Multiple sequence alignment - TraesCS2B01G435700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G435700 chr2B 100.000 4300 0 0 1 4300 625935503 625931204 0.000000e+00 7941.0
1 TraesCS2B01G435700 chr2B 88.068 176 5 5 4139 4300 263664008 263663835 1.220000e-45 195.0
2 TraesCS2B01G435700 chr2B 94.958 119 4 1 3828 3944 784769234 784769352 7.340000e-43 185.0
3 TraesCS2B01G435700 chr2B 91.538 130 10 1 3821 3950 766070373 766070245 1.230000e-40 178.0
4 TraesCS2B01G435700 chr2B 79.755 163 23 4 4148 4300 83565958 83565796 4.550000e-20 110.0
5 TraesCS2B01G435700 chr2B 80.128 156 21 3 4155 4300 76910529 76910374 1.640000e-19 108.0
6 TraesCS2B01G435700 chr2A 91.233 3308 179 51 425 3687 672844041 672840800 0.000000e+00 4399.0
7 TraesCS2B01G435700 chr2A 80.769 390 36 27 4 376 672844949 672844582 7.090000e-68 268.0
8 TraesCS2B01G435700 chr2A 93.617 141 4 4 3942 4078 672840775 672840636 5.640000e-49 206.0
9 TraesCS2B01G435700 chr2A 94.574 129 6 1 3683 3810 12628355 12628227 9.430000e-47 198.0
10 TraesCS2B01G435700 chr2A 95.798 119 5 0 3685 3803 151265537 151265655 4.390000e-45 193.0
11 TraesCS2B01G435700 chr2D 93.322 2306 108 26 1403 3687 528084098 528081818 0.000000e+00 3363.0
12 TraesCS2B01G435700 chr2D 85.294 986 61 30 426 1365 528085046 528084099 0.000000e+00 941.0
13 TraesCS2B01G435700 chr2D 89.947 378 37 1 1 378 528085984 528085608 1.800000e-133 486.0
14 TraesCS2B01G435700 chr2D 89.796 147 6 5 3933 4078 528081714 528081576 3.420000e-41 180.0
15 TraesCS2B01G435700 chr1B 90.857 175 2 4 4139 4299 592047648 592047474 5.600000e-54 222.0
16 TraesCS2B01G435700 chr1B 94.068 118 7 0 3827 3944 120404346 120404463 3.420000e-41 180.0
17 TraesCS2B01G435700 chr5B 89.714 175 4 2 4140 4300 345519669 345519843 1.210000e-50 211.0
18 TraesCS2B01G435700 chr6A 98.305 118 2 0 3685 3802 341474557 341474440 1.570000e-49 207.0
19 TraesCS2B01G435700 chr6A 85.714 84 7 2 1652 1731 125546331 125546249 2.760000e-12 84.2
20 TraesCS2B01G435700 chr3A 97.458 118 3 0 3685 3802 10694165 10694048 7.290000e-48 202.0
21 TraesCS2B01G435700 chr3A 88.235 170 6 8 4144 4300 571908004 571907836 1.580000e-44 191.0
22 TraesCS2B01G435700 chr3A 93.333 120 8 0 3826 3945 1250703 1250584 1.230000e-40 178.0
23 TraesCS2B01G435700 chr5A 88.889 171 5 2 4144 4300 601602984 601602814 9.430000e-47 198.0
24 TraesCS2B01G435700 chr5A 88.732 71 8 0 1039 1109 699470236 699470166 2.130000e-13 87.9
25 TraesCS2B01G435700 chr1A 88.889 171 4 3 4144 4300 534647200 534647369 3.390000e-46 196.0
26 TraesCS2B01G435700 chr1A 94.017 117 6 1 3685 3801 385891909 385891794 4.420000e-40 176.0
27 TraesCS2B01G435700 chr7B 95.161 124 5 1 3685 3808 746436775 746436653 1.220000e-45 195.0
28 TraesCS2B01G435700 chr6D 95.798 119 3 2 3684 3801 436408318 436408201 1.580000e-44 191.0
29 TraesCS2B01G435700 chr6D 93.333 120 8 0 3825 3944 17166757 17166638 1.230000e-40 178.0
30 TraesCS2B01G435700 chr6B 94.309 123 6 1 3685 3807 438623455 438623334 2.040000e-43 187.0
31 TraesCS2B01G435700 chr6B 93.600 125 7 1 3828 3952 590045453 590045330 7.340000e-43 185.0
32 TraesCS2B01G435700 chr3D 93.651 126 7 1 3677 3801 489164088 489163963 2.040000e-43 187.0
33 TraesCS2B01G435700 chr3D 92.742 124 9 0 3824 3947 5478179 5478056 3.420000e-41 180.0
34 TraesCS2B01G435700 chr3D 85.882 85 8 1 1652 1732 543100961 543101045 2.130000e-13 87.9
35 TraesCS2B01G435700 chr3B 92.063 126 9 1 3828 3953 752367589 752367713 4.420000e-40 176.0
36 TraesCS2B01G435700 chr3B 89.286 140 10 5 3810 3947 564169685 564169821 2.060000e-38 171.0
37 TraesCS2B01G435700 chr4D 98.182 55 1 0 1677 1731 351457987 351457933 3.540000e-16 97.1
38 TraesCS2B01G435700 chr4D 92.308 65 5 0 1678 1742 85879195 85879131 4.580000e-15 93.5
39 TraesCS2B01G435700 chr4B 87.342 79 10 0 1031 1109 660110024 660109946 1.650000e-14 91.6
40 TraesCS2B01G435700 chr4B 90.769 65 6 0 1677 1741 504528399 504528463 2.130000e-13 87.9
41 TraesCS2B01G435700 chrUn 86.905 84 6 4 1652 1731 67785022 67785104 5.920000e-14 89.8
42 TraesCS2B01G435700 chr5D 91.045 67 5 1 1677 1743 174012095 174012030 5.920000e-14 89.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G435700 chr2B 625931204 625935503 4299 True 7941.000000 7941 100.000000 1 4300 1 chr2B.!!$R4 4299
1 TraesCS2B01G435700 chr2A 672840636 672844949 4313 True 1624.333333 4399 88.539667 4 4078 3 chr2A.!!$R2 4074
2 TraesCS2B01G435700 chr2D 528081576 528085984 4408 True 1242.500000 3363 89.589750 1 4078 4 chr2D.!!$R1 4077

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
783 1393 0.368907 CGCGTAACGGAACCATTGAG 59.631 55.000 0.0 0.0 38.44 3.02 F
1147 1786 0.621862 CCTGCCCCCTCTTCCTACTT 60.622 60.000 0.0 0.0 0.00 2.24 F
1168 1807 1.135575 GCTGGAGCTTGATTTGGTTCG 60.136 52.381 0.0 0.0 38.21 3.95 F
2760 3440 1.012486 GTACGTTGTCTTCCGCCCTG 61.012 60.000 0.0 0.0 0.00 4.45 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2428 3107 0.458669 GAATGCAGGATGGGTTGCTG 59.541 55.000 0.00 0.0 45.96 4.41 R
2598 3277 2.143122 ACACTCACATGGCTGTTAACG 58.857 47.619 0.26 0.0 31.62 3.18 R
3167 3849 2.874701 GGATGAACCTGATGAATCCACG 59.125 50.000 0.00 0.0 37.37 4.94 R
3684 4374 0.032813 ATTTCCGGACGGAGGGAGTA 60.033 55.000 13.64 0.0 46.06 2.59 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 1.737735 CATTCAGCACGCCTGTCGA 60.738 57.895 3.92 0.00 42.38 4.20
47 48 3.675348 TGGGATCAAGAAAGCATCCAT 57.325 42.857 0.00 0.00 38.32 3.41
50 51 3.568853 GGGATCAAGAAAGCATCCATCAG 59.431 47.826 0.00 0.00 38.32 2.90
52 53 2.372264 TCAAGAAAGCATCCATCAGGC 58.628 47.619 0.00 0.00 33.74 4.85
68 69 2.036006 GGCCGATGCGTTGGTTGTA 61.036 57.895 13.97 0.00 38.85 2.41
86 87 1.743394 GTAGGTGGCGGAATTTCAAGG 59.257 52.381 0.00 0.00 0.00 3.61
115 116 2.202892 CTTTCGGCGCCCCTCTAC 60.203 66.667 23.46 0.00 0.00 2.59
136 137 2.880963 CCCTTCGGCTTGAAAAACAA 57.119 45.000 0.00 0.00 35.79 2.83
154 155 2.168936 ACAAGGACGTCACTTACCAACA 59.831 45.455 18.91 0.00 0.00 3.33
164 165 4.211374 GTCACTTACCAACAGTGCACTTAG 59.789 45.833 18.94 9.89 41.37 2.18
217 218 1.269166 CAGGTCTATGTCGACAACGC 58.731 55.000 24.13 12.64 39.58 4.84
229 253 1.058695 CGACAACGCGGTAATCAAGAC 59.941 52.381 12.47 0.00 0.00 3.01
245 269 3.067833 CAAGACCCGAAAGAAGGAGAAC 58.932 50.000 0.00 0.00 0.00 3.01
250 274 3.003480 CCCGAAAGAAGGAGAACATGTC 58.997 50.000 0.00 0.00 0.00 3.06
340 371 7.588497 AAGAGTTCCTGTTGAAAAGCTATTT 57.412 32.000 0.00 0.00 33.94 1.40
347 378 8.025243 TCCTGTTGAAAAGCTATTTAGTTACG 57.975 34.615 0.00 0.00 0.00 3.18
398 926 2.200067 CTAGCCTCAGAAAGTGCATCG 58.800 52.381 0.00 0.00 0.00 3.84
402 994 0.445436 CTCAGAAAGTGCATCGTGGC 59.555 55.000 0.00 0.00 0.00 5.01
527 1137 3.009714 ACCCTTCCTCTTCCCGCC 61.010 66.667 0.00 0.00 0.00 6.13
588 1198 3.741476 CCTTTGCGGGCTGTGAGC 61.741 66.667 0.00 0.00 41.46 4.26
632 1242 2.902486 ACAATCAGACAGCTCTCTCCAA 59.098 45.455 0.00 0.00 0.00 3.53
