Multiple sequence alignment - TraesCS2B01G436200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G436200 chr2B 100.000 3008 0 0 1 3008 626885288 626882281 0.000000e+00 5555.0
1 TraesCS2B01G436200 chr2B 87.595 1048 104 12 1000 2025 626651901 626650858 0.000000e+00 1192.0
2 TraesCS2B01G436200 chr2D 92.749 2565 127 23 1 2535 528591053 528588518 0.000000e+00 3651.0
3 TraesCS2B01G436200 chr2D 86.502 1052 114 15 1000 2025 528473772 528472723 0.000000e+00 1131.0
4 TraesCS2B01G436200 chr2D 95.580 362 11 5 2525 2884 528588558 528588200 2.600000e-160 575.0
5 TraesCS2B01G436200 chr2D 99.206 126 1 0 2883 3008 475083494 475083619 8.390000e-56 228.0
6 TraesCS2B01G436200 chr2A 92.229 1853 96 23 313 2123 673278206 673276360 0.000000e+00 2580.0
7 TraesCS2B01G436200 chr2A 87.512 1049 98 18 1000 2016 673196134 673195087 0.000000e+00 1181.0
8 TraesCS2B01G436200 chr2A 83.548 310 33 8 2106 2411 673273737 673273442 1.060000e-69 274.0
9 TraesCS2B01G436200 chr7D 99.206 126 1 0 2883 3008 363554546 363554671 8.390000e-56 228.0
10 TraesCS2B01G436200 chr7D 98.425 127 2 0 2882 3008 121683129 121683255 1.090000e-54 224.0
11 TraesCS2B01G436200 chr7D 98.413 126 2 0 2883 3008 224070887 224070762 3.900000e-54 222.0
12 TraesCS2B01G436200 chr7D 98.413 126 2 0 2883 3008 461572873 461572998 3.900000e-54 222.0
13 TraesCS2B01G436200 chr7D 92.466 146 9 2 2864 3008 638091034 638090890 1.090000e-49 207.0
14 TraesCS2B01G436200 chr5D 98.413 126 2 0 2883 3008 127451980 127452105 3.900000e-54 222.0
15 TraesCS2B01G436200 chr5D 98.425 127 1 1 2882 3008 293426995 293426870 3.900000e-54 222.0
16 TraesCS2B01G436200 chr6B 91.892 148 11 1 2861 3008 20776937 20777083 3.930000e-49 206.0
17 TraesCS2B01G436200 chr3D 80.488 164 29 3 1441 1604 330062839 330062679 4.070000e-24 122.0
18 TraesCS2B01G436200 chr3B 81.013 158 27 3 1441 1598 427590210 427590056 4.070000e-24 122.0
19 TraesCS2B01G436200 chr1D 90.909 66 5 1 1 65 479201078 479201143 1.490000e-13 87.9
20 TraesCS2B01G436200 chr4A 76.129 155 31 5 1444 1595 604941019 604941170 3.220000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G436200 chr2B 626882281 626885288 3007 True 5555 5555 100.0000 1 3008 1 chr2B.!!$R2 3007
1 TraesCS2B01G436200 chr2B 626650858 626651901 1043 True 1192 1192 87.5950 1000 2025 1 chr2B.!!$R1 1025
2 TraesCS2B01G436200 chr2D 528588200 528591053 2853 True 2113 3651 94.1645 1 2884 2 chr2D.!!$R2 2883
3 TraesCS2B01G436200 chr2D 528472723 528473772 1049 True 1131 1131 86.5020 1000 2025 1 chr2D.!!$R1 1025
4 TraesCS2B01G436200 chr2A 673273442 673278206 4764 True 1427 2580 87.8885 313 2411 2 chr2A.!!$R2 2098
5 TraesCS2B01G436200 chr2A 673195087 673196134 1047 True 1181 1181 87.5120 1000 2016 1 chr2A.!!$R1 1016

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
147 156 0.392595 TGATGGAAGCTGAGCTGCTG 60.393 55.0 13.03 0.0 43.24 4.41 F
754 791 1.019673 CATGAAGCCATTCCACGGAG 58.980 55.0 0.00 0.0 34.28 4.63 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1080 1129 0.663568 GATCATCGTTAGCCGTCGGG 60.664 60.0 14.38 0.0 37.94 5.14 R
2530 5256 0.044092 TGGGAGGGAGTGGCAATCTA 59.956 55.0 15.16 0.0 0.00 1.98 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 2.435059 GCGACAAGCCTCACTCCC 60.435 66.667 0.00 0.00 40.81 4.30
35 36 4.200283 CTCACTCCCCTCGCTCGC 62.200 72.222 0.00 0.00 0.00 5.03
48 49 1.298859 CGCTCGCCAAAAGTTAGCCT 61.299 55.000 0.00 0.00 0.00 4.58
65 66 9.660180 AAGTTAGCCTTTCTCTTTATACTGAAG 57.340 33.333 0.00 0.00 0.00 3.02
66 67 7.766738 AGTTAGCCTTTCTCTTTATACTGAAGC 59.233 37.037 0.00 0.00 0.00 3.86
115 124 3.520862 GGCCATGCACGTGATGGG 61.521 66.667 30.83 23.51 40.80 4.00
116 125 3.520862 GCCATGCACGTGATGGGG 61.521 66.667 30.83 22.18 40.80 4.96
117 126 2.829914 CCATGCACGTGATGGGGG 60.830 66.667 26.47 14.98 37.33 5.40
118 127 2.271821 CATGCACGTGATGGGGGA 59.728 61.111 22.23 0.00 0.00 4.81
