Multiple sequence alignment - TraesCS2B01G436300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G436300 chr2B 100.000 2873 0 0 1 2873 627072101 627074973 0.000000e+00 5306.0
1 TraesCS2B01G436300 chr2B 86.802 197 22 3 1102 1298 17896593 17896401 1.730000e-52 217.0
2 TraesCS2B01G436300 chr2D 92.145 1706 71 28 784 2438 528635072 528636765 0.000000e+00 2350.0
3 TraesCS2B01G436300 chr2D 86.965 514 40 12 231 727 528634564 528635067 1.160000e-153 553.0
4 TraesCS2B01G436300 chr2D 91.192 386 14 12 2489 2873 528636785 528637151 9.190000e-140 507.0
5 TraesCS2B01G436300 chr2A 89.724 1596 78 32 786 2313 673326720 673328297 0.000000e+00 1960.0
6 TraesCS2B01G436300 chr2A 87.854 494 23 16 2407 2873 673328340 673328823 1.950000e-151 545.0
7 TraesCS2B01G436300 chr2A 79.678 497 47 26 234 695 673326231 673326708 2.780000e-80 309.0
8 TraesCS2B01G436300 chr2A 82.353 204 19 10 241 439 673324450 673324641 8.240000e-36 161.0
9 TraesCS2B01G436300 chr6A 84.751 682 74 19 1101 1776 454712534 454711877 0.000000e+00 656.0
10 TraesCS2B01G436300 chr6A 84.483 174 25 2 1421 1593 454934518 454934690 1.370000e-38 171.0
11 TraesCS2B01G436300 chr6D 83.554 681 78 23 1101 1776 317106274 317105623 8.800000e-170 606.0
12 TraesCS2B01G436300 chr6D 84.483 174 25 2 1421 1593 317414366 317414538 1.370000e-38 171.0
13 TraesCS2B01G436300 chr6B 81.618 680 81 24 1101 1776 507404512 507405151 9.120000e-145 523.0
14 TraesCS2B01G436300 chr6B 95.312 64 3 0 1215 1278 659580540 659580603 5.060000e-18 102.0
15 TraesCS2B01G436300 chr6B 96.429 56 2 0 722 777 379218554 379218499 3.050000e-15 93.5
16 TraesCS2B01G436300 chr6B 93.548 62 3 1 716 777 227642141 227642201 1.100000e-14 91.6
17 TraesCS2B01G436300 chr6B 93.333 60 3 1 718 777 618942382 618942324 1.420000e-13 87.9
18 TraesCS2B01G436300 chr1D 84.483 174 25 2 1421 1593 307420814 307420642 1.370000e-38 171.0
19 TraesCS2B01G436300 chr4D 84.091 176 22 6 1421 1593 479525199 479525371 6.370000e-37 165.0
20 TraesCS2B01G436300 chr5D 96.429 56 2 0 722 777 233460013 233460068 3.050000e-15 93.5
21 TraesCS2B01G436300 chr5D 96.429 56 2 0 722 777 496613063 496613008 3.050000e-15 93.5
22 TraesCS2B01G436300 chr5B 96.429 56 2 0 722 777 430883980 430883925 3.050000e-15 93.5
23 TraesCS2B01G436300 chr4A 92.188 64 4 1 714 777 208809744 208809682 3.940000e-14 89.8
24 TraesCS2B01G436300 chr4A 93.333 60 4 0 722 781 224410832 224410891 3.940000e-14 89.8
25 TraesCS2B01G436300 chr1B 90.625 64 6 0 714 777 454622852 454622789 5.100000e-13 86.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G436300 chr2B 627072101 627074973 2872 False 5306.000000 5306 100.000000 1 2873 1 chr2B.!!$F1 2872
1 TraesCS2B01G436300 chr2D 528634564 528637151 2587 False 1136.666667 2350 90.100667 231 2873 3 chr2D.!!$F1 2642
2 TraesCS2B01G436300 chr2A 673324450 673328823 4373 False 743.750000 1960 84.902250 234 2873 4 chr2A.!!$F1 2639
3 TraesCS2B01G436300 chr6A 454711877 454712534 657 True 656.000000 656 84.751000 1101 1776 1 chr6A.!!$R1 675
4 TraesCS2B01G436300 chr6D 317105623 317106274 651 True 606.000000 606 83.554000 1101 1776 1 chr6D.!!$R1 675
5 TraesCS2B01G436300 chr6B 507404512 507405151 639 False 523.000000 523 81.618000 1101 1776 1 chr6B.!!$F2 675

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
101 102 0.037419 CAGGCAATTTGGAAACGGGG 60.037 55.0 0.0 0.0 0.0 5.73 F
103 104 0.037697 GGCAATTTGGAAACGGGGAC 60.038 55.0 0.0 0.0 0.0 4.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1677 3553 0.183971 AGGAGGATGACGAGTCCGAT 59.816 55.0 0.34 0.0 40.76 4.18 R
2032 3930 0.319297 CAAGGTTGCTTTGCCTGCTC 60.319 55.0 0.00 0.0 34.90 4.26 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 0.673985 TGTCAGGGTTCAGACTGTCG 59.326 55.000 1.59 0.00 36.17 4.35
20 21 0.674534 GTCAGGGTTCAGACTGTCGT 59.325 55.000 1.59 0.00 36.17 4.34
21 22 0.959553 TCAGGGTTCAGACTGTCGTC 59.040 55.000 1.59 0.00 40.54 4.20
59 60 6.790232 TTTTTCTTCCTCCAACAGAACATT 57.210 33.333 0.00 0.00 0.00 2.71
60 61 5.772825 TTTCTTCCTCCAACAGAACATTG 57.227 39.130 0.00 0.00 0.00 2.82
61 62 4.437682 TCTTCCTCCAACAGAACATTGT 57.562 40.909 0.00 0.00 0.00 2.71
62 63 4.792068 TCTTCCTCCAACAGAACATTGTT 58.208 39.130 0.63 0.63 41.77 2.83
63 64 5.200483 TCTTCCTCCAACAGAACATTGTTT 58.800 37.500 3.08 0.00 39.17 2.83
64 65 5.656416 TCTTCCTCCAACAGAACATTGTTTT 59.344 36.000 3.08 0.00 39.17 2.43
65 66 6.831353 TCTTCCTCCAACAGAACATTGTTTTA 59.169 34.615 3.08 0.00 39.17 1.52
66 67 7.505585 TCTTCCTCCAACAGAACATTGTTTTAT 59.494 33.333 3.08 0.00 39.17 1.40
67 68 7.595819 TCCTCCAACAGAACATTGTTTTATT 57.404 32.000 3.08 0.00 39.17 1.40
68 69 8.698973 TCCTCCAACAGAACATTGTTTTATTA 57.301 30.769 3.08 0.00 39.17 0.98
69 70 9.308000 TCCTCCAACAGAACATTGTTTTATTAT 57.692 29.630 3.08 0.00 39.17 1.28
85 86 9.226606 TGTTTTATTATATATCGGAAAGGCAGG 57.773 33.333 0.00 0.00 0.00 4.85
86 87 7.859325 TTTATTATATATCGGAAAGGCAGGC 57.141 36.000 0.00 0.00 0.00 4.85
87 88 4.901197 TTATATATCGGAAAGGCAGGCA 57.099 40.909 0.00 0.00 0.00 4.75
88 89 3.788227 ATATATCGGAAAGGCAGGCAA 57.212 42.857 0.00 0.00 0.00 4.52
89 90 2.664402 ATATCGGAAAGGCAGGCAAT 57.336 45.000 0.00 0.00 0.00 3.56
90 91 2.435372 TATCGGAAAGGCAGGCAATT 57.565 45.000 0.00 0.00 0.00 2.32
91 92 1.560505 ATCGGAAAGGCAGGCAATTT 58.439 45.000 0.00 0.00 0.00 1.82
92 93 0.602562 TCGGAAAGGCAGGCAATTTG 59.397 50.000 0.00 0.00 0.00 2.32
93 94 0.390209 CGGAAAGGCAGGCAATTTGG 60.390 55.000 0.00 0.00 0.00 3.28