633 1243 3.055963 ACAATCAGACAGCTCTCTCCAAG 60.056 47.826 0.00 0.00 0.00 3.61
634 1244 2.300956 TCAGACAGCTCTCTCCAAGT 57.699 50.000 0.00 0.00 0.00 3.16
635 1245 2.166829 TCAGACAGCTCTCTCCAAGTC 58.833 52.381 0.00 0.00 0.00 3.01
636 1246 1.204467 CAGACAGCTCTCTCCAAGTCC 59.796 57.143 0.00 0.00 0.00 3.85
637 1247 0.534873 GACAGCTCTCTCCAAGTCCC 59.465 60.000 0.00 0.00 0.00 4.46
638 1248 0.907230 ACAGCTCTCTCCAAGTCCCC 60.907 60.000 0.00 0.00 0.00 4.81
639 1249 0.906756 CAGCTCTCTCCAAGTCCCCA 60.907 60.000 0.00 0.00 0.00 4.96
747 1357 4.800471 CGTATGTCGGTAACCCTAAAGAAC 59.200 45.833 0.00 0.00 35.71 3.01
757 1367 2.308866 ACCCTAAAGAACCCACCATCAG 59.691 50.000 0.00 0.00 0.00 2.90
781 1391 1.225908 GCGCGTAACGGAACCATTG 60.226 57.895 8.43 0.00 43.93 2.82
782 1392 1.628447 GCGCGTAACGGAACCATTGA 61.628 55.000 8.43 0.00 43.93 2.57
783 1393 0.368907 CGCGTAACGGAACCATTGAG 59.631 55.000 0.00 0.00 38.44 3.02
787 1404 2.081462 GTAACGGAACCATTGAGGGTG 58.919 52.381 0.00 0.00 37.53 4.61
810 1432 1.040339 ACCATCGAGAGACAGGAGGC 61.040 60.000 0.00 0.00 46.97 4.70
812 1434 2.485795 ATCGAGAGACAGGAGGCGC 61.486 63.158 0.00 0.00 46.97 6.53
855 1477 1.375523 CGCTAACCACGCTTTCCCT 60.376 57.895 0.00 0.00 0.00 4.20
878 1500 1.741770 CTCTCCGAGCCCAAAACCG 60.742 63.158 0.00 0.00 0.00 4.44
890 1512 2.094752 CCCAAAACCGAGCAAAATCGAT 60.095 45.455 0.00 0.00 45.56 3.59
892 1514 3.987220 CCAAAACCGAGCAAAATCGATTT 59.013 39.130 17.60 17.60 45.56 2.17
893 1515 4.089923 CCAAAACCGAGCAAAATCGATTTC 59.910 41.667 22.93 12.05 45.56 2.17
1128 1765 2.357075 GGGATCGAAGGTTTTGACTCC 58.643 52.381 0.00 0.00 0.00 3.85
1130 1767 2.027100 GGATCGAAGGTTTTGACTCCCT 60.027 50.000 0.00 0.00 0.00 4.20
1135 1772 1.606601 GGTTTTGACTCCCTGCCCC 60.607 63.158 0.00 0.00 0.00 5.80
1147 1786 0.621862 CCTGCCCCCTCTTCCTACTT 60.622 60.000 0.00 0.00 0.00 2.24
1168 1807 1.135575 GCTGGAGCTTGATTTGGTTCG 60.136 52.381 0.00 0.00 38.21 3.95
1169 1808 2.154462 CTGGAGCTTGATTTGGTTCGT 58.846 47.619 0.00 0.00 0.00 3.85
1172 1811 2.418976 GGAGCTTGATTTGGTTCGTACC 59.581 50.000 3.92 3.92 45.26 3.34
1173 1812 3.335579 GAGCTTGATTTGGTTCGTACCT 58.664 45.455 12.78 0.00 45.27 3.08
1174 1813 3.751518 AGCTTGATTTGGTTCGTACCTT 58.248 40.909 12.78 0.00 45.27 3.50
1175 1814 3.751698 AGCTTGATTTGGTTCGTACCTTC 59.248 43.478 12.78 7.45 45.27 3.46
1185 1839 3.188460 GGTTCGTACCTTCGTACTGTACA 59.812 47.826 17.35 0.00 42.38 2.90
1189 1843 6.925610 TCGTACCTTCGTACTGTACATATT 57.074 37.500 17.35 1.01 42.38 1.28
1193 1847 7.485913 CGTACCTTCGTACTGTACATATTTTGT 59.514 37.037 17.35 7.46 42.38 2.83
1196 1850 9.143631 ACCTTCGTACTGTACATATTTTGTTAC 57.856 33.333 17.35 0.00 39.87 2.50
1205 1859 9.891828 CTGTACATATTTTGTTACTTGCTTTGA 57.108 29.630 0.00 0.00 39.87 2.69
1225 1883 3.136443 TGATGAGCTTGGGGTTATACTGG 59.864 47.826 0.00 0.00 0.00 4.00
1230 1888 3.651423 AGCTTGGGGTTATACTGGGATAC 59.349 47.826 0.00 0.00 0.00 2.24
1236 1894 4.842380 GGGGTTATACTGGGATACTTGCTA 59.158 45.833 0.00 0.00 0.00 3.49
1245 1903 3.770933 TGGGATACTTGCTACCGTAAGTT 59.229 43.478 1.41 0.00 42.36 2.66
1293 1951 3.716872 CAGGATAACAGGGTACAAGGGAT 59.283 47.826 0.00 0.00 0.00 3.85
1294 1952 3.974642 AGGATAACAGGGTACAAGGGATC 59.025 47.826 0.00 0.00 0.00 3.36
1298 1956 1.282157 ACAGGGTACAAGGGATCAAGC 59.718 52.381 0.00 0.00 0.00 4.01
1300 1958 2.771943 CAGGGTACAAGGGATCAAGCTA 59.228 50.000 0.00 0.00 0.00 3.32
1350 2008 4.221924 TGGACTGATCGTGGTCTGAATTTA 59.778 41.667 11.27 0.00 33.46 1.40
1365 2023 9.125026 GGTCTGAATTTATGATGACCAGTAATT 57.875 33.333 0.00 0.00 42.32 1.40
1425 2083 5.629435 GGCAAAGTAGTTTTCAGTTGTATGC 59.371 40.000 0.00 0.00 0.00 3.14
1460 2118 7.966812 AGGATGCAGGAGAAAACTAAAAATTT 58.033 30.769 0.00 0.00 0.00 1.82
1518 2182 3.620488 TCTATTGATTGACAGGGTTGGC 58.380 45.455 0.00 0.00 0.00 4.52
1541 2205 2.939640 GCAAATCCCTCGGCAGAGTTTA 60.940 50.000 13.02 0.00 42.86 2.01
1635 2307 4.951715 TCTAGGCGATAACAGAACACCTAA 59.048 41.667 0.00 0.00 0.00 2.69
1708 2380 2.653766 GCGGTGGCAAAACACACG 60.654 61.111 0.00 0.00 43.08 4.49
1739 2411 4.333926 CCTAGCGCTTCTTTTAGCTTTGAT 59.666 41.667 18.68 0.00 40.73 2.57
1753 2428 5.943706 AGCTTTGATATTGAGCTAGCATG 57.056 39.130 18.83 0.00 44.41 4.06
1816 2491 8.387190 AGTCATACATGATATGTTCATTGGTG 57.613 34.615 0.00 0.00 42.62 4.17
1835 2510 3.632145 GGTGGCAGTCTACATTTTATGGG 59.368 47.826 0.00 0.00 33.60 4.00
1857 2532 4.253685 GCTGAGGTTGCTAGTTATGTCAA 58.746 43.478 0.00 0.00 0.00 3.18
1898 2573 4.159506 TGGGTTATTGGCTGATGCTTTTAC 59.840 41.667 0.00 0.00 39.59 2.01
1908 2583 3.659786 TGATGCTTTTACGTGTAGCAGT 58.340 40.909 20.45 12.09 46.86 4.40
1972 2650 3.263261 GCTAGAGGTGTGAGCTTTAACC 58.737 50.000 0.00 4.85 33.28 2.85
1973 2651 3.306780 GCTAGAGGTGTGAGCTTTAACCA 60.307 47.826 13.29 0.00 35.01 3.67
1987 2665 7.071014 AGCTTTAACCAATTGTTTTGTTGTG 57.929 32.000 4.43 0.00 38.42 3.33
1995 2673 7.525759 ACCAATTGTTTTGTTGTGATTGAAAC 58.474 30.769 4.43 0.00 0.00 2.78
2010 2688 5.705441 TGATTGAAACCTACAGTTCATGGTC 59.295 40.000 0.00 0.00 37.88 4.02
2175 2853 3.807622 TCAAACTCTTGCAGGAAAGTACG 59.192 43.478 0.00 0.00 32.14 3.67
2428 3107 4.083431 TCAAGTCTCTACTGTTACTCACGC 60.083 45.833 0.00 0.00 35.62 5.34
2458 3137 1.980765 TCCTGCATTCTCTGGTGAGTT 59.019 47.619 0.00 0.00 40.98 3.01
2538 3217 3.577667 TGAGTAAATTGCATGCAGTTGC 58.422 40.909 26.64 22.71 43.07 4.17
2598 3277 7.816640 TCTAAATGACCTGTATGCTTCAAAAC 58.183 34.615 0.00 0.00 0.00 2.43
2601 3280 3.880490 TGACCTGTATGCTTCAAAACGTT 59.120 39.130 0.00 0.00 0.00 3.99
2611 3290 3.425193 GCTTCAAAACGTTAACAGCCATG 59.575 43.478 0.00 0.00 0.00 3.66
2701 3381 2.747177 AGAGGACATTCCGGTCATGTA 58.253 47.619 18.33 0.00 42.75 2.29
2702 3382 3.104512 AGAGGACATTCCGGTCATGTAA 58.895 45.455 18.33 0.00 42.75 2.41
2713 3393 3.381272 CCGGTCATGTAAAATGCCATCTT 59.619 43.478 0.00 0.00 0.00 2.40
2714 3394 4.142182 CCGGTCATGTAAAATGCCATCTTT 60.142 41.667 0.00 0.00 0.00 2.52
2760 3440 1.012486 GTACGTTGTCTTCCGCCCTG 61.012 60.000 0.00 0.00 0.00 4.45
2765 3445 2.514824 GTCTTCCGCCCTGCCATC 60.515 66.667 0.00 0.00 0.00 3.51
2981 3663 6.205784 TCTTTTAAGCCACTTCACATTTTCG 58.794 36.000 0.00 0.00 0.00 3.46
3027 3709 4.650754 TGGAAGAGAGTTTATAGACGGC 57.349 45.455 0.00 0.00 0.00 5.68
3049 3731 4.201628 GCGTGTCACTTGTTCTAATAGCTG 60.202 45.833 0.00 0.00 0.00 4.24
3167 3849 9.875675 GTTTTTGATTATCTGCTAGATGATGAC 57.124 33.333 0.00 0.00 35.37 3.06
3260 3942 1.026718 CAGGCACCGACCTTCAATCC 61.027 60.000 0.00 0.00 38.26 3.01
3280 3962 1.732259 CATAGTCGTGTCACCAAAGCC 59.268 52.381 0.00 0.00 0.00 4.35
3408 4091 7.312154 TGATTGTATTGATTCTTTTCCAACGG 58.688 34.615 0.00 0.00 0.00 4.44
3415 4098 4.402793 TGATTCTTTTCCAACGGGTTTTGA 59.597 37.500 0.00 0.00 34.93 2.69
3439 4126 4.979815 TGTGTACGCATATAGGAATTGTCG 59.020 41.667 4.65 0.00 0.00 4.35
3507 4194 3.181503 GCATAGTTGTTCAGGCATCAGTG 60.182 47.826 0.00 0.00 0.00 3.66
3510 4197 2.158769 AGTTGTTCAGGCATCAGTGTCA 60.159 45.455 0.00 0.00 30.45 3.58