119 128 1.378382 CATGCACGTGATGGGGGAA 60.378 57.895 22.23 0.00 0.00 3.97
120 129 1.077501 ATGCACGTGATGGGGGAAG 60.078 57.895 22.23 0.00 0.00 3.46
121 130 3.134127 GCACGTGATGGGGGAAGC 61.134 66.667 22.23 0.00 0.00 3.86
122 131 2.350895 CACGTGATGGGGGAAGCA 59.649 61.111 10.90 0.00 0.00 3.91
123 132 1.303236 CACGTGATGGGGGAAGCAA 60.303 57.895 10.90 0.00 0.00 3.91
124 133 0.893270 CACGTGATGGGGGAAGCAAA 60.893 55.000 10.90 0.00 0.00 3.68
125 134 0.893727 ACGTGATGGGGGAAGCAAAC 60.894 55.000 0.00 0.00 0.00 2.93
126 135 0.609131 CGTGATGGGGGAAGCAAACT 60.609 55.000 0.00 0.00 0.00 2.66
127 136 1.632589 GTGATGGGGGAAGCAAACTT 58.367 50.000 0.00 0.00 39.43 2.66
128 137 1.970640 GTGATGGGGGAAGCAAACTTT 59.029 47.619 0.00 0.00 35.82 2.66
129 138 1.969923 TGATGGGGGAAGCAAACTTTG 59.030 47.619 0.00 0.00 35.82 2.77
130 139 2.247358 GATGGGGGAAGCAAACTTTGA 58.753 47.619 5.65 0.00 35.82 2.69
131 140 2.397044 TGGGGGAAGCAAACTTTGAT 57.603 45.000 5.65 0.00 35.82 2.57
147 156 0.392595 TGATGGAAGCTGAGCTGCTG 60.393 55.000 13.03 0.00 43.24 4.41
203 212 5.765176 AGCCGGACAATTTTGTTAAGTTAC 58.235 37.500 5.05 0.00 42.43 2.50
212 221 7.378461 ACAATTTTGTTAAGTTACACAGATGCG 59.622 33.333 0.00 0.00 38.47 4.73
215 224 4.242475 TGTTAAGTTACACAGATGCGGAG 58.758 43.478 0.00 0.00 0.00 4.63
241 250 4.942944 TGAGGTATAGAGTTGGAAGACCA 58.057 43.478 0.00 0.00 45.34 4.02
253 262 1.202545 GGAAGACCAGCTCCCGTATTC 60.203 57.143 4.61 4.61 35.97 1.75
255 264 1.794714 AGACCAGCTCCCGTATTCAT 58.205 50.000 0.00 0.00 0.00 2.57
256 265 1.414181 AGACCAGCTCCCGTATTCATG 59.586 52.381 0.00 0.00 0.00 3.07
259 268 1.414181 CCAGCTCCCGTATTCATGTCT 59.586 52.381 0.00 0.00 0.00 3.41
260 269 2.477825 CAGCTCCCGTATTCATGTCTG 58.522 52.381 0.00 0.00 0.00 3.51
261 270 1.414181 AGCTCCCGTATTCATGTCTGG 59.586 52.381 0.00 0.00 0.00 3.86
262 271 1.412710 GCTCCCGTATTCATGTCTGGA 59.587 52.381 0.00 0.00 0.00 3.86
263 272 2.803492 GCTCCCGTATTCATGTCTGGAC 60.803 54.545 0.00 0.00 0.00 4.02
265 274 2.835156 TCCCGTATTCATGTCTGGACAA 59.165 45.455 7.53 0.00 45.41 3.18
275 284 5.875224 TCATGTCTGGACAAATTGGTCTAA 58.125 37.500 12.74 1.36 45.41 2.10
276 285 6.484288 TCATGTCTGGACAAATTGGTCTAAT 58.516 36.000 12.74 0.00 45.41 1.73
305 314 8.696175 CAAATACCGTGTCCATTTTAAAAGTTC 58.304 33.333 6.79 0.00 0.00 3.01
344 353 2.035704 AGCTGATGGACGCTGAGAATAG 59.964 50.000 0.00 0.00 34.69 1.73
345 354 2.865670 GCTGATGGACGCTGAGAATAGG 60.866 54.545 0.00 0.00 0.00 2.57
346 355 1.688735 TGATGGACGCTGAGAATAGGG 59.311 52.381 0.00 0.00 36.75 3.53
374 385 9.892130 ACCCTTCAGTATTAAGAATGAAACTAG 57.108 33.333 13.27 2.88 0.00 2.57
399 416 7.985184 AGTGTATATTCCTTTTTGCGTATGAGA 59.015 33.333 0.00 0.00 0.00 3.27
404 421 6.627395 TTCCTTTTTGCGTATGAGAAAGAA 57.373 33.333 0.00 0.00 30.83 2.52
414 431 5.741982 GCGTATGAGAAAGAAAGAGAGAGAC 59.258 44.000 0.00 0.00 0.00 3.36
415 432 5.963004 CGTATGAGAAAGAAAGAGAGAGACG 59.037 44.000 0.00 0.00 0.00 4.18
490 515 5.414454 AGCCTTTCTGCGTGTCATAATAAAA 59.586 36.000 0.00 0.00 36.02 1.52
513 538 1.873698 TGGTAAAGTGTGAGCGGAAC 58.126 50.000 0.00 0.00 0.00 3.62
532 562 1.749063 ACGGTCGATGCTCTTGTCATA 59.251 47.619 0.00 0.00 0.00 2.15
583 613 3.194968 ACACGACTCCGGAAATATCTTGT 59.805 43.478 5.23 8.16 40.78 3.16
679 712 1.338105 TGCAGTAAACATCTCAGCGCT 60.338 47.619 2.64 2.64 0.00 5.92
725 758 3.307242 GCAAAATCTCAGGTACTACAGCG 59.693 47.826 0.00 0.00 36.02 5.18
754 791 1.019673 CATGAAGCCATTCCACGGAG 58.980 55.000 0.00 0.00 34.28 4.63
802 846 2.525629 TCAGAAGTGGGTCCCGCA 60.526 61.111 23.67 0.00 36.32 5.69
827 871 3.537874 CTAGGCCTTCCCGTCGGG 61.538 72.222 25.31 25.31 46.11 5.14
966 1015 6.102663 TCTTTCTTTCTCACGATTCTCATCC 58.897 40.000 0.00 0.00 0.00 3.51
985 1034 1.674817 CCACTGAAAGGCGAACCGTAT 60.675 52.381 0.00 0.00 42.76 3.06
1111 1163 1.027357 CGATGATCAGGGCCCTTTTG 58.973 55.000 26.10 13.30 0.00 2.44
1146 1198 4.335647 CCCGTGCTGCCACCTTCT 62.336 66.667 0.00 0.00 38.79 2.85
