156 157 5.466393 CGTGGTAGATTGCATTGATGTGATA 59.534 40.000 0.00 0.00 0.00 2.15
157 158 4.274214 CGTGGTAGATTGCATTGATGTGAT 59.726 41.667 0.00 0.00 0.00 3.06
158 159 3.622612 CGTGGTAGATTGCATTGATGTGA 59.377 43.478 0.00 0.00 0.00 3.58
159 160 3.622612 TCGTGGTAGATTGCATTGATGTG 59.377 43.478 0.00 0.00 0.00 3.21
160 161 3.872696 TCGTGGTAGATTGCATTGATGT 58.127 40.909 0.00 0.00 0.00 3.06
161 162 3.303593 GCTCGTGGTAGATTGCATTGATG 60.304 47.826 0.00 0.00 0.00 3.07
162 163 2.874701 GCTCGTGGTAGATTGCATTGAT 59.125 45.455 0.00 0.00 0.00 2.57
163 164 2.279741 GCTCGTGGTAGATTGCATTGA 58.720 47.619 0.00 0.00 0.00 2.57
164 165 2.009051 TGCTCGTGGTAGATTGCATTG 58.991 47.619 0.00 0.00 0.00 2.82
165 166 2.401583 TGCTCGTGGTAGATTGCATT 57.598 45.000 0.00 0.00 0.00 3.56
166 167 2.627515 ATGCTCGTGGTAGATTGCAT 57.372 45.000 0.00 0.00 36.48 3.96
167 168 3.751479 ATATGCTCGTGGTAGATTGCA 57.249 42.857 0.00 0.00 34.88 4.08
168 169 4.058124 TGAATATGCTCGTGGTAGATTGC 58.942 43.478 0.00 0.00 0.00 3.56
169 170 5.928264 TGATGAATATGCTCGTGGTAGATTG 59.072 40.000 0.00 0.00 0.00 2.67
170 171 6.101650 TGATGAATATGCTCGTGGTAGATT 57.898 37.500 0.00 0.00 0.00 2.40
171 172 5.728637 TGATGAATATGCTCGTGGTAGAT 57.271 39.130 0.00 0.00 0.00 1.98
172 173 5.289595 GTTGATGAATATGCTCGTGGTAGA 58.710 41.667 0.00 0.00 0.00 2.59
173 174 4.449068 GGTTGATGAATATGCTCGTGGTAG 59.551 45.833 0.00 0.00 0.00 3.18
174 175 4.100963 AGGTTGATGAATATGCTCGTGGTA 59.899 41.667 0.00 0.00 0.00 3.25
175 176 3.118261 AGGTTGATGAATATGCTCGTGGT 60.118 43.478 0.00 0.00 0.00 4.16
176 177 3.470709 AGGTTGATGAATATGCTCGTGG 58.529 45.455 0.00 0.00 0.00 4.94
177 178 3.183172 CGAGGTTGATGAATATGCTCGTG 59.817 47.826 0.00 0.00 0.00 4.35
178 179 3.384668 CGAGGTTGATGAATATGCTCGT 58.615 45.455 0.00 0.00 0.00 4.18
179 180 2.733552 CCGAGGTTGATGAATATGCTCG 59.266 50.000 0.00 0.00 0.00 5.03
180 181 2.481952 GCCGAGGTTGATGAATATGCTC 59.518 50.000 0.00 0.00 0.00 4.26
181 182 2.498167 GCCGAGGTTGATGAATATGCT 58.502 47.619 0.00 0.00 0.00 3.79
182 183 1.195448 CGCCGAGGTTGATGAATATGC 59.805 52.381 0.00 0.00 0.00 3.14
183 184 2.476619 GTCGCCGAGGTTGATGAATATG 59.523 50.000 0.00 0.00 0.00 1.78
184 185 2.102420 TGTCGCCGAGGTTGATGAATAT 59.898 45.455 0.00 0.00 0.00 1.28
185 186 1.478916 TGTCGCCGAGGTTGATGAATA 59.521 47.619 0.00 0.00 0.00 1.75
186 187 0.249120 TGTCGCCGAGGTTGATGAAT 59.751 50.000 0.00 0.00 0.00 2.57
187 188 0.669318 GTGTCGCCGAGGTTGATGAA 60.669 55.000 0.00 0.00 0.00 2.57
188 189 1.080093 GTGTCGCCGAGGTTGATGA 60.080 57.895 0.00 0.00 0.00 2.92