94 95 0.975887 GGAAAGGCAGGCAATTTGGA 59.024 50.000 0.00 0.00 0.00 3.53
95 96 1.347378 GGAAAGGCAGGCAATTTGGAA 59.653 47.619 0.00 0.00 0.00 3.53
96 97 2.224499 GGAAAGGCAGGCAATTTGGAAA 60.224 45.455 0.00 0.00 0.00 3.13
97 98 2.549064 AAGGCAGGCAATTTGGAAAC 57.451 45.000 0.00 0.00 0.00 2.78
98 99 0.318120 AGGCAGGCAATTTGGAAACG 59.682 50.000 0.00 0.00 0.00 3.60
99 100 0.670239 GGCAGGCAATTTGGAAACGG 60.670 55.000 0.00 0.00 0.00 4.44
100 101 0.670239 GCAGGCAATTTGGAAACGGG 60.670 55.000 0.00 0.00 0.00 5.28
101 102 0.037419 CAGGCAATTTGGAAACGGGG 60.037 55.000 0.00 0.00 0.00 5.73
102 103 0.178947 AGGCAATTTGGAAACGGGGA 60.179 50.000 0.00 0.00 0.00 4.81
103 104 0.037697 GGCAATTTGGAAACGGGGAC 60.038 55.000 0.00 0.00 0.00 4.46
104 105 0.676736 GCAATTTGGAAACGGGGACA 59.323 50.000 0.00 0.00 0.00 4.02
105 106 1.069358 GCAATTTGGAAACGGGGACAA 59.931 47.619 0.00 0.00 0.00 3.18
106 107 2.289382 GCAATTTGGAAACGGGGACAAT 60.289 45.455 0.00 0.00 0.00 2.71
107 108 3.056465 GCAATTTGGAAACGGGGACAATA 60.056 43.478 0.00 0.00 0.00 1.90
108 109 4.561734 GCAATTTGGAAACGGGGACAATAA 60.562 41.667 0.00 0.00 0.00 1.40
109 110 5.542779 CAATTTGGAAACGGGGACAATAAA 58.457 37.500 0.00 0.00 0.00 1.40
110 111 4.587584 TTTGGAAACGGGGACAATAAAC 57.412 40.909 0.00 0.00 0.00 2.01
111 112 3.225177 TGGAAACGGGGACAATAAACA 57.775 42.857 0.00 0.00 0.00 2.83
112 113 3.563223 TGGAAACGGGGACAATAAACAA 58.437 40.909 0.00 0.00 0.00 2.83
113 114 3.318557 TGGAAACGGGGACAATAAACAAC 59.681 43.478 0.00 0.00 0.00 3.32
114 115 3.570975 GGAAACGGGGACAATAAACAACT 59.429 43.478 0.00 0.00 0.00 3.16
115 116 4.542735 GAAACGGGGACAATAAACAACTG 58.457 43.478 0.00 0.00 0.00 3.16
116 117 3.217681 ACGGGGACAATAAACAACTGT 57.782 42.857 0.00 0.00 0.00 3.55
117 118 2.882137 ACGGGGACAATAAACAACTGTG 59.118 45.455 0.00 0.00 0.00 3.66
118 119 2.882137 CGGGGACAATAAACAACTGTGT 59.118 45.455 0.00 0.00 40.75 3.72
119 120 4.066490 CGGGGACAATAAACAACTGTGTA 58.934 43.478 0.00 0.00 36.80 2.90
120 121 4.153475 CGGGGACAATAAACAACTGTGTAG 59.847 45.833 0.00 0.00 36.80 2.74
121 122 4.082949 GGGGACAATAAACAACTGTGTAGC 60.083 45.833 0.00 0.00 36.80 3.58
122 123 4.760204 GGGACAATAAACAACTGTGTAGCT 59.240 41.667 0.00 0.00 36.80 3.32
123 124 5.106673 GGGACAATAAACAACTGTGTAGCTC 60.107 44.000 0.00 0.00 36.80 4.09
124 125 5.389516 GGACAATAAACAACTGTGTAGCTCG 60.390 44.000 0.00 0.00 36.80 5.03
125 126 5.054477 ACAATAAACAACTGTGTAGCTCGT 58.946 37.500 0.00 0.00 36.80 4.18
126 127 5.050363 ACAATAAACAACTGTGTAGCTCGTG 60.050 40.000 0.00 0.00 36.80 4.35
127 128 2.596904 AACAACTGTGTAGCTCGTGT 57.403 45.000 0.00 0.00 36.80 4.49
128 129 1.852942 ACAACTGTGTAGCTCGTGTG 58.147 50.000 0.00 0.00 35.72 3.82
129 130 1.407618 ACAACTGTGTAGCTCGTGTGA 59.592 47.619 0.00 0.00 35.72 3.58
130 131 2.159156 ACAACTGTGTAGCTCGTGTGAA 60.159 45.455 0.00 0.00 35.72 3.18
131 132 2.423926 ACTGTGTAGCTCGTGTGAAG 57.576 50.000 0.00 0.00 0.00 3.02
132 133 1.063806 CTGTGTAGCTCGTGTGAAGC 58.936 55.000 0.00 0.00 0.00 3.86
133 134 0.387565 TGTGTAGCTCGTGTGAAGCA 59.612 50.000 0.00 0.00 0.00 3.91
134 135 1.063806 GTGTAGCTCGTGTGAAGCAG 58.936 55.000 0.00 0.00 0.00 4.24
135 136 0.958822 TGTAGCTCGTGTGAAGCAGA 59.041 50.000 0.00 0.00 0.00 4.26
136 137 1.339929 TGTAGCTCGTGTGAAGCAGAA 59.660 47.619 0.00 0.00 0.00 3.02
137 138 1.989165 GTAGCTCGTGTGAAGCAGAAG 59.011 52.381 0.00 0.00 0.00 2.85
138 139 0.948141 AGCTCGTGTGAAGCAGAAGC 60.948 55.000 0.00 0.00 42.56 3.86
152 153 3.473093 CAGAAGCTGCATCAAGTTCTG 57.527 47.619 7.68 9.68 38.52 3.02
153 154 3.072211 CAGAAGCTGCATCAAGTTCTGA 58.928 45.455 17.26 0.00 44.56 3.27
154 155 3.501062 CAGAAGCTGCATCAAGTTCTGAA 59.499 43.478 17.26 0.00 44.56 3.02
155 156 3.501445 AGAAGCTGCATCAAGTTCTGAAC 59.499 43.478 12.54 12.54 37.67 3.18
156 157 2.157738 AGCTGCATCAAGTTCTGAACC 58.842 47.619 16.48 1.50 37.67 3.62
157 158 2.157738 GCTGCATCAAGTTCTGAACCT 58.842 47.619 16.48 0.96 37.67 3.50
158 159 2.161211 GCTGCATCAAGTTCTGAACCTC 59.839 50.000 16.48 1.61 37.67 3.85
159 160 3.405831 CTGCATCAAGTTCTGAACCTCA 58.594 45.455 16.48 1.49 37.67 3.86
160 161 4.008330 CTGCATCAAGTTCTGAACCTCAT 58.992 43.478 16.48 3.76 37.67 2.90
161 162 4.005650 TGCATCAAGTTCTGAACCTCATC 58.994 43.478 16.48 3.68 37.67 2.92
162 163 4.005650 GCATCAAGTTCTGAACCTCATCA 58.994 43.478 16.48 0.00 37.67 3.07
163 164 4.142730 GCATCAAGTTCTGAACCTCATCAC 60.143 45.833 16.48 0.00 37.67 3.06
164 165 4.963318 TCAAGTTCTGAACCTCATCACT 57.037 40.909 16.48 0.00 0.00 3.41
165 166 6.401394 CATCAAGTTCTGAACCTCATCACTA 58.599 40.000 16.48 0.00 37.67 2.74
166 167 6.611613 TCAAGTTCTGAACCTCATCACTAT 57.388 37.500 16.48 0.00 0.00 2.12
167 168 6.634805 TCAAGTTCTGAACCTCATCACTATC 58.365 40.000 16.48 0.00 0.00 2.08
168 169 6.211384 TCAAGTTCTGAACCTCATCACTATCA 59.789 38.462 16.48 0.00 0.00 2.15
169 170 6.219417 AGTTCTGAACCTCATCACTATCAG 57.781 41.667 16.48 0.00 36.50 2.90
170 171 5.954752 AGTTCTGAACCTCATCACTATCAGA 59.045 40.000 16.48 0.00 40.93 3.27
171 172 6.096705 AGTTCTGAACCTCATCACTATCAGAG 59.903 42.308 16.48 0.00 42.78 3.35
172 173 5.514169 TCTGAACCTCATCACTATCAGAGT 58.486 41.667 0.00 0.00 38.59 3.24
186 187 7.667575 ACTATCAGAGTGAACATAGGTGATT 57.332 36.000 0.00 0.00 36.87 2.57
187 188 7.721402 ACTATCAGAGTGAACATAGGTGATTC 58.279 38.462 0.00 0.00 36.87 2.52
188 189 4.998788 TCAGAGTGAACATAGGTGATTCG 58.001 43.478 0.00 0.00 0.00 3.34
189 190 3.553511 CAGAGTGAACATAGGTGATTCGC 59.446 47.826 0.00 0.00 33.89 4.70
190 191 3.195610 AGAGTGAACATAGGTGATTCGCA 59.804 43.478 0.00 0.00 35.71 5.10