1311 1384 1.136305 CCGGTGATGATACAGTTCGGT 59.864 52.381 0.00 0.00 0.00 4.69
1316 1389 0.810031 ATGATACAGTTCGGTGGCGC 60.810 55.000 0.00 0.00 0.00 6.53
1950 2032 1.148273 GATGGGAGGCATGCCGTTA 59.852 57.895 30.50 18.36 40.55 3.18
2011 2093 6.018994 CCCGCAGCTTAGTGTTAGTTAATTAG 60.019 42.308 0.00 0.00 0.00 1.73
2151 4873 6.324819 CGTCTTGCTATCCATGAAAATGTTT 58.675 36.000 0.00 0.00 30.42 2.83
2169 4891 7.935338 AATGTTTTCAAGCTAGTGTTTGATG 57.065 32.000 7.11 0.00 41.69 3.07
2178 4900 7.488150 TCAAGCTAGTGTTTGATGTCTATTACG 59.512 37.037 0.00 0.00 38.24 3.18
2179 4901 6.864342 AGCTAGTGTTTGATGTCTATTACGT 58.136 36.000 0.00 0.00 0.00 3.57
2180 4902 6.752351 AGCTAGTGTTTGATGTCTATTACGTG 59.248 38.462 0.00 0.00 0.00 4.49
2181 4903 5.779806 AGTGTTTGATGTCTATTACGTGC 57.220 39.130 0.00 0.00 0.00 5.34
2230 4952 2.631160 TCACCCGTTGTTGTTCATCT 57.369 45.000 0.00 0.00 0.00 2.90
2264 4987 2.346847 CAGTCGGCTTTTCTTCTCGATG 59.653 50.000 0.00 0.00 32.46 3.84
2274 4997 6.404074 GCTTTTCTTCTCGATGGATGTTTGAT 60.404 38.462 0.00 0.00 0.00 2.57
2337 5060 1.001393 TTCGTTGGGGAGGGAATGC 60.001 57.895 0.00 0.00 0.00 3.56
2362 5086 0.100503 AACGTTGTTTGCTGGCAGTC 59.899 50.000 17.16 9.10 0.00 3.51
2370 5094 1.238439 TTGCTGGCAGTCTTAGTTGC 58.762 50.000 17.16 0.00 39.56 4.17
2428 5153 3.496331 TGTTGACAATTTCCTTCCTCCC 58.504 45.455 0.00 0.00 0.00 4.30
2439 5164 1.003696 CCTTCCTCCCAGAAACTGTCC 59.996 57.143 0.00 0.00 0.00 4.02
2457 5183 6.650120 ACTGTCCTACTCTTGTGAAGAAAAA 58.350 36.000 0.00 0.00 37.02 1.94
2472 5198 2.626266 AGAAAAATGTCAACCCCCGAAC 59.374 45.455 0.00 0.00 0.00 3.95
2497 5223 9.528018 ACAACTAAAACTACCATCAAAATGTTG 57.472 29.630 0.00 0.00 35.92 3.33
2516 5242 1.000396 GCAAATGCCACTCCCTCCT 60.000 57.895 0.00 0.00 34.31 3.69
2517 5243 1.318158 GCAAATGCCACTCCCTCCTG 61.318 60.000 0.00 0.00 34.31 3.86
2537 5263 3.762231 CGAACGTTCGCTAGATTGC 57.238 52.632 34.54 1.91 44.26 3.56
2538 5264 0.297820 CGAACGTTCGCTAGATTGCC 59.702 55.000 34.54 1.37 44.26 4.52
2539 5265 1.355971 GAACGTTCGCTAGATTGCCA 58.644 50.000 13.36 0.00 0.00 4.92
2540 5266 1.060698 GAACGTTCGCTAGATTGCCAC 59.939 52.381 13.36 0.00 0.00 5.01
2541 5267 0.246635 ACGTTCGCTAGATTGCCACT 59.753 50.000 0.00 0.00 0.00 4.00
2542 5268 0.924090 CGTTCGCTAGATTGCCACTC 59.076 55.000 0.00 0.00 0.00 3.51
2543 5269 1.291132 GTTCGCTAGATTGCCACTCC 58.709 55.000 0.00 0.00 0.00 3.85
2544 5270 0.178068 TTCGCTAGATTGCCACTCCC 59.822 55.000 0.00 0.00 0.00 4.30
2545 5271 0.687757 TCGCTAGATTGCCACTCCCT 60.688 55.000 0.00 0.00 0.00 4.20
2546 5272 0.249657 CGCTAGATTGCCACTCCCTC 60.250 60.000 0.00 0.00 0.00 4.30
2547 5273 0.107643 GCTAGATTGCCACTCCCTCC 59.892 60.000 0.00 0.00 0.00 4.30
2548 5274 0.761802 CTAGATTGCCACTCCCTCCC 59.238 60.000 0.00 0.00 0.00 4.30
2549 5275 0.044092 TAGATTGCCACTCCCTCCCA 59.956 55.000 0.00 0.00 0.00 4.37
2550 5276 1.225704 GATTGCCACTCCCTCCCAG 59.774 63.158 0.00 0.00 0.00 4.45
2551 5277 2.900671 GATTGCCACTCCCTCCCAGC 62.901 65.000 0.00 0.00 0.00 4.85
2554 5280 3.003173 CCACTCCCTCCCAGCGAA 61.003 66.667 0.00 0.00 0.00 4.70
2555 5281 2.266055 CACTCCCTCCCAGCGAAC 59.734 66.667 0.00 0.00 0.00 3.95
2556 5282 3.382832 ACTCCCTCCCAGCGAACG 61.383 66.667 0.00 0.00 0.00 3.95
2557 5283 3.382832 CTCCCTCCCAGCGAACGT 61.383 66.667 0.00 0.00 0.00 3.99
2558 5284 2.920912 TCCCTCCCAGCGAACGTT 60.921 61.111 0.00 0.00 0.00 3.99
2559 5285 2.434359 CCCTCCCAGCGAACGTTC 60.434 66.667 18.47 18.47 0.00 3.95
2632 5358 9.308000 TGATCCTTTATCTTTTGTACCACAAAT 57.692 29.630 5.38 0.00 38.84 2.32
2641 5367 8.641499 TCTTTTGTACCACAAATTTTTGCTAG 57.359 30.769 5.38 0.00 46.17 3.42
2686 5412 5.527214 TCAAAACAGTGGACAAGATGTAGTG 59.473 40.000 0.00 0.00 0.00 2.74
2884 5612 9.744468 AAGTTTATGTGTTTGGTTGAAAGATAC 57.256 29.630 0.00 0.00 0.00 2.24
2885 5613 9.131791 AGTTTATGTGTTTGGTTGAAAGATACT 57.868 29.630 0.00 0.00 0.00 2.12
