Multiple sequence alignment - TraesCS2B01G435900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G435900 chr2B 100.000 4204 0 0 1 4204 626156681 626152478 0.000000e+00 7764
1 TraesCS2B01G435900 chr2B 91.760 801 45 8 3414 4202 652826122 652826913 0.000000e+00 1094
2 TraesCS2B01G435900 chr2B 86.792 159 19 2 2726 2883 151731459 151731302 4.320000e-40 176
3 TraesCS2B01G435900 chr2A 89.125 2492 147 48 814 3241 672953154 672950723 0.000000e+00 2987
4 TraesCS2B01G435900 chr2A 83.150 546 49 21 191 722 672953940 672953424 3.830000e-125 459
5 TraesCS2B01G435900 chr2A 88.889 144 14 2 3274 3415 672950076 672949933 4.320000e-40 176
6 TraesCS2B01G435900 chr2D 88.620 1986 136 50 1234 3167 528332115 528330168 0.000000e+00 2333
7 TraesCS2B01G435900 chr2D 81.488 1102 85 47 132 1204 528333184 528332173 0.000000e+00 795
8 TraesCS2B01G435900 chr4A 93.392 802 39 4 3416 4204 667015739 667014939 0.000000e+00 1175
9 TraesCS2B01G435900 chr4A 93.542 480 24 7 3726 4204 740414067 740413594 0.000000e+00 708
10 TraesCS2B01G435900 chr6B 90.738 799 43 7 3416 4201 665427162 665427942 0.000000e+00 1037
11 TraesCS2B01G435900 chr6B 88.752 809 43 12 3407 4201 200016502 200017276 0.000000e+00 946
12 TraesCS2B01G435900 chr6B 93.776 482 26 4 3720 4201 718728715 718729192 0.000000e+00 721
13 TraesCS2B01G435900 chr6B 92.276 479 32 5 3726 4204 94698375 94697902 0.000000e+00 675
14 TraesCS2B01G435900 chr6B 79.114 632 101 20 2073 2687 83597433 83596816 1.410000e-109 407
15 TraesCS2B01G435900 chr6B 86.164 159 20 2 2726 2883 83596811 83596654 2.010000e-38 171
16 TraesCS2B01G435900 chr6B 91.150 113 6 4 3413 3522 157236743 157236632 2.620000e-32 150
17 TraesCS2B01G435900 chr6B 91.429 105 7 2 3420 3522 88570437 88570333 4.380000e-30 143
18 TraesCS2B01G435900 chr4B 93.971 481 22 7 3726 4204 382418336 382417861 0.000000e+00 721
19 TraesCS2B01G435900 chr4B 82.823 588 61 28 3416 3996 72881357 72880803 1.360000e-134 490
20 TraesCS2B01G435900 chr4B 79.430 632 98 18 2073 2687 485429858 485429242 6.500000e-113 418
21 TraesCS2B01G435900 chr4B 88.983 118 13 0 2766 2883 485429159 485429042 3.390000e-31 147
22 TraesCS2B01G435900 chr7B 92.739 482 28 5 3720 4201 201419632 201420106 0.000000e+00 689
23 TraesCS2B01G435900 chr1B 92.424 396 21 4 2216 2606 32165624 32165233 1.320000e-154 556
24 TraesCS2B01G435900 chr1B 92.564 390 21 3 2221 2606 87283801 87283416 1.710000e-153 553
25 TraesCS2B01G435900 chr1B 79.430 632 99 22 2073 2687 262715574 262714957 6.500000e-113 418
26 TraesCS2B01G435900 chr1B 79.430 632 99 22 2073 2687 262757690 262757073 6.500000e-113 418
27 TraesCS2B01G435900 chr1B 78.956 632 102 17 2073 2687 370839886 370840503 6.550000e-108 401
28 TraesCS2B01G435900 chr1B 78.639 632 104 17 2073 2687 472312934 472312317 1.420000e-104 390
29 TraesCS2B01G435900 chr1B 86.792 159 19 2 2726 2883 262757068 262756911 4.320000e-40 176
30 TraesCS2B01G435900 chr5B 79.747 632 97 18 2073 2687 142424715 142425332 3.000000e-116 429
31 TraesCS2B01G435900 chr5B 87.421 159 18 2 2726 2883 142425337 142425494 9.280000e-42 182
32 TraesCS2B01G435900 chr3B 87.937 315 28 4 3537 3850 692046966 692047271 3.090000e-96 363
33 TraesCS2B01G435900 chr3B 89.908 109 9 2 3416 3522 692046871 692046979 5.670000e-29 139
34 TraesCS2B01G435900 chr7A 77.211 588 89 35 3414 3988 23283346 23283901 6.830000e-78 302
35 TraesCS2B01G435900 chr5A 77.375 579 85 32 3422 3988 9638169 9637625 6.830000e-78 302
36 TraesCS2B01G435900 chr5A 77.108 581 88 31 3421 3988 458999854 458999306 1.140000e-75 294
37 TraesCS2B01G435900 chr1A 76.897 580 90 30 3421 3988 127095870 127095323 5.320000e-74 289
38 TraesCS2B01G435900 chr3A 76.732 563 89 29 3421 3971 83037285 83036753 4.140000e-70 276


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G435900 chr2B 626152478 626156681 4203 True 7764.000000 7764 100.000000 1 4204 1 chr2B.!!$R2 4203
1 TraesCS2B01G435900 chr2B 652826122 652826913 791 False 1094.000000 1094 91.760000 3414 4202 1 chr2B.!!$F1 788
2 TraesCS2B01G435900 chr2A 672949933 672953940 4007 True 1207.333333 2987 87.054667 191 3415 3 chr2A.!!$R1 3224
3 TraesCS2B01G435900 chr2D 528330168 528333184 3016 True 1564.000000 2333 85.054000 132 3167 2 chr2D.!!$R1 3035
4 TraesCS2B01G435900 chr4A 667014939 667015739 800 True 1175.000000 1175 93.392000 3416 4204 1 chr4A.!!$R1 788
5 TraesCS2B01G435900 chr6B 665427162 665427942 780 False 1037.000000 1037 90.738000 3416 4201 1 chr6B.!!$F2 785
6 TraesCS2B01G435900 chr6B 200016502 200017276 774 False 946.000000 946 88.752000 3407 4201 1 chr6B.!!$F1 794
7 TraesCS2B01G435900 chr6B 83596654 83597433 779 True 289.000000 407 82.639000 2073 2883 2 chr6B.!!$R4 810
8 TraesCS2B01G435900 chr4B 72880803 72881357 554 True 490.000000 490 82.823000 3416 3996 1 chr4B.!!$R1 580
9 TraesCS2B01G435900 chr4B 485429042 485429858 816 True 282.500000 418 84.206500 2073 2883 2 chr4B.!!$R3 810
10 TraesCS2B01G435900 chr1B 262714957 262715574 617 True 418.000000 418 79.430000 2073 2687 1 chr1B.!!$R3 614
11 TraesCS2B01G435900 chr1B 370839886 370840503 617 False 401.000000 401 78.956000 2073 2687 1 chr1B.!!$F1 614
12 TraesCS2B01G435900 chr1B 472312317 472312934 617 True 390.000000 390 78.639000 2073 2687 1 chr1B.!!$R4 614
13 TraesCS2B01G435900 chr1B 262756911 262757690 779 True 297.000000 418 83.111000 2073 2883 2 chr1B.!!$R5 810
14 TraesCS2B01G435900 chr5B 142424715 142425494 779 False 305.500000 429 83.584000 2073 2883 2 chr5B.!!$F1 810
15 TraesCS2B01G435900 chr7A 23283346 23283901 555 False 302.000000 302 77.211000 3414 3988 1 chr7A.!!$F1 574
16 TraesCS2B01G435900 chr5A 9637625 9638169 544 True 302.000000 302 77.375000 3422 3988 1 chr5A.!!$R1 566