189 190 2.100631 GGTGTCGCCGAGGTTGATG 61.101 63.158 0.00 0.00 0.00 3.07
190 191 2.264794 GGTGTCGCCGAGGTTGAT 59.735 61.111 0.00 0.00 0.00 2.57
200 201 4.131088 GTCCCTCTCCGGTGTCGC 62.131 72.222 0.00 0.00 34.56 5.19
201 202 3.812019 CGTCCCTCTCCGGTGTCG 61.812 72.222 0.00 0.00 0.00 4.35
202 203 3.450115 CCGTCCCTCTCCGGTGTC 61.450 72.222 0.00 0.00 39.38 3.67
205 206 4.779733 ATGCCGTCCCTCTCCGGT 62.780 66.667 0.00 0.00 45.91 5.28
206 207 4.227134 CATGCCGTCCCTCTCCGG 62.227 72.222 0.00 0.00 46.90 5.14
207 208 4.899239 GCATGCCGTCCCTCTCCG 62.899 72.222 6.36 0.00 0.00 4.63
208 209 4.554036 GGCATGCCGTCCCTCTCC 62.554 72.222 23.48 0.00 0.00 3.71
209 210 4.554036 GGGCATGCCGTCCCTCTC 62.554 72.222 29.90 10.13 39.46 3.20
214 215 3.508840 CTTTCGGGCATGCCGTCC 61.509 66.667 29.90 15.68 36.85 4.79
215 216 3.508840 CCTTTCGGGCATGCCGTC 61.509 66.667 29.90 16.44 36.85 4.79
216 217 3.976701 CTCCTTTCGGGCATGCCGT 62.977 63.158 29.90 0.00 36.85 5.68
217 218 3.204827 CTCCTTTCGGGCATGCCG 61.205 66.667 29.90 23.70 36.85 5.69
218 219 2.830370 CCTCCTTTCGGGCATGCC 60.830 66.667 29.47 29.47 34.39 4.40
219 220 3.521796 GCCTCCTTTCGGGCATGC 61.522 66.667 9.90 9.90 46.84 4.06
224 225 1.682451 TATGTCCGCCTCCTTTCGGG 61.682 60.000 0.64 0.00 45.31 5.14
225 226 0.393077 ATATGTCCGCCTCCTTTCGG 59.607 55.000 0.00 0.00 46.52 4.30
226 227 1.502231 CATATGTCCGCCTCCTTTCG 58.498 55.000 0.00 0.00 0.00 3.46
227 228 1.230324 GCATATGTCCGCCTCCTTTC 58.770 55.000 4.29 0.00 0.00 2.62
228 229 0.179018 GGCATATGTCCGCCTCCTTT 60.179 55.000 4.29 0.00 45.29 3.11
229 230 1.451936 GGCATATGTCCGCCTCCTT 59.548 57.895 4.29 0.00 45.29 3.36
230 231 2.872388 CGGCATATGTCCGCCTCCT 61.872 63.158 20.40 0.00 46.62 3.69
231 232 2.357517 CGGCATATGTCCGCCTCC 60.358 66.667 20.40 4.80 46.62 4.30
237 238 0.674895 GATCAGGGCGGCATATGTCC 60.675 60.000 12.47 4.02 0.00 4.02
238 239 0.674895 GGATCAGGGCGGCATATGTC 60.675 60.000 12.47 0.00 0.00 3.06
239 240 1.376466 GGATCAGGGCGGCATATGT 59.624 57.895 12.47 0.00 0.00 2.29
240 241 1.377725 GGGATCAGGGCGGCATATG 60.378 63.158 12.47 6.52 0.00 1.78
241 242 1.847506 TGGGATCAGGGCGGCATAT 60.848 57.895 12.47 0.00 0.00 1.78
242 243 2.447572 TGGGATCAGGGCGGCATA 60.448 61.111 12.47 0.00 0.00 3.14
243 244 4.195334 GTGGGATCAGGGCGGCAT 62.195 66.667 12.47 0.00 0.00 4.40
245 246 4.424711 TTGTGGGATCAGGGCGGC 62.425 66.667 0.00 0.00 0.00 6.53
246 247 2.438434 GTTGTGGGATCAGGGCGG 60.438 66.667 0.00 0.00 0.00 6.13
247 248 2.438434 GGTTGTGGGATCAGGGCG 60.438 66.667 0.00 0.00 0.00 6.13
248 249 0.324645 ATTGGTTGTGGGATCAGGGC 60.325 55.000 0.00 0.00 0.00 5.19