3534 4223 2.590007 CTCGTATGCTGCCAGGCC 60.590 66.667 9.64 0.00 0.00 5.19
3545 4234 2.284112 CCAGGCCCAGGCAAATGT 60.284 61.111 11.50 0.00 44.11 2.71
3555 4244 2.165030 CCAGGCAAATGTTGTCATCCTC 59.835 50.000 0.00 0.00 37.85 3.71
3560 4249 2.489329 CAAATGTTGTCATCCTCCGCTT 59.511 45.455 0.00 0.00 32.56 4.68
3618 4308 2.368548 AGCATGCCGTGGTCATATTAGA 59.631 45.455 15.66 0.00 31.66 2.10
3619 4309 2.738846 GCATGCCGTGGTCATATTAGAG 59.261 50.000 6.36 0.00 0.00 2.43
3648 4338 1.889530 AACCCTGGTCTAGCGCAGTC 61.890 60.000 11.47 2.81 0.00 3.51
3683 4373 6.432607 ACAGAATATGCTGTGACAAATGAG 57.567 37.500 16.03 0.00 46.72 2.90
3684 4374 5.942236 ACAGAATATGCTGTGACAAATGAGT 59.058 36.000 16.03 0.00 46.72 3.41
3685 4375 7.105588 ACAGAATATGCTGTGACAAATGAGTA 58.894 34.615 16.03 0.00 46.72 2.59
3686 4376 7.065085 ACAGAATATGCTGTGACAAATGAGTAC 59.935 37.037 16.03 0.00 46.72 2.73
3687 4377 7.279536 CAGAATATGCTGTGACAAATGAGTACT 59.720 37.037 2.05 0.00 0.00 2.73
3688 4378 7.493971 AGAATATGCTGTGACAAATGAGTACTC 59.506 37.037 16.32 16.32 0.00 2.59
3689 4379 3.664107 TGCTGTGACAAATGAGTACTCC 58.336 45.455 20.11 4.12 0.00 3.85
3690 4380 3.003480 GCTGTGACAAATGAGTACTCCC 58.997 50.000 20.11 0.00 0.00 4.30
3691 4381 3.307059 GCTGTGACAAATGAGTACTCCCT 60.307 47.826 20.11 4.85 0.00 4.20
3692 4382 4.499183 CTGTGACAAATGAGTACTCCCTC 58.501 47.826 20.11 7.70 0.00 4.30
3693 4383 3.260884 TGTGACAAATGAGTACTCCCTCC 59.739 47.826 20.11 5.47 0.00 4.30
3694 4384 2.496070 TGACAAATGAGTACTCCCTCCG 59.504 50.000 20.11 7.52 0.00 4.63
3695 4385 2.496470 GACAAATGAGTACTCCCTCCGT 59.504 50.000 20.11 10.54 0.00 4.69
3696 4386 2.496470 ACAAATGAGTACTCCCTCCGTC 59.504 50.000 20.11 0.00 0.00 4.79
3697 4387 1.777941 AATGAGTACTCCCTCCGTCC 58.222 55.000 20.11 0.00 0.00 4.79
3698 4388 0.465824 ATGAGTACTCCCTCCGTCCG 60.466 60.000 20.11 0.00 0.00 4.79
3699 4389 1.823041 GAGTACTCCCTCCGTCCGG 60.823 68.421 12.13 0.00 0.00 5.14
3700 4390 2.262774 GAGTACTCCCTCCGTCCGGA 62.263 65.000 12.13 0.00 42.90 5.14
3701 4391 1.379044 GTACTCCCTCCGTCCGGAA 60.379 63.158 5.23 0.00 44.66 4.30
3702 4392 0.967380 GTACTCCCTCCGTCCGGAAA 60.967 60.000 5.23 0.00 44.66 3.13
3703 4393 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.000 5.23 0.00 44.66 2.17
3704 4394 0.032813 ACTCCCTCCGTCCGGAAATA 60.033 55.000 5.23 0.00 44.66 1.40
3705 4395 0.388294 CTCCCTCCGTCCGGAAATAC 59.612 60.000 5.23 0.00 44.66 1.89
3706 4396 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.00 44.66 2.12
3707 4397 0.828677 CCCTCCGTCCGGAAATACTT 59.171 55.000 5.23 0.00 44.66 2.24
3708 4398 1.472728 CCCTCCGTCCGGAAATACTTG 60.473 57.143 5.23 0.00 44.66 3.16
3709 4399 1.206371 CCTCCGTCCGGAAATACTTGT 59.794 52.381 5.23 0.00 44.66 3.16
3710 4400 2.537401 CTCCGTCCGGAAATACTTGTC 58.463 52.381 5.23 0.00 44.66 3.18
3711 4401 2.165845 CTCCGTCCGGAAATACTTGTCT 59.834 50.000 5.23 0.00 44.66 3.41
3712 4402 2.564062 TCCGTCCGGAAATACTTGTCTT 59.436 45.455 5.23 0.00 42.05 3.01
3713 4403 3.763360 TCCGTCCGGAAATACTTGTCTTA 59.237 43.478 5.23 0.00 42.05 2.10
3714 4404 4.110482 CCGTCCGGAAATACTTGTCTTAG 58.890 47.826 5.23 0.00 37.50 2.18
3715 4405 4.142315 CCGTCCGGAAATACTTGTCTTAGA 60.142 45.833 5.23 0.00 37.50 2.10
3716 4406 5.404946 CGTCCGGAAATACTTGTCTTAGAA 58.595 41.667 5.23 0.00 0.00 2.10
3717 4407 5.865552 CGTCCGGAAATACTTGTCTTAGAAA 59.134 40.000 5.23 0.00 0.00 2.52
3718 4408 6.534079 CGTCCGGAAATACTTGTCTTAGAAAT 59.466 38.462 5.23 0.00 0.00 2.17
3719 4409 7.464178 CGTCCGGAAATACTTGTCTTAGAAATG 60.464 40.741 5.23 0.00 0.00 2.32
3720 4410 7.548075 GTCCGGAAATACTTGTCTTAGAAATGA 59.452 37.037 5.23 0.00 0.00 2.57
3721 4411 8.265055 TCCGGAAATACTTGTCTTAGAAATGAT 58.735 33.333 0.00 0.00 0.00 2.45
3722 4412 8.893727 CCGGAAATACTTGTCTTAGAAATGATT 58.106 33.333 0.00 0.00 0.00 2.57
3723 4413 9.708222 CGGAAATACTTGTCTTAGAAATGATTG 57.292 33.333 0.00 0.00 0.00 2.67
3730 4420 9.918630 ACTTGTCTTAGAAATGATTGAAAATGG 57.081 29.630 0.00 0.00 0.00 3.16
3787 4477 7.611213 ACCATTCTTAAGACAAGTATTTCCG 57.389 36.000 4.18 0.00 0.00 4.30
3788 4478 6.598064 ACCATTCTTAAGACAAGTATTTCCGG 59.402 38.462 4.18 0.00 0.00 5.14
3789 4479 6.821665 CCATTCTTAAGACAAGTATTTCCGGA 59.178 38.462 4.18 0.00 0.00 5.14
3790 4480 7.201617 CCATTCTTAAGACAAGTATTTCCGGAC 60.202 40.741 1.83 0.00 0.00 4.79
3791 4481 5.404946 TCTTAAGACAAGTATTTCCGGACG 58.595 41.667 1.83 0.00 0.00 4.79
3792 4482 2.667473 AGACAAGTATTTCCGGACGG 57.333 50.000 1.83 3.96 0.00 4.79
3793 4483 2.173519 AGACAAGTATTTCCGGACGGA 58.826 47.619 1.83 9.76 43.52 4.69
3794 4484 2.165845 AGACAAGTATTTCCGGACGGAG 59.834 50.000 13.64 3.15 46.06 4.63
3795 4485 1.206371 ACAAGTATTTCCGGACGGAGG 59.794 52.381 13.64 0.00 46.06 4.30
3837 4527 6.591750 AATCAGTATATTGTACTCCCTCCG 57.408 41.667 0.00 0.00 0.00 4.63
3838 4528 5.057843 TCAGTATATTGTACTCCCTCCGT 57.942 43.478 0.00 0.00 0.00 4.69
3839 4529 5.068636 TCAGTATATTGTACTCCCTCCGTC 58.931 45.833 0.00 0.00 0.00 4.79
3843 4533 2.141011 TTGTACTCCCTCCGTCCCGA 62.141 60.000 0.00 0.00 0.00 5.14
3846 4536 0.032813 TACTCCCTCCGTCCCGAAAT 60.033 55.000 0.00 0.00 0.00 2.17
3847 4537 0.032813 ACTCCCTCCGTCCCGAAATA 60.033 55.000 0.00 0.00 0.00 1.40
3848 4538 0.388294 CTCCCTCCGTCCCGAAATAC 59.612 60.000 0.00 0.00 0.00 1.89
3849 4539 0.032813 TCCCTCCGTCCCGAAATACT 60.033 55.000 0.00 0.00 0.00 2.12
3850 4540 0.828677 CCCTCCGTCCCGAAATACTT 59.171 55.000 0.00 0.00 0.00 2.24
3851 4541 1.472728 CCCTCCGTCCCGAAATACTTG 60.473 57.143 0.00 0.00 0.00 3.16
3852 4542 1.206371 CCTCCGTCCCGAAATACTTGT 59.794 52.381 0.00 0.00 0.00 3.16
3853 4543 2.537401 CTCCGTCCCGAAATACTTGTC 58.463 52.381 0.00 0.00 0.00 3.18
3854 4544 1.135315 TCCGTCCCGAAATACTTGTCG 60.135 52.381 0.00 0.00 37.01 4.35
3863 4553 5.143916 CGAAATACTTGTCGGAAAGATGG 57.856 43.478 5.20 0.00 33.62 3.51
3864 4554 4.494199 CGAAATACTTGTCGGAAAGATGGC 60.494 45.833 5.20 0.00 33.62 4.40
3865 4555 3.914426 ATACTTGTCGGAAAGATGGCT 57.086 42.857 5.20 0.00 0.00 4.75
3867 4557 2.973945 ACTTGTCGGAAAGATGGCTAC 58.026 47.619 5.20 0.00 0.00 3.58
3868 4558 2.301870 ACTTGTCGGAAAGATGGCTACA 59.698 45.455 5.20 0.00 0.00 2.74
3872 4562 3.689161 TGTCGGAAAGATGGCTACAATTG 59.311 43.478 3.24 3.24 0.00 2.32
3873 4563 3.065371 GTCGGAAAGATGGCTACAATTGG 59.935 47.826 10.83 0.00 0.00 3.16
3874 4564 2.358898 CGGAAAGATGGCTACAATTGGG 59.641 50.000 10.83 3.41 0.00 4.12
3876 4566 3.131046 GGAAAGATGGCTACAATTGGGTG 59.869 47.826 10.83 0.43 0.00 4.61
3877 4567 3.456380 AAGATGGCTACAATTGGGTGT 57.544 42.857 10.83 0.00 35.43 4.16
3878 4568 4.584638 AAGATGGCTACAATTGGGTGTA 57.415 40.909 10.83 0.00 32.75 2.90
3880 4570 4.718961 AGATGGCTACAATTGGGTGTATC 58.281 43.478 10.83 8.03 33.59 2.24
3881 4571 4.413520 AGATGGCTACAATTGGGTGTATCT 59.586 41.667 10.83 10.03 33.59 1.98
3882 4572 5.606749 AGATGGCTACAATTGGGTGTATCTA 59.393 40.000 10.83 0.00 33.59 1.98
3883 4573 5.904984 TGGCTACAATTGGGTGTATCTAT 57.095 39.130 10.83 0.00 33.59 1.98