191 192 3.932710 GAGTGAACATAGGTGATTCGCAA 59.067 43.478 0.00 0.00 35.71 4.85
192 193 4.323417 AGTGAACATAGGTGATTCGCAAA 58.677 39.130 0.00 0.00 35.71 3.68
193 194 4.393062 AGTGAACATAGGTGATTCGCAAAG 59.607 41.667 0.00 0.00 35.71 2.77
194 195 4.391830 GTGAACATAGGTGATTCGCAAAGA 59.608 41.667 0.00 0.00 33.89 2.52
195 196 5.000591 TGAACATAGGTGATTCGCAAAGAA 58.999 37.500 0.00 0.00 43.93 2.52
196 197 5.471797 TGAACATAGGTGATTCGCAAAGAAA 59.528 36.000 0.00 0.00 42.91 2.52
197 198 5.957842 ACATAGGTGATTCGCAAAGAAAA 57.042 34.783 0.00 0.00 42.91 2.29
198 199 5.942872 ACATAGGTGATTCGCAAAGAAAAG 58.057 37.500 0.00 0.00 42.91 2.27
199 200 5.705441 ACATAGGTGATTCGCAAAGAAAAGA 59.295 36.000 0.00 0.00 42.91 2.52
200 201 6.206634 ACATAGGTGATTCGCAAAGAAAAGAA 59.793 34.615 0.00 0.00 42.91 2.52
201 202 5.514274 AGGTGATTCGCAAAGAAAAGAAA 57.486 34.783 0.00 0.00 42.91 2.52
202 203 5.901552 AGGTGATTCGCAAAGAAAAGAAAA 58.098 33.333 0.00 0.00 42.91 2.29
203 204 5.979517 AGGTGATTCGCAAAGAAAAGAAAAG 59.020 36.000 0.00 0.00 42.91 2.27
204 205 5.977129 GGTGATTCGCAAAGAAAAGAAAAGA 59.023 36.000 0.00 0.00 42.91 2.52
205 206 6.475402 GGTGATTCGCAAAGAAAAGAAAAGAA 59.525 34.615 0.00 0.00 42.91 2.52
206 207 7.010091 GGTGATTCGCAAAGAAAAGAAAAGAAA 59.990 33.333 0.00 0.00 42.91 2.52
207 208 8.379902 GTGATTCGCAAAGAAAAGAAAAGAAAA 58.620 29.630 0.00 0.00 42.91 2.29
208 209 8.594687 TGATTCGCAAAGAAAAGAAAAGAAAAG 58.405 29.630 0.00 0.00 42.91 2.27
209 210 8.702163 ATTCGCAAAGAAAAGAAAAGAAAAGA 57.298 26.923 0.00 0.00 42.91 2.52
210 211 8.527567 TTCGCAAAGAAAAGAAAAGAAAAGAA 57.472 26.923 0.00 0.00 35.61 2.52
211 212 7.949186 TCGCAAAGAAAAGAAAAGAAAAGAAC 58.051 30.769 0.00 0.00 0.00 3.01
212 213 7.062956 TCGCAAAGAAAAGAAAAGAAAAGAACC 59.937 33.333 0.00 0.00 0.00 3.62
213 214 7.148656 CGCAAAGAAAAGAAAAGAAAAGAACCA 60.149 33.333 0.00 0.00 0.00 3.67
214 215 8.503196 GCAAAGAAAAGAAAAGAAAAGAACCAA 58.497 29.630 0.00 0.00 0.00 3.67
216 217 8.777865 AAGAAAAGAAAAGAAAAGAACCAAGG 57.222 30.769 0.00 0.00 0.00 3.61
217 218 7.907389 AGAAAAGAAAAGAAAAGAACCAAGGT 58.093 30.769 0.00 0.00 0.00 3.50
218 219 9.031537 AGAAAAGAAAAGAAAAGAACCAAGGTA 57.968 29.630 0.00 0.00 0.00 3.08
219 220 8.997621 AAAAGAAAAGAAAAGAACCAAGGTAC 57.002 30.769 0.00 0.00 0.00 3.34
220 221 7.712204 AAGAAAAGAAAAGAACCAAGGTACA 57.288 32.000 0.00 0.00 0.00 2.90
221 222 7.334844 AGAAAAGAAAAGAACCAAGGTACAG 57.665 36.000 0.00 0.00 0.00 2.74
222 223 6.321435 AGAAAAGAAAAGAACCAAGGTACAGG 59.679 38.462 0.00 0.00 0.00 4.00
223 224 3.487372 AGAAAAGAACCAAGGTACAGGC 58.513 45.455 0.00 0.00 0.00 4.85
224 225 3.138468 AGAAAAGAACCAAGGTACAGGCT 59.862 43.478 0.00 0.00 0.00 4.58
225 226 3.595190 AAAGAACCAAGGTACAGGCTT 57.405 42.857 0.00 0.00 0.00 4.35
226 227 4.717279 AAAGAACCAAGGTACAGGCTTA 57.283 40.909 0.00 0.00 0.00 3.09
227 228 3.697619 AGAACCAAGGTACAGGCTTAC 57.302 47.619 0.00 0.00 0.00 2.34
228 229 2.976882 AGAACCAAGGTACAGGCTTACA 59.023 45.455 0.00 0.00 0.00 2.41
229 230 3.008049 AGAACCAAGGTACAGGCTTACAG 59.992 47.826 0.00 0.00 0.00 2.74
260 261 2.421619 AGCAGTCTTGAGTTAGCAAGC 58.578 47.619 0.00 0.00 43.78 4.01
276 278 2.481952 GCAAGCGACAAGAGAAGTGAAT 59.518 45.455 0.00 0.00 0.00 2.57
277 279 3.058639 GCAAGCGACAAGAGAAGTGAATT 60.059 43.478 0.00 0.00 0.00 2.17
278 280 4.461405 CAAGCGACAAGAGAAGTGAATTG 58.539 43.478 0.00 0.00 0.00 2.32
279 281 2.481952 AGCGACAAGAGAAGTGAATTGC 59.518 45.455 0.00 0.00 0.00 3.56
280 282 2.224079 GCGACAAGAGAAGTGAATTGCA 59.776 45.455 0.00 0.00 0.00 4.08
281 283 3.666374 GCGACAAGAGAAGTGAATTGCAG 60.666 47.826 0.00 0.00 0.00 4.41
283 285 4.376819 CGACAAGAGAAGTGAATTGCAGAC 60.377 45.833 0.00 0.00 0.00 3.51
289 292 4.139786 AGAAGTGAATTGCAGACACACAT 58.860 39.130 17.48 7.48 37.05 3.21
292 295 2.294233 GTGAATTGCAGACACACATGGT 59.706 45.455 12.68 0.00 35.06 3.55
297 300 6.093909 TGAATTGCAGACACACATGGTAATAG 59.906 38.462 0.00 0.00 0.00 1.73
299 302 5.159273 TGCAGACACACATGGTAATAGAA 57.841 39.130 0.00 0.00 0.00 2.10
302 305 6.986231 TGCAGACACACATGGTAATAGAATAG 59.014 38.462 0.00 0.00 0.00 1.73
310 313 8.511126 ACACATGGTAATAGAATAGGGGATTTT 58.489 33.333 0.00 0.00 0.00 1.82
311 314 9.367160 CACATGGTAATAGAATAGGGGATTTTT 57.633 33.333 0.00 0.00 0.00 1.94
346 349 3.124297 CAGTTGACAAGAGAAGCGATTCC 59.876 47.826 10.29 1.66 0.00 3.01
397 2181 8.834749 AGAGGAGTATAAAAGAACAAGTTCAC 57.165 34.615 14.69 3.73 41.84 3.18
443 2236 1.659794 CCAAAGGCCAAAGTGACGG 59.340 57.895 5.01 0.00 0.00 4.79
480 2279 1.427020 GCTGCGAGCAATCCAGAAC 59.573 57.895 0.00 0.00 41.89 3.01
481 2280 1.986575 GCTGCGAGCAATCCAGAACC 61.987 60.000 0.00 0.00 41.89 3.62
482 2281 0.674581 CTGCGAGCAATCCAGAACCA 60.675 55.000 0.00 0.00 0.00 3.67
483 2282 0.674581 TGCGAGCAATCCAGAACCAG 60.675 55.000 0.00 0.00 0.00 4.00
484 2283 0.391661 GCGAGCAATCCAGAACCAGA 60.392 55.000 0.00 0.00 0.00 3.86
485 2284 1.945819 GCGAGCAATCCAGAACCAGAA 60.946 52.381 0.00 0.00 0.00 3.02
488 2287 0.813821 GCAATCCAGAACCAGAAGGC 59.186 55.000 0.00 0.00 39.06 4.35
491 2290 2.426024 CAATCCAGAACCAGAAGGCATG 59.574 50.000 0.00 0.00 39.06 4.06
492 2291 0.329261 TCCAGAACCAGAAGGCATGG 59.671 55.000 0.00 2.27 43.87 3.66
496 2295 1.642762 AGAACCAGAAGGCATGGGAAT 59.357 47.619 8.09 0.00 42.48 3.01
600 2414 3.227614 GGACTACCCAACAAAACATGGT 58.772 45.455 0.00 0.00 34.79 3.55
601 2415 3.005367 GGACTACCCAACAAAACATGGTG 59.995 47.826 0.00 0.00 46.87 4.17
608 2422 0.593128 ACAAAACATGGTGAGCGAGC 59.407 50.000 0.00 0.00 0.00 5.03
682 2503 6.339587 TCCCACTTAACTAAATTTTGGCTG 57.660 37.500 0.00 0.00 0.00 4.85