2886 5614 9.394477 GTTTATGTGTTTGGTTGAAAGATACTC 57.606 33.333 0.00 0.00 0.00 2.59
2887 5615 6.575162 ATGTGTTTGGTTGAAAGATACTCC 57.425 37.500 0.00 0.00 0.00 3.85
2888 5616 4.825085 TGTGTTTGGTTGAAAGATACTCCC 59.175 41.667 0.00 0.00 0.00 4.30
2889 5617 5.070685 GTGTTTGGTTGAAAGATACTCCCT 58.929 41.667 0.00 0.00 0.00 4.20
2890 5618 5.181433 GTGTTTGGTTGAAAGATACTCCCTC 59.819 44.000 0.00 0.00 0.00 4.30
2891 5619 4.569719 TTGGTTGAAAGATACTCCCTCC 57.430 45.455 0.00 0.00 0.00 4.30
2892 5620 2.500098 TGGTTGAAAGATACTCCCTCCG 59.500 50.000 0.00 0.00 0.00 4.63
2893 5621 2.500504 GGTTGAAAGATACTCCCTCCGT 59.499 50.000 0.00 0.00 0.00 4.69
2894 5622 3.055312 GGTTGAAAGATACTCCCTCCGTT 60.055 47.826 0.00 0.00 0.00 4.44
2895 5623 4.182339 GTTGAAAGATACTCCCTCCGTTC 58.818 47.826 0.00 0.00 0.00 3.95
2896 5624 2.764572 TGAAAGATACTCCCTCCGTTCC 59.235 50.000 0.00 0.00 0.00 3.62
2897 5625 2.850695 AAGATACTCCCTCCGTTCCT 57.149 50.000 0.00 0.00 0.00 3.36
2898 5626 3.967467 AAGATACTCCCTCCGTTCCTA 57.033 47.619 0.00 0.00 0.00 2.94
2899 5627 3.967467 AGATACTCCCTCCGTTCCTAA 57.033 47.619 0.00 0.00 0.00 2.69
2900 5628 4.261411 AGATACTCCCTCCGTTCCTAAA 57.739 45.455 0.00 0.00 0.00 1.85
2901 5629 4.817286 AGATACTCCCTCCGTTCCTAAAT 58.183 43.478 0.00 0.00 0.00 1.40
2902 5630 5.961897 AGATACTCCCTCCGTTCCTAAATA 58.038 41.667 0.00 0.00 0.00 1.40
2903 5631 6.563163 AGATACTCCCTCCGTTCCTAAATAT 58.437 40.000 0.00 0.00 0.00 1.28
2904 5632 7.706674 AGATACTCCCTCCGTTCCTAAATATA 58.293 38.462 0.00 0.00 0.00 0.86
2905 5633 8.175431 AGATACTCCCTCCGTTCCTAAATATAA 58.825 37.037 0.00 0.00 0.00 0.98
2906 5634 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
2907 5635 6.141790 ACTCCCTCCGTTCCTAAATATAAGT 58.858 40.000 0.00 0.00 0.00 2.24
2908 5636 6.267242 ACTCCCTCCGTTCCTAAATATAAGTC 59.733 42.308 0.00 0.00 0.00 3.01
2909 5637 6.379579 TCCCTCCGTTCCTAAATATAAGTCT 58.620 40.000 0.00 0.00 0.00 3.24
2910 5638 6.842807 TCCCTCCGTTCCTAAATATAAGTCTT 59.157 38.462 0.00 0.00 0.00 3.01
2911 5639 7.346436 TCCCTCCGTTCCTAAATATAAGTCTTT 59.654 37.037 0.00 0.00 0.00 2.52
2912 5640 7.441458 CCCTCCGTTCCTAAATATAAGTCTTTG 59.559 40.741 0.00 0.00 0.00 2.77
2913 5641 7.985752 CCTCCGTTCCTAAATATAAGTCTTTGT 59.014 37.037 0.00 0.00 0.00 2.83
2929 5657 7.962995 AGTCTTTGTAGAGATTCCACTATGA 57.037 36.000 0.00 0.00 0.00 2.15
2930 5658 8.367660 AGTCTTTGTAGAGATTCCACTATGAA 57.632 34.615 0.00 0.00 0.00 2.57
2931 5659 8.254508 AGTCTTTGTAGAGATTCCACTATGAAC 58.745 37.037 0.00 0.00 0.00 3.18
2932 5660 7.492994 GTCTTTGTAGAGATTCCACTATGAACC 59.507 40.741 0.00 0.00 0.00 3.62
2933 5661 6.867519 TTGTAGAGATTCCACTATGAACCA 57.132 37.500 0.00 0.00 0.00 3.67
2934 5662 6.222038 TGTAGAGATTCCACTATGAACCAC 57.778 41.667 0.00 0.00 0.00 4.16
2935 5663 5.719563 TGTAGAGATTCCACTATGAACCACA 59.280 40.000 0.00 0.00 0.00 4.17
2936 5664 5.965033 AGAGATTCCACTATGAACCACAT 57.035 39.130 0.00 0.00 42.39 3.21
2937 5665 7.563556 TGTAGAGATTCCACTATGAACCACATA 59.436 37.037 0.00 0.00 40.07 2.29
2938 5666 6.821388 AGAGATTCCACTATGAACCACATAC 58.179 40.000 0.00 0.00 40.07 2.39
2939 5667 5.601662 AGATTCCACTATGAACCACATACG 58.398 41.667 0.00 0.00 40.07 3.06
2940 5668 3.812156 TCCACTATGAACCACATACGG 57.188 47.619 0.00 0.00 40.07 4.02
2941 5669 3.367321 TCCACTATGAACCACATACGGA 58.633 45.455 0.00 0.00 40.07 4.69
2942 5670 3.964688 TCCACTATGAACCACATACGGAT 59.035 43.478 0.00 0.00 40.07 4.18
2943 5671 4.058124 CCACTATGAACCACATACGGATG 58.942 47.826 5.94 5.94 40.07 3.51
2945 5673 5.221362 CCACTATGAACCACATACGGATGTA 60.221 44.000 14.23 0.00 44.82 2.29
2946 5674 6.455647 CACTATGAACCACATACGGATGTAT 58.544 40.000 14.23 5.54 44.82 2.29
2947 5675 7.309560 CCACTATGAACCACATACGGATGTATA 60.310 40.741 14.23 6.48 44.82 1.47
2948 5676 8.251026 CACTATGAACCACATACGGATGTATAT 58.749 37.037 14.23 1.68 44.82 0.86
2949 5677 9.470399 ACTATGAACCACATACGGATGTATATA 57.530 33.333 14.23 7.10 44.82 0.86