249 250 3.600448 ATATTGGTTGTGGGATCAGGG 57.400 47.619 0.00 0.00 0.00 4.45
250 251 4.074970 GCTATATTGGTTGTGGGATCAGG 58.925 47.826 0.00 0.00 0.00 3.86
251 252 4.978099 AGCTATATTGGTTGTGGGATCAG 58.022 43.478 0.00 0.00 0.00 2.90
252 253 4.411869 TGAGCTATATTGGTTGTGGGATCA 59.588 41.667 0.00 0.00 0.00 2.92
253 254 4.757149 GTGAGCTATATTGGTTGTGGGATC 59.243 45.833 0.00 0.00 0.00 3.36
254 255 4.165950 TGTGAGCTATATTGGTTGTGGGAT 59.834 41.667 0.00 0.00 0.00 3.85
255 256 3.521531 TGTGAGCTATATTGGTTGTGGGA 59.478 43.478 0.00 0.00 0.00 4.37
256 257 3.884895 TGTGAGCTATATTGGTTGTGGG 58.115 45.455 0.00 0.00 0.00 4.61
257 258 4.212004 CGATGTGAGCTATATTGGTTGTGG 59.788 45.833 0.00 0.00 0.00 4.17
258 259 4.319046 GCGATGTGAGCTATATTGGTTGTG 60.319 45.833 0.00 0.00 0.00 3.33
259 260 3.809832 GCGATGTGAGCTATATTGGTTGT 59.190 43.478 0.00 0.00 0.00 3.32
260 261 3.120889 CGCGATGTGAGCTATATTGGTTG 60.121 47.826 0.00 0.00 0.00 3.77
261 262 3.059884 CGCGATGTGAGCTATATTGGTT 58.940 45.455 0.00 0.00 0.00 3.67
262 263 2.677199 CGCGATGTGAGCTATATTGGT 58.323 47.619 0.00 0.00 0.00 3.67
263 264 1.391485 GCGCGATGTGAGCTATATTGG 59.609 52.381 12.10 0.00 40.64 3.16
264 265 2.776694 GCGCGATGTGAGCTATATTG 57.223 50.000 12.10 0.00 40.64 1.90
271 272 1.150567 ATGAGAAGCGCGATGTGAGC 61.151 55.000 12.10 0.00 44.68 4.26
272 273 0.851495 GATGAGAAGCGCGATGTGAG 59.149 55.000 12.10 0.00 0.00 3.51
273 274 0.457443 AGATGAGAAGCGCGATGTGA 59.543 50.000 12.10 0.00 0.00 3.58
274 275 0.575859 CAGATGAGAAGCGCGATGTG 59.424 55.000 12.10 0.00 0.00 3.21
275 276 0.457443 TCAGATGAGAAGCGCGATGT 59.543 50.000 12.10 0.00 0.00 3.06
276 277 1.780806 ATCAGATGAGAAGCGCGATG 58.219 50.000 12.10 0.00 0.00 3.84
277 278 3.192212 TGATATCAGATGAGAAGCGCGAT 59.808 43.478 12.10 0.00 0.00 4.58
278 279 2.554032 TGATATCAGATGAGAAGCGCGA 59.446 45.455 12.10 0.00 0.00 5.87
279 280 2.938869 TGATATCAGATGAGAAGCGCG 58.061 47.619 0.00 0.00 0.00 6.86
280 281 3.617706 CCATGATATCAGATGAGAAGCGC 59.382 47.826 11.78 0.00 0.00 5.92
281 282 4.863689 GTCCATGATATCAGATGAGAAGCG 59.136 45.833 11.78 0.00 0.00 4.68
282 283 5.177326 GGTCCATGATATCAGATGAGAAGC 58.823 45.833 11.78 1.81 0.00 3.86
283 284 5.047448 ACGGTCCATGATATCAGATGAGAAG 60.047 44.000 11.78 1.66 0.00 2.85
307 308 9.726438 AAAGCAGCTAGAAGAAACTATAAAAGA 57.274 29.630 0.00 0.00 0.00 2.52
354 356 4.448395 CGCCTTTTCTTTTTCATCAATGCA 59.552 37.500 0.00 0.00 0.00 3.96
468 519 6.152492 TGCAGGATCAACAATTTATAAGTGCA 59.848 34.615 0.00 0.00 32.58 4.57
498 549 5.479375 AGAATTCTGAGTGACATGCCAATTT 59.521 36.000 7.30 0.00 0.00 1.82