17 TraesCS2B01G435900 chr5A 458999306 458999854 548 True 294.000000 294 77.108000 3421 3988 1 chr5A.!!$R2 567
18 TraesCS2B01G435900 chr1A 127095323 127095870 547 True 289.000000 289 76.897000 3421 3988 1 chr1A.!!$R1 567
19 TraesCS2B01G435900 chr3A 83036753 83037285 532 True 276.000000 276 76.732000 3421 3971 1 chr3A.!!$R1 550

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
74 75 0.109919 GAACGATCCAAACCGGTTGC 60.110 55.0 23.08 7.42 35.74 4.17 F
1032 1280 0.250727 TAGCACTGCAACCTGGGAAC 60.251 55.0 3.30 0.00 0.00 3.62 F
1218 1488 0.036765 TTCGGATTCCCACCACTTCG 60.037 55.0 0.00 0.00 0.00 3.79 F
2722 3118 0.038159 AGAAGCTTCGGTTCGGAGTG 60.038 55.0 20.43 0.00 43.68 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1052 1300 0.032130 GCAAGTGGTGACTCGACTGA 59.968 55.000 0.0 0.00 35.38 3.41 R
2702 3098 0.038159 ACTCCGAACCGAAGCTTCTG 60.038 55.000 23.5 19.47 0.00 3.02 R
2748 3182 0.523125 CCACGCAACGGCACAATATG 60.523 55.000 0.0 0.00 41.24 1.78 R
3793 4905 1.566231 CCACCCTGCCCTTAGATCTTT 59.434 52.381 0.0 0.00 0.00 2.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.071580 CAATCCCAACGAGCTCCTC 57.928 57.895 8.47 0.00 0.00 3.71
26 27 4.821589 CGAGCTCCTCGCCCCAAC 62.822 72.222 8.47 0.00 46.75 3.77
27 28 3.394836 GAGCTCCTCGCCCCAACT 61.395 66.667 0.87 0.00 40.39 3.16
28 29 3.672295 GAGCTCCTCGCCCCAACTG 62.672 68.421 0.87 0.00 40.39 3.16
29 30 3.706373 GCTCCTCGCCCCAACTGA 61.706 66.667 0.00 0.00 0.00 3.41
30 31 3.068881 CTCCTCGCCCCAACTGAA 58.931 61.111 0.00 0.00 0.00 3.02
31 32 1.376037 CTCCTCGCCCCAACTGAAC 60.376 63.158 0.00 0.00 0.00 3.18
32 33 2.111999 CTCCTCGCCCCAACTGAACA 62.112 60.000 0.00 0.00 0.00 3.18
33 34 1.966451 CCTCGCCCCAACTGAACAC 60.966 63.158 0.00 0.00 0.00 3.32
34 35 1.227823 CTCGCCCCAACTGAACACA 60.228 57.895 0.00 0.00 0.00 3.72
35 36 1.507141 CTCGCCCCAACTGAACACAC 61.507 60.000 0.00 0.00 0.00 3.82
36 37 2.892334 CGCCCCAACTGAACACACG 61.892 63.158 0.00 0.00 0.00 4.49
37 38 2.551912 GCCCCAACTGAACACACGG 61.552 63.158 0.00 0.00 0.00 4.94
38 39 2.551912 CCCCAACTGAACACACGGC 61.552 63.158 0.00 0.00 0.00 5.68
39 40 2.551912 CCCAACTGAACACACGGCC 61.552 63.158 0.00 0.00 0.00 6.13
40 41 1.821759 CCAACTGAACACACGGCCA 60.822 57.895 2.24 0.00 0.00 5.36
41 42 1.355210 CAACTGAACACACGGCCAC 59.645 57.895 2.24 0.00 0.00 5.01
63 64 3.910104 GGAACGCGCGAACGATCC 61.910 66.667 39.36 27.50 45.81 3.36
64 65 3.176578 GAACGCGCGAACGATCCA 61.177 61.111 39.36 0.00 43.93 3.41
65 66 2.722731 GAACGCGCGAACGATCCAA 61.723 57.895 39.36 0.00 43.93 3.53
66 67 2.217964 GAACGCGCGAACGATCCAAA 62.218 55.000 39.36 0.00 43.93 3.28
67 68 2.275812 CGCGCGAACGATCCAAAC 60.276 61.111 28.94 0.00 43.93 2.93
68 69 2.097728 GCGCGAACGATCCAAACC 59.902 61.111 12.10 0.00 43.93 3.27
69 70 2.394136 CGCGAACGATCCAAACCG 59.606 61.111 0.00 0.00 43.93 4.44
70 71 2.782615 GCGAACGATCCAAACCGG 59.217 61.111 0.00 0.00 0.00 5.28
71 72 2.030958 GCGAACGATCCAAACCGGT 61.031 57.895 0.00 0.00 35.57 5.28
72 73 1.571215 GCGAACGATCCAAACCGGTT 61.571 55.000 15.86 15.86 35.57 4.44
73 74 0.165079 CGAACGATCCAAACCGGTTG 59.835 55.000 23.08 14.70 36.94 3.77
74 75 0.109919 GAACGATCCAAACCGGTTGC 60.110 55.000 23.08 7.42 35.74 4.17
75 76 0.820074 AACGATCCAAACCGGTTGCA 60.820 50.000 23.08 8.17 35.74 4.08
76 77 1.209127 CGATCCAAACCGGTTGCAC 59.791 57.895 23.08 10.04 35.74 4.57
77 78 1.234615 CGATCCAAACCGGTTGCACT 61.235 55.000 23.08 6.51 35.74 4.40
78 79 0.521735 GATCCAAACCGGTTGCACTC 59.478 55.000 23.08 12.14 35.74 3.51
79 80 1.234615 ATCCAAACCGGTTGCACTCG 61.235 55.000 23.08 5.42 35.74 4.18
80 81 2.051345 CAAACCGGTTGCACTCGC 60.051 61.111 23.08 0.00 39.24 5.03
81 82 2.203153 AAACCGGTTGCACTCGCT 60.203 55.556 23.08 0.00 39.64 4.93
82 83 2.251642 AAACCGGTTGCACTCGCTC 61.252 57.895 23.08 0.00 39.64 5.03
86 87 2.126071 GGTTGCACTCGCTCGCTA 60.126 61.111 0.00 0.00 39.64 4.26
87 88 2.445438 GGTTGCACTCGCTCGCTAC 61.445 63.158 0.00 0.00 39.64 3.58
88 89 2.504026 TTGCACTCGCTCGCTACG 60.504 61.111 0.00 0.00 39.64 3.51
89 90 2.973316 TTGCACTCGCTCGCTACGA 61.973 57.895 0.00 0.00 39.64 3.43
90 91 2.202440 GCACTCGCTCGCTACGAA 60.202 61.111 0.00 0.00 39.39 3.85
91 92 2.218239 GCACTCGCTCGCTACGAAG 61.218 63.158 0.00 0.00 39.39 3.79
92 93 2.852431 GCACTCGCTCGCTACGAAGT 62.852 60.000 0.00 0.00 39.39 3.01
93 94 1.128724 CACTCGCTCGCTACGAAGTG 61.129 60.000 6.07 6.07 45.73 3.16
94 95 1.296755 ACTCGCTCGCTACGAAGTGA 61.297 55.000 0.00 0.00 45.73 3.41
103 104 4.806330 TCGCTACGAAGTGAGAAAAATCT 58.194 39.130 0.00 0.00 45.73 2.40
104 105 5.227908 TCGCTACGAAGTGAGAAAAATCTT 58.772 37.500 0.00 0.00 45.73 2.40
105 106 5.345202 TCGCTACGAAGTGAGAAAAATCTTC 59.655 40.000 0.00 0.00 45.73 2.87
106 107 5.346281 CGCTACGAAGTGAGAAAAATCTTCT 59.654 40.000 0.00 0.00 45.73 2.85
107 108 6.529696 GCTACGAAGTGAGAAAAATCTTCTG 58.470 40.000 0.00 0.00 45.73 3.02
108 109 5.349824 ACGAAGTGAGAAAAATCTTCTGC 57.650 39.130 0.00 0.00 42.51 4.26
109 110 5.059833 ACGAAGTGAGAAAAATCTTCTGCT 58.940 37.500 0.00 0.00 42.51 4.24
110 111 5.529060 ACGAAGTGAGAAAAATCTTCTGCTT 59.471 36.000 0.00 0.00 42.51 3.91
111 112 5.850128 CGAAGTGAGAAAAATCTTCTGCTTG 59.150 40.000 0.00 0.00 35.55 4.01
112 113 5.702349 AGTGAGAAAAATCTTCTGCTTGG 57.298 39.130 0.00 0.00 0.00 3.61
113 114 5.136105 AGTGAGAAAAATCTTCTGCTTGGT 58.864 37.500 0.00 0.00 0.00 3.67
114 115 5.595952 AGTGAGAAAAATCTTCTGCTTGGTT 59.404 36.000 0.00 0.00 0.00 3.67
115 116 5.917447 GTGAGAAAAATCTTCTGCTTGGTTC 59.083 40.000 0.00 0.00 0.00 3.62
116 117 5.829924 TGAGAAAAATCTTCTGCTTGGTTCT 59.170 36.000 0.00 0.00 0.00 3.01
117 118 6.998074 TGAGAAAAATCTTCTGCTTGGTTCTA 59.002 34.615 0.00 0.00 0.00 2.10
118 119 7.502226 TGAGAAAAATCTTCTGCTTGGTTCTAA 59.498 33.333 0.00 0.00 0.00 2.10