3884 4574 7.457852 AGATGGCTACAATTGGGTGTATCTATA 59.542 37.037 10.83 0.00 33.59 1.31
3886 4576 7.221450 TGGCTACAATTGGGTGTATCTATAAC 58.779 38.462 10.83 0.00 33.59 1.89
3887 4577 7.071950 TGGCTACAATTGGGTGTATCTATAACT 59.928 37.037 10.83 0.00 33.59 2.24
3888 4578 8.591072 GGCTACAATTGGGTGTATCTATAACTA 58.409 37.037 10.83 0.00 33.59 2.24
3889 4579 9.991906 GCTACAATTGGGTGTATCTATAACTAA 57.008 33.333 10.83 0.00 33.59 2.24
3914 4604 8.964476 AAATACGTCTAGATTCATCCATTTGT 57.036 30.769 0.00 0.00 0.00 2.83
3915 4605 8.594881 AATACGTCTAGATTCATCCATTTGTC 57.405 34.615 0.00 0.00 0.00 3.18
3916 4606 5.360591 ACGTCTAGATTCATCCATTTGTCC 58.639 41.667 0.00 0.00 0.00 4.02
3917 4607 4.445718 CGTCTAGATTCATCCATTTGTCCG 59.554 45.833 0.00 0.00 0.00 4.79
3918 4608 5.601662 GTCTAGATTCATCCATTTGTCCGA 58.398 41.667 0.00 0.00 0.00 4.55
3919 4609 5.463724 GTCTAGATTCATCCATTTGTCCGAC 59.536 44.000 0.00 0.00 0.00 4.79
3920 4610 4.220693 AGATTCATCCATTTGTCCGACA 57.779 40.909 0.00 0.00 0.00 4.35
3921 4611 4.588899 AGATTCATCCATTTGTCCGACAA 58.411 39.130 9.99 9.99 36.11 3.18
3922 4612 4.637534 AGATTCATCCATTTGTCCGACAAG 59.362 41.667 13.51 4.09 39.53 3.16
3923 4613 3.417069 TCATCCATTTGTCCGACAAGT 57.583 42.857 13.51 8.64 39.53 3.16
3924 4614 4.545208 TCATCCATTTGTCCGACAAGTA 57.455 40.909 13.51 1.28 39.53 2.24
3925 4615 5.097742 TCATCCATTTGTCCGACAAGTAT 57.902 39.130 13.51 3.62 39.53 2.12
3926 4616 5.496556 TCATCCATTTGTCCGACAAGTATT 58.503 37.500 13.51 0.00 39.53 1.89
3927 4617 5.943416 TCATCCATTTGTCCGACAAGTATTT 59.057 36.000 13.51 0.00 39.53 1.40
3928 4618 5.873179 TCCATTTGTCCGACAAGTATTTC 57.127 39.130 13.51 0.00 39.53 2.17
3929 4619 4.698304 TCCATTTGTCCGACAAGTATTTCC 59.302 41.667 13.51 0.00 39.53 3.13
3930 4620 4.436852 CCATTTGTCCGACAAGTATTTCCG 60.437 45.833 13.51 0.00 39.53 4.30
3931 4621 2.373540 TGTCCGACAAGTATTTCCGG 57.626 50.000 0.00 0.00 41.36 5.14
3938 4628 3.367087 CGACAAGTATTTCCGGACAGAGT 60.367 47.826 1.83 0.00 0.00 3.24
3944 4634 5.014858 AGTATTTCCGGACAGAGTGAGTAA 58.985 41.667 1.83 0.00 0.00 2.24
3948 4638 5.515797 TTCCGGACAGAGTGAGTAATATG 57.484 43.478 1.83 0.00 0.00 1.78
3954 4644 7.413000 CCGGACAGAGTGAGTAATATGTTTTTG 60.413 40.741 0.00 0.00 0.00 2.44
4025 4715 7.185453 GCTTGCAGAACTCTCTTTTATACATG 58.815 38.462 0.00 0.00 0.00 3.21
4026 4716 6.668541 TGCAGAACTCTCTTTTATACATGC 57.331 37.500 0.00 0.00 0.00 4.06
4078 4768 7.725818 ATCTAGTGTATGTGCAAGATTGATG 57.274 36.000 0.00 0.00 0.00 3.07
4079 4769 6.877236 TCTAGTGTATGTGCAAGATTGATGA 58.123 36.000 0.00 0.00 0.00 2.92
4080 4770 7.330262 TCTAGTGTATGTGCAAGATTGATGAA 58.670 34.615 0.00 0.00 0.00 2.57
4081 4771 6.822667 AGTGTATGTGCAAGATTGATGAAA 57.177 33.333 0.00 0.00 0.00 2.69
4082 4772 7.218228 AGTGTATGTGCAAGATTGATGAAAA 57.782 32.000 0.00 0.00 0.00 2.29
4083 4773 7.660112 AGTGTATGTGCAAGATTGATGAAAAA 58.340 30.769 0.00 0.00 0.00 1.94
4101 4791 4.450082 AAAAACACGGCTTGACTTCTTT 57.550 36.364 0.00 0.00 0.00 2.52
4102 4792 4.450082 AAAACACGGCTTGACTTCTTTT 57.550 36.364 0.00 0.00 0.00 2.27
4103 4793 5.570234 AAAACACGGCTTGACTTCTTTTA 57.430 34.783 0.00 0.00 0.00 1.52
4104 4794 4.547406 AACACGGCTTGACTTCTTTTAC 57.453 40.909 0.00 0.00 0.00 2.01
4105 4795 2.542595 ACACGGCTTGACTTCTTTTACG 59.457 45.455 0.00 0.00 0.00 3.18
4106 4796 2.096417 CACGGCTTGACTTCTTTTACGG 60.096 50.000 0.00 0.00 0.00 4.02
4107 4797 2.140717 CGGCTTGACTTCTTTTACGGT 58.859 47.619 0.00 0.00 0.00 4.83
4108 4798 2.157085 CGGCTTGACTTCTTTTACGGTC 59.843 50.000 0.00 0.00 0.00 4.79
4109 4799 2.157085 GGCTTGACTTCTTTTACGGTCG 59.843 50.000 0.00 0.00 0.00 4.79
4110 4800 3.054878 GCTTGACTTCTTTTACGGTCGA 58.945 45.455 0.00 0.00 0.00 4.20
4111 4801 3.121092 GCTTGACTTCTTTTACGGTCGAC 60.121 47.826 7.13 7.13 0.00 4.20
4112 4802 3.713858 TGACTTCTTTTACGGTCGACA 57.286 42.857 18.91 0.00 0.00 4.35
4113 4803 4.247267 TGACTTCTTTTACGGTCGACAT 57.753 40.909 18.91 7.37 0.00 3.06
4114 4804 4.232221 TGACTTCTTTTACGGTCGACATC 58.768 43.478 18.91 0.00 0.00 3.06
4115 4805 4.232221 GACTTCTTTTACGGTCGACATCA 58.768 43.478 18.91 0.00 0.00 3.07
4116 4806 4.817517 ACTTCTTTTACGGTCGACATCAT 58.182 39.130 18.91 1.53 0.00 2.45
4117 4807 5.957798 ACTTCTTTTACGGTCGACATCATA 58.042 37.500 18.91 0.51 0.00 2.15
4118 4808 5.803967 ACTTCTTTTACGGTCGACATCATAC 59.196 40.000 18.91 0.00 0.00 2.39
4119 4809 5.571784 TCTTTTACGGTCGACATCATACT 57.428 39.130 18.91 0.00 0.00 2.12
4120 4810 5.337554 TCTTTTACGGTCGACATCATACTG 58.662 41.667 18.91 0.00 0.00 2.74
4121 4811 2.768833 TACGGTCGACATCATACTGC 57.231 50.000 18.91 0.00 0.00 4.40
4122 4812 0.815095 ACGGTCGACATCATACTGCA 59.185 50.000 18.91 0.00 0.00 4.41
4123 4813 1.200483 CGGTCGACATCATACTGCAC 58.800 55.000 18.91 0.00 0.00 4.57
4124 4814 1.571919 GGTCGACATCATACTGCACC 58.428 55.000 18.91 0.00 0.00 5.01
4125 4815 1.200483 GTCGACATCATACTGCACCG 58.800 55.000 11.55 0.00 0.00 4.94
4126 4816 1.099689 TCGACATCATACTGCACCGA 58.900 50.000 0.00 0.00 0.00 4.69
4127 4817 1.474879 TCGACATCATACTGCACCGAA 59.525 47.619 0.00 0.00 0.00 4.30
4128 4818 2.094442 TCGACATCATACTGCACCGAAA 60.094 45.455 0.00 0.00 0.00 3.46
4129 4819 2.866156 CGACATCATACTGCACCGAAAT 59.134 45.455 0.00 0.00 0.00 2.17
4130 4820 4.048504 CGACATCATACTGCACCGAAATA 58.951 43.478 0.00 0.00 0.00 1.40
4131 4821 4.506288 CGACATCATACTGCACCGAAATAA 59.494 41.667 0.00 0.00 0.00 1.40
4132 4822 5.556382 CGACATCATACTGCACCGAAATAAC 60.556 44.000 0.00 0.00 0.00 1.89
4133 4823 5.428253 ACATCATACTGCACCGAAATAACT 58.572 37.500 0.00 0.00 0.00 2.24
4134 4824 6.578944 ACATCATACTGCACCGAAATAACTA 58.421 36.000 0.00 0.00 0.00 2.24
4135 4825 6.701841 ACATCATACTGCACCGAAATAACTAG 59.298 38.462 0.00 0.00 0.00 2.57
4136 4826 6.459670 TCATACTGCACCGAAATAACTAGA 57.540 37.500 0.00 0.00 0.00 2.43
4137 4827 6.869695 TCATACTGCACCGAAATAACTAGAA 58.130 36.000 0.00 0.00 0.00 2.10
4138 4828 7.324935 TCATACTGCACCGAAATAACTAGAAA 58.675 34.615 0.00 0.00 0.00 2.52
4139 4829 7.491372 TCATACTGCACCGAAATAACTAGAAAG 59.509 37.037 0.00 0.00 0.00 2.62
4140 4830 5.790593 ACTGCACCGAAATAACTAGAAAGA 58.209 37.500 0.00 0.00 0.00 2.52
4141 4831 5.869888 ACTGCACCGAAATAACTAGAAAGAG 59.130 40.000 0.00 0.00 0.00 2.85
4142 4832 4.630069 TGCACCGAAATAACTAGAAAGAGC 59.370 41.667 0.00 0.00 0.00 4.09
4143 4833 4.259850 GCACCGAAATAACTAGAAAGAGCG 60.260 45.833 0.00 0.00 0.00 5.03
4144 4834 5.100259 CACCGAAATAACTAGAAAGAGCGA 58.900 41.667 0.00 0.00 0.00 4.93
4145 4835 5.230306 CACCGAAATAACTAGAAAGAGCGAG 59.770 44.000 0.00 0.00 0.00 5.03
4146 4836 4.207429 CCGAAATAACTAGAAAGAGCGAGC 59.793 45.833 0.00 0.00 0.00 5.03
4147 4837 4.798907 CGAAATAACTAGAAAGAGCGAGCA 59.201 41.667 0.00 0.00 0.00 4.26
4148 4838 5.460419 CGAAATAACTAGAAAGAGCGAGCAT 59.540 40.000 0.00 0.00 0.00 3.79
4149 4839 6.561166 CGAAATAACTAGAAAGAGCGAGCATG 60.561 42.308 0.00 0.00 0.00 4.06
4150 4840 3.876274 AACTAGAAAGAGCGAGCATGA 57.124 42.857 0.00 0.00 0.00 3.07
4151 4841 3.157932 ACTAGAAAGAGCGAGCATGAC 57.842 47.619 0.00 0.00 0.00 3.06