504 555 8.201554 TGTTATTAGAATTCTGAGTGACATGC 57.798 34.615 18.47 0.00 0.00 4.06
564 615 8.297470 ACCTCTCATATGCACAAAAACAATAT 57.703 30.769 0.00 0.00 0.00 1.28
573 624 4.081917 TGACGTTACCTCTCATATGCACAA 60.082 41.667 0.00 0.00 0.00 3.33
638 689 4.400567 GTGCTTGGCTGGAGAAATAGAATT 59.599 41.667 0.00 0.00 0.00 2.17
683 735 1.075050 TGGTTGGGGCAAAATACGGTA 59.925 47.619 0.00 0.00 0.00 4.02
684 736 0.178958 TGGTTGGGGCAAAATACGGT 60.179 50.000 0.00 0.00 0.00 4.83
687 739 3.477210 TGTTTGGTTGGGGCAAAATAC 57.523 42.857 0.00 0.00 0.00 1.89
688 740 5.485353 TCATATGTTTGGTTGGGGCAAAATA 59.515 36.000 1.90 0.00 0.00 1.40
689 741 4.288105 TCATATGTTTGGTTGGGGCAAAAT 59.712 37.500 1.90 0.00 0.00 1.82
690 742 3.648067 TCATATGTTTGGTTGGGGCAAAA 59.352 39.130 1.90 0.00 0.00 2.44
714 766 6.422701 TCTGTTTCACTGAGTATTTGGTTACG 59.577 38.462 0.00 0.00 0.00 3.18
765 817 7.439157 TCTTTCATATGGTTCTGTTTCACTG 57.561 36.000 2.13 0.00 0.00 3.66
778 830 4.448537 TTTGGGCGTTTCTTTCATATGG 57.551 40.909 2.13 0.00 0.00 2.74
780 832 4.099419 GGGATTTGGGCGTTTCTTTCATAT 59.901 41.667 0.00 0.00 0.00 1.78
781 833 3.445805 GGGATTTGGGCGTTTCTTTCATA 59.554 43.478 0.00 0.00 0.00 2.15
788 840 0.243636 CTGTGGGATTTGGGCGTTTC 59.756 55.000 0.00 0.00 0.00 2.78
843 896 3.393941 GGATTGAGATCAGAAGGTGGGAT 59.606 47.826 0.00 0.00 33.77 3.85
844 897 2.774234 GGATTGAGATCAGAAGGTGGGA 59.226 50.000 0.00 0.00 33.77 4.37
845 898 2.507058 TGGATTGAGATCAGAAGGTGGG 59.493 50.000 0.00 0.00 33.77 4.61
848 901 3.261897 ACGTTGGATTGAGATCAGAAGGT 59.738 43.478 0.00 0.00 33.77 3.50
912 1255 0.247460 GGGAACTGCAAGATTTGGGC 59.753 55.000 0.00 0.00 37.43 5.36
964 1314 0.636647 GGGATTGGGGATTTGAGGGT 59.363 55.000 0.00 0.00 0.00 4.34
994 1344 0.250640 AGCTGCTTTGGACAGTCTGG 60.251 55.000 4.53 0.00 37.47 3.86
1001 1351 1.003003 AGAAGAGGAGCTGCTTTGGAC 59.997 52.381 9.91 0.00 0.00 4.02
1038 1400 2.051804 GACATCGCCGCTGGATTTGG 62.052 60.000 0.00 0.00 0.00 3.28
1241 1607 1.154093 GTCGCGGATGACGTTCTCA 60.154 57.895 6.13 0.00 46.52 3.27
1349 1715 0.753262 GAATCTAGCCTCCGAAGCCA 59.247 55.000 0.00 0.00 0.00 4.75
1373 1739 4.021631 CAGCACAGGCACAGCACG 62.022 66.667 0.00 0.00 44.61 5.34
1404 1778 2.923655 CACGACACATATCACACAGGTC 59.076 50.000 0.00 0.00 0.00 3.85
1405 1779 2.353704 CCACGACACATATCACACAGGT 60.354 50.000 0.00 0.00 0.00 4.00
1421 1797 0.325602 GTAAACCCCATCCACCACGA 59.674 55.000 0.00 0.00 0.00 4.35
1435 1811 0.438830 CGCACGCCAGAGAAGTAAAC 59.561 55.000 0.00 0.00 0.00 2.01
1468 1844 5.786311 ACGCAAACTGGTAGTATTACAGAA 58.214 37.500 0.00 0.00 0.00 3.02