119 120 8.237811 AGAAAAATCTTCTGCTTGGTTCTAAA 57.762 30.769 0.00 0.00 0.00 1.85
120 121 8.695456 AGAAAAATCTTCTGCTTGGTTCTAAAA 58.305 29.630 0.00 0.00 0.00 1.52
121 122 8.877808 AAAAATCTTCTGCTTGGTTCTAAAAG 57.122 30.769 0.00 0.00 0.00 2.27
122 123 7.823745 AAATCTTCTGCTTGGTTCTAAAAGA 57.176 32.000 0.00 0.00 0.00 2.52
123 124 7.446001 AATCTTCTGCTTGGTTCTAAAAGAG 57.554 36.000 0.00 0.00 0.00 2.85
124 125 6.174720 TCTTCTGCTTGGTTCTAAAAGAGA 57.825 37.500 0.00 0.00 0.00 3.10
125 126 6.226787 TCTTCTGCTTGGTTCTAAAAGAGAG 58.773 40.000 0.00 0.00 34.93 3.20
126 127 5.808366 TCTGCTTGGTTCTAAAAGAGAGA 57.192 39.130 0.00 0.00 34.93 3.10
127 128 5.788450 TCTGCTTGGTTCTAAAAGAGAGAG 58.212 41.667 0.00 0.00 34.93 3.20
128 129 5.540337 TCTGCTTGGTTCTAAAAGAGAGAGA 59.460 40.000 0.00 0.00 34.93 3.10
129 130 5.788450 TGCTTGGTTCTAAAAGAGAGAGAG 58.212 41.667 0.00 0.00 34.93 3.20
130 131 5.540337 TGCTTGGTTCTAAAAGAGAGAGAGA 59.460 40.000 0.00 0.00 34.93 3.10
135 136 6.884295 TGGTTCTAAAAGAGAGAGAGAGAGAG 59.116 42.308 0.00 0.00 34.93 3.20
148 149 6.662755 AGAGAGAGAGAGAAATCTTCTGCTA 58.337 40.000 0.00 0.00 40.87 3.49
168 169 4.319839 GCTACTTTTCTTCAGACTGTTGCC 60.320 45.833 1.59 0.00 0.00 4.52
173 174 3.777106 TCTTCAGACTGTTGCCTGAAT 57.223 42.857 9.88 0.00 45.13 2.57
174 175 3.405831 TCTTCAGACTGTTGCCTGAATG 58.594 45.455 9.88 6.11 45.13 2.67
175 176 3.071457 TCTTCAGACTGTTGCCTGAATGA 59.929 43.478 9.88 7.74 45.13 2.57
177 178 3.405831 TCAGACTGTTGCCTGAATGAAG 58.594 45.455 1.59 0.00 36.58 3.02
180 181 4.276678 CAGACTGTTGCCTGAATGAAGAAA 59.723 41.667 0.00 0.00 32.37 2.52
267 268 2.554142 TCATGACCGAGACAATCATGC 58.446 47.619 8.28 0.00 46.13 4.06
290 294 6.173339 GCGGATATCTGGATGAGGAAATTTA 58.827 40.000 13.48 0.00 0.00 1.40
306 313 6.539103 AGGAAATTTATAGTTCGTTCAGCTCC 59.461 38.462 0.00 0.00 0.00 4.70
307 314 5.968387 AATTTATAGTTCGTTCAGCTCCG 57.032 39.130 0.00 0.00 0.00 4.63
311 318 2.457366 AGTTCGTTCAGCTCCGATTT 57.543 45.000 1.00 0.00 32.44 2.17
314 321 2.448926 TCGTTCAGCTCCGATTTGAA 57.551 45.000 0.00 0.00 0.00 2.69
315 322 2.066262 TCGTTCAGCTCCGATTTGAAC 58.934 47.619 12.08 12.08 44.39 3.18
317 324 2.066262 GTTCAGCTCCGATTTGAACGA 58.934 47.619 8.54 0.00 40.64 3.85
318 325 2.448926 TCAGCTCCGATTTGAACGAA 57.551 45.000 0.00 0.00 0.00 3.85
319 326 2.761559 TCAGCTCCGATTTGAACGAAA 58.238 42.857 0.00 0.00 0.00 3.46
320 327 2.736721 TCAGCTCCGATTTGAACGAAAG 59.263 45.455 0.00 0.00 0.00 2.62
321 328 1.464997 AGCTCCGATTTGAACGAAAGC 59.535 47.619 0.00 0.00 38.54 3.51
322 329 1.464997 GCTCCGATTTGAACGAAAGCT 59.535 47.619 0.00 0.00 36.86 3.74
323 330 2.671396 GCTCCGATTTGAACGAAAGCTA 59.329 45.455 0.00 0.00 36.86 3.32
324 331 3.124636 GCTCCGATTTGAACGAAAGCTAA 59.875 43.478 0.00 0.00 36.86 3.09
325 332 4.378046 GCTCCGATTTGAACGAAAGCTAAA 60.378 41.667 0.00 0.00 36.86 1.85
326 333 5.025986 TCCGATTTGAACGAAAGCTAAAC 57.974 39.130 0.00 0.00 0.00 2.01
327 334 3.838550 CCGATTTGAACGAAAGCTAAACG 59.161 43.478 0.00 0.00 0.00 3.60
328 335 3.838550 CGATTTGAACGAAAGCTAAACGG 59.161 43.478 10.78 0.00 0.00 4.44
329 336 4.376615 CGATTTGAACGAAAGCTAAACGGA 60.377 41.667 10.78 0.00 0.00 4.69
330 337 5.622770 ATTTGAACGAAAGCTAAACGGAT 57.377 34.783 10.78 1.31 0.00 4.18
331 338 4.398549 TTGAACGAAAGCTAAACGGATG 57.601 40.909 10.78 0.00 0.00 3.51
332 339 3.395639 TGAACGAAAGCTAAACGGATGT 58.604 40.909 10.78 0.00 0.00 3.06
333 340 4.558178 TGAACGAAAGCTAAACGGATGTA 58.442 39.130 10.78 0.00 0.00 2.29
334 341 5.172934 TGAACGAAAGCTAAACGGATGTAT 58.827 37.500 10.78 0.00 0.00 2.29
384 395 0.394192 CACAGAGGCAGACAGGAACA 59.606 55.000 0.00 0.00 0.00 3.18
391 402 3.241530 AGACAGGAACAGGGCGCA 61.242 61.111 10.83 0.00 0.00 6.09
425 436 4.042934 AGACCTAACTAATTGCAACCACCT 59.957 41.667 0.00 0.00 0.00 4.00
461 480 1.768684 AAGCTGACAAGAAGGGCGGA 61.769 55.000 0.00 0.00 0.00 5.54
560 579 2.123208 TCCTCGTCACACCCACCA 60.123 61.111 0.00 0.00 0.00 4.17
588 610 2.345760 CGGCCAGGCAGCATTTTCT 61.346 57.895 15.19 0.00 0.00 2.52
610 632 4.082523 CCACATGCGTCCGGGACT 62.083 66.667 23.86 3.52 0.00 3.85
611 633 2.509336 CACATGCGTCCGGGACTC 60.509 66.667 23.86 17.36 0.00 3.36
612 634 2.680352 ACATGCGTCCGGGACTCT 60.680 61.111 23.86 6.41 0.00 3.24
669 697 7.137426 CACTGTCGTCAAGTTAGTTTAGTACT 58.863 38.462 0.00 0.00 41.04 2.73
670 698 8.285394 CACTGTCGTCAAGTTAGTTTAGTACTA 58.715 37.037 0.00 0.00 38.33 1.82
671 699 8.286097 ACTGTCGTCAAGTTAGTTTAGTACTAC 58.714 37.037 0.91 0.00 39.05 2.73
672 700 7.290842 TGTCGTCAAGTTAGTTTAGTACTACG 58.709 38.462 0.91 1.01 39.05 3.51
693 721 1.065401 CCGTGCTTTTGTTCTCTTGCA 59.935 47.619 0.00 0.00 0.00 4.08
694 722 2.111756 CGTGCTTTTGTTCTCTTGCAC 58.888 47.619 0.00 0.00 44.77 4.57
744 989 6.316390 CCTAATGATAACAATCGGATTAGGGC 59.684 42.308 2.35 0.00 37.05 5.19
814 1059 4.610714 GGGATCTTCGCCCGCTCC 62.611 72.222 0.00 0.00 35.50 4.70
815 1060 4.951963 GGATCTTCGCCCGCTCCG 62.952 72.222 0.00 0.00 0.00 4.63
902 1150 4.094442 CCGCCGATATTTTTATAAGCTCCC 59.906 45.833 0.00 0.00 0.00 4.30
969 1217 2.845739 CGCACGCCGTATCAGTTCG 61.846 63.158 0.00 0.00 0.00 3.95
970 1218 2.995482 CACGCCGTATCAGTTCGC 59.005 61.111 0.00 0.00 0.00 4.70
971 1219 2.578713 ACGCCGTATCAGTTCGCG 60.579 61.111 0.00 0.00 34.74 5.87
975 1223 1.944676 CCGTATCAGTTCGCGCTCC 60.945 63.158 5.56 0.00 0.00 4.70
976 1224 1.064296 CGTATCAGTTCGCGCTCCT 59.936 57.895 5.56 0.00 0.00 3.69
977 1225 1.202973 CGTATCAGTTCGCGCTCCTG 61.203 60.000 5.56 8.67 0.00 3.86
979 1227 1.667154 TATCAGTTCGCGCTCCTGCT 61.667 55.000 5.56 2.68 36.97 4.24
980 1228 2.513026 ATCAGTTCGCGCTCCTGCTT 62.513 55.000 5.56 0.00 36.97 3.91
981 1229 2.433318 AGTTCGCGCTCCTGCTTC 60.433 61.111 5.56 0.00 36.97 3.86
982 1230 3.491652 GTTCGCGCTCCTGCTTCC 61.492 66.667 5.56 0.00 36.97 3.46