2950 5678 9.952188 CTATGAACCACATACGGATGTATATAG 57.048 37.037 14.23 12.28 44.82 1.31
2951 5679 8.589701 ATGAACCACATACGGATGTATATAGA 57.410 34.615 14.23 0.00 44.82 1.98
2952 5680 8.589701 TGAACCACATACGGATGTATATAGAT 57.410 34.615 14.23 0.00 44.82 1.98
2953 5681 8.466798 TGAACCACATACGGATGTATATAGATG 58.533 37.037 14.23 0.00 44.82 2.90
2954 5682 6.806751 ACCACATACGGATGTATATAGATGC 58.193 40.000 14.23 0.00 44.82 3.91
2955 5683 6.379988 ACCACATACGGATGTATATAGATGCA 59.620 38.462 14.23 0.00 44.82 3.96
2956 5684 7.069950 ACCACATACGGATGTATATAGATGCAT 59.930 37.037 14.23 0.00 44.82 3.96
2957 5685 7.928167 CCACATACGGATGTATATAGATGCATT 59.072 37.037 14.23 1.23 44.82 3.56
2958 5686 9.317936 CACATACGGATGTATATAGATGCATTT 57.682 33.333 14.23 0.00 44.82 2.32
2959 5687 9.890629 ACATACGGATGTATATAGATGCATTTT 57.109 29.630 12.79 0.00 44.77 1.82
2985 5713 8.937634 AAATGTAGATTCATTCAATTTGCTCC 57.062 30.769 0.00 0.00 37.09 4.70
2986 5714 6.122850 TGTAGATTCATTCAATTTGCTCCG 57.877 37.500 0.00 0.00 0.00 4.63
2987 5715 5.647658 TGTAGATTCATTCAATTTGCTCCGT 59.352 36.000 0.00 0.00 0.00 4.69
2988 5716 6.821160 TGTAGATTCATTCAATTTGCTCCGTA 59.179 34.615 0.00 0.00 0.00 4.02
2989 5717 6.949352 AGATTCATTCAATTTGCTCCGTAT 57.051 33.333 0.00 0.00 0.00 3.06
2990 5718 6.732154 AGATTCATTCAATTTGCTCCGTATG 58.268 36.000 0.00 0.00 0.00 2.39
2991 5719 5.895636 TTCATTCAATTTGCTCCGTATGT 57.104 34.783 0.00 0.00 0.00 2.29
2992 5720 6.993786 TTCATTCAATTTGCTCCGTATGTA 57.006 33.333 0.00 0.00 0.00 2.29
2993 5721 6.603237 TCATTCAATTTGCTCCGTATGTAG 57.397 37.500 0.00 0.00 0.00 2.74
2994 5722 6.112734 TCATTCAATTTGCTCCGTATGTAGT 58.887 36.000 0.00 0.00 0.00 2.73
2995 5723 6.257849 TCATTCAATTTGCTCCGTATGTAGTC 59.742 38.462 0.00 0.00 0.00 2.59
2996 5724 4.439057 TCAATTTGCTCCGTATGTAGTCC 58.561 43.478 0.00 0.00 0.00 3.85
2997 5725 4.081365 TCAATTTGCTCCGTATGTAGTCCA 60.081 41.667 0.00 0.00 0.00 4.02
2998 5726 2.953466 TTGCTCCGTATGTAGTCCAC 57.047 50.000 0.00 0.00 0.00 4.02
2999 5727 1.108776 TGCTCCGTATGTAGTCCACC 58.891 55.000 0.00 0.00 0.00 4.61
3000 5728 1.341679 TGCTCCGTATGTAGTCCACCT 60.342 52.381 0.00 0.00 0.00 4.00
3001 5729 2.092267 TGCTCCGTATGTAGTCCACCTA 60.092 50.000 0.00 0.00 0.00 3.08
3002 5730 2.553172 GCTCCGTATGTAGTCCACCTAG 59.447 54.545 0.00 0.00 0.00 3.02
3003 5731 3.818180 CTCCGTATGTAGTCCACCTAGT 58.182 50.000 0.00 0.00 0.00 2.57
3004 5732 3.548770 TCCGTATGTAGTCCACCTAGTG 58.451 50.000 0.00 0.00 0.00 2.74
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
14 15 3.394836 GCGAGGGGAGTGAGGCTT 61.395 66.667 0.00 0.00 0.00 4.35
15 16 4.390556 AGCGAGGGGAGTGAGGCT 62.391 66.667 0.00 0.00 0.00 4.58
26 27 0.721718 CTAACTTTTGGCGAGCGAGG 59.278 55.000 0.00 0.00 0.00 4.63
65 66 9.086336 ACAACACAAGCATTTATTATGTTATGC 57.914 29.630 0.00 0.00 42.76 3.14
78 87 2.475818 CATGCACACAACACAAGCATT 58.524 42.857 0.00 0.00 42.76 3.56
109 118 1.969923 CAAAGTTTGCTTCCCCCATCA 59.030 47.619 1.96 0.00 33.01 3.07
115 124 3.862264 GCTTCCATCAAAGTTTGCTTCCC 60.862 47.826 10.90 0.00 33.01 3.97
116 125 3.006217 AGCTTCCATCAAAGTTTGCTTCC 59.994 43.478 10.90 0.00 33.01 3.46
117 126 3.985925 CAGCTTCCATCAAAGTTTGCTTC 59.014 43.478 10.90 0.00 33.01 3.86
118 127 3.638160 TCAGCTTCCATCAAAGTTTGCTT 59.362 39.130 10.90 0.00 36.30 3.91
119 128 3.225104 TCAGCTTCCATCAAAGTTTGCT 58.775 40.909 10.90 0.00 0.00 3.91
120 129 3.572584 CTCAGCTTCCATCAAAGTTTGC 58.427 45.455 10.90 0.00 0.00 3.68
121 130 3.255149 AGCTCAGCTTCCATCAAAGTTTG 59.745 43.478 9.44 9.44 33.89 2.93
122 131 3.255149 CAGCTCAGCTTCCATCAAAGTTT 59.745 43.478 0.00 0.00 36.40 2.66
123 132 2.818432 CAGCTCAGCTTCCATCAAAGTT 59.182 45.455 0.00 0.00 36.40 2.66
124 133 2.434428 CAGCTCAGCTTCCATCAAAGT 58.566 47.619 0.00 0.00 36.40 2.66
125 134 1.132643 GCAGCTCAGCTTCCATCAAAG 59.867 52.381 0.00 0.00 36.40 2.77
126 135 1.171308 GCAGCTCAGCTTCCATCAAA 58.829 50.000 0.00 0.00 36.40 2.69