1479 1855 4.336993 ACTTTCATTGAACGCAAACTGGTA 59.663 37.500 0.00 0.00 37.59 3.25
1480 1856 3.130340 ACTTTCATTGAACGCAAACTGGT 59.870 39.130 0.00 0.00 37.59 4.00
1481 1857 3.705604 ACTTTCATTGAACGCAAACTGG 58.294 40.909 0.00 0.00 37.59 4.00
1486 1878 5.053811 TCAGAGTACTTTCATTGAACGCAA 58.946 37.500 0.00 0.00 38.60 4.85
1501 1893 7.048629 TCATCAGAATTCAGGATCAGAGTAC 57.951 40.000 8.44 0.00 0.00 2.73
1523 1915 6.427853 ACACGATTCATCACTGAAGAATTTCA 59.572 34.615 10.15 0.00 44.32 2.69
1529 1921 5.168569 GGTAACACGATTCATCACTGAAGA 58.831 41.667 0.00 0.00 44.32 2.87
1572 1964 5.557891 AATTCTAGCTGCACAGATCAAAC 57.442 39.130 1.02 0.00 0.00 2.93
1625 2055 0.379669 GTCCAGATTGCAATGCTCGG 59.620 55.000 18.59 15.50 0.00 4.63
1627 2057 1.329906 CTCGTCCAGATTGCAATGCTC 59.670 52.381 18.59 3.14 0.00 4.26
1628 2058 1.339438 ACTCGTCCAGATTGCAATGCT 60.339 47.619 18.59 10.86 0.00 3.79
1664 2117 4.582656 ACTGAACCGAAATTGAAACATGGA 59.417 37.500 0.00 0.00 0.00 3.41
1670 2123 2.614520 TCGCACTGAACCGAAATTGAAA 59.385 40.909 0.00 0.00 0.00 2.69
1673 2126 2.679355 TTCGCACTGAACCGAAATTG 57.321 45.000 0.00 0.00 40.11 2.32
1679 2132 1.062587 GGATTCATTCGCACTGAACCG 59.937 52.381 0.00 0.00 40.00 4.44
1689 2142 5.210715 GCAAATAAGAGCAGGATTCATTCG 58.789 41.667 0.00 0.00 0.00 3.34
1702 2156 9.979270 CTTTACTCACAATACTGCAAATAAGAG 57.021 33.333 0.00 0.00 0.00 2.85
1707 2161 8.721478 CACTACTTTACTCACAATACTGCAAAT 58.279 33.333 0.00 0.00 0.00 2.32
1709 2163 6.147164 GCACTACTTTACTCACAATACTGCAA 59.853 38.462 0.00 0.00 0.00 4.08
1719 2173 4.628074 TCCTTGTGCACTACTTTACTCAC 58.372 43.478 19.41 0.00 0.00 3.51
1720 2174 4.948341 TCCTTGTGCACTACTTTACTCA 57.052 40.909 19.41 0.00 0.00 3.41
1721 2175 5.054477 TGTTCCTTGTGCACTACTTTACTC 58.946 41.667 19.41 1.49 0.00 2.59
1722 2176 5.031066 TGTTCCTTGTGCACTACTTTACT 57.969 39.130 19.41 0.00 0.00 2.24
1727 2185 2.047061 TCCTGTTCCTTGTGCACTACT 58.953 47.619 19.41 0.00 0.00 2.57
1768 2234 7.944729 AAATATTTACAGCACTCCAACATCT 57.055 32.000 0.00 0.00 0.00 2.90
1770 2236 8.584157 TCAAAAATATTTACAGCACTCCAACAT 58.416 29.630 0.01 0.00 0.00 2.71
1771 2237 7.946207 TCAAAAATATTTACAGCACTCCAACA 58.054 30.769 0.01 0.00 0.00 3.33
1772 2238 8.810652 TTCAAAAATATTTACAGCACTCCAAC 57.189 30.769 0.01 0.00 0.00 3.77
1773 2239 9.421806 CATTCAAAAATATTTACAGCACTCCAA 57.578 29.630 0.01 0.00 0.00 3.53
1774 2240 8.801299 TCATTCAAAAATATTTACAGCACTCCA 58.199 29.630 0.01 0.00 0.00 3.86
1775 2241 9.638239 TTCATTCAAAAATATTTACAGCACTCC 57.362 29.630 0.01 0.00 0.00 3.85