983 1231 4.760047 TTCGCGCTCCTGCTTCCC 62.760 66.667 5.56 0.00 36.97 3.97
988 1236 4.704833 GCTCCTGCTTCCCACGCA 62.705 66.667 0.00 0.00 36.03 5.24
989 1237 2.743928 CTCCTGCTTCCCACGCAC 60.744 66.667 0.00 0.00 33.19 5.34
1025 1273 1.002366 CTCGTGATAGCACTGCAACC 58.998 55.000 9.79 0.00 42.93 3.77
1030 1278 0.253044 GATAGCACTGCAACCTGGGA 59.747 55.000 3.30 0.00 0.00 4.37
1032 1280 0.250727 TAGCACTGCAACCTGGGAAC 60.251 55.000 3.30 0.00 0.00 3.62
1050 1298 5.453567 GGAACCACTTTCTTTACATTGCT 57.546 39.130 0.00 0.00 34.26 3.91
1051 1299 5.461526 GGAACCACTTTCTTTACATTGCTC 58.538 41.667 0.00 0.00 34.26 4.26
1052 1300 5.241728 GGAACCACTTTCTTTACATTGCTCT 59.758 40.000 0.00 0.00 34.26 4.09
1053 1301 5.948992 ACCACTTTCTTTACATTGCTCTC 57.051 39.130 0.00 0.00 0.00 3.20
1061 1325 4.218635 TCTTTACATTGCTCTCAGTCGAGT 59.781 41.667 0.00 0.00 40.44 4.18
1127 1394 4.121669 GCCGCTCTCTGCTCGACA 62.122 66.667 0.00 0.00 40.11 4.35
1209 1479 0.466124 CTCCAGAGGTTCGGATTCCC 59.534 60.000 0.00 0.00 0.00 3.97
1211 1481 0.107654 CCAGAGGTTCGGATTCCCAC 60.108 60.000 0.00 0.00 0.00 4.61
1213 1483 0.546747 AGAGGTTCGGATTCCCACCA 60.547 55.000 17.33 0.00 32.40 4.17
1214 1484 0.392595 GAGGTTCGGATTCCCACCAC 60.393 60.000 17.33 9.85 32.40 4.16
1216 1486 0.037734 GGTTCGGATTCCCACCACTT 59.962 55.000 12.16 0.00 30.82 3.16
1217 1487 1.450025 GTTCGGATTCCCACCACTTC 58.550 55.000 0.00 0.00 0.00 3.01
1218 1488 0.036765 TTCGGATTCCCACCACTTCG 60.037 55.000 0.00 0.00 0.00 3.79
1221 1491 0.739813 GGATTCCCACCACTTCGTCG 60.740 60.000 0.00 0.00 0.00 5.12
1223 1493 2.798148 ATTCCCACCACTTCGTCGGC 62.798 60.000 0.00 0.00 0.00 5.54
1224 1494 4.308458 CCCACCACTTCGTCGGCA 62.308 66.667 0.00 0.00 0.00 5.69
1226 1496 2.338620 CACCACTTCGTCGGCAGA 59.661 61.111 0.00 0.00 0.00 4.26
1228 1498 0.172578 CACCACTTCGTCGGCAGATA 59.827 55.000 0.00 0.00 0.00 1.98
1229 1499 0.172803 ACCACTTCGTCGGCAGATAC 59.827 55.000 0.00 0.00 0.00 2.24
1230 1500 0.172578 CCACTTCGTCGGCAGATACA 59.827 55.000 0.00 0.00 0.00 2.29
1395 1694 1.918293 TCAACTGGCCGGACTCCAT 60.918 57.895 21.41 0.00 32.37 3.41
1438 1737 1.795286 CTGGAGAACAACTTCGTGCTC 59.205 52.381 0.00 0.00 40.43 4.26
1594 1895 3.244422 GGGAGAAAATGGGGGTTTGAAAC 60.244 47.826 0.00 0.00 0.00 2.78
1745 2087 3.260632 TGGATCGATCTGAGTTTGTTCCA 59.739 43.478 23.96 8.54 0.00 3.53
1761 2103 5.435686 TGTTCCAATAGCAGTCAAGGTAT 57.564 39.130 0.00 0.00 33.91 2.73
1764 2106 5.282055 TCCAATAGCAGTCAAGGTATGAG 57.718 43.478 0.00 0.00 39.19 2.90
1811 2180 8.761497 CAGTTTGTCTGAACTTAGATACGAAAA 58.239 33.333 0.00 0.00 46.27 2.29
1817 2186 9.570488 GTCTGAACTTAGATACGAAAACAGTAT 57.430 33.333 0.00 0.00 37.49 2.12
2003 2378 5.643421 ATGATCAAATGGAGGTAGCTCTT 57.357 39.130 20.67 6.27 0.00 2.85
2004 2379 5.441718 TGATCAAATGGAGGTAGCTCTTT 57.558 39.130 20.67 11.81 0.00 2.52
2012 2387 4.253273 GTAGCTCTTTCGCGCGCG 62.253 66.667 44.84 44.84 41.35 6.86
2196 2571 2.306341 AGGACGCACTGAAGATCATG 57.694 50.000 0.00 0.00 0.00 3.07
2208 2586 3.134623 TGAAGATCATGGGCGATACAACT 59.865 43.478 0.00 0.00 0.00 3.16
2225 2605 3.189080 ACAACTGTAGTACGCGATGTGTA 59.811 43.478 15.93 0.00 0.00 2.90
2244 2624 3.678072 TGTATCGCTGTTACTGAAGCAAC 59.322 43.478 0.00 0.00 39.47 4.17
2323 2706 5.004448 GGAAGAAACAGGGGTAAGAAAGAG 58.996 45.833 0.00 0.00 0.00 2.85
2340 2723 1.066573 AGAGAACCGAGCACTTGGATG 60.067 52.381 11.05 0.00 37.57 3.51
2349 2732 1.244019 GCACTTGGATGCCCGTTCTT 61.244 55.000 0.00 0.00 39.86 2.52
2352 2735 1.202879 ACTTGGATGCCCGTTCTTTGA 60.203 47.619 0.00 0.00 34.29 2.69
2355 2738 1.339055 TGGATGCCCGTTCTTTGAGAG 60.339 52.381 0.00 0.00 34.29 3.20
2356 2739 1.373570 GATGCCCGTTCTTTGAGAGG 58.626 55.000 0.00 0.00 0.00 3.69
2357 2740 0.678048 ATGCCCGTTCTTTGAGAGGC 60.678 55.000 0.00 0.00 34.66 4.70
2358 2741 2.041115 GCCCGTTCTTTGAGAGGCC 61.041 63.158 0.00 0.00 29.60 5.19
2363 2746 2.030805 CCGTTCTTTGAGAGGCCTTTTG 60.031 50.000 6.77 0.00 0.00 2.44
2402 2786 5.825151 TGAATGTGTTGTTCTTGTGGTGATA 59.175 36.000 0.00 0.00 0.00 2.15
2466 2850 4.536090 AGGTAAACAATCATCCACCTCAGA 59.464 41.667 0.00 0.00 30.59 3.27
2471 2855 0.469070 ATCATCCACCTCAGAGCAGC 59.531 55.000 0.00 0.00 0.00 5.25
2478 2862 1.547820 CACCTCAGAGCAGCAACTCTA 59.452 52.381 8.07 0.00 45.33 2.43
2487 2874 2.949644 AGCAGCAACTCTAAAACCGTTT 59.050 40.909 0.00 0.00 0.00 3.60
2491 2878 4.733405 CAGCAACTCTAAAACCGTTTTGTC 59.267 41.667 17.73 0.00 34.19 3.18
2492 2879 4.039703 GCAACTCTAAAACCGTTTTGTCC 58.960 43.478 17.73 1.65 34.19 4.02
2493 2880 4.276460 CAACTCTAAAACCGTTTTGTCCG 58.724 43.478 17.73 7.32 34.19 4.79
2662 3057 2.954318 GGCAGCAAAGGTACATCATCAT 59.046 45.455 0.00 0.00 0.00 2.45
2681 3076 8.908786 TCATCATCATCTTCAAAACTATACCC 57.091 34.615 0.00 0.00 0.00 3.69
2699 3095 0.657840 CCGAAAATCGACTCCATGGC 59.342 55.000 6.96 0.00 43.74 4.40
2702 3098 1.064654 GAAAATCGACTCCATGGCAGC 59.935 52.381 6.96 0.00 0.00 5.25
2707 3103 1.088340 CGACTCCATGGCAGCAGAAG 61.088 60.000 6.96 0.00 0.00 2.85
2722 3118 0.038159 AGAAGCTTCGGTTCGGAGTG 60.038 55.000 20.43 0.00 43.68 3.51
2725 3121 2.087009 GCTTCGGTTCGGAGTGTCG 61.087 63.158 0.00 0.00 34.53 4.35
2727 3123 1.002250 CTTCGGTTCGGAGTGTCGTG 61.002 60.000 0.00 0.00 0.00 4.35
2728 3124 3.103911 CGGTTCGGAGTGTCGTGC 61.104 66.667 0.00 0.00 0.00 5.34
2729 3125 2.338984 GGTTCGGAGTGTCGTGCT 59.661 61.111 0.00 0.00 0.00 4.40
2748 3182 4.309254 GCTTTTACTGAAGCGTCTGTAC 57.691 45.455 16.63 4.61 42.17 2.90
2759 3194 1.257936 GCGTCTGTACATATTGTGCCG 59.742 52.381 0.00 0.00 31.71 5.69
2763 3198 2.675844 TCTGTACATATTGTGCCGTTGC 59.324 45.455 0.00 0.00 31.71 4.17
3089 3524 4.077108 TGGCCTCTGTATATACGTGTAGG 58.923 47.826 3.32 11.75 0.00 3.18
3131 3566 1.516603 GACGGGTTAGCTCTGTCGC 60.517 63.158 0.00 0.00 31.85 5.19