700 2521 3.306641 GGCTGAACCTATCTGGCTATCTG 60.307 52.174 2.40 0.00 45.46 2.90
722 2543 6.495181 TCTGGCCCTCTTCTAGATTATTACTG 59.505 42.308 0.00 0.00 0.00 2.74
723 2544 6.143915 TGGCCCTCTTCTAGATTATTACTGT 58.856 40.000 0.00 0.00 0.00 3.55
724 2545 7.302948 TGGCCCTCTTCTAGATTATTACTGTA 58.697 38.462 0.00 0.00 0.00 2.74
725 2546 7.232941 TGGCCCTCTTCTAGATTATTACTGTAC 59.767 40.741 0.00 0.00 0.00 2.90
726 2547 7.452189 GGCCCTCTTCTAGATTATTACTGTACT 59.548 40.741 0.00 0.00 0.00 2.73
727 2548 8.517056 GCCCTCTTCTAGATTATTACTGTACTC 58.483 40.741 0.00 0.00 0.00 2.59
728 2549 9.802039 CCCTCTTCTAGATTATTACTGTACTCT 57.198 37.037 0.00 0.00 0.00 3.24
733 2554 9.491675 TTCTAGATTATTACTGTACTCTCTCCG 57.508 37.037 0.00 0.00 0.00 4.63
734 2555 8.649591 TCTAGATTATTACTGTACTCTCTCCGT 58.350 37.037 0.00 0.00 0.00 4.69
735 2556 7.733402 AGATTATTACTGTACTCTCTCCGTC 57.267 40.000 0.00 0.00 0.00 4.79
736 2557 6.711645 AGATTATTACTGTACTCTCTCCGTCC 59.288 42.308 0.00 0.00 0.00 4.79
737 2558 2.306341 TACTGTACTCTCTCCGTCCG 57.694 55.000 0.00 0.00 0.00 4.79
738 2559 0.612229 ACTGTACTCTCTCCGTCCGA 59.388 55.000 0.00 0.00 0.00 4.55
739 2560 1.002888 ACTGTACTCTCTCCGTCCGAA 59.997 52.381 0.00 0.00 0.00 4.30
740 2561 2.082231 CTGTACTCTCTCCGTCCGAAA 58.918 52.381 0.00 0.00 0.00 3.46
741 2562 2.486982 CTGTACTCTCTCCGTCCGAAAA 59.513 50.000 0.00 0.00 0.00 2.29
742 2563 3.087031 TGTACTCTCTCCGTCCGAAAAT 58.913 45.455 0.00 0.00 0.00 1.82
743 2564 4.264253 TGTACTCTCTCCGTCCGAAAATA 58.736 43.478 0.00 0.00 0.00 1.40
744 2565 3.779271 ACTCTCTCCGTCCGAAAATAC 57.221 47.619 0.00 0.00 0.00 1.89
745 2566 3.354467 ACTCTCTCCGTCCGAAAATACT 58.646 45.455 0.00 0.00 0.00 2.12
746 2567 3.762823 ACTCTCTCCGTCCGAAAATACTT 59.237 43.478 0.00 0.00 0.00 2.24
747 2568 4.106029 TCTCTCCGTCCGAAAATACTTG 57.894 45.455 0.00 0.00 0.00 3.16
748 2569 3.508793 TCTCTCCGTCCGAAAATACTTGT 59.491 43.478 0.00 0.00 0.00 3.16
749 2570 3.841643 TCTCCGTCCGAAAATACTTGTC 58.158 45.455 0.00 0.00 0.00 3.18
750 2571 3.256383 TCTCCGTCCGAAAATACTTGTCA 59.744 43.478 0.00 0.00 0.00 3.58
751 2572 4.081862 TCTCCGTCCGAAAATACTTGTCAT 60.082 41.667 0.00 0.00 0.00 3.06
752 2573 4.571919 TCCGTCCGAAAATACTTGTCATT 58.428 39.130 0.00 0.00 0.00 2.57
753 2574 4.390603 TCCGTCCGAAAATACTTGTCATTG 59.609 41.667 0.00 0.00 0.00 2.82
754 2575 4.390603 CCGTCCGAAAATACTTGTCATTGA 59.609 41.667 0.00 0.00 0.00 2.57
755 2576 5.106869 CCGTCCGAAAATACTTGTCATTGAA 60.107 40.000 0.00 0.00 0.00 2.69
756 2577 6.367421 CGTCCGAAAATACTTGTCATTGAAA 58.633 36.000 0.00 0.00 0.00 2.69
757 2578 7.021196 CGTCCGAAAATACTTGTCATTGAAAT 58.979 34.615 0.00 0.00 0.00 2.17
758 2579 8.172484 CGTCCGAAAATACTTGTCATTGAAATA 58.828 33.333 0.00 0.00 0.00 1.40
759 2580 9.490663 GTCCGAAAATACTTGTCATTGAAATAG 57.509 33.333 0.00 0.00 0.00 1.73
760 2581 9.443323 TCCGAAAATACTTGTCATTGAAATAGA 57.557 29.630 0.00 0.00 0.00 1.98
869 2690 1.611851 CAGGACCAGCCTCTCCACT 60.612 63.158 0.00 0.00 46.97 4.00
870 2691 0.324738 CAGGACCAGCCTCTCCACTA 60.325 60.000 0.00 0.00 46.97 2.74
889 2710 1.191535 ATATATAAGCCGCGAGCCCA 58.808 50.000 8.23 0.05 45.47 5.36
912 2733 1.560923 CGATCACACCATTCGACTCC 58.439 55.000 0.00 0.00 34.92 3.85
915 2736 1.044611 TCACACCATTCGACTCCACA 58.955 50.000 0.00 0.00 0.00 4.17
933 2754 0.880278 CACCCTCGGTTCACACACAG 60.880 60.000 0.00 0.00 31.02 3.66
961 2782 1.066908 CTCAGCTACAGCCTACAGAGC 59.933 57.143 0.00 0.00 43.38 4.09
1035 2866 4.147449 TCGGAGGCGATGGTGCTG 62.147 66.667 0.00 0.00 34.52 4.41
1302 3157 0.760945 CTTCCCCGGACTCCTGCTAT 60.761 60.000 0.73 0.00 0.00 2.97
1388 3264 4.467084 GGCGTTCATGGGCGAGGA 62.467 66.667 12.64 0.00 0.00 3.71
1389 3265 2.892425 GCGTTCATGGGCGAGGAG 60.892 66.667 12.64 0.00 0.00 3.69
1390 3266 2.202932 CGTTCATGGGCGAGGAGG 60.203 66.667 4.24 0.00 0.00 4.30
1698 3574 1.777030 CGGACTCGTCATCCTCCTCG 61.777 65.000 0.00 0.00 33.70 4.63
1882 3761 4.465446 TCAGCTAGGCCCCGCTCT 62.465 66.667 13.08 0.00 33.45 4.09
1983 3869 2.032681 GAGCCCGCCTTTCACTGT 59.967 61.111 0.00 0.00 0.00 3.55
2021 3907 1.140652 TGATGGCAATGGAGTGCGATA 59.859 47.619 0.00 0.00 45.91 2.92
2083 3982 8.055181 GGCTCCATTTGGATAGATATTTGGATA 58.945 37.037 0.00 0.00 44.46 2.59
2084 3983 9.638176 GCTCCATTTGGATAGATATTTGGATAT 57.362 33.333 0.00 0.00 44.46 1.63
2107 4012 4.174704 TGATGGCAATGGAAGATAAGCT 57.825 40.909 0.00 0.00 0.00 3.74
2108 4013 4.139786 TGATGGCAATGGAAGATAAGCTC 58.860 43.478 0.00 0.00 0.00 4.09
2136 4041 2.916703 TGGGCGCTGCAATTTGGT 60.917 55.556 7.64 0.00 0.00 3.67
2143 4048 1.666888 CGCTGCAATTTGGTCTGGAAC 60.667 52.381 0.00 0.00 0.00 3.62
2216 4125 3.675228 CGAAACTGTGCTAGTATCGGGTT 60.675 47.826 0.00 0.00 39.18 4.11
2264 4184 4.201783 GGTTATATTTGAGTGCGTGTGGTC 60.202 45.833 0.00 0.00 0.00 4.02
2426 4354 2.665052 CGAAGTAGCCTAACCGAAACAC 59.335 50.000 0.00 0.00 0.00 3.32
2427 4355 3.656559 GAAGTAGCCTAACCGAAACACA 58.343 45.455 0.00 0.00 0.00 3.72
2445 4373 7.409343 CGAAACACAAGTCAAGAAAGAAACAAC 60.409 37.037 0.00 0.00 0.00 3.32
2478 4406 1.676014 CGGCCCTCGAGACTTCAAAAT 60.676 52.381 15.71 0.00 42.43 1.82
2482 4410 2.337583 CCTCGAGACTTCAAAATCGCA 58.662 47.619 15.71 0.00 35.23 5.10
2542 4474 3.119388 CGGCAACATGAACCAATCAATCT 60.119 43.478 0.00 0.00 42.54 2.40
2590 4537 1.269958 CGAGGCCCCATGATGATAGA 58.730 55.000 0.00 0.00 0.00 1.98
2592 4539 2.238144 CGAGGCCCCATGATGATAGATT 59.762 50.000 0.00 0.00 0.00 2.40
2593 4540 3.618351 GAGGCCCCATGATGATAGATTG 58.382 50.000 0.00 0.00 0.00 2.67