4152 4842 2.757868 ACTAGAAAGAGCGAGCATGACT 59.242 45.455 0.00 0.00 0.00 3.41
4153 4843 2.292103 AGAAAGAGCGAGCATGACTC 57.708 50.000 0.00 1.69 42.47 3.36
4154 4844 1.824230 AGAAAGAGCGAGCATGACTCT 59.176 47.619 13.06 8.32 43.85 3.24
4155 4845 2.159254 AGAAAGAGCGAGCATGACTCTC 60.159 50.000 13.06 8.30 43.85 3.20
4159 4849 2.405191 CGAGCATGACTCTCGCGA 59.595 61.111 9.26 9.26 45.32 5.87
4160 4850 1.936880 CGAGCATGACTCTCGCGAC 60.937 63.158 3.71 0.00 45.32 5.19
4161 4851 1.587613 GAGCATGACTCTCGCGACC 60.588 63.158 3.71 0.00 42.62 4.79
4162 4852 2.951745 GCATGACTCTCGCGACCG 60.952 66.667 3.71 0.67 0.00 4.79
4163 4853 2.951745 CATGACTCTCGCGACCGC 60.952 66.667 3.71 4.06 37.85 5.68
4211 4901 4.996434 CCGGCCGGATCTCCATGC 62.996 72.222 41.82 0.00 37.50 4.06
4212 4902 3.933722 CGGCCGGATCTCCATGCT 61.934 66.667 20.10 0.00 34.79 3.79
4213 4903 2.031768 GGCCGGATCTCCATGCTC 59.968 66.667 5.05 0.00 34.79 4.26
4214 4904 2.031768 GCCGGATCTCCATGCTCC 59.968 66.667 5.05 0.00 35.14 4.70
4217 4907 2.031768 GGATCTCCATGCTCCGGC 59.968 66.667 0.00 0.00 35.95 6.13
4218 4908 2.031768 GATCTCCATGCTCCGGCC 59.968 66.667 0.00 0.00 37.74 6.13
4219 4909 2.769621 ATCTCCATGCTCCGGCCA 60.770 61.111 2.24 0.00 37.74 5.36
4220 4910 3.112205 ATCTCCATGCTCCGGCCAC 62.112 63.158 2.24 0.00 37.74 5.01
4221 4911 4.864334 CTCCATGCTCCGGCCACC 62.864 72.222 2.24 0.00 37.74 4.61
4242 4932 4.074526 GCGTCTGCTGCTCCCAGA 62.075 66.667 0.00 0.00 41.77 3.86
4243 4933 2.898738 CGTCTGCTGCTCCCAGAT 59.101 61.111 0.00 0.00 41.77 2.90
4244 4934 1.227205 CGTCTGCTGCTCCCAGATC 60.227 63.158 0.00 0.00 41.77 2.75
4245 4935 1.145819 GTCTGCTGCTCCCAGATCC 59.854 63.158 0.00 0.00 41.77 3.36
4246 4936 2.108566 CTGCTGCTCCCAGATCCG 59.891 66.667 0.00 0.00 41.77 4.18
4247 4937 3.457625 CTGCTGCTCCCAGATCCGG 62.458 68.421 0.00 0.00 41.77 5.14
4248 4938 4.925861 GCTGCTCCCAGATCCGGC 62.926 72.222 0.00 0.00 41.77 6.13
4249 4939 4.247380 CTGCTCCCAGATCCGGCC 62.247 72.222 0.00 0.00 41.77 6.13
4250 4940 4.804420 TGCTCCCAGATCCGGCCT 62.804 66.667 0.00 0.00 0.00 5.19
4251 4941 3.934962 GCTCCCAGATCCGGCCTC 61.935 72.222 0.00 0.00 0.00 4.70
4252 4942 3.610669 CTCCCAGATCCGGCCTCG 61.611 72.222 0.00 0.00 0.00 4.63
4253 4943 4.458829 TCCCAGATCCGGCCTCGT 62.459 66.667 0.00 0.00 33.95 4.18
4254 4944 3.917760 CCCAGATCCGGCCTCGTC 61.918 72.222 0.00 0.00 33.95 4.20
4255 4945 2.835431 CCAGATCCGGCCTCGTCT 60.835 66.667 0.00 0.00 33.95 4.18
4256 4946 2.415010 CAGATCCGGCCTCGTCTG 59.585 66.667 11.98 11.98 34.68 3.51
4257 4947 3.532155 AGATCCGGCCTCGTCTGC 61.532 66.667 0.00 0.00 33.95 4.26
4258 4948 3.532155 GATCCGGCCTCGTCTGCT 61.532 66.667 0.00 0.00 33.95 4.24
4259 4949 3.492311 GATCCGGCCTCGTCTGCTC 62.492 68.421 0.00 0.00 33.95 4.26
4278 4968 1.925888 CCCCCTTCCAGGAATCAGG 59.074 63.158 1.09 0.00 37.67 3.86
4279 4969 0.921256 CCCCCTTCCAGGAATCAGGT 60.921 60.000 1.09 0.00 37.67 4.00
4280 4970 0.257039 CCCCTTCCAGGAATCAGGTG 59.743 60.000 1.09 0.00 37.67 4.00
4281 4971 0.995024 CCCTTCCAGGAATCAGGTGT 59.005 55.000 1.09 0.00 37.67 4.16
4282 4972 1.340405 CCCTTCCAGGAATCAGGTGTG 60.340 57.143 1.09 0.00 37.67 3.82
4283 4973 1.340405 CCTTCCAGGAATCAGGTGTGG 60.340 57.143 1.09 0.00 37.67 4.17
4284 4974 0.698238 TTCCAGGAATCAGGTGTGGG 59.302 55.000 0.00 0.00 0.00 4.61
4285 4975 0.178876 TCCAGGAATCAGGTGTGGGA 60.179 55.000 0.00 0.00 0.00 4.37
4286 4976 0.698238 CCAGGAATCAGGTGTGGGAA 59.302 55.000 0.00 0.00 0.00 3.97
4287 4977 1.614317 CCAGGAATCAGGTGTGGGAAC 60.614 57.143 0.00 0.00 0.00 3.62
4288 4978 1.352352 CAGGAATCAGGTGTGGGAACT 59.648 52.381 0.00 0.00 0.00 3.01
4289 4979 1.352352 AGGAATCAGGTGTGGGAACTG 59.648 52.381 0.00 0.00 0.00 3.16
4290 4980 1.073923 GGAATCAGGTGTGGGAACTGT 59.926 52.381 0.00 0.00 34.02 3.55
4291 4981 2.154462 GAATCAGGTGTGGGAACTGTG 58.846 52.381 0.00 0.00 34.02 3.66
4292 4982 0.250901 ATCAGGTGTGGGAACTGTGC 60.251 55.000 0.00 0.00 34.02 4.57
4293 4983 1.898574 CAGGTGTGGGAACTGTGCC 60.899 63.158 0.00 0.00 35.31 5.01
4294 4984 2.597510 GGTGTGGGAACTGTGCCC 60.598 66.667 17.72 17.72 46.22 5.36
4295 4985 2.597510 GTGTGGGAACTGTGCCCC 60.598 66.667 21.56 15.46 45.40 5.80
4296 4986 4.263572 TGTGGGAACTGTGCCCCG 62.264 66.667 21.56 0.00 45.40 5.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 3.675348 TGGATGCTTTCTTGATCCCAT 57.325 42.857 0.00 0.00 35.67 4.00
47 48 3.545124 AACCAACGCATCGGCCTGA 62.545 57.895 0.00 0.00 36.38 3.86
50 51 1.977594 CTACAACCAACGCATCGGCC 61.978 60.000 0.00 0.00 36.38 6.13
52 53 0.672401 ACCTACAACCAACGCATCGG 60.672 55.000 0.00 0.00 0.00 4.18
68 69 1.250840 GCCTTGAAATTCCGCCACCT 61.251 55.000 0.00 0.00 0.00 4.00
86 87 3.110178 CGAAAGGGGTGACGACGC 61.110 66.667 0.00 0.00 0.00 5.19
136 137 2.037144 ACTGTTGGTAAGTGACGTCCT 58.963 47.619 14.12 6.92 0.00 3.85
142 143 3.275617 AAGTGCACTGTTGGTAAGTGA 57.724 42.857 22.49 0.00 46.55 3.41
190 191 6.762702 TGTCGACATAGACCTGTATGTTTA 57.237 37.500 15.76 0.00 42.52 2.01
229 253 3.003480 GACATGTTCTCCTTCTTTCGGG 58.997 50.000 0.00 0.00 0.00 5.14
245 269 2.349590 TCTGTCAGATTTGCCGACATG 58.650 47.619 0.00 0.00 38.87 3.21
250 274 0.994995 CGTCTCTGTCAGATTTGCCG 59.005 55.000 2.22 0.00 32.08 5.69
340 371 7.615403 TCTTTACAGGAGACTCTACGTAACTA 58.385 38.462 1.74 0.00 40.21 2.24
347 378 7.477494 GTCTCAATCTTTACAGGAGACTCTAC 58.523 42.308 11.65 0.00 46.75 2.59
451 1060 1.443194 CGTCAGGACACCGTTACCG 60.443 63.158 0.00 0.00 0.00 4.02
464 1074 4.504916 CTGGCCGCTCCTCGTCAG 62.505 72.222 0.00 0.00 36.19 3.51
481 1091 1.209261 CTCTTCTGGGAAGAGGAAGGC 59.791 57.143 22.42 0.00 39.96 4.35
482 1092 2.499693 GACTCTTCTGGGAAGAGGAAGG 59.500 54.545 29.07 13.76 46.05 3.46
484 1094 3.260269 TGACTCTTCTGGGAAGAGGAA 57.740 47.619 29.07 19.13 46.05 3.36
486 1096 3.867984 GCTTTGACTCTTCTGGGAAGAGG 60.868 52.174 29.07 17.78 46.05 3.69
585 1195 1.960612 AGTCACGACTCACAGGCTC 59.039 57.895 0.00 0.00 36.92 4.70
632 1242 0.038744 CTTGCTTGGTGATGGGGACT 59.961 55.000 0.00 0.00 0.00 3.85
633 1243 0.038166 TCTTGCTTGGTGATGGGGAC 59.962 55.000 0.00 0.00 0.00 4.46
634 1244 0.038166 GTCTTGCTTGGTGATGGGGA 59.962 55.000 0.00 0.00 0.00 4.81
635 1245 0.038744 AGTCTTGCTTGGTGATGGGG 59.961 55.000 0.00 0.00 0.00 4.96
636 1246 1.171308 CAGTCTTGCTTGGTGATGGG 58.829 55.000 0.00 0.00 0.00 4.00
637 1247 2.189594 TCAGTCTTGCTTGGTGATGG 57.810 50.000 0.00 0.00 0.00 3.51
638 1248 2.095364 GCTTCAGTCTTGCTTGGTGATG 60.095 50.000 0.00 0.00 0.00 3.07
639 1249 2.157738 GCTTCAGTCTTGCTTGGTGAT 58.842 47.619 0.00 0.00 0.00 3.06
725 1335 5.111989 GGTTCTTTAGGGTTACCGACATAC 58.888 45.833 0.00 0.00 43.47 2.39
726 1336 4.162131 GGGTTCTTTAGGGTTACCGACATA 59.838 45.833 0.00 0.00 43.47 2.29
730 1340 2.302733 GTGGGTTCTTTAGGGTTACCGA 59.697 50.000 0.00 0.00 43.47 4.69
734 1344 3.917629 TGATGGTGGGTTCTTTAGGGTTA 59.082 43.478 0.00 0.00 0.00 2.85
735 1345 2.719705 TGATGGTGGGTTCTTTAGGGTT 59.280 45.455 0.00 0.00 0.00 4.11