127 136 0.327259 AGCAGCTCAGCTTCCATCAA 59.673 50.000 0.00 0.00 43.70 2.57
128 137 0.392595 CAGCAGCTCAGCTTCCATCA 60.393 55.000 0.00 0.00 43.70 3.07
129 138 1.716826 GCAGCAGCTCAGCTTCCATC 61.717 60.000 0.00 0.00 43.70 3.51
130 139 1.749638 GCAGCAGCTCAGCTTCCAT 60.750 57.895 0.00 0.00 43.70 3.41
131 140 2.359602 GCAGCAGCTCAGCTTCCA 60.360 61.111 0.00 0.00 43.70 3.53
147 156 2.180017 CAACTTCCGCCATGCAGC 59.820 61.111 0.00 0.00 0.00 5.25
178 187 5.270893 ACTTAACAAAATTGTCCGGCTTT 57.729 34.783 0.00 0.00 41.31 3.51
182 191 6.496571 TGTGTAACTTAACAAAATTGTCCGG 58.503 36.000 0.00 0.00 38.00 5.14
203 212 1.938577 CCTCAAATCTCCGCATCTGTG 59.061 52.381 0.00 0.00 0.00 3.66
212 221 6.732896 TCCAACTCTATACCTCAAATCTCC 57.267 41.667 0.00 0.00 0.00 3.71
215 224 6.987404 GGTCTTCCAACTCTATACCTCAAATC 59.013 42.308 0.00 0.00 0.00 2.17
241 250 1.414181 CCAGACATGAATACGGGAGCT 59.586 52.381 0.00 0.00 0.00 4.09
248 257 6.375455 AGACCAATTTGTCCAGACATGAATAC 59.625 38.462 0.00 0.00 41.52 1.89
253 262 6.375174 TCATTAGACCAATTTGTCCAGACATG 59.625 38.462 6.07 0.00 41.52 3.21
255 264 5.705441 GTCATTAGACCAATTTGTCCAGACA 59.295 40.000 6.07 0.00 38.89 3.41
256 265 5.705441 TGTCATTAGACCAATTTGTCCAGAC 59.295 40.000 6.07 9.29 44.33 3.51
259 268 6.968263 TTTGTCATTAGACCAATTTGTCCA 57.032 33.333 6.07 0.00 44.33 4.02
260 269 7.973944 GGTATTTGTCATTAGACCAATTTGTCC 59.026 37.037 6.07 0.00 44.33 4.02
261 270 7.696453 CGGTATTTGTCATTAGACCAATTTGTC 59.304 37.037 1.42 1.42 44.33 3.18
262 271 7.175990 ACGGTATTTGTCATTAGACCAATTTGT 59.824 33.333 1.12 0.00 44.33 2.83
263 272 7.484641 CACGGTATTTGTCATTAGACCAATTTG 59.515 37.037 1.12 0.00 44.33 2.32
265 274 6.657541 ACACGGTATTTGTCATTAGACCAATT 59.342 34.615 1.12 0.00 44.33 2.32
275 284 5.975693 AAAATGGACACGGTATTTGTCAT 57.024 34.783 5.60 0.00 44.47 3.06
276 285 6.879276 TTAAAATGGACACGGTATTTGTCA 57.121 33.333 5.60 0.00 44.47 3.58
305 314 1.772182 CTTAGGGCATCTCTAACGCG 58.228 55.000 3.53 3.53 0.00 6.01
344 353 6.659824 TCATTCTTAATACTGAAGGGTTCCC 58.340 40.000 0.00 0.00 0.00 3.97
345 354 8.459635 GTTTCATTCTTAATACTGAAGGGTTCC 58.540 37.037 0.00 0.00 0.00 3.62
346 355 9.232473 AGTTTCATTCTTAATACTGAAGGGTTC 57.768 33.333 0.00 0.00 0.00 3.62
374 385 8.138365 TCTCATACGCAAAAAGGAATATACAC 57.862 34.615 0.00 0.00 0.00 2.90
391 408 5.963004 CGTCTCTCTCTTTCTTTCTCATACG 59.037 44.000 0.00 0.00 0.00 3.06
399 416 1.000163 TGCGCGTCTCTCTCTTTCTTT 60.000 47.619 8.43 0.00 0.00 2.52
404 421 1.442857 CGTTGCGCGTCTCTCTCTT 60.443 57.895 8.43 0.00 35.54 2.85
414 431 0.522286 TTGCCATTAATCGTTGCGCG 60.522 50.000 0.00 0.00 43.01 6.86
415 432 1.191096 CTTGCCATTAATCGTTGCGC 58.809 50.000 0.00 0.00 0.00 6.09
426 451 2.814805 ACATACCAGAGCTTGCCATT 57.185 45.000 0.00 0.00 0.00 3.16
490 515 3.482436 TCCGCTCACACTTTACCAAAAT 58.518 40.909 0.00 0.00 0.00 1.82
513 538 2.033424 TCTATGACAAGAGCATCGACCG 59.967 50.000 0.00 0.00 42.67 4.79
532 562 1.146930 CAGGGGTGCGCATACATCT 59.853 57.895 15.91 8.69 0.00 2.90
583 613 9.665719 TGATAATTTTGACTTGCTAGTACATGA 57.334 29.630 0.00 0.00 33.84 3.07
679 712 4.776837 ACCCACATCCTATTCAAATTTGCA 59.223 37.500 13.54 2.71 0.00 4.08
725 758 1.438651 TGGCTTCATGTCGCTGTTAC 58.561 50.000 8.44 0.00 0.00 2.50
754 791 2.191802 TCGTACTCGATCTCGTCACTC 58.808 52.381 0.00 0.00 41.35 3.51
802 846 0.480252 GGGAAGGCCTAGGCATGAAT 59.520 55.000 34.09 13.86 44.11 2.57
827 871 1.750778 CCAGCTGAGAGAGAAGGAGAC 59.249 57.143 17.39 0.00 0.00 3.36
966 1015 1.722011 ATACGGTTCGCCTTTCAGTG 58.278 50.000 0.00 0.00 34.30 3.66
985 1034 4.235079 ACTCCATGGTGCTTATGCTTAA 57.765 40.909 12.58 0.00 40.48 1.85
1080 1129 0.663568 GATCATCGTTAGCCGTCGGG 60.664 60.000 14.38 0.00 37.94 5.14
1093 1142 1.406903 CCAAAAGGGCCCTGATCATC 58.593 55.000 29.50 0.00 0.00 2.92
1208 1272 2.354303 CCCATGTAACCTTGCGTCTGTA 60.354 50.000 0.00 0.00 0.00 2.74
1316 1389 4.135153 CCCTCACAGGAGACGGCG 62.135 72.222 4.80 4.80 44.26 6.46