2594 4541 3.262842 AGGCCCCATGATGATAGATTGA 58.737 45.455 0.00 0.00 0.00 2.57
2595 4542 3.856813 AGGCCCCATGATGATAGATTGAT 59.143 43.478 0.00 0.00 0.00 2.57
2596 4543 5.041700 AGGCCCCATGATGATAGATTGATA 58.958 41.667 0.00 0.00 0.00 2.15
2598 4545 4.820716 GCCCCATGATGATAGATTGATAGC 59.179 45.833 0.00 0.00 0.00 2.97
2599 4546 5.374921 CCCCATGATGATAGATTGATAGCC 58.625 45.833 0.00 0.00 0.00 3.93
2600 4547 5.374921 CCCATGATGATAGATTGATAGCCC 58.625 45.833 0.00 0.00 0.00 5.19
2602 4549 5.396101 CCATGATGATAGATTGATAGCCCGT 60.396 44.000 0.00 0.00 0.00 5.28
2604 4551 6.114187 TGATGATAGATTGATAGCCCGTTT 57.886 37.500 0.00 0.00 0.00 3.60
2726 4674 3.425892 CCTCGTCGATCTTCAACTAACGT 60.426 47.826 0.00 0.00 0.00 3.99
2729 4685 5.082059 TCGTCGATCTTCAACTAACGTAAC 58.918 41.667 0.00 0.00 0.00 2.50
2730 4686 4.029784 CGTCGATCTTCAACTAACGTAACG 60.030 45.833 0.00 0.00 0.00 3.18
2735 4691 7.326789 TCGATCTTCAACTAACGTAACGAAAAT 59.673 33.333 0.00 0.00 0.00 1.82
2736 4692 8.577939 CGATCTTCAACTAACGTAACGAAAATA 58.422 33.333 0.00 0.00 0.00 1.40
2800 4757 0.392706 AGCGATGGATGATAACCGCA 59.607 50.000 0.00 0.00 44.32 5.69
2823 4780 0.319555 GACGGTGCACTGCAGAGTTA 60.320 55.000 25.67 3.27 40.08 2.24
2849 4806 3.026694 GCTTCCAGGCAAAATATCCAGT 58.973 45.455 0.00 0.00 0.00 4.00
2866 4823 4.065088 TCCAGTAGTGCAGTGTGATTTTC 58.935 43.478 3.69 0.00 0.00 2.29
2867 4824 4.067896 CCAGTAGTGCAGTGTGATTTTCT 58.932 43.478 3.69 0.00 0.00 2.52
2868 4825 4.083643 CCAGTAGTGCAGTGTGATTTTCTG 60.084 45.833 3.69 0.72 0.00 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.673985 CGACAGTCTGAACCCTGACA 59.326 55.000 6.91 0.00 41.83 3.58
2 3 0.959553 GACGACAGTCTGAACCCTGA 59.040 55.000 6.91 0.00 43.80 3.86
3 4 3.498676 GACGACAGTCTGAACCCTG 57.501 57.895 6.91 0.00 43.80 4.45
36 37 6.154363 ACAATGTTCTGTTGGAGGAAGAAAAA 59.846 34.615 0.00 0.00 32.03 1.94
37 38 5.656416 ACAATGTTCTGTTGGAGGAAGAAAA 59.344 36.000 0.00 0.00 32.03 2.29
38 39 5.200483 ACAATGTTCTGTTGGAGGAAGAAA 58.800 37.500 0.00 0.00 32.03 2.52
39 40 4.792068 ACAATGTTCTGTTGGAGGAAGAA 58.208 39.130 0.00 0.00 0.00 2.52
40 41 4.437682 ACAATGTTCTGTTGGAGGAAGA 57.562 40.909 0.00 0.00 0.00 2.87
41 42 5.520376 AAACAATGTTCTGTTGGAGGAAG 57.480 39.130 0.00 0.00 39.47 3.46
42 43 5.930837 AAAACAATGTTCTGTTGGAGGAA 57.069 34.783 0.00 0.00 39.47 3.36
43 44 7.595819 AATAAAACAATGTTCTGTTGGAGGA 57.404 32.000 0.00 0.00 39.47 3.71
59 60 9.226606 CCTGCCTTTCCGATATATAATAAAACA 57.773 33.333 0.00 0.00 0.00 2.83
60 61 8.182227 GCCTGCCTTTCCGATATATAATAAAAC 58.818 37.037 0.00 0.00 0.00 2.43
61 62 7.885922 TGCCTGCCTTTCCGATATATAATAAAA 59.114 33.333 0.00 0.00 0.00 1.52
62 63 7.398829 TGCCTGCCTTTCCGATATATAATAAA 58.601 34.615 0.00 0.00 0.00 1.40
63 64 6.953101 TGCCTGCCTTTCCGATATATAATAA 58.047 36.000 0.00 0.00 0.00 1.40
64 65 6.553953 TGCCTGCCTTTCCGATATATAATA 57.446 37.500 0.00 0.00 0.00 0.98
65 66 5.435686 TGCCTGCCTTTCCGATATATAAT 57.564 39.130 0.00 0.00 0.00 1.28
66 67 4.901197 TGCCTGCCTTTCCGATATATAA 57.099 40.909 0.00 0.00 0.00 0.98
67 68 4.901197 TTGCCTGCCTTTCCGATATATA 57.099 40.909 0.00 0.00 0.00 0.86
68 69 3.788227 TTGCCTGCCTTTCCGATATAT 57.212 42.857 0.00 0.00 0.00 0.86
69 70 3.788227 ATTGCCTGCCTTTCCGATATA 57.212 42.857 0.00 0.00 0.00 0.86
70 71 2.664402 ATTGCCTGCCTTTCCGATAT 57.336 45.000 0.00 0.00 0.00 1.63
71 72 2.426738 CAAATTGCCTGCCTTTCCGATA 59.573 45.455 0.00 0.00 0.00 2.92
72 73 1.205417 CAAATTGCCTGCCTTTCCGAT 59.795 47.619 0.00 0.00 0.00 4.18
73 74 0.602562 CAAATTGCCTGCCTTTCCGA 59.397 50.000 0.00 0.00 0.00 4.55
74 75 0.390209 CCAAATTGCCTGCCTTTCCG 60.390 55.000 0.00 0.00 0.00 4.30
75 76 0.975887 TCCAAATTGCCTGCCTTTCC 59.024 50.000 0.00 0.00 0.00 3.13
76 77 2.807967 GTTTCCAAATTGCCTGCCTTTC 59.192 45.455 0.00 0.00 0.00 2.62
77 78 2.806382 CGTTTCCAAATTGCCTGCCTTT 60.806 45.455 0.00 0.00 0.00 3.11
78 79 1.270252 CGTTTCCAAATTGCCTGCCTT 60.270 47.619 0.00 0.00 0.00 4.35
79 80 0.318120 CGTTTCCAAATTGCCTGCCT 59.682 50.000 0.00 0.00 0.00 4.75
80 81 0.670239 CCGTTTCCAAATTGCCTGCC 60.670 55.000 0.00 0.00 0.00 4.85
81 82 0.670239 CCCGTTTCCAAATTGCCTGC 60.670 55.000 0.00 0.00 0.00 4.85
82 83 0.037419 CCCCGTTTCCAAATTGCCTG 60.037 55.000 0.00 0.00 0.00 4.85
83 84 0.178947 TCCCCGTTTCCAAATTGCCT 60.179 50.000 0.00 0.00 0.00 4.75
84 85 0.037697 GTCCCCGTTTCCAAATTGCC 60.038 55.000 0.00 0.00 0.00 4.52
85 86 0.676736 TGTCCCCGTTTCCAAATTGC 59.323 50.000 0.00 0.00 0.00 3.56
86 87 3.676291 ATTGTCCCCGTTTCCAAATTG 57.324 42.857 0.00 0.00 0.00 2.32
87 88 5.070580 TGTTTATTGTCCCCGTTTCCAAATT 59.929 36.000 0.00 0.00 0.00 1.82
88 89 4.589374 TGTTTATTGTCCCCGTTTCCAAAT 59.411 37.500 0.00 0.00 0.00 2.32
89 90 3.958798 TGTTTATTGTCCCCGTTTCCAAA 59.041 39.130 0.00 0.00 0.00 3.28
90 91 3.563223 TGTTTATTGTCCCCGTTTCCAA 58.437 40.909 0.00 0.00 0.00 3.53
91 92 3.225177 TGTTTATTGTCCCCGTTTCCA 57.775 42.857 0.00 0.00 0.00 3.53
92 93 3.570975 AGTTGTTTATTGTCCCCGTTTCC 59.429 43.478 0.00 0.00 0.00 3.13
93 94 4.037089 ACAGTTGTTTATTGTCCCCGTTTC 59.963 41.667 0.00 0.00 0.00 2.78
94 95 3.955551 ACAGTTGTTTATTGTCCCCGTTT 59.044 39.130 0.00 0.00 0.00 3.60
95 96 3.316868 CACAGTTGTTTATTGTCCCCGTT 59.683 43.478 0.00 0.00 0.00 4.44
96 97 2.882137 CACAGTTGTTTATTGTCCCCGT 59.118 45.455 0.00 0.00 0.00 5.28
97 98 2.882137 ACACAGTTGTTTATTGTCCCCG 59.118 45.455 0.00 0.00 28.43 5.73
98 99 4.082949 GCTACACAGTTGTTTATTGTCCCC 60.083 45.833 0.00 0.00 37.15 4.81
99 100 4.760204 AGCTACACAGTTGTTTATTGTCCC 59.240 41.667 0.00 0.00 37.15 4.46
100 101 5.389516 CGAGCTACACAGTTGTTTATTGTCC 60.390 44.000 0.00 0.00 37.15 4.02