3140 3575 2.476873 AGCTCTGTCGCGTAGTAATG 57.523 50.000 5.77 0.98 34.40 1.90
3175 3616 2.111460 GTGTACCGGTGGTGGCAA 59.889 61.111 19.93 0.00 36.19 4.52
3196 3637 6.264067 GGCAATTATCTAGAAGAAATGGCAGT 59.736 38.462 19.37 0.00 30.32 4.40
3241 3682 4.811555 TCAGTTTCAGTGTATTGTGCAC 57.188 40.909 10.75 10.75 37.13 4.57
3243 3684 4.881273 TCAGTTTCAGTGTATTGTGCACTT 59.119 37.500 19.41 8.24 43.87 3.16
3245 3686 5.456497 CAGTTTCAGTGTATTGTGCACTTTG 59.544 40.000 19.41 6.00 43.87 2.77
3246 3687 5.356751 AGTTTCAGTGTATTGTGCACTTTGA 59.643 36.000 19.41 8.13 43.87 2.69
3247 3688 5.826601 TTCAGTGTATTGTGCACTTTGAA 57.173 34.783 19.41 13.06 43.87 2.69
3252 4202 6.197096 CAGTGTATTGTGCACTTTGAAAAGAC 59.803 38.462 19.41 10.46 43.87 3.01
3264 4214 5.656416 ACTTTGAAAAGACCATGTTTCTCCA 59.344 36.000 9.71 0.15 39.31 3.86
3265 4215 5.514274 TTGAAAAGACCATGTTTCTCCAC 57.486 39.130 7.72 0.00 35.26 4.02
3266 4216 3.563808 TGAAAAGACCATGTTTCTCCACG 59.436 43.478 7.72 0.00 35.26 4.94
3280 4335 0.901827 TCCACGCTCCTCTAATTGCA 59.098 50.000 0.00 0.00 0.00 4.08
3298 4353 2.562298 TGCATTGATTTTCTTCCGGCTT 59.438 40.909 0.00 0.00 0.00 4.35
3357 4414 4.621034 CGATACAAAGTGAATTGCCCAAAC 59.379 41.667 0.00 0.00 33.52 2.93
3362 4419 1.412343 AGTGAATTGCCCAAACCACAC 59.588 47.619 14.22 0.00 32.71 3.82
3365 4422 2.209273 GAATTGCCCAAACCACACAAC 58.791 47.619 0.00 0.00 0.00 3.32
3379 4436 3.323403 CCACACAACCCATACAAAATGGT 59.677 43.478 3.49 0.00 37.48 3.55
3382 4439 5.475220 CACACAACCCATACAAAATGGTAGA 59.525 40.000 3.49 0.00 37.48 2.59
3407 4464 7.488322 AGAAAATTCGATCCAAACAAGTCAAA 58.512 30.769 0.00 0.00 0.00 2.69
3418 4475 7.488322 TCCAAACAAGTCAAACAATAAAGGAG 58.512 34.615 0.00 0.00 0.00 3.69
3478 4536 0.320374 GGCCAGCCCAAAAAGGTAAC 59.680 55.000 0.00 0.00 34.66 2.50
3479 4537 1.044611 GCCAGCCCAAAAAGGTAACA 58.955 50.000 0.00 0.00 41.41 2.41
3481 4539 2.316108 CCAGCCCAAAAAGGTAACACT 58.684 47.619 0.00 0.00 41.41 3.55
3490 4549 1.829138 AAGGTAACACTTGTCCCCCT 58.171 50.000 0.00 0.00 41.41 4.79
3491 4550 1.064825 AGGTAACACTTGTCCCCCTG 58.935 55.000 0.00 0.00 41.41 4.45
3492 4551 0.608308 GGTAACACTTGTCCCCCTGC 60.608 60.000 0.00 0.00 0.00 4.85
3494 4553 2.119484 TAACACTTGTCCCCCTGCGG 62.119 60.000 0.00 0.00 0.00 5.69
3495 4554 3.953775 CACTTGTCCCCCTGCGGT 61.954 66.667 0.00 0.00 0.00 5.68
3528 4598 3.670637 GACAGGCTGCCATCGAGCA 62.671 63.158 22.65 0.00 41.46 4.26
3605 4693 3.719214 CGCCTTCCACGCCTATTC 58.281 61.111 0.00 0.00 0.00 1.75
3606 4694 2.237751 CGCCTTCCACGCCTATTCG 61.238 63.158 0.00 0.00 0.00 3.34
3607 4695 2.534903 GCCTTCCACGCCTATTCGC 61.535 63.158 0.00 0.00 0.00 4.70
3608 4696 1.887707 CCTTCCACGCCTATTCGCC 60.888 63.158 0.00 0.00 0.00 5.54
3609 4697 1.887707 CTTCCACGCCTATTCGCCC 60.888 63.158 0.00 0.00 0.00 6.13
3610 4698 3.394635 TTCCACGCCTATTCGCCCC 62.395 63.158 0.00 0.00 0.00 5.80
3611 4699 4.929707 CCACGCCTATTCGCCCCC 62.930 72.222 0.00 0.00 0.00 5.40
3612 4700 4.169696 CACGCCTATTCGCCCCCA 62.170 66.667 0.00 0.00 0.00 4.96
3613 4701 4.171103 ACGCCTATTCGCCCCCAC 62.171 66.667 0.00 0.00 0.00 4.61
3616 4704 4.929707 CCTATTCGCCCCCACGCC 62.930 72.222 0.00 0.00 0.00 5.68
3617 4705 4.929707 CTATTCGCCCCCACGCCC 62.930 72.222 0.00 0.00 0.00 6.13
3688 4778 2.686106 GCCCCACGGTCCCTTCTA 60.686 66.667 0.00 0.00 0.00 2.10
3707 4807 6.401047 TTCTACTTCTCCACGAAAGAAAGA 57.599 37.500 0.00 0.00 32.60 2.52
3877 4990 1.203237 TCTGCTCCTCTTCACTTCCCT 60.203 52.381 0.00 0.00 0.00 4.20
3989 5104 4.135306 GAGATGAATCTGGCACATCACAT 58.865 43.478 15.54 6.78 41.64 3.21
4010 5125 5.423015 CATCAGCCTACTTGATGTTACTGT 58.577 41.667 6.98 0.00 44.30 3.55
4016 5131 6.156256 AGCCTACTTGATGTTACTGTTGGATA 59.844 38.462 0.00 0.00 0.00 2.59
4192 5307 1.205417 AGCCAAGTAAACATGCATGCC 59.795 47.619 26.53 11.82 0.00 4.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.071580 GAGGAGCTCGTTGGGATTG 57.928 57.895 10.79 0.00 0.00 2.67
13 14 1.376037 GTTCAGTTGGGGCGAGGAG 60.376 63.158 0.00 0.00 0.00 3.69
14 15 2.144078 TGTTCAGTTGGGGCGAGGA 61.144 57.895 0.00 0.00 0.00 3.71
15 16 1.966451 GTGTTCAGTTGGGGCGAGG 60.966 63.158 0.00 0.00 0.00 4.63
16 17 1.227823 TGTGTTCAGTTGGGGCGAG 60.228 57.895 0.00 0.00 0.00 5.03
17 18 1.525077 GTGTGTTCAGTTGGGGCGA 60.525 57.895 0.00 0.00 0.00 5.54
18 19 2.892334 CGTGTGTTCAGTTGGGGCG 61.892 63.158 0.00 0.00 0.00 6.13
19 20 2.551912 CCGTGTGTTCAGTTGGGGC 61.552 63.158 0.00 0.00 0.00 5.80
20 21 2.551912 GCCGTGTGTTCAGTTGGGG 61.552 63.158 0.00 0.00 0.00 4.96
21 22 2.551912 GGCCGTGTGTTCAGTTGGG 61.552 63.158 0.00 0.00 0.00 4.12
22 23 1.821759 TGGCCGTGTGTTCAGTTGG 60.822 57.895 0.00 0.00 0.00 3.77
23 24 1.355210 GTGGCCGTGTGTTCAGTTG 59.645 57.895 0.00 0.00 0.00 3.16
24 25 2.177580 CGTGGCCGTGTGTTCAGTT 61.178 57.895 0.00 0.00 0.00 3.16
25 26 2.587753 CGTGGCCGTGTGTTCAGT 60.588 61.111 0.00 0.00 0.00 3.41
45 46 4.247828 GATCGTTCGCGCGTTCCG 62.248 66.667 30.98 26.98 41.05 4.30
46 47 3.910104 GGATCGTTCGCGCGTTCC 61.910 66.667 30.98 22.60 41.53 3.62
47 48 2.217964 TTTGGATCGTTCGCGCGTTC 62.218 55.000 30.98 21.41 41.05 3.95
48 49 2.311701 TTTGGATCGTTCGCGCGTT 61.312 52.632 30.98 10.60 41.05 4.84
49 50 2.735478 TTTGGATCGTTCGCGCGT 60.735 55.556 30.98 10.20 41.05 6.01
50 51 2.275812 GTTTGGATCGTTCGCGCG 60.276 61.111 26.76 26.76 41.05 6.86
51 52 2.097728 GGTTTGGATCGTTCGCGC 59.902 61.111 0.00 0.00 41.05 6.86
52 53 2.394136 CGGTTTGGATCGTTCGCG 59.606 61.111 0.00 0.00 42.98 5.87
53 54 1.571215 AACCGGTTTGGATCGTTCGC 61.571 55.000 15.86 0.00 42.00 4.70
54 55 0.165079 CAACCGGTTTGGATCGTTCG 59.835 55.000 19.55 0.00 42.00 3.95
55 56 0.109919 GCAACCGGTTTGGATCGTTC 60.110 55.000 19.55 0.00 42.00 3.95
56 57 0.820074 TGCAACCGGTTTGGATCGTT 60.820 50.000 19.55 0.00 42.00 3.85