2011 2093 5.784177 TCTATCGCTTAATGAACCATCCTC 58.216 41.667 0.00 0.00 0.00 3.71
2151 4873 9.151471 GTAATAGACATCAAACACTAGCTTGAA 57.849 33.333 1.04 0.00 33.90 2.69
2180 4902 4.156313 ACAGTGGTTGTTGCACTGATGC 62.156 50.000 7.59 0.00 46.55 3.91
2181 4903 1.677576 ACAGTGGTTGTTGCACTGATG 59.322 47.619 7.59 0.00 46.55 3.07
2230 4952 3.482436 AGCCGACTGTCCAATTTAAACA 58.518 40.909 1.55 0.00 0.00 2.83
2274 4997 7.069826 ACCCAAAAAGAAAGAGAATCATGTTCA 59.930 33.333 9.64 0.00 37.82 3.18
2337 5060 2.192624 CCAGCAAACAACGTTCTTTGG 58.807 47.619 24.30 10.21 0.00 3.28
2362 5086 1.269166 AATCTCGCGTCGCAACTAAG 58.731 50.000 18.75 6.17 0.00 2.18
2370 5094 2.222707 TGCAATTGTTAATCTCGCGTCG 60.223 45.455 5.77 0.00 0.00 5.12
2428 5153 5.201713 TCACAAGAGTAGGACAGTTTCTG 57.798 43.478 0.00 0.00 37.52 3.02
2439 5164 7.857885 GGTTGACATTTTTCTTCACAAGAGTAG 59.142 37.037 0.00 0.00 39.03 2.57
2457 5183 0.476771 AGTTGTTCGGGGGTTGACAT 59.523 50.000 0.00 0.00 0.00 3.06
2472 5198 8.977505 CCAACATTTTGATGGTAGTTTTAGTTG 58.022 33.333 0.00 0.00 35.80 3.16
2507 5233 3.382832 CGTTCGCCAGGAGGGAGT 61.383 66.667 0.00 0.00 40.01 3.85
2528 5254 0.107643 GGAGGGAGTGGCAATCTAGC 59.892 60.000 15.16 4.15 0.00 3.42
2530 5256 0.044092 TGGGAGGGAGTGGCAATCTA 59.956 55.000 15.16 0.00 0.00 1.98
2531 5257 1.229951 TGGGAGGGAGTGGCAATCT 60.230 57.895 15.16 0.00 0.00 2.40
2532 5258 1.225704 CTGGGAGGGAGTGGCAATC 59.774 63.158 6.36 6.36 0.00 2.67
2533 5259 2.988839 GCTGGGAGGGAGTGGCAAT 61.989 63.158 0.00 0.00 0.00 3.56
2534 5260 3.650950 GCTGGGAGGGAGTGGCAA 61.651 66.667 0.00 0.00 0.00 4.52
2537 5263 3.003173 TTCGCTGGGAGGGAGTGG 61.003 66.667 0.00 0.00 38.45 4.00
2538 5264 2.266055 GTTCGCTGGGAGGGAGTG 59.734 66.667 0.00 0.00 38.45 3.51
2539 5265 3.382832 CGTTCGCTGGGAGGGAGT 61.383 66.667 0.00 0.00 38.45 3.85
2540 5266 2.837371 GAACGTTCGCTGGGAGGGAG 62.837 65.000 13.36 0.00 38.45 4.30
2541 5267 2.920912 AACGTTCGCTGGGAGGGA 60.921 61.111 0.00 0.00 35.23 4.20
2542 5268 2.434359 GAACGTTCGCTGGGAGGG 60.434 66.667 13.36 0.00 0.00 4.30
2543 5269 2.809601 CGAACGTTCGCTGGGAGG 60.810 66.667 34.54 9.32 44.26 4.30
2552 5278 3.066481 ACCCTCTTATCTAGCGAACGTTC 59.934 47.826 18.47 18.47 0.00 3.95
2553 5279 3.022406 ACCCTCTTATCTAGCGAACGTT 58.978 45.455 0.00 0.00 0.00 3.99
2554 5280 2.617774 GACCCTCTTATCTAGCGAACGT 59.382 50.000 0.00 0.00 0.00 3.99
2555 5281 2.030981 GGACCCTCTTATCTAGCGAACG 60.031 54.545 0.00 0.00 0.00 3.95
2556 5282 3.224269 AGGACCCTCTTATCTAGCGAAC 58.776 50.000 0.00 0.00 0.00 3.95
2557 5283 3.596940 AGGACCCTCTTATCTAGCGAA 57.403 47.619 0.00 0.00 0.00 4.70
2558 5284 3.488363 GAAGGACCCTCTTATCTAGCGA 58.512 50.000 0.00 0.00 0.00 4.93
2559 5285 2.559231 GGAAGGACCCTCTTATCTAGCG 59.441 54.545 0.00 0.00 0.00 4.26
2663 5389 5.296780 ACACTACATCTTGTCCACTGTTTTG 59.703 40.000 0.00 0.00 0.00 2.44
2884 5612 6.494146 AGACTTATATTTAGGAACGGAGGGAG 59.506 42.308 0.00 0.00 0.00 4.30
2885 5613 6.379579 AGACTTATATTTAGGAACGGAGGGA 58.620 40.000 0.00 0.00 0.00 4.20
2886 5614 6.667558 AGACTTATATTTAGGAACGGAGGG 57.332 41.667 0.00 0.00 0.00 4.30
2887 5615 7.985752 ACAAAGACTTATATTTAGGAACGGAGG 59.014 37.037 0.00 0.00 0.00 4.30
2888 5616 8.943909 ACAAAGACTTATATTTAGGAACGGAG 57.056 34.615 0.00 0.00 0.00 4.63
2903 5631 9.475620 TCATAGTGGAATCTCTACAAAGACTTA 57.524 33.333 0.00 0.00 29.47 2.24
2904 5632 8.367660 TCATAGTGGAATCTCTACAAAGACTT 57.632 34.615 0.00 0.00 29.47 3.01
2905 5633 7.962995 TCATAGTGGAATCTCTACAAAGACT 57.037 36.000 0.00 0.00 29.47 3.24
2906 5634 7.492994 GGTTCATAGTGGAATCTCTACAAAGAC 59.507 40.741 0.00 0.00 29.47 3.01
2907 5635 7.180229 TGGTTCATAGTGGAATCTCTACAAAGA 59.820 37.037 0.00 0.00 29.47 2.52
2908 5636 7.278868 GTGGTTCATAGTGGAATCTCTACAAAG 59.721 40.741 0.00 0.00 29.47 2.77
2909 5637 7.103641 GTGGTTCATAGTGGAATCTCTACAAA 58.896 38.462 0.00 0.00 29.47 2.83
2910 5638 6.212589 TGTGGTTCATAGTGGAATCTCTACAA 59.787 38.462 0.00 0.00 29.47 2.41