101 102 5.176958 ACGAGCTACACAGTTGTTTATTGTC 59.823 40.000 0.00 0.00 37.15 3.18
102 103 5.050363 CACGAGCTACACAGTTGTTTATTGT 60.050 40.000 0.00 0.00 37.15 2.71
103 104 5.050363 ACACGAGCTACACAGTTGTTTATTG 60.050 40.000 0.00 0.00 37.15 1.90
104 105 5.050363 CACACGAGCTACACAGTTGTTTATT 60.050 40.000 0.00 0.00 37.15 1.40
105 106 4.447724 CACACGAGCTACACAGTTGTTTAT 59.552 41.667 0.00 0.00 37.15 1.40
106 107 3.799963 CACACGAGCTACACAGTTGTTTA 59.200 43.478 0.00 0.00 37.15 2.01
107 108 2.607635 CACACGAGCTACACAGTTGTTT 59.392 45.455 0.00 0.00 37.15 2.83
108 109 2.159156 TCACACGAGCTACACAGTTGTT 60.159 45.455 0.00 0.00 37.15 2.83
109 110 1.407618 TCACACGAGCTACACAGTTGT 59.592 47.619 0.00 0.00 40.02 3.32
110 111 2.134201 TCACACGAGCTACACAGTTG 57.866 50.000 0.00 0.00 0.00 3.16
111 112 2.743938 CTTCACACGAGCTACACAGTT 58.256 47.619 0.00 0.00 0.00 3.16
112 113 1.603172 GCTTCACACGAGCTACACAGT 60.603 52.381 0.00 0.00 37.18 3.55
113 114 1.063806 GCTTCACACGAGCTACACAG 58.936 55.000 0.00 0.00 37.18 3.66
114 115 0.387565 TGCTTCACACGAGCTACACA 59.612 50.000 0.00 0.00 40.75 3.72
115 116 1.063806 CTGCTTCACACGAGCTACAC 58.936 55.000 0.00 0.00 40.75 2.90
116 117 0.958822 TCTGCTTCACACGAGCTACA 59.041 50.000 0.00 0.00 40.75 2.74
117 118 1.989165 CTTCTGCTTCACACGAGCTAC 59.011 52.381 0.00 0.00 40.75 3.58
118 119 1.670087 GCTTCTGCTTCACACGAGCTA 60.670 52.381 0.00 0.00 40.75 3.32
119 120 0.948141 GCTTCTGCTTCACACGAGCT 60.948 55.000 0.00 0.00 40.75 4.09
120 121 1.495069 GCTTCTGCTTCACACGAGC 59.505 57.895 0.00 0.00 40.53 5.03
132 133 3.072211 TCAGAACTTGATGCAGCTTCTG 58.928 45.455 20.45 20.45 39.38 3.02
133 134 3.413846 TCAGAACTTGATGCAGCTTCT 57.586 42.857 2.53 0.79 0.00 2.85
134 135 3.365767 GGTTCAGAACTTGATGCAGCTTC 60.366 47.826 13.13 0.00 35.27 3.86
135 136 2.555757 GGTTCAGAACTTGATGCAGCTT 59.444 45.455 13.13 0.00 35.27 3.74
136 137 2.157738 GGTTCAGAACTTGATGCAGCT 58.842 47.619 13.13 0.00 35.27 4.24
137 138 2.157738 AGGTTCAGAACTTGATGCAGC 58.842 47.619 13.13 0.00 35.27 5.25
138 139 3.405831 TGAGGTTCAGAACTTGATGCAG 58.594 45.455 13.13 0.00 35.27 4.41
139 140 3.490439 TGAGGTTCAGAACTTGATGCA 57.510 42.857 13.13 0.00 35.27 3.96
140 141 4.005650 TGATGAGGTTCAGAACTTGATGC 58.994 43.478 13.13 1.41 35.27 3.91
141 142 5.243981 AGTGATGAGGTTCAGAACTTGATG 58.756 41.667 13.13 0.00 35.27 3.07
142 143 5.495926 AGTGATGAGGTTCAGAACTTGAT 57.504 39.130 13.13 5.13 35.27 2.57
143 144 4.963318 AGTGATGAGGTTCAGAACTTGA 57.037 40.909 13.13 0.00 0.00 3.02
144 145 6.401394 TGATAGTGATGAGGTTCAGAACTTG 58.599 40.000 13.13 0.00 31.21 3.16
145 146 6.438741 TCTGATAGTGATGAGGTTCAGAACTT 59.561 38.462 13.13 5.34 37.31 2.66
146 147 5.954752 TCTGATAGTGATGAGGTTCAGAACT 59.045 40.000 13.13 0.00 37.31 3.01
147 148 6.127479 ACTCTGATAGTGATGAGGTTCAGAAC 60.127 42.308 4.52 4.52 39.12 3.01
148 149 5.954752 ACTCTGATAGTGATGAGGTTCAGAA 59.045 40.000 0.00 0.00 39.12 3.02
149 150 5.514169 ACTCTGATAGTGATGAGGTTCAGA 58.486 41.667 0.00 0.00 36.93 3.27
150 151 5.850557 ACTCTGATAGTGATGAGGTTCAG 57.149 43.478 0.00 0.00 36.93 3.02
162 163 7.469318 CGAATCACCTATGTTCACTCTGATAGT 60.469 40.741 0.00 0.00 39.81 2.12
163 164 6.860539 CGAATCACCTATGTTCACTCTGATAG 59.139 42.308 0.00 0.00 0.00 2.08
164 165 6.735968 GCGAATCACCTATGTTCACTCTGATA 60.736 42.308 0.00 0.00 0.00 2.15
165 166 5.595885 CGAATCACCTATGTTCACTCTGAT 58.404 41.667 0.00 0.00 0.00 2.90
166 167 4.678044 GCGAATCACCTATGTTCACTCTGA 60.678 45.833 0.00 0.00 0.00 3.27
167 168 3.553511 GCGAATCACCTATGTTCACTCTG 59.446 47.826 0.00 0.00 0.00 3.35
168 169 3.195610 TGCGAATCACCTATGTTCACTCT 59.804 43.478 0.00 0.00 0.00 3.24
169 170 3.521560 TGCGAATCACCTATGTTCACTC 58.478 45.455 0.00 0.00 0.00 3.51
170 171 3.610040 TGCGAATCACCTATGTTCACT 57.390 42.857 0.00 0.00 0.00 3.41
171 172 4.391830 TCTTTGCGAATCACCTATGTTCAC 59.608 41.667 0.00 0.00 0.00 3.18
172 173 4.574892 TCTTTGCGAATCACCTATGTTCA 58.425 39.130 0.00 0.00 0.00 3.18
173 174 5.545658 TTCTTTGCGAATCACCTATGTTC 57.454 39.130 0.00 0.00 0.00 3.18
174 175 5.957842 TTTCTTTGCGAATCACCTATGTT 57.042 34.783 0.00 0.00 0.00 2.71
175 176 5.705441 TCTTTTCTTTGCGAATCACCTATGT 59.295 36.000 0.00 0.00 0.00 2.29
176 177 6.182039 TCTTTTCTTTGCGAATCACCTATG 57.818 37.500 0.00 0.00 0.00 2.23
177 178 6.817765 TTCTTTTCTTTGCGAATCACCTAT 57.182 33.333 0.00 0.00 0.00 2.57
178 179 6.627395 TTTCTTTTCTTTGCGAATCACCTA 57.373 33.333 0.00 0.00 0.00 3.08
179 180 5.514274 TTTCTTTTCTTTGCGAATCACCT 57.486 34.783 0.00 0.00 0.00 4.00
180 181 5.977129 TCTTTTCTTTTCTTTGCGAATCACC 59.023 36.000 0.00 0.00 0.00 4.02
181 182 7.449934 TTCTTTTCTTTTCTTTGCGAATCAC 57.550 32.000 0.00 0.00 0.00 3.06
182 183 8.472683 TTTTCTTTTCTTTTCTTTGCGAATCA 57.527 26.923 0.00 0.00 0.00 2.57
183 184 8.807581 TCTTTTCTTTTCTTTTCTTTGCGAATC 58.192 29.630 0.00 0.00 0.00 2.52
184 185 8.702163 TCTTTTCTTTTCTTTTCTTTGCGAAT 57.298 26.923 0.00 0.00 0.00 3.34
185 186 8.432359 GTTCTTTTCTTTTCTTTTCTTTGCGAA 58.568 29.630 0.00 0.00 0.00 4.70
186 187 7.062956 GGTTCTTTTCTTTTCTTTTCTTTGCGA 59.937 33.333 0.00 0.00 0.00 5.10
187 188 7.148656 TGGTTCTTTTCTTTTCTTTTCTTTGCG 60.149 33.333 0.00 0.00 0.00 4.85
188 189 8.028540 TGGTTCTTTTCTTTTCTTTTCTTTGC 57.971 30.769 0.00 0.00 0.00 3.68
190 191 9.219603 CCTTGGTTCTTTTCTTTTCTTTTCTTT 57.780 29.630 0.00 0.00 0.00 2.52
191 192 8.375506 ACCTTGGTTCTTTTCTTTTCTTTTCTT 58.624 29.630 0.00 0.00 0.00 2.52
192 193 7.907389 ACCTTGGTTCTTTTCTTTTCTTTTCT 58.093 30.769 0.00 0.00 0.00 2.52