57 58 1.228003 TGCAACCGGTTTGGATCGT 60.228 52.632 19.55 0.00 42.00 3.73
58 59 1.209127 GTGCAACCGGTTTGGATCG 59.791 57.895 19.55 6.39 42.00 3.69
59 60 0.521735 GAGTGCAACCGGTTTGGATC 59.478 55.000 19.55 10.25 42.00 3.36
60 61 1.234615 CGAGTGCAACCGGTTTGGAT 61.235 55.000 19.55 4.11 42.00 3.41
61 62 1.890041 CGAGTGCAACCGGTTTGGA 60.890 57.895 19.55 11.92 42.00 3.53
62 63 2.637025 CGAGTGCAACCGGTTTGG 59.363 61.111 19.55 8.91 46.41 3.28
63 64 2.051345 GCGAGTGCAACCGGTTTG 60.051 61.111 19.55 14.38 42.15 2.93
64 65 2.203153 AGCGAGTGCAACCGGTTT 60.203 55.556 19.55 2.13 46.23 3.27
65 66 2.665185 GAGCGAGTGCAACCGGTT 60.665 61.111 15.86 15.86 46.23 4.44
68 69 3.964221 TAGCGAGCGAGTGCAACCG 62.964 63.158 4.80 4.80 46.23 4.44
69 70 2.126071 TAGCGAGCGAGTGCAACC 60.126 61.111 0.00 0.00 46.23 3.77
70 71 2.778997 CGTAGCGAGCGAGTGCAAC 61.779 63.158 0.00 0.00 46.23 4.17
71 72 2.466520 TTCGTAGCGAGCGAGTGCAA 62.467 55.000 0.00 0.00 46.23 4.08
72 73 2.850786 CTTCGTAGCGAGCGAGTGCA 62.851 60.000 0.00 0.00 46.23 4.57
73 74 2.202440 TTCGTAGCGAGCGAGTGC 60.202 61.111 0.00 0.00 39.61 4.40
74 75 1.128724 CACTTCGTAGCGAGCGAGTG 61.129 60.000 7.23 7.23 39.61 3.51
75 76 1.134901 CACTTCGTAGCGAGCGAGT 59.865 57.895 0.00 0.00 39.61 4.18
76 77 0.587737 CTCACTTCGTAGCGAGCGAG 60.588 60.000 0.00 0.00 39.61 5.03
77 78 1.017701 TCTCACTTCGTAGCGAGCGA 61.018 55.000 2.48 0.00 37.14 4.93
78 79 0.179197 TTCTCACTTCGTAGCGAGCG 60.179 55.000 2.48 0.00 37.14 5.03
79 80 1.978542 TTTCTCACTTCGTAGCGAGC 58.021 50.000 2.48 0.00 37.14 5.03
80 81 4.859798 AGATTTTTCTCACTTCGTAGCGAG 59.140 41.667 1.00 1.00 37.14 5.03
81 82 4.806330 AGATTTTTCTCACTTCGTAGCGA 58.194 39.130 0.00 0.00 0.00 4.93
82 83 5.346281 AGAAGATTTTTCTCACTTCGTAGCG 59.654 40.000 0.00 0.00 42.09 4.26
83 84 6.529696 CAGAAGATTTTTCTCACTTCGTAGC 58.470 40.000 0.00 0.00 42.09 3.58
84 85 6.367422 AGCAGAAGATTTTTCTCACTTCGTAG 59.633 38.462 0.00 0.00 42.09 3.51
85 86 6.223852 AGCAGAAGATTTTTCTCACTTCGTA 58.776 36.000 0.00 0.00 42.09 3.43
86 87 5.059833 AGCAGAAGATTTTTCTCACTTCGT 58.940 37.500 0.00 0.00 42.09 3.85
87 88 5.604010 AGCAGAAGATTTTTCTCACTTCG 57.396 39.130 0.00 0.00 42.09 3.79
88 89 6.148264 CCAAGCAGAAGATTTTTCTCACTTC 58.852 40.000 0.00 0.00 38.96 3.01
89 90 5.595952 ACCAAGCAGAAGATTTTTCTCACTT 59.404 36.000 0.00 0.00 0.00 3.16
90 91 5.136105 ACCAAGCAGAAGATTTTTCTCACT 58.864 37.500 0.00 0.00 0.00 3.41
91 92 5.444663 ACCAAGCAGAAGATTTTTCTCAC 57.555 39.130 0.00 0.00 0.00 3.51
92 93 5.829924 AGAACCAAGCAGAAGATTTTTCTCA 59.170 36.000 0.00 0.00 0.00 3.27
93 94 6.324561 AGAACCAAGCAGAAGATTTTTCTC 57.675 37.500 0.00 0.00 0.00 2.87
94 95 7.823745 TTAGAACCAAGCAGAAGATTTTTCT 57.176 32.000 0.00 0.00 31.41 2.52
95 96 8.871686 TTTTAGAACCAAGCAGAAGATTTTTC 57.128 30.769 0.00 0.00 0.00 2.29
96 97 8.695456 TCTTTTAGAACCAAGCAGAAGATTTTT 58.305 29.630 0.00 0.00 0.00 1.94
97 98 8.237811 TCTTTTAGAACCAAGCAGAAGATTTT 57.762 30.769 0.00 0.00 0.00 1.82
98 99 7.721399 TCTCTTTTAGAACCAAGCAGAAGATTT 59.279 33.333 0.00 0.00 0.00 2.17
99 100 7.227156 TCTCTTTTAGAACCAAGCAGAAGATT 58.773 34.615 0.00 0.00 0.00 2.40
100 101 6.773638 TCTCTTTTAGAACCAAGCAGAAGAT 58.226 36.000 0.00 0.00 0.00 2.40
101 102 6.042093 TCTCTCTTTTAGAACCAAGCAGAAGA 59.958 38.462 0.00 0.00 32.46 2.87
102 103 6.226787 TCTCTCTTTTAGAACCAAGCAGAAG 58.773 40.000 0.00 0.00 32.46 2.85
103 104 6.042093 TCTCTCTCTTTTAGAACCAAGCAGAA 59.958 38.462 0.00 0.00 32.46 3.02
104 105 5.540337 TCTCTCTCTTTTAGAACCAAGCAGA 59.460 40.000 0.00 0.00 32.46 4.26
105 106 5.788450 TCTCTCTCTTTTAGAACCAAGCAG 58.212 41.667 0.00 0.00 32.46 4.24
106 107 5.540337 TCTCTCTCTCTTTTAGAACCAAGCA 59.460 40.000 0.00 0.00 32.46 3.91
107 108 6.031751 TCTCTCTCTCTTTTAGAACCAAGC 57.968 41.667 0.00 0.00 32.46 4.01
108 109 7.393234 TCTCTCTCTCTCTCTTTTAGAACCAAG 59.607 40.741 0.00 0.00 32.46 3.61
109 110 7.235079 TCTCTCTCTCTCTCTTTTAGAACCAA 58.765 38.462 0.00 0.00 32.46 3.67
110 111 6.785076 TCTCTCTCTCTCTCTTTTAGAACCA 58.215 40.000 0.00 0.00 32.46 3.67
111 112 7.110155 TCTCTCTCTCTCTCTCTTTTAGAACC 58.890 42.308 0.00 0.00 32.46 3.62
112 113 8.561738 TTCTCTCTCTCTCTCTCTTTTAGAAC 57.438 38.462 0.00 0.00 32.46 3.01
113 114 9.753674 ATTTCTCTCTCTCTCTCTCTTTTAGAA 57.246 33.333 0.00 0.00 32.46 2.10
114 115 9.396022 GATTTCTCTCTCTCTCTCTCTTTTAGA 57.604 37.037 0.00 0.00 0.00 2.10
115 116 9.401058 AGATTTCTCTCTCTCTCTCTCTTTTAG 57.599 37.037 0.00 0.00 0.00 1.85
116 117 9.753674 AAGATTTCTCTCTCTCTCTCTCTTTTA 57.246 33.333 0.00 0.00 0.00 1.52
117 118 8.655935 AAGATTTCTCTCTCTCTCTCTCTTTT 57.344 34.615 0.00 0.00 0.00 2.27
118 119 8.112183 AGAAGATTTCTCTCTCTCTCTCTCTTT 58.888 37.037 0.00 0.00 34.07 2.52
119 120 7.555554 CAGAAGATTTCTCTCTCTCTCTCTCTT 59.444 40.741 0.00 0.00 38.11 2.85
120 121 7.052873 CAGAAGATTTCTCTCTCTCTCTCTCT 58.947 42.308 0.00 0.00 38.11 3.10
121 122 6.238593 GCAGAAGATTTCTCTCTCTCTCTCTC 60.239 46.154 0.00 0.00 38.11 3.20
122 123 5.591877 GCAGAAGATTTCTCTCTCTCTCTCT 59.408 44.000 0.00 0.00 38.11 3.10
123 124 5.591877 AGCAGAAGATTTCTCTCTCTCTCTC 59.408 44.000 0.00 0.00 38.11 3.20
124 125 5.513233 AGCAGAAGATTTCTCTCTCTCTCT 58.487 41.667 0.00 0.00 38.11 3.10
125 126 5.841957 AGCAGAAGATTTCTCTCTCTCTC 57.158 43.478 0.00 0.00 38.11 3.20
126 127 6.426587 AGTAGCAGAAGATTTCTCTCTCTCT 58.573 40.000 0.00 0.00 38.11 3.10
127 128 6.699575 AGTAGCAGAAGATTTCTCTCTCTC 57.300 41.667 0.00 0.00 38.11 3.20
128 129 7.480760 AAAGTAGCAGAAGATTTCTCTCTCT 57.519 36.000 0.00 0.00 38.11 3.10
129 130 8.034804 AGAAAAGTAGCAGAAGATTTCTCTCTC 58.965 37.037 0.00 0.00 38.11 3.20
130 131 7.906327 AGAAAAGTAGCAGAAGATTTCTCTCT 58.094 34.615 0.00 0.00 38.11 3.10
135 136 8.227119 GTCTGAAGAAAAGTAGCAGAAGATTTC 58.773 37.037 0.00 0.00 37.35 2.17