2911 5639 5.719563 TGTGGTTCATAGTGGAATCTCTACA 59.280 40.000 0.00 0.00 29.47 2.74
2912 5640 6.222038 TGTGGTTCATAGTGGAATCTCTAC 57.778 41.667 0.00 0.00 0.00 2.59
2913 5641 7.255486 CGTATGTGGTTCATAGTGGAATCTCTA 60.255 40.741 0.00 0.00 39.36 2.43
2914 5642 5.965033 ATGTGGTTCATAGTGGAATCTCT 57.035 39.130 0.00 0.00 34.67 3.10
2915 5643 5.692204 CGTATGTGGTTCATAGTGGAATCTC 59.308 44.000 0.00 0.00 39.36 2.75
2916 5644 5.453339 CCGTATGTGGTTCATAGTGGAATCT 60.453 44.000 0.00 0.00 39.36 2.40
2917 5645 4.750098 CCGTATGTGGTTCATAGTGGAATC 59.250 45.833 0.00 0.00 39.36 2.52
2918 5646 4.407621 TCCGTATGTGGTTCATAGTGGAAT 59.592 41.667 0.00 0.00 39.60 3.01
2919 5647 3.770388 TCCGTATGTGGTTCATAGTGGAA 59.230 43.478 0.00 0.00 39.60 3.53
2920 5648 3.367321 TCCGTATGTGGTTCATAGTGGA 58.633 45.455 0.00 0.00 39.94 4.02
2921 5649 3.812156 TCCGTATGTGGTTCATAGTGG 57.188 47.619 0.00 0.00 39.36 4.00
2922 5650 4.693283 ACATCCGTATGTGGTTCATAGTG 58.307 43.478 0.00 0.00 44.79 2.74
2923 5651 6.665992 ATACATCCGTATGTGGTTCATAGT 57.334 37.500 3.56 0.00 45.99 2.12
2924 5652 9.952188 CTATATACATCCGTATGTGGTTCATAG 57.048 37.037 3.56 0.80 45.99 2.23
2925 5653 9.689501 TCTATATACATCCGTATGTGGTTCATA 57.310 33.333 3.56 0.00 45.99 2.15
2926 5654 8.589701 TCTATATACATCCGTATGTGGTTCAT 57.410 34.615 3.56 0.00 45.99 2.57
2927 5655 8.466798 CATCTATATACATCCGTATGTGGTTCA 58.533 37.037 3.56 0.00 45.99 3.18
2928 5656 7.435488 GCATCTATATACATCCGTATGTGGTTC 59.565 40.741 3.56 0.00 45.99 3.62
2929 5657 7.093509 TGCATCTATATACATCCGTATGTGGTT 60.094 37.037 3.56 0.00 45.99 3.67
2930 5658 6.379988 TGCATCTATATACATCCGTATGTGGT 59.620 38.462 3.56 0.00 45.99 4.16
2931 5659 6.805713 TGCATCTATATACATCCGTATGTGG 58.194 40.000 3.56 0.00 45.99 4.17
2932 5660 8.877808 AATGCATCTATATACATCCGTATGTG 57.122 34.615 3.56 0.00 45.99 3.21
2960 5688 7.703621 CGGAGCAAATTGAATGAATCTACATTT 59.296 33.333 0.00 0.00 40.03 2.32
2961 5689 7.148018 ACGGAGCAAATTGAATGAATCTACATT 60.148 33.333 0.00 0.00 42.19 2.71
2962 5690 6.319658 ACGGAGCAAATTGAATGAATCTACAT 59.680 34.615 0.00 0.00 0.00 2.29
2963 5691 5.647658 ACGGAGCAAATTGAATGAATCTACA 59.352 36.000 0.00 0.00 0.00 2.74
2964 5692 6.124088 ACGGAGCAAATTGAATGAATCTAC 57.876 37.500 0.00 0.00 0.00 2.59
2965 5693 7.498900 ACATACGGAGCAAATTGAATGAATCTA 59.501 33.333 0.00 0.00 0.00 1.98
2966 5694 6.319658 ACATACGGAGCAAATTGAATGAATCT 59.680 34.615 0.00 0.00 0.00 2.40
2967 5695 6.498304 ACATACGGAGCAAATTGAATGAATC 58.502 36.000 0.00 0.00 0.00 2.52
2968 5696 6.455360 ACATACGGAGCAAATTGAATGAAT 57.545 33.333 0.00 0.00 0.00 2.57
2969 5697 5.895636 ACATACGGAGCAAATTGAATGAA 57.104 34.783 0.00 0.00 0.00 2.57
2970 5698 6.112734 ACTACATACGGAGCAAATTGAATGA 58.887 36.000 0.00 0.00 0.00 2.57
2971 5699 6.363577 ACTACATACGGAGCAAATTGAATG 57.636 37.500 0.00 0.00 0.00 2.67
2972 5700 5.527582 GGACTACATACGGAGCAAATTGAAT 59.472 40.000 0.00 0.00 0.00 2.57
2973 5701 4.873827 GGACTACATACGGAGCAAATTGAA 59.126 41.667 0.00 0.00 0.00 2.69
2974 5702 4.081365 TGGACTACATACGGAGCAAATTGA 60.081 41.667 0.00 0.00 0.00 2.57
2975 5703 4.034048 GTGGACTACATACGGAGCAAATTG 59.966 45.833 0.00 0.00 0.00 2.32
2976 5704 4.189231 GTGGACTACATACGGAGCAAATT 58.811 43.478 0.00 0.00 0.00 1.82
2977 5705 3.431766 GGTGGACTACATACGGAGCAAAT 60.432 47.826 0.00 0.00 0.00 2.32
2978 5706 2.093869 GGTGGACTACATACGGAGCAAA 60.094 50.000 0.00 0.00 0.00 3.68
2979 5707 1.479323 GGTGGACTACATACGGAGCAA 59.521 52.381 0.00 0.00 0.00 3.91
2980 5708 1.108776 GGTGGACTACATACGGAGCA 58.891 55.000 0.00 0.00 0.00 4.26
2981 5709 1.400737 AGGTGGACTACATACGGAGC 58.599 55.000 0.00 0.00 0.00 4.70
2982 5710 3.564644 CACTAGGTGGACTACATACGGAG 59.435 52.174 0.00 0.00 0.00 4.63
2983 5711 3.548770 CACTAGGTGGACTACATACGGA 58.451 50.000 0.00 0.00 0.00 4.69
2984 5712 3.984508 CACTAGGTGGACTACATACGG 57.015 52.381 0.00 0.00 0.00 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.