193 194 9.084164 GTACCTTGGTTCTTTTCTTTTCTTTTC 57.916 33.333 0.00 0.00 0.00 2.29
194 195 8.590204 TGTACCTTGGTTCTTTTCTTTTCTTTT 58.410 29.630 0.00 0.00 0.00 2.27
195 196 8.129496 TGTACCTTGGTTCTTTTCTTTTCTTT 57.871 30.769 0.00 0.00 0.00 2.52
196 197 7.147897 CCTGTACCTTGGTTCTTTTCTTTTCTT 60.148 37.037 0.00 0.00 0.00 2.52
197 198 6.321435 CCTGTACCTTGGTTCTTTTCTTTTCT 59.679 38.462 0.00 0.00 0.00 2.52
198 199 6.504398 CCTGTACCTTGGTTCTTTTCTTTTC 58.496 40.000 0.00 0.00 0.00 2.29
199 200 5.163447 GCCTGTACCTTGGTTCTTTTCTTTT 60.163 40.000 0.00 0.00 0.00 2.27
200 201 4.341235 GCCTGTACCTTGGTTCTTTTCTTT 59.659 41.667 0.00 0.00 0.00 2.52
201 202 3.889538 GCCTGTACCTTGGTTCTTTTCTT 59.110 43.478 0.00 0.00 0.00 2.52
202 203 3.138468 AGCCTGTACCTTGGTTCTTTTCT 59.862 43.478 0.00 0.00 0.00 2.52
203 204 3.487372 AGCCTGTACCTTGGTTCTTTTC 58.513 45.455 0.00 0.00 0.00 2.29
204 205 3.595190 AGCCTGTACCTTGGTTCTTTT 57.405 42.857 0.00 0.00 0.00 2.27
205 206 3.595190 AAGCCTGTACCTTGGTTCTTT 57.405 42.857 0.00 0.00 0.00 2.52
206 207 3.393278 TGTAAGCCTGTACCTTGGTTCTT 59.607 43.478 0.00 0.00 0.00 2.52
207 208 2.976882 TGTAAGCCTGTACCTTGGTTCT 59.023 45.455 0.00 0.00 0.00 3.01
208 209 3.335579 CTGTAAGCCTGTACCTTGGTTC 58.664 50.000 0.00 0.00 0.00 3.62
209 210 2.039879 CCTGTAAGCCTGTACCTTGGTT 59.960 50.000 0.00 0.00 0.00 3.67
210 211 1.628846 CCTGTAAGCCTGTACCTTGGT 59.371 52.381 0.00 0.00 0.00 3.67
211 212 1.679032 GCCTGTAAGCCTGTACCTTGG 60.679 57.143 0.00 0.00 0.00 3.61
212 213 1.739067 GCCTGTAAGCCTGTACCTTG 58.261 55.000 0.00 0.00 0.00 3.61
222 223 4.715523 TGCACCGGGCCTGTAAGC 62.716 66.667 11.58 11.78 43.89 3.09
223 224 2.033448 TTGCACCGGGCCTGTAAG 59.967 61.111 11.58 0.42 43.89 2.34
224 225 2.033448 CTTGCACCGGGCCTGTAA 59.967 61.111 11.58 2.11 43.89 2.41
225 226 4.715523 GCTTGCACCGGGCCTGTA 62.716 66.667 11.58 0.00 43.89 2.74
243 244 2.035961 TGTCGCTTGCTAACTCAAGACT 59.964 45.455 7.60 0.00 44.61 3.24
249 250 2.947852 TCTCTTGTCGCTTGCTAACTC 58.052 47.619 0.00 0.00 0.00 3.01
252 253 3.059884 CACTTCTCTTGTCGCTTGCTAA 58.940 45.455 0.00 0.00 0.00 3.09
254 255 1.069204 TCACTTCTCTTGTCGCTTGCT 59.931 47.619 0.00 0.00 0.00 3.91
255 256 1.502231 TCACTTCTCTTGTCGCTTGC 58.498 50.000 0.00 0.00 0.00 4.01
260 261 3.742882 TCTGCAATTCACTTCTCTTGTCG 59.257 43.478 0.00 0.00 0.00 4.35
276 278 5.159273 TCTATTACCATGTGTGTCTGCAA 57.841 39.130 0.00 0.00 0.00 4.08
277 279 4.817318 TCTATTACCATGTGTGTCTGCA 57.183 40.909 0.00 0.00 0.00 4.41
278 280 6.425114 CCTATTCTATTACCATGTGTGTCTGC 59.575 42.308 0.00 0.00 0.00 4.26
279 281 6.931281 CCCTATTCTATTACCATGTGTGTCTG 59.069 42.308 0.00 0.00 0.00 3.51
280 282 6.043243 CCCCTATTCTATTACCATGTGTGTCT 59.957 42.308 0.00 0.00 0.00 3.41
281 283 6.042781 TCCCCTATTCTATTACCATGTGTGTC 59.957 42.308 0.00 0.00 0.00 3.67
283 285 6.433847 TCCCCTATTCTATTACCATGTGTG 57.566 41.667 0.00 0.00 0.00 3.82
310 313 3.127721 TGTCAACTGCATTTCACGTCAAA 59.872 39.130 0.00 0.00 0.00 2.69
311 314 2.680339 TGTCAACTGCATTTCACGTCAA 59.320 40.909 0.00 0.00 0.00 3.18
346 349 1.003972 TGTTTTGTCGAAAGCTCTGCG 60.004 47.619 0.00 0.00 0.00 5.18
403 2187 6.068010 TGGGCATATTCTCGGATTATTGTTT 58.932 36.000 0.00 0.00 0.00 2.83
406 2190 6.349611 CCTTTGGGCATATTCTCGGATTATTG 60.350 42.308 0.00 0.00 0.00 1.90
471 2270 2.622452 CCATGCCTTCTGGTTCTGGATT 60.622 50.000 0.00 0.00 33.22 3.01
480 2279 0.462789 GCAATTCCCATGCCTTCTGG 59.537 55.000 0.00 0.00 37.85 3.86
492 2291 4.440829 TGAGGCGGGGGCAATTCC 62.441 66.667 0.00 0.00 0.00 3.01
581 2395 3.888930 CTCACCATGTTTTGTTGGGTAGT 59.111 43.478 0.00 0.00 37.32 2.73
595 2409 1.588403 CTCTCGCTCGCTCACCATG 60.588 63.158 0.00 0.00 0.00 3.66
596 2410 1.723608 CTCTCTCGCTCGCTCACCAT 61.724 60.000 0.00 0.00 0.00 3.55
597 2411 2.359975 TCTCTCGCTCGCTCACCA 60.360 61.111 0.00 0.00 0.00 4.17
598 2412 2.407210 CTCTCTCGCTCGCTCACC 59.593 66.667 0.00 0.00 0.00 4.02
600 2414 3.870422 CGCTCTCTCGCTCGCTCA 61.870 66.667 0.00 0.00 0.00 4.26
608 2422 2.781300 GCCTTTTGCGCTCTCTCG 59.219 61.111 9.73 0.00 0.00 4.04
682 2503 3.326836 GCCAGATAGCCAGATAGGTTC 57.673 52.381 0.00 0.00 40.61 3.62
695 2516 8.402683 AGTAATAATCTAGAAGAGGGCCAGATA 58.597 37.037 6.18 0.00 0.00 1.98
696 2517 7.180051 CAGTAATAATCTAGAAGAGGGCCAGAT 59.820 40.741 6.18 0.33 0.00 2.90
700 2521 6.673839 ACAGTAATAATCTAGAAGAGGGCC 57.326 41.667 0.00 0.00 0.00 5.80
722 2543 3.779271 ATTTTCGGACGGAGAGAGTAC 57.221 47.619 0.00 0.00 0.00 2.73
723 2544 4.521146 AGTATTTTCGGACGGAGAGAGTA 58.479 43.478 0.00 0.00 0.00 2.59
724 2545 3.354467 AGTATTTTCGGACGGAGAGAGT 58.646 45.455 0.00 0.00 0.00 3.24
725 2546 4.106197 CAAGTATTTTCGGACGGAGAGAG 58.894 47.826 0.00 0.00 0.00 3.20
726 2547 3.508793 ACAAGTATTTTCGGACGGAGAGA 59.491 43.478 0.00 0.00 0.00 3.10
727 2548 3.846360 ACAAGTATTTTCGGACGGAGAG 58.154 45.455 0.00 0.00 0.00 3.20
728 2549 3.256383 TGACAAGTATTTTCGGACGGAGA 59.744 43.478 0.00 0.00 0.00 3.71
729 2550 3.581755 TGACAAGTATTTTCGGACGGAG 58.418 45.455 0.00 0.00 0.00 4.63
730 2551 3.663995 TGACAAGTATTTTCGGACGGA 57.336 42.857 0.00 0.00 0.00 4.69
731 2552 4.390603 TCAATGACAAGTATTTTCGGACGG 59.609 41.667 0.00 0.00 0.00 4.79
732 2553 5.524511 TCAATGACAAGTATTTTCGGACG 57.475 39.130 0.00 0.00 0.00 4.79
733 2554 9.490663 CTATTTCAATGACAAGTATTTTCGGAC 57.509 33.333 0.00 0.00 0.00 4.79
734 2555 9.443323 TCTATTTCAATGACAAGTATTTTCGGA 57.557 29.630 0.00 0.00 0.00 4.55
773 2594 9.188588 CGCGAGTAAAATAATACTCCTTCAATA 57.811 33.333 0.00 0.00 45.87 1.90
774 2595 7.170998 CCGCGAGTAAAATAATACTCCTTCAAT 59.829 37.037 8.23 0.00 45.87 2.57