148 149 3.629398 CAGGCAACAGTCTGAAGAAAAGT 59.371 43.478 6.91 0.00 37.15 2.66
229 230 1.899437 GATGGTGTCCTCCTTGGCGA 61.899 60.000 0.00 0.00 35.26 5.54
267 268 9.539825 CTATAAATTTCCTCATCCAGATATCCG 57.460 37.037 0.00 0.00 0.00 4.18
290 294 3.802948 AATCGGAGCTGAACGAACTAT 57.197 42.857 8.55 0.00 42.88 2.12
306 313 3.838550 CCGTTTAGCTTTCGTTCAAATCG 59.161 43.478 0.00 0.00 0.00 3.34
307 314 5.025986 TCCGTTTAGCTTTCGTTCAAATC 57.974 39.130 0.00 0.00 0.00 2.17
311 318 3.395639 ACATCCGTTTAGCTTTCGTTCA 58.604 40.909 0.00 0.00 0.00 3.18
314 321 5.924825 GGATATACATCCGTTTAGCTTTCGT 59.075 40.000 0.00 0.00 41.50 3.85
315 322 6.390987 GGATATACATCCGTTTAGCTTTCG 57.609 41.667 0.00 0.00 41.50 3.46
328 335 1.202154 CGCGTCGGAGGGATATACATC 60.202 57.143 0.00 0.00 0.00 3.06
329 336 0.809385 CGCGTCGGAGGGATATACAT 59.191 55.000 0.00 0.00 0.00 2.29
330 337 2.250646 CGCGTCGGAGGGATATACA 58.749 57.895 0.00 0.00 0.00 2.29
391 402 1.168714 GTTAGGTCTCCGTGGTACGT 58.831 55.000 0.00 0.00 40.58 3.57
478 497 2.092968 GTGATCACTGCCTAATCACCCA 60.093 50.000 18.83 0.00 42.12 4.51
610 632 0.247460 CATGCAGAACCCAGACGAGA 59.753 55.000 0.00 0.00 0.00 4.04
611 633 0.036952 ACATGCAGAACCCAGACGAG 60.037 55.000 0.00 0.00 0.00 4.18
612 634 0.037326 GACATGCAGAACCCAGACGA 60.037 55.000 0.00 0.00 0.00 4.20
669 697 0.863144 GAGAACAAAAGCACGGCGTA 59.137 50.000 14.22 0.00 0.00 4.42
670 698 0.814010 AGAGAACAAAAGCACGGCGT 60.814 50.000 6.77 6.77 0.00 5.68
671 699 0.307760 AAGAGAACAAAAGCACGGCG 59.692 50.000 4.80 4.80 0.00 6.46
672 700 1.758783 CAAGAGAACAAAAGCACGGC 58.241 50.000 0.00 0.00 0.00 5.68
744 989 4.899239 GGCAGACGGATGGCCTCG 62.899 72.222 3.32 8.29 44.32 4.63
797 1042 4.610714 GGAGCGGGCGAAGATCCC 62.611 72.222 0.00 0.00 38.17 3.85
798 1043 4.951963 CGGAGCGGGCGAAGATCC 62.952 72.222 0.00 1.27 40.52 3.36
799 1044 4.951963 CCGGAGCGGGCGAAGATC 62.952 72.222 0.00 0.00 44.15 2.75
811 1056 3.470567 GATATTCGCGCGCCGGAG 61.471 66.667 27.95 11.94 37.59 4.63
815 1060 4.980805 TGGGGATATTCGCGCGCC 62.981 66.667 27.95 20.13 35.42 6.53
816 1061 2.742372 ATGGGGATATTCGCGCGC 60.742 61.111 27.95 23.91 0.00 6.86
817 1062 3.027170 GCATGGGGATATTCGCGCG 62.027 63.158 26.76 26.76 0.00 6.86
818 1063 2.690778 GGCATGGGGATATTCGCGC 61.691 63.158 0.00 0.00 0.00 6.86
819 1064 0.677731 ATGGCATGGGGATATTCGCG 60.678 55.000 0.00 0.00 0.00 5.87
820 1065 1.098050 GATGGCATGGGGATATTCGC 58.902 55.000 3.81 0.00 0.00 4.70
971 1219 4.704833 TGCGTGGGAAGCAGGAGC 62.705 66.667 0.00 0.00 40.01 4.70
1025 1273 5.772521 CAATGTAAAGAAAGTGGTTCCCAG 58.227 41.667 0.00 0.00 36.86 4.45
1030 1278 5.827797 TGAGAGCAATGTAAAGAAAGTGGTT 59.172 36.000 0.00 0.00 0.00 3.67
1032 1280 5.471456 ACTGAGAGCAATGTAAAGAAAGTGG 59.529 40.000 0.00 0.00 0.00 4.00
1039 1287 4.489810 ACTCGACTGAGAGCAATGTAAAG 58.510 43.478 0.00 0.00 45.57 1.85
1041 1289 3.506067 TGACTCGACTGAGAGCAATGTAA 59.494 43.478 0.00 0.00 45.57 2.41
1044 1292 2.257894 GTGACTCGACTGAGAGCAATG 58.742 52.381 0.00 0.00 45.57 2.82
1046 1294 0.598562 GGTGACTCGACTGAGAGCAA 59.401 55.000 0.00 0.00 45.57 3.91
1048 1296 0.109504 GTGGTGACTCGACTGAGAGC 60.110 60.000 0.00 0.00 45.57 4.09
1049 1297 1.529226 AGTGGTGACTCGACTGAGAG 58.471 55.000 0.00 4.03 45.57 3.20
1050 1298 1.609072 CAAGTGGTGACTCGACTGAGA 59.391 52.381 0.00 0.00 45.57 3.27
1052 1300 0.032130 GCAAGTGGTGACTCGACTGA 59.968 55.000 0.00 0.00 35.38 3.41
1053 1301 0.946221 GGCAAGTGGTGACTCGACTG 60.946 60.000 0.00 0.00 35.38 3.51
1061 1325 1.672030 CATCGCTGGCAAGTGGTGA 60.672 57.895 9.48 0.00 46.20 4.02
1115 1379 3.062466 CCCGGTGTCGAGCAGAGA 61.062 66.667 0.00 0.00 39.00 3.10
1200 1467 1.189524 ACGAAGTGGTGGGAATCCGA 61.190 55.000 0.00 0.00 42.51 4.55
1211 1481 6.750667 AGATTGTATCTGCCGACGAAGTGG 62.751 50.000 0.00 0.00 38.88 4.00
1213 1483 2.427453 AGATTGTATCTGCCGACGAAGT 59.573 45.455 0.00 0.00 41.08 3.01
1214 1484 3.085443 AGATTGTATCTGCCGACGAAG 57.915 47.619 0.00 0.00 38.44 3.79
1224 1494 4.294232 CTCACGCGATTCAGATTGTATCT 58.706 43.478 15.93 0.00 41.15 1.98
1226 1496 2.797156 GCTCACGCGATTCAGATTGTAT 59.203 45.455 15.93 0.00 0.00 2.29
1228 1498 1.002366 GCTCACGCGATTCAGATTGT 58.998 50.000 15.93 0.00 0.00 2.71
1229 1499 1.284657 AGCTCACGCGATTCAGATTG 58.715 50.000 15.93 0.00 42.32 2.67
1230 1500 2.860735 GTTAGCTCACGCGATTCAGATT 59.139 45.455 15.93 0.00 42.32 2.40
1249 1544 2.747446 ACAACAGCAACGAAAGACAGTT 59.253 40.909 0.00 0.00 0.00 3.16
1253 1548 1.202132 TGCACAACAGCAACGAAAGAC 60.202 47.619 0.00 0.00 42.46 3.01
1254 1549 1.063912 CTGCACAACAGCAACGAAAGA 59.936 47.619 0.00 0.00 45.13 2.52
1387 1686 2.270874 AATGGTGGCCGATGGAGTCC 62.271 60.000 0.73 0.73 0.00 3.85
1414 1713 1.978580 ACGAAGTTGTTCTCCAGGGAT 59.021 47.619 0.00 0.00 37.78 3.85
1415 1714 1.070134 CACGAAGTTGTTCTCCAGGGA 59.930 52.381 0.00 0.00 41.61 4.20
1522 1821 4.124943 TAGGAGAGGGACGCCGCT 62.125 66.667 0.00 0.00 43.25 5.52
1615 1948 7.744087 TGCTGATACATTTAGTGAACACTTT 57.256 32.000 12.66 0.00 42.54 2.66
1618 1951 7.095229 TGAGTTGCTGATACATTTAGTGAACAC 60.095 37.037 0.00 0.00 0.00 3.32
1745 2087 8.414778 GTTAGTACTCATACCTTGACTGCTATT 58.585 37.037 0.00 0.00 30.88 1.73
1761 2103 8.631480 TGATTTCAGTGACTAGTTAGTACTCA 57.369 34.615 0.00 0.00 36.50 3.41
1817 2186 3.489355 ACATGGCATCAGTTCAGTGAAA 58.511 40.909 7.25 0.00 0.00 2.69
1834 2209 3.346315 TGCACACAGATTTAGGGACATG 58.654 45.455 0.00 0.00 0.00 3.21
2012 2387 5.041940 CAGACCGAAACTATTACTAGCACC 58.958 45.833 0.00 0.00 0.00 5.01
2196 2571 2.724349 CGTACTACAGTTGTATCGCCC 58.276 52.381 0.00 0.00 0.00 6.13
2208 2586 3.243226 CGATACACATCGCGTACTACA 57.757 47.619 5.77 0.00 46.80 2.74
2225 2605 2.738846 CAGTTGCTTCAGTAACAGCGAT 59.261 45.455 10.01 0.00 42.02 4.58
2244 2624 3.065655 CTGACTGCAAGAGGAAGAACAG 58.934 50.000 0.00 0.00 37.43 3.16