1793 2259 5.319453 AGATGCTTCAGAGGTTTCATTCAA 58.681 37.500 2.07 0.00 0.00 2.69
1799 2265 5.669477 ACTGATAGATGCTTCAGAGGTTTC 58.331 41.667 6.91 0.00 41.53 2.78
1802 2268 4.713814 TCAACTGATAGATGCTTCAGAGGT 59.286 41.667 6.91 0.00 41.53 3.85
1882 2351 2.772287 AGAAAAACTCTGCTTAGCGCT 58.228 42.857 17.26 17.26 40.11 5.92
1885 2354 6.803154 TTAGGAAGAAAAACTCTGCTTAGC 57.197 37.500 0.00 0.00 33.37 3.09
1912 2391 6.705381 CAGTACAATCCTGAGGAATGAGATTC 59.295 42.308 22.69 7.96 34.77 2.52
1913 2392 6.157645 ACAGTACAATCCTGAGGAATGAGATT 59.842 38.462 22.69 3.22 34.77 2.40
1948 2430 8.507249 CAGGAACAAGGTTATTAGTGAAAGAAG 58.493 37.037 0.00 0.00 0.00 2.85
1956 2438 6.045106 TCCCTTTCAGGAACAAGGTTATTAGT 59.955 38.462 0.00 0.00 37.67 2.24
1962 2444 2.243736 TGTCCCTTTCAGGAACAAGGTT 59.756 45.455 0.00 0.00 37.67 3.50
1970 2452 1.052124 ACCGTGTGTCCCTTTCAGGA 61.052 55.000 0.00 0.00 37.67 3.86
1976 2458 1.370064 GCTGTACCGTGTGTCCCTT 59.630 57.895 0.00 0.00 0.00 3.95
1978 2460 2.047560 GGCTGTACCGTGTGTCCC 60.048 66.667 0.00 0.00 0.00 4.46
1982 2464 1.196808 GTGATTTGGCTGTACCGTGTG 59.803 52.381 0.00 0.00 43.94 3.82
1984 2466 1.518325 TGTGATTTGGCTGTACCGTG 58.482 50.000 0.00 0.00 43.94 4.94
1985 2467 2.151202 CTTGTGATTTGGCTGTACCGT 58.849 47.619 0.00 0.00 43.94 4.83
1986 2468 2.422597 TCTTGTGATTTGGCTGTACCG 58.577 47.619 0.00 0.00 43.94 4.02
1987 2469 4.009675 TCATCTTGTGATTTGGCTGTACC 58.990 43.478 0.00 0.00 39.84 3.34
1988 2470 5.824904 ATCATCTTGTGATTTGGCTGTAC 57.175 39.130 0.00 0.00 45.25 2.90
1999 2481 7.543359 AAGAAAAATGGGAATCATCTTGTGA 57.457 32.000 0.00 0.00 42.06 3.58
2004 2486 7.892241 TCTCAGAAAGAAAAATGGGAATCATCT 59.108 33.333 0.00 0.00 34.44 2.90
2019 2501 7.307989 CGGCAACTTAGAATTTCTCAGAAAGAA 60.308 37.037 13.29 0.00 42.35 2.52
2024 2506 4.894784 ACGGCAACTTAGAATTTCTCAGA 58.105 39.130 13.29 0.00 0.00 3.27
2025 2507 4.690748 TGACGGCAACTTAGAATTTCTCAG 59.309 41.667 1.27 4.12 0.00 3.35
2035 2517 5.411781 AGAGAATTAGTGACGGCAACTTAG 58.588 41.667 0.00 0.00 0.00 2.18
2041 2523 3.066900 GCTCTAGAGAATTAGTGACGGCA 59.933 47.826 24.24 0.00 0.00 5.69
2044 2526 4.576873 TCCTGCTCTAGAGAATTAGTGACG 59.423 45.833 24.24 0.00 0.00 4.35
2078 2565 4.000325 GGGAATTTGGCAAAACATACACC 59.000 43.478 17.70 11.53 0.00 4.16
2212 2703 1.410648 CCTAATCAGCAATGGGTGGCT 60.411 52.381 0.00 0.00 42.72 4.75
2411 2905 4.454678 AGAGAATGAACAGCTGTTTCACA 58.545 39.130 31.58 24.45 38.56 3.58
2486 2980 8.761497 TCTAAATTGTGTTAGACTTCAACTTCG 58.239 33.333 0.00 0.00 35.61 3.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.