747 1357 3.138798 GCTGCAGCTGATGGTGGG 61.139 66.667 31.33 0.00 41.57 4.61
781 1391 1.407258 CTCTCGATGGTCTTCACCCTC 59.593 57.143 0.00 0.00 42.99 4.30
782 1392 1.006043 TCTCTCGATGGTCTTCACCCT 59.994 52.381 0.00 0.00 42.99 4.34
783 1393 1.135333 GTCTCTCGATGGTCTTCACCC 59.865 57.143 0.00 0.00 42.99 4.61
787 1404 2.357637 CTCCTGTCTCTCGATGGTCTTC 59.642 54.545 0.00 0.00 0.00 2.87
810 1432 3.374678 GGATTATCTAGGAGAGTACCGCG 59.625 52.174 0.00 0.00 34.73 6.46
812 1434 4.871557 CGAGGATTATCTAGGAGAGTACCG 59.128 50.000 0.00 0.00 34.73 4.02
878 1500 2.848302 CCGCTTGAAATCGATTTTGCTC 59.152 45.455 23.49 12.10 0.00 4.26
998 1620 3.049674 CGTTCTGTGCCGCCATGT 61.050 61.111 0.00 0.00 0.00 3.21
1128 1765 0.621862 AAGTAGGAAGAGGGGGCAGG 60.622 60.000 0.00 0.00 0.00 4.85
1130 1767 1.562672 GCAAGTAGGAAGAGGGGGCA 61.563 60.000 0.00 0.00 0.00 5.36
1135 1772 1.134551 GCTCCAGCAAGTAGGAAGAGG 60.135 57.143 0.00 0.00 41.59 3.69
1147 1786 1.888512 GAACCAAATCAAGCTCCAGCA 59.111 47.619 0.48 0.00 45.16 4.41
1168 1807 8.693542 ACAAAATATGTACAGTACGAAGGTAC 57.306 34.615 0.33 10.99 44.01 3.34
1174 1813 8.649841 GCAAGTAACAAAATATGTACAGTACGA 58.350 33.333 0.33 0.00 42.99 3.43
1175 1814 8.653338 AGCAAGTAACAAAATATGTACAGTACG 58.347 33.333 0.33 0.00 42.99 3.67
1185 1839 8.526147 AGCTCATCAAAGCAAGTAACAAAATAT 58.474 29.630 0.00 0.00 45.00 1.28
1189 1843 5.772825 AGCTCATCAAAGCAAGTAACAAA 57.227 34.783 0.00 0.00 45.00 2.83
1193 1847 3.507233 CCCAAGCTCATCAAAGCAAGTAA 59.493 43.478 0.00 0.00 45.00 2.24
1196 1850 1.203994 CCCCAAGCTCATCAAAGCAAG 59.796 52.381 0.00 0.00 45.00 4.01
1205 1859 2.443255 CCCAGTATAACCCCAAGCTCAT 59.557 50.000 0.00 0.00 0.00 2.90
1225 1883 4.565564 CACAACTTACGGTAGCAAGTATCC 59.434 45.833 0.00 0.00 33.06 2.59
1230 1888 2.993899 CTCCACAACTTACGGTAGCAAG 59.006 50.000 0.00 0.00 0.00 4.01
1236 1894 2.967887 AGTAACCTCCACAACTTACGGT 59.032 45.455 0.00 0.00 0.00 4.83
1245 1903 1.429930 TCCAAGCAGTAACCTCCACA 58.570 50.000 0.00 0.00 0.00 4.17
1293 1951 3.178046 TCTGTAACCACCCATAGCTTGA 58.822 45.455 0.00 0.00 0.00 3.02
1294 1952 3.627395 TCTGTAACCACCCATAGCTTG 57.373 47.619 0.00 0.00 0.00 4.01
1298 1956 5.126067 CCTCAAATCTGTAACCACCCATAG 58.874 45.833 0.00 0.00 0.00 2.23
1300 1958 3.309121 CCCTCAAATCTGTAACCACCCAT 60.309 47.826 0.00 0.00 0.00 4.00
1365 2023 7.172019 GGTTTAAGCTGCTTGTTTACTACAGTA 59.828 37.037 24.35 0.00 38.19 2.74
1366 2024 6.017357 GGTTTAAGCTGCTTGTTTACTACAGT 60.017 38.462 24.35 0.00 38.19 3.55
1367 2025 6.017440 TGGTTTAAGCTGCTTGTTTACTACAG 60.017 38.462 24.35 0.00 38.19 2.74
1368 2026 5.823570 TGGTTTAAGCTGCTTGTTTACTACA 59.176 36.000 24.35 9.57 34.12 2.74
1369 2027 6.308371 TGGTTTAAGCTGCTTGTTTACTAC 57.692 37.500 24.35 10.75 0.00 2.73
1425 2083 3.574396 TCTCCTGCATCCTATAACTTCCG 59.426 47.826 0.00 0.00 0.00 4.30
1460 2118 6.550843 TCGTTATAATTCACGACCGTTCTTA 58.449 36.000 3.92 0.00 40.43 2.10
1490 2148 5.667626 ACCCTGTCAATCAATAGATACACCT 59.332 40.000 0.00 0.00 33.08 4.00
1518 2182 3.204827 CTGCCGAGGGATTTGCCG 61.205 66.667 0.00 0.00 37.63 5.69
1541 2205 3.151554 ACATGACTGCAACATCACACAT 58.848 40.909 0.00 0.00 0.00 3.21
1607 2273 2.375146 TCTGTTATCGCCTAGAGCACA 58.625 47.619 0.00 0.00 44.04 4.57
1609 2275 2.758423 TGTTCTGTTATCGCCTAGAGCA 59.242 45.455 0.00 0.00 44.04 4.26
1660 2332 1.416030 TCTGAAGCACACACCTAAGCA 59.584 47.619 0.00 0.00 0.00 3.91
1666 2338 1.597937 CGCTTTTCTGAAGCACACACC 60.598 52.381 10.88 0.00 43.15 4.16
1739 2411 5.922053 ACATTCAGTCATGCTAGCTCAATA 58.078 37.500 17.23 0.00 0.00 1.90
1753 2428 5.300969 TCATTAGCTGCAAACATTCAGTC 57.699 39.130 1.02 0.00 33.09 3.51
1816 2491 3.316308 CAGCCCATAAAATGTAGACTGCC 59.684 47.826 0.00 0.00 0.00 4.85
1835 2510 3.861840 TGACATAACTAGCAACCTCAGC 58.138 45.455 0.00 0.00 0.00 4.26
1873 2548 3.036452 AGCATCAGCCAATAACCCAAT 57.964 42.857 0.00 0.00 43.56 3.16
1898 2573 6.626199 AAAAACAAAAGAAACTGCTACACG 57.374 33.333 0.00 0.00 0.00 4.49
1972 2650 7.750769 AGGTTTCAATCACAACAAAACAATTG 58.249 30.769 3.24 3.24 32.75 2.32
1973 2651 7.920160 AGGTTTCAATCACAACAAAACAATT 57.080 28.000 0.00 0.00 32.75 2.32
1987 2665 5.940470 AGACCATGAACTGTAGGTTTCAATC 59.060 40.000 0.00 0.00 38.41 2.67
1995 2673 3.981071 TTCCAGACCATGAACTGTAGG 57.019 47.619 14.57 2.79 32.93 3.18
2151 2829 4.639135 ACTTTCCTGCAAGAGTTTGAAC 57.361 40.909 0.00 0.00 36.36 3.18
2428 3107 0.458669 GAATGCAGGATGGGTTGCTG 59.541 55.000 0.00 0.00 45.96 4.41
2458 3137 2.205022 AATGCAGGCACTAGAAGCAA 57.795 45.000 12.59 0.00 38.85 3.91
2559 3238 8.783093 CAGGTCATTTAGAATGTGAACTACAAA 58.217 33.333 0.00 0.00 43.77 2.83
2598 3277 2.143122 ACACTCACATGGCTGTTAACG 58.857 47.619 0.26 0.00 31.62 3.18
2601 3280 6.106003 CAGTATAACACTCACATGGCTGTTA 58.894 40.000 0.00 3.72 34.26 2.41
2611 3290 8.770828 ACATACAACAAACAGTATAACACTCAC 58.229 33.333 0.00 0.00 34.26 3.51
2701 3381 6.592607 CAGATTTACTGCAAAGATGGCATTTT 59.407 34.615 0.00 0.00 41.06 1.82
2702 3382 6.103997 CAGATTTACTGCAAAGATGGCATTT 58.896 36.000 0.00 0.00 41.06 2.32
2948 3630 7.440255 GTGAAGTGGCTTAAAAGAGTGTAGTAA 59.560 37.037 0.00 0.00 0.00 2.24
2981 3663 3.273434 TGGACAAGTATCAGCATTCAGC 58.727 45.455 0.00 0.00 46.19 4.26
3027 3709 4.327357 CCAGCTATTAGAACAAGTGACACG 59.673 45.833 0.00 0.00 0.00 4.49
3049 3731 5.690997 ACAGAAGTTCGAAAGGAAAATCC 57.309 39.130 0.00 0.00 36.14 3.01
3120 3802 7.586714 AAACAGCTAAATGTTAGGTACGTAC 57.413 36.000 17.56 17.56 42.49 3.67
3121 3803 8.497554 CAAAAACAGCTAAATGTTAGGTACGTA 58.502 33.333 0.00 0.00 42.49 3.57
3122 3804 7.227116 TCAAAAACAGCTAAATGTTAGGTACGT 59.773 33.333 0.00 0.00 42.49 3.57
3123 3805 7.577979 TCAAAAACAGCTAAATGTTAGGTACG 58.422 34.615 0.00 0.00 42.49 3.67
3124 3806 9.908152 AATCAAAAACAGCTAAATGTTAGGTAC 57.092 29.630 0.00 0.00 42.49 3.34
3167 3849 2.874701 GGATGAACCTGATGAATCCACG 59.125 50.000 0.00 0.00 37.37 4.94
3260 3942 1.732259 GGCTTTGGTGACACGACTATG 59.268 52.381 0.00 0.00 42.67 2.23
3280 3962 8.006590 GGATAATTCAAACGAGATCTTTCGATG 58.993 37.037 10.96 9.14 43.03 3.84
3408 4091 5.756347 TCCTATATGCGTACACATCAAAACC 59.244 40.000 0.00 0.00 0.00 3.27
3415 4098 5.633601 CGACAATTCCTATATGCGTACACAT 59.366 40.000 1.40 1.40 0.00 3.21
3439 4126 5.842907 AGTTGCAAAATCACTTCTTTACCC 58.157 37.500 0.00 0.00 0.00 3.69
3507 4194 2.029728 GCAGCATACGAGAACACATGAC 59.970 50.000 0.00 0.00 0.00 3.06
3510 4197 1.066215 TGGCAGCATACGAGAACACAT 60.066 47.619 0.00 0.00 0.00 3.21
3534 4223 2.165030 GAGGATGACAACATTTGCCTGG 59.835 50.000 0.00 0.00 36.82 4.45
3545 4234 2.358957 CATTGAAGCGGAGGATGACAA 58.641 47.619 0.00 0.00 0.00 3.18
3555 4244 1.742761 ACATCAGACCATTGAAGCGG 58.257 50.000 0.00 0.00 0.00 5.52
3560 4249 4.909001 TCATCACAACATCAGACCATTGA 58.091 39.130 0.00 0.00 0.00 2.57
3618 4308 0.106015 ACCAGGGTTTCAAGCTTGCT 60.106 50.000 21.99 9.57 32.87 3.91
3619 4309 0.315251 GACCAGGGTTTCAAGCTTGC 59.685 55.000 21.99 7.79 32.87 4.01
3648 4338 2.684001 TATTCTGTGGCCGTACAAGG 57.316 50.000 0.00 0.00 0.00 3.61