2323 2706 1.648467 GGCATCCAAGTGCTCGGTTC 61.648 60.000 0.00 0.00 44.45 3.62
2340 2723 2.041115 GGCCTCTCAAAGAACGGGC 61.041 63.158 0.00 0.00 38.92 6.13
2349 2732 1.202927 CCTCACCAAAAGGCCTCTCAA 60.203 52.381 5.23 0.00 0.00 3.02
2352 2735 1.376649 ATCCTCACCAAAAGGCCTCT 58.623 50.000 5.23 0.00 33.65 3.69
2355 2738 4.711846 AGAATTAATCCTCACCAAAAGGCC 59.288 41.667 0.00 0.00 33.65 5.19
2356 2739 5.418840 TCAGAATTAATCCTCACCAAAAGGC 59.581 40.000 0.00 0.00 33.65 4.35
2357 2740 7.466746 TTCAGAATTAATCCTCACCAAAAGG 57.533 36.000 0.00 0.00 35.05 3.11
2358 2741 8.526147 ACATTCAGAATTAATCCTCACCAAAAG 58.474 33.333 0.00 0.00 0.00 2.27
2363 2746 7.094205 ACAACACATTCAGAATTAATCCTCACC 60.094 37.037 0.00 0.00 0.00 4.02
2402 2786 2.346766 TTCAGTGTCAACCTGCACAT 57.653 45.000 0.00 0.00 38.02 3.21
2466 2850 2.256117 ACGGTTTTAGAGTTGCTGCT 57.744 45.000 0.00 0.00 0.00 4.24
2471 2855 4.276460 CGGACAAAACGGTTTTAGAGTTG 58.724 43.478 17.67 8.56 0.00 3.16
2487 2874 1.202758 ACAACATTCAGAGCCGGACAA 60.203 47.619 5.05 0.00 0.00 3.18
2491 2878 1.338105 TGAGACAACATTCAGAGCCGG 60.338 52.381 0.00 0.00 0.00 6.13
2492 2879 1.728971 GTGAGACAACATTCAGAGCCG 59.271 52.381 0.00 0.00 0.00 5.52
2493 2880 2.999355 GAGTGAGACAACATTCAGAGCC 59.001 50.000 0.00 0.00 0.00 4.70
2494 2881 3.431572 GTGAGTGAGACAACATTCAGAGC 59.568 47.826 0.00 0.00 37.24 4.09
2495 2882 3.993081 GGTGAGTGAGACAACATTCAGAG 59.007 47.826 0.00 0.00 37.24 3.35
2496 2883 3.387699 TGGTGAGTGAGACAACATTCAGA 59.612 43.478 0.00 0.00 37.24 3.27
2662 3057 8.801882 ATTTTCGGGTATAGTTTTGAAGATGA 57.198 30.769 0.00 0.00 0.00 2.92
2681 3076 1.328680 CTGCCATGGAGTCGATTTTCG 59.671 52.381 18.40 0.00 42.10 3.46
2702 3098 0.038159 ACTCCGAACCGAAGCTTCTG 60.038 55.000 23.50 19.47 0.00 3.02
2707 3103 2.087009 CGACACTCCGAACCGAAGC 61.087 63.158 0.00 0.00 0.00 3.86
2727 3123 3.739300 TGTACAGACGCTTCAGTAAAAGC 59.261 43.478 0.00 0.00 46.54 3.51
2728 3124 7.757097 ATATGTACAGACGCTTCAGTAAAAG 57.243 36.000 0.33 0.00 0.00 2.27
2729 3125 7.601130 ACAATATGTACAGACGCTTCAGTAAAA 59.399 33.333 0.33 0.00 0.00 1.52
2748 3182 0.523125 CCACGCAACGGCACAATATG 60.523 55.000 0.00 0.00 41.24 1.78
3089 3524 4.051922 CGCCCATGTCTAATTACAGTCTC 58.948 47.826 0.00 0.00 31.70 3.36
3118 3553 3.395858 TTACTACGCGACAGAGCTAAC 57.604 47.619 15.93 0.00 34.40 2.34
3140 3575 6.481984 GGTACACTGACGAATAGTAGTACAC 58.518 44.000 2.52 0.00 36.06 2.90
3175 3616 8.658619 AGATCACTGCCATTTCTTCTAGATAAT 58.341 33.333 0.00 0.00 0.00 1.28
3213 3654 7.166473 GCACAATACACTGAAACTGAAAGAAAG 59.834 37.037 0.00 0.00 37.43 2.62
3234 3675 4.081752 ACATGGTCTTTTCAAAGTGCACAA 60.082 37.500 21.04 0.68 37.31 3.33
3241 3682 5.979517 GTGGAGAAACATGGTCTTTTCAAAG 59.020 40.000 8.66 0.00 34.68 2.77
3243 3684 4.036262 CGTGGAGAAACATGGTCTTTTCAA 59.964 41.667 8.66 0.00 34.68 2.69
3245 3686 3.609409 GCGTGGAGAAACATGGTCTTTTC 60.609 47.826 0.00 0.00 32.76 2.29
3246 3687 2.293399 GCGTGGAGAAACATGGTCTTTT 59.707 45.455 0.00 0.00 0.00 2.27
3247 3688 1.880027 GCGTGGAGAAACATGGTCTTT 59.120 47.619 0.00 0.00 0.00 2.52
3252 4202 0.036010 AGGAGCGTGGAGAAACATGG 60.036 55.000 0.00 0.00 0.00 3.66
3264 4214 3.266510 TCAATGCAATTAGAGGAGCGT 57.733 42.857 0.00 0.00 32.46 5.07
3265 4215 4.825546 AATCAATGCAATTAGAGGAGCG 57.174 40.909 0.00 0.00 32.46 5.03
3266 4216 6.803642 AGAAAATCAATGCAATTAGAGGAGC 58.196 36.000 0.00 0.00 32.46 4.70
3280 4335 3.445096 CCAGAAGCCGGAAGAAAATCAAT 59.555 43.478 5.05 0.00 0.00 2.57
3318 4374 3.719144 CGGTTCGGTTGTTCGGGC 61.719 66.667 0.00 0.00 0.00 6.13
3319 4375 0.108709 TATCGGTTCGGTTGTTCGGG 60.109 55.000 0.00 0.00 0.00 5.14
3322 4378 3.495753 ACTTTGTATCGGTTCGGTTGTTC 59.504 43.478 0.00 0.00 0.00 3.18
3325 4381 3.061322 TCACTTTGTATCGGTTCGGTTG 58.939 45.455 0.00 0.00 0.00 3.77
3326 4382 3.389925 TCACTTTGTATCGGTTCGGTT 57.610 42.857 0.00 0.00 0.00 4.44
3357 4414 3.323403 ACCATTTTGTATGGGTTGTGTGG 59.677 43.478 8.53 0.00 43.32 4.17
3362 4419 7.461182 TTTCTCTACCATTTTGTATGGGTTG 57.539 36.000 8.53 0.00 43.32 3.77
3365 4422 7.915397 CGAATTTTCTCTACCATTTTGTATGGG 59.085 37.037 8.53 0.00 43.32 4.00
3379 4436 7.659799 TGACTTGTTTGGATCGAATTTTCTCTA 59.340 33.333 0.00 0.00 0.00 2.43
3382 4439 6.633500 TGACTTGTTTGGATCGAATTTTCT 57.367 33.333 0.00 0.00 0.00 2.52
3407 4464 3.118738 CCACTAGACGCCTCCTTTATTGT 60.119 47.826 0.00 0.00 0.00 2.71
3490 4549 1.604604 CCCTTTCTTTTCTGACCGCA 58.395 50.000 0.00 0.00 0.00 5.69
3491 4550 0.881796 CCCCTTTCTTTTCTGACCGC 59.118 55.000 0.00 0.00 0.00 5.68
3492 4551 2.152016 GTCCCCTTTCTTTTCTGACCG 58.848 52.381 0.00 0.00 0.00 4.79
3494 4553 3.149981 CCTGTCCCCTTTCTTTTCTGAC 58.850 50.000 0.00 0.00 0.00 3.51
3495 4554 2.489073 GCCTGTCCCCTTTCTTTTCTGA 60.489 50.000 0.00 0.00 0.00 3.27
3528 4598 2.925170 AGTCTGTTCCTGCGGGCT 60.925 61.111 6.73 0.00 0.00 5.19
3611 4699 4.210093 TATGTACGGCGGGGCGTG 62.210 66.667 27.30 2.78 0.00 5.34
3612 4700 4.211502 GTATGTACGGCGGGGCGT 62.212 66.667 23.40 23.40 0.00 5.68
3646 4734 2.103736 GCGCTGGGTAGGTACGTC 59.896 66.667 0.00 0.00 0.00 4.34
3688 4778 5.671493 TCTTTCTTTCTTTCGTGGAGAAGT 58.329 37.500 0.00 0.00 40.40 3.01
3707 4807 1.718801 AGGCCTTGGATCCCTTTCTTT 59.281 47.619 9.90 0.00 0.00 2.52
3793 4905 1.566231 CCACCCTGCCCTTAGATCTTT 59.434 52.381 0.00 0.00 0.00 2.52
3877 4990 7.492524 CCTACATGTATGCAGTAGAAGAAAGA 58.507 38.462 5.91 0.00 37.92 2.52
3989 5104 5.237815 CAACAGTAACATCAAGTAGGCTGA 58.762 41.667 0.00 0.00 31.83 4.26
4010 5125 8.207545 AGTTTTTGGCTTGTTTAACATATCCAA 58.792 29.630 16.42 16.42 32.92 3.53
4016 5131 8.254508 TCAAGTAGTTTTTGGCTTGTTTAACAT 58.745 29.630 0.00 0.00 39.28 2.71
4152 5267 6.588204 TGGCTAGAATCACGTATTAATTGGT 58.412 36.000 0.00 0.00 0.00 3.67


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.