775 2596 6.477688 CCGCGAGTAAAATAATACTCCTTCAA 59.522 38.462 8.23 0.00 45.87 2.69
776 2597 5.981315 CCGCGAGTAAAATAATACTCCTTCA 59.019 40.000 8.23 0.00 45.87 3.02
777 2598 6.211515 TCCGCGAGTAAAATAATACTCCTTC 58.788 40.000 8.23 0.00 45.87 3.46
778 2599 6.152932 TCCGCGAGTAAAATAATACTCCTT 57.847 37.500 8.23 0.00 45.87 3.36
779 2600 5.779529 TCCGCGAGTAAAATAATACTCCT 57.220 39.130 8.23 0.00 45.87 3.69
780 2601 5.347907 CCATCCGCGAGTAAAATAATACTCC 59.652 44.000 8.23 2.37 45.87 3.85
781 2602 6.154445 TCCATCCGCGAGTAAAATAATACTC 58.846 40.000 8.23 4.73 45.40 2.59
782 2603 6.092955 TCCATCCGCGAGTAAAATAATACT 57.907 37.500 8.23 0.00 38.81 2.12
869 2690 2.361119 CTGGGCTCGCGGCTTATATATA 59.639 50.000 17.07 0.00 41.46 0.86
870 2691 1.137086 CTGGGCTCGCGGCTTATATAT 59.863 52.381 17.07 0.00 41.46 0.86
889 2710 1.153369 CGAATGGTGTGATCGGGCT 60.153 57.895 0.00 0.00 33.15 5.19
912 2733 1.145156 TGTGTGAACCGAGGGTGTG 59.855 57.895 0.00 0.00 35.34 3.82
915 2736 1.335132 ACTGTGTGTGAACCGAGGGT 61.335 55.000 0.00 0.00 37.65 4.34
933 2754 1.569708 GCTGTAGCTGAGCTGATCAC 58.430 55.000 18.79 7.74 40.10 3.06
961 2782 4.344865 CCCGGGGTTGGGTCTGTG 62.345 72.222 14.71 0.00 44.76 3.66
1035 2866 2.045634 TGCTGCCTGATGCTGTCC 60.046 61.111 0.00 0.00 42.00 4.02
1176 3016 1.226323 CATGTCGTCGGAGTCGTCC 60.226 63.158 0.00 0.00 40.43 4.79
1677 3553 0.183971 AGGAGGATGACGAGTCCGAT 59.816 55.000 0.34 0.00 40.76 4.18
1777 3656 4.069232 CCGGCTCAACTGCGAGGA 62.069 66.667 0.00 0.00 34.77 3.71
1907 3786 0.385029 TGCACTTGCGCATTGTCTTT 59.615 45.000 12.75 0.00 45.83 2.52
1927 3813 1.503542 CACTTGCTGGCGAATCCAC 59.496 57.895 0.00 0.00 40.72 4.02
2021 3907 2.851071 GCCTGCTCGCTCGATAGGT 61.851 63.158 17.82 0.00 33.57 3.08
2032 3930 0.319297 CAAGGTTGCTTTGCCTGCTC 60.319 55.000 0.00 0.00 34.90 4.26
2034 3932 1.301165 CCAAGGTTGCTTTGCCTGC 60.301 57.895 0.00 0.00 34.90 4.85
2083 3982 5.601313 AGCTTATCTTCCATTGCCATCAAAT 59.399 36.000 0.00 0.00 35.56 2.32
2084 3983 4.957954 AGCTTATCTTCCATTGCCATCAAA 59.042 37.500 0.00 0.00 35.56 2.69
2085 3984 4.539726 AGCTTATCTTCCATTGCCATCAA 58.460 39.130 0.00 0.00 36.51 2.57
2087 3986 4.396522 AGAGCTTATCTTCCATTGCCATC 58.603 43.478 0.00 0.00 32.99 3.51
2088 3987 4.396522 GAGAGCTTATCTTCCATTGCCAT 58.603 43.478 0.00 0.00 38.84 4.40
2089 3988 3.742327 CGAGAGCTTATCTTCCATTGCCA 60.742 47.826 0.00 0.00 38.84 4.92
2091 3990 2.805099 CCGAGAGCTTATCTTCCATTGC 59.195 50.000 0.00 0.00 38.84 3.56
2107 4012 4.069232 CGCCCAGTTGCTCCGAGA 62.069 66.667 0.00 0.00 0.00 4.04
2143 4048 1.339610 CAGCCAGAGGAGGAACTATCG 59.660 57.143 0.00 0.00 41.55 2.92
2187 4096 2.544267 ACTAGCACAGTTTCGCTTTGAC 59.456 45.455 0.00 0.00 39.70 3.18
2216 4125 1.340248 GACTCAGAAGGAACCACGACA 59.660 52.381 0.00 0.00 0.00 4.35
2264 4184 5.766150 TCACTCACAAGGGTGTAATTTTG 57.234 39.130 0.00 0.00 45.45 2.44
2344 4270 5.336102 AGAACAAATGGGGTGAGAATTCAT 58.664 37.500 8.44 0.00 35.39 2.57
2351 4277 4.523943 TGATCAAAGAACAAATGGGGTGAG 59.476 41.667 0.00 0.00 0.00 3.51
2353 4279 4.870123 TGATCAAAGAACAAATGGGGTG 57.130 40.909 0.00 0.00 0.00 4.61
2404 4331 2.297033 TGTTTCGGTTAGGCTACTTCGT 59.703 45.455 0.00 0.00 0.00 3.85
2426 4354 3.791353 GCCGTTGTTTCTTTCTTGACTTG 59.209 43.478 0.00 0.00 0.00 3.16
2427 4355 3.442273 TGCCGTTGTTTCTTTCTTGACTT 59.558 39.130 0.00 0.00 0.00 3.01
2472 4400 6.019479 GTGTTTGTTTAATGGTGCGATTTTGA 60.019 34.615 0.00 0.00 0.00 2.69
2478 4406 2.287069 CCGTGTTTGTTTAATGGTGCGA 60.287 45.455 0.00 0.00 0.00 5.10
2482 4410 2.946785 TCCCCGTGTTTGTTTAATGGT 58.053 42.857 0.00 0.00 0.00 3.55
2542 4474 4.017867 ACTTTTTCCCCTCGAATTATGGGA 60.018 41.667 8.23 5.39 45.30 4.37
2559 4491 2.258726 GGCCTCGCCGTGACTTTTT 61.259 57.895 0.00 0.00 39.62 1.94
2590 4537 2.024414 GCTCCAAAACGGGCTATCAAT 58.976 47.619 0.00 0.00 34.36 2.57
2592 4539 0.326595 TGCTCCAAAACGGGCTATCA 59.673 50.000 0.00 0.00 33.44 2.15
2593 4540 1.401905 CTTGCTCCAAAACGGGCTATC 59.598 52.381 0.00 0.00 33.44 2.08
2594 4541 1.271926 ACTTGCTCCAAAACGGGCTAT 60.272 47.619 0.00 0.00 33.44 2.97
2595 4542 0.109723 ACTTGCTCCAAAACGGGCTA 59.890 50.000 0.00 0.00 33.44 3.93
2596 4543 1.152756 ACTTGCTCCAAAACGGGCT 60.153 52.632 0.00 0.00 33.44 5.19
2598 4545 1.659794 CCACTTGCTCCAAAACGGG 59.340 57.895 0.00 0.00 34.36 5.28
2599 4546 1.659794 CCCACTTGCTCCAAAACGG 59.340 57.895 0.00 0.00 0.00 4.44
2600 4547 1.007387 GCCCACTTGCTCCAAAACG 60.007 57.895 0.00 0.00 0.00 3.60
2602 4549 1.152860 TCGCCCACTTGCTCCAAAA 60.153 52.632 0.00 0.00 0.00 2.44
2604 4551 2.032528 CTCGCCCACTTGCTCCAA 59.967 61.111 0.00 0.00 0.00 3.53
2664 4611 0.233590 CTCGATCGTCTCCAGCGTAG 59.766 60.000 15.94 0.00 0.00 3.51
2665 4612 0.179092 TCTCGATCGTCTCCAGCGTA 60.179 55.000 15.94 0.00 0.00 4.42
2666 4613 1.433053 CTCTCGATCGTCTCCAGCGT 61.433 60.000 15.94 0.00 0.00 5.07
2667 4614 1.278337 CTCTCGATCGTCTCCAGCG 59.722 63.158 15.94 0.00 0.00 5.18
2737 4693 6.206634 TGGATAAGCACGAGTTCAAGATTTTT 59.793 34.615 0.00 0.00 0.00 1.94
2738 4694 5.705441 TGGATAAGCACGAGTTCAAGATTTT 59.295 36.000 0.00 0.00 0.00 1.82
2739 4695 5.245531 TGGATAAGCACGAGTTCAAGATTT 58.754 37.500 0.00 0.00 0.00 2.17
2740 4696 4.832248 TGGATAAGCACGAGTTCAAGATT 58.168 39.130 0.00 0.00 0.00 2.40
2741 4697 4.471904 TGGATAAGCACGAGTTCAAGAT 57.528 40.909 0.00 0.00 0.00 2.40
2800 4757 3.848347 CTGCAGTGCACCGTCGTCT 62.848 63.158 15.37 0.00 33.79 4.18
2823 4780 0.178924 ATTTTGCCTGGAAGCAGGGT 60.179 50.000 0.00 0.00 45.13 4.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.