3681 4371 1.823041 CCGGACGGAGGGAGTACTC 60.823 68.421 14.87 14.87 37.50 2.59
3682 4372 1.856539 TTCCGGACGGAGGGAGTACT 61.857 60.000 13.64 0.00 46.06 2.73
3683 4373 0.967380 TTTCCGGACGGAGGGAGTAC 60.967 60.000 13.64 0.00 46.06 2.73
3684 4374 0.032813 ATTTCCGGACGGAGGGAGTA 60.033 55.000 13.64 0.00 46.06 2.59
3685 4375 0.032813 TATTTCCGGACGGAGGGAGT 60.033 55.000 13.64 0.00 46.06 3.85
3686 4376 0.388294 GTATTTCCGGACGGAGGGAG 59.612 60.000 13.64 0.00 46.06 4.30
3687 4377 0.032813 AGTATTTCCGGACGGAGGGA 60.033 55.000 13.64 4.95 46.06 4.20
3688 4378 0.828677 AAGTATTTCCGGACGGAGGG 59.171 55.000 13.64 0.00 46.06 4.30
3689 4379 1.206371 ACAAGTATTTCCGGACGGAGG 59.794 52.381 13.64 0.00 46.06 4.30
3690 4380 2.165845 AGACAAGTATTTCCGGACGGAG 59.834 50.000 13.64 3.15 46.06 4.63
3691 4381 2.173519 AGACAAGTATTTCCGGACGGA 58.826 47.619 1.83 9.76 43.52 4.69
3692 4382 2.667473 AGACAAGTATTTCCGGACGG 57.333 50.000 1.83 3.96 0.00 4.79
3693 4383 4.990257 TCTAAGACAAGTATTTCCGGACG 58.010 43.478 1.83 0.00 0.00 4.79
3694 4384 7.548075 TCATTTCTAAGACAAGTATTTCCGGAC 59.452 37.037 1.83 0.00 0.00 4.79
3695 4385 7.617225 TCATTTCTAAGACAAGTATTTCCGGA 58.383 34.615 0.00 0.00 0.00 5.14
3696 4386 7.843490 TCATTTCTAAGACAAGTATTTCCGG 57.157 36.000 0.00 0.00 0.00 5.14
3697 4387 9.708222 CAATCATTTCTAAGACAAGTATTTCCG 57.292 33.333 0.00 0.00 0.00 4.30
3704 4394 9.918630 CCATTTTCAATCATTTCTAAGACAAGT 57.081 29.630 0.00 0.00 0.00 3.16
3761 4451 9.158233 CGGAAATACTTGTCTTAAGAATGGTTA 57.842 33.333 6.78 0.00 0.00 2.85
3762 4452 7.120726 CCGGAAATACTTGTCTTAAGAATGGTT 59.879 37.037 6.78 0.00 0.00 3.67
3763 4453 6.598064 CCGGAAATACTTGTCTTAAGAATGGT 59.402 38.462 6.78 8.46 0.00 3.55
3764 4454 6.821665 TCCGGAAATACTTGTCTTAAGAATGG 59.178 38.462 6.78 2.76 0.00 3.16
3765 4455 7.464178 CGTCCGGAAATACTTGTCTTAAGAATG 60.464 40.741 5.23 3.11 0.00 2.67
3766 4456 6.534079 CGTCCGGAAATACTTGTCTTAAGAAT 59.466 38.462 5.23 0.00 0.00 2.40
3767 4457 5.865552 CGTCCGGAAATACTTGTCTTAAGAA 59.134 40.000 5.23 0.00 0.00 2.52
3768 4458 5.404946 CGTCCGGAAATACTTGTCTTAAGA 58.595 41.667 5.23 0.00 0.00 2.10
3769 4459 4.565564 CCGTCCGGAAATACTTGTCTTAAG 59.434 45.833 5.23 0.00 37.50 1.85
3770 4460 4.220382 TCCGTCCGGAAATACTTGTCTTAA 59.780 41.667 5.23 0.00 42.05 1.85
3771 4461 3.763360 TCCGTCCGGAAATACTTGTCTTA 59.237 43.478 5.23 0.00 42.05 2.10
3772 4462 2.564062 TCCGTCCGGAAATACTTGTCTT 59.436 45.455 5.23 0.00 42.05 3.01
3773 4463 2.165845 CTCCGTCCGGAAATACTTGTCT 59.834 50.000 5.23 0.00 44.66 3.41
3774 4464 2.537401 CTCCGTCCGGAAATACTTGTC 58.463 52.381 5.23 0.00 44.66 3.18
3775 4465 1.206371 CCTCCGTCCGGAAATACTTGT 59.794 52.381 5.23 0.00 44.66 3.16
3776 4466 1.472728 CCCTCCGTCCGGAAATACTTG 60.473 57.143 5.23 0.00 44.66 3.16
3777 4467 0.828677 CCCTCCGTCCGGAAATACTT 59.171 55.000 5.23 0.00 44.66 2.24
3778 4468 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.00 44.66 2.12
3779 4469 0.388294 CTCCCTCCGTCCGGAAATAC 59.612 60.000 5.23 0.00 44.66 1.89
3780 4470 0.032813 ACTCCCTCCGTCCGGAAATA 60.033 55.000 5.23 0.00 44.66 1.40
3781 4471 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.000 5.23 0.00 44.66 2.17
3782 4472 0.967380 GTACTCCCTCCGTCCGGAAA 60.967 60.000 5.23 0.00 44.66 3.13
3783 4473 1.379044 GTACTCCCTCCGTCCGGAA 60.379 63.158 5.23 0.00 44.66 4.30
3784 4474 2.273449 GTACTCCCTCCGTCCGGA 59.727 66.667 0.00 0.00 42.90 5.14
3785 4475 2.832201 GGTACTCCCTCCGTCCGG 60.832 72.222 0.00 0.00 0.00 5.14
3786 4476 1.455217 ATGGTACTCCCTCCGTCCG 60.455 63.158 0.00 0.00 0.00 4.79
3787 4477 0.686769 ACATGGTACTCCCTCCGTCC 60.687 60.000 0.00 0.00 0.00 4.79
3788 4478 2.062971 TACATGGTACTCCCTCCGTC 57.937 55.000 0.00 0.00 0.00 4.79
3789 4479 2.537633 TTACATGGTACTCCCTCCGT 57.462 50.000 0.00 0.00 0.00 4.69
3790 4480 3.231818 AGATTACATGGTACTCCCTCCG 58.768 50.000 0.00 0.00 0.00 4.63
3791 4481 6.742559 TTAAGATTACATGGTACTCCCTCC 57.257 41.667 0.00 0.00 0.00 4.30
3792 4482 8.429641 TGATTTAAGATTACATGGTACTCCCTC 58.570 37.037 0.00 0.00 0.00 4.30
3793 4483 8.331931 TGATTTAAGATTACATGGTACTCCCT 57.668 34.615 0.00 0.00 0.00 4.20
3794 4484 8.211629 ACTGATTTAAGATTACATGGTACTCCC 58.788 37.037 0.00 0.00 0.00 4.30
3843 4533 4.589908 AGCCATCTTTCCGACAAGTATTT 58.410 39.130 0.00 0.00 0.00 1.40
3846 4536 3.512329 TGTAGCCATCTTTCCGACAAGTA 59.488 43.478 0.00 0.00 0.00 2.24
3847 4537 2.301870 TGTAGCCATCTTTCCGACAAGT 59.698 45.455 0.00 0.00 0.00 3.16
3848 4538 2.972625 TGTAGCCATCTTTCCGACAAG 58.027 47.619 0.00 0.00 0.00 3.16
3849 4539 3.410631 TTGTAGCCATCTTTCCGACAA 57.589 42.857 0.00 0.00 0.00 3.18
3850 4540 3.627395 ATTGTAGCCATCTTTCCGACA 57.373 42.857 0.00 0.00 0.00 4.35
3851 4541 3.065371 CCAATTGTAGCCATCTTTCCGAC 59.935 47.826 4.43 0.00 0.00 4.79
3852 4542 3.278574 CCAATTGTAGCCATCTTTCCGA 58.721 45.455 4.43 0.00 0.00 4.55
3853 4543 2.358898 CCCAATTGTAGCCATCTTTCCG 59.641 50.000 4.43 0.00 0.00 4.30
3854 4544 3.131046 CACCCAATTGTAGCCATCTTTCC 59.869 47.826 4.43 0.00 0.00 3.13
3855 4545 3.763897 ACACCCAATTGTAGCCATCTTTC 59.236 43.478 4.43 0.00 0.00 2.62
3856 4546 3.778265 ACACCCAATTGTAGCCATCTTT 58.222 40.909 4.43 0.00 0.00 2.52
3858 4548 4.413520 AGATACACCCAATTGTAGCCATCT 59.586 41.667 4.43 4.32 38.84 2.90
3859 4549 4.718961 AGATACACCCAATTGTAGCCATC 58.281 43.478 4.43 2.14 38.84 3.51
3860 4550 4.796110 AGATACACCCAATTGTAGCCAT 57.204 40.909 4.43 0.00 38.84 4.40
3862 4552 7.450903 AGTTATAGATACACCCAATTGTAGCC 58.549 38.462 4.43 0.00 38.84 3.93
3863 4553 9.991906 TTAGTTATAGATACACCCAATTGTAGC 57.008 33.333 4.43 0.00 38.42 3.58
3888 4578 9.396022 ACAAATGGATGAATCTAGACGTATTTT 57.604 29.630 0.00 0.00 0.00 1.82
3889 4579 8.964476 ACAAATGGATGAATCTAGACGTATTT 57.036 30.769 0.00 0.00 0.00 1.40
3890 4580 7.657761 GGACAAATGGATGAATCTAGACGTATT 59.342 37.037 0.00 0.00 0.00 1.89
3891 4581 7.155328 GGACAAATGGATGAATCTAGACGTAT 58.845 38.462 0.00 0.00 0.00 3.06
3893 4583 5.360591 GGACAAATGGATGAATCTAGACGT 58.639 41.667 0.00 0.00 0.00 4.34
3894 4584 4.445718 CGGACAAATGGATGAATCTAGACG 59.554 45.833 0.00 0.00 0.00 4.18
3895 4585 5.463724 GTCGGACAAATGGATGAATCTAGAC 59.536 44.000 2.62 0.00 0.00 2.59
3897 4587 5.359756 TGTCGGACAAATGGATGAATCTAG 58.640 41.667 8.68 0.00 0.00 2.43
3899 4589 4.220693 TGTCGGACAAATGGATGAATCT 57.779 40.909 8.68 0.00 0.00 2.40
3900 4590 4.396166 ACTTGTCGGACAAATGGATGAATC 59.604 41.667 22.60 0.00 37.69 2.52
3901 4591 4.335416 ACTTGTCGGACAAATGGATGAAT 58.665 39.130 22.60 0.19 37.69 2.57
3904 4594 5.818136 AATACTTGTCGGACAAATGGATG 57.182 39.130 22.60 13.11 37.69 3.51
3905 4595 5.357032 GGAAATACTTGTCGGACAAATGGAT 59.643 40.000 22.60 12.46 37.69 3.41
3906 4596 4.698304 GGAAATACTTGTCGGACAAATGGA 59.302 41.667 22.60 10.75 37.69 3.41
3907 4597 4.436852 CGGAAATACTTGTCGGACAAATGG 60.437 45.833 22.60 14.41 37.69 3.16
3908 4598 4.436852 CCGGAAATACTTGTCGGACAAATG 60.437 45.833 22.60 15.05 42.94 2.32
3909 4599 3.687698 CCGGAAATACTTGTCGGACAAAT 59.312 43.478 22.60 16.57 42.94 2.32
3910 4600 3.068560 CCGGAAATACTTGTCGGACAAA 58.931 45.455 22.60 10.91 42.94 2.83
3911 4601 2.299582 TCCGGAAATACTTGTCGGACAA 59.700 45.455 21.30 21.30 43.84 3.18
3912 4602 1.894466 TCCGGAAATACTTGTCGGACA 59.106 47.619 0.00 6.76 43.84 4.02
3913 4603 2.660189 TCCGGAAATACTTGTCGGAC 57.340 50.000 0.00 0.00 43.84 4.79
3914 4604 1.894466 TGTCCGGAAATACTTGTCGGA 59.106 47.619 5.23 0.00 46.06 4.55
3915 4605 2.094390 TCTGTCCGGAAATACTTGTCGG 60.094 50.000 5.23 0.00 41.80 4.79
3916 4606 3.179830 CTCTGTCCGGAAATACTTGTCG 58.820 50.000 5.23 0.00 0.00 4.35
3917 4607 3.927142 CACTCTGTCCGGAAATACTTGTC 59.073 47.826 5.23 0.00 0.00 3.18
3918 4608 3.576982 TCACTCTGTCCGGAAATACTTGT 59.423 43.478 5.23 0.00 0.00 3.16
3919 4609 4.177026 CTCACTCTGTCCGGAAATACTTG 58.823 47.826 5.23 0.00 0.00 3.16
3920 4610 3.833070 ACTCACTCTGTCCGGAAATACTT 59.167 43.478 5.23 0.00 0.00 2.24
3921 4611 3.432378 ACTCACTCTGTCCGGAAATACT 58.568 45.455 5.23 0.00 0.00 2.12
3922 4612 3.870633 ACTCACTCTGTCCGGAAATAC 57.129 47.619 5.23 0.00 0.00 1.89
3923 4613 7.287005 ACATATTACTCACTCTGTCCGGAAATA 59.713 37.037 5.23 2.80 0.00 1.40
3924 4614 6.098409 ACATATTACTCACTCTGTCCGGAAAT 59.902 38.462 5.23 0.16 0.00 2.17
3925 4615 5.421056 ACATATTACTCACTCTGTCCGGAAA 59.579 40.000 5.23 0.00 0.00 3.13
3926 4616 4.954202 ACATATTACTCACTCTGTCCGGAA 59.046 41.667 5.23 0.00 0.00 4.30
3927 4617 4.533815 ACATATTACTCACTCTGTCCGGA 58.466 43.478 0.00 0.00 0.00 5.14
3928 4618 4.920640 ACATATTACTCACTCTGTCCGG 57.079 45.455 0.00 0.00 0.00 5.14
3929 4619 7.117812 ACAAAAACATATTACTCACTCTGTCCG 59.882 37.037 0.00 0.00 0.00 4.79
3930 4620 8.324163 ACAAAAACATATTACTCACTCTGTCC 57.676 34.615 0.00 0.00 0.00 4.02
3960 4650 4.947147 GCACGGCAGACAACCCCA 62.947 66.667 0.00 0.00 0.00 4.96
4080 4770 4.450082 AAAGAAGTCAAGCCGTGTTTTT 57.550 36.364 0.00 0.00 0.00 1.94
4081 4771 4.450082 AAAAGAAGTCAAGCCGTGTTTT 57.550 36.364 0.00 0.00 0.00 2.43
4082 4772 4.495184 CGTAAAAGAAGTCAAGCCGTGTTT 60.495 41.667 0.00 0.00 0.00 2.83
4083 4773 3.001939 CGTAAAAGAAGTCAAGCCGTGTT 59.998 43.478 0.00 0.00 0.00 3.32
4084 4774 2.542595 CGTAAAAGAAGTCAAGCCGTGT 59.457 45.455 0.00 0.00 0.00 4.49
4085 4775 2.096417 CCGTAAAAGAAGTCAAGCCGTG 60.096 50.000 0.00 0.00 0.00 4.94
4086 4776 2.140717 CCGTAAAAGAAGTCAAGCCGT 58.859 47.619 0.00 0.00 0.00 5.68
4087 4777 2.140717 ACCGTAAAAGAAGTCAAGCCG 58.859 47.619 0.00 0.00 0.00 5.52
4088 4778 2.157085 CGACCGTAAAAGAAGTCAAGCC 59.843 50.000 0.00 0.00 0.00 4.35
4089 4779 3.054878 TCGACCGTAAAAGAAGTCAAGC 58.945 45.455 0.00 0.00 0.00 4.01
4090 4780 4.046462 TGTCGACCGTAAAAGAAGTCAAG 58.954 43.478 14.12 0.00 0.00 3.02
4091 4781 4.044336 TGTCGACCGTAAAAGAAGTCAA 57.956 40.909 14.12 0.00 0.00 3.18
4092 4782 3.713858 TGTCGACCGTAAAAGAAGTCA 57.286 42.857 14.12 0.00 0.00 3.41
4093 4783 4.232221 TGATGTCGACCGTAAAAGAAGTC 58.768 43.478 14.12 0.00 0.00 3.01
4094 4784 4.247267 TGATGTCGACCGTAAAAGAAGT 57.753 40.909 14.12 0.00 0.00 3.01
4095 4785 6.020599 CAGTATGATGTCGACCGTAAAAGAAG 60.021 42.308 14.12 0.00 39.69 2.85
4096 4786 5.803461 CAGTATGATGTCGACCGTAAAAGAA 59.197 40.000 14.12 0.00 39.69 2.52
4097 4787 5.337554 CAGTATGATGTCGACCGTAAAAGA 58.662 41.667 14.12 0.00 39.69 2.52
4098 4788 4.026804 GCAGTATGATGTCGACCGTAAAAG 60.027 45.833 14.12 0.00 39.69 2.27
4099 4789 3.861113 GCAGTATGATGTCGACCGTAAAA 59.139 43.478 14.12 0.00 39.69 1.52
4100 4790 3.119424 TGCAGTATGATGTCGACCGTAAA 60.119 43.478 14.12 0.00 39.69 2.01
4101 4791 2.424246 TGCAGTATGATGTCGACCGTAA 59.576 45.455 14.12 0.00 39.69 3.18
4102 4792 2.018515 TGCAGTATGATGTCGACCGTA 58.981 47.619 14.12 1.20 39.69 4.02
4103 4793 0.815095 TGCAGTATGATGTCGACCGT 59.185 50.000 14.12 0.98 39.69 4.83
4104 4794 1.200483 GTGCAGTATGATGTCGACCG 58.800 55.000 14.12 0.00 39.69 4.79
4105 4795 1.571919 GGTGCAGTATGATGTCGACC 58.428 55.000 14.12 0.00 39.69 4.79
4106 4796 1.200483 CGGTGCAGTATGATGTCGAC 58.800 55.000 9.11 9.11 39.69 4.20
4107 4797 1.099689 TCGGTGCAGTATGATGTCGA 58.900 50.000 0.00 0.00 39.69 4.20
4108 4798 1.921243 TTCGGTGCAGTATGATGTCG 58.079 50.000 0.00 0.00 39.69 4.35
4109 4799 5.523916 AGTTATTTCGGTGCAGTATGATGTC 59.476 40.000 0.00 0.00 39.69 3.06
4110 4800 5.428253 AGTTATTTCGGTGCAGTATGATGT 58.572 37.500 0.00 0.00 39.69 3.06
4111 4801 5.991328 AGTTATTTCGGTGCAGTATGATG 57.009 39.130 0.00 0.00 39.69 3.07
4112 4802 7.050970 TCTAGTTATTTCGGTGCAGTATGAT 57.949 36.000 0.00 0.00 39.69 2.45
4113 4803 6.459670 TCTAGTTATTTCGGTGCAGTATGA 57.540 37.500 0.00 0.00 39.69 2.15
4114 4804 7.491372 TCTTTCTAGTTATTTCGGTGCAGTATG 59.509 37.037 0.00 0.00 40.87 2.39
4115 4805 7.553334 TCTTTCTAGTTATTTCGGTGCAGTAT 58.447 34.615 0.00 0.00 0.00 2.12
4116 4806 6.927416 TCTTTCTAGTTATTTCGGTGCAGTA 58.073 36.000 0.00 0.00 0.00 2.74
4117 4807 5.790593 TCTTTCTAGTTATTTCGGTGCAGT 58.209 37.500 0.00 0.00 0.00 4.40
4118 4808 5.220491 GCTCTTTCTAGTTATTTCGGTGCAG 60.220 44.000 0.00 0.00 0.00 4.41
4119 4809 4.630069 GCTCTTTCTAGTTATTTCGGTGCA 59.370 41.667 0.00 0.00 0.00 4.57
4120 4810 4.259850 CGCTCTTTCTAGTTATTTCGGTGC 60.260 45.833 0.00 0.00 0.00 5.01
4121 4811 5.100259 TCGCTCTTTCTAGTTATTTCGGTG 58.900 41.667 0.00 0.00 0.00 4.94
4122 4812 5.320549 TCGCTCTTTCTAGTTATTTCGGT 57.679 39.130 0.00 0.00 0.00 4.69
4123 4813 4.207429 GCTCGCTCTTTCTAGTTATTTCGG 59.793 45.833 0.00 0.00 0.00 4.30
4124 4814 4.798907 TGCTCGCTCTTTCTAGTTATTTCG 59.201 41.667 0.00 0.00 0.00 3.46
4125 4815 6.477033 TCATGCTCGCTCTTTCTAGTTATTTC 59.523 38.462 0.00 0.00 0.00 2.17
4126 4816 6.256757 GTCATGCTCGCTCTTTCTAGTTATTT 59.743 38.462 0.00 0.00 0.00 1.40
4127 4817 5.751028 GTCATGCTCGCTCTTTCTAGTTATT 59.249 40.000 0.00 0.00 0.00 1.40
4128 4818 5.068460 AGTCATGCTCGCTCTTTCTAGTTAT 59.932 40.000 0.00 0.00 0.00 1.89
4129 4819 4.399618 AGTCATGCTCGCTCTTTCTAGTTA 59.600 41.667 0.00 0.00 0.00 2.24
4130 4820 3.194542 AGTCATGCTCGCTCTTTCTAGTT 59.805 43.478 0.00 0.00 0.00 2.24
4131 4821 2.757868 AGTCATGCTCGCTCTTTCTAGT 59.242 45.455 0.00 0.00 0.00 2.57
4132 4822 3.371168 GAGTCATGCTCGCTCTTTCTAG 58.629 50.000 2.13 0.00 34.13 2.43
4133 4823 3.428746 GAGTCATGCTCGCTCTTTCTA 57.571 47.619 2.13 0.00 34.13 2.10
4134 4824 2.292103 GAGTCATGCTCGCTCTTTCT 57.708 50.000 2.13 0.00 34.13 2.52
4143 4833 1.587613 GGTCGCGAGAGTCATGCTC 60.588 63.158 10.24 8.56 43.49 4.26
4144 4834 2.492090 GGTCGCGAGAGTCATGCT 59.508 61.111 10.24 0.00 43.49 3.79
4145 4835 2.951745 CGGTCGCGAGAGTCATGC 60.952 66.667 10.24 0.00 43.49 4.06
4146 4836 2.951745 GCGGTCGCGAGAGTCATG 60.952 66.667 10.24 0.00 43.49 3.07
4193 4883 4.996434 CATGGAGATCCGGCCGGC 62.996 72.222 39.89 26.30 39.43 6.13
4194 4884 4.996434 GCATGGAGATCCGGCCGG 62.996 72.222 39.13 39.13 39.43 6.13
4195 4885 3.873026 GAGCATGGAGATCCGGCCG 62.873 68.421 21.04 21.04 39.02 6.13
4196 4886 2.031768 GAGCATGGAGATCCGGCC 59.968 66.667 0.00 0.00 39.02 6.13
4197 4887 2.031768 GGAGCATGGAGATCCGGC 59.968 66.667 0.00 7.12 44.00 6.13
4201 4891 2.031768 GGCCGGAGCATGGAGATC 59.968 66.667 5.05 0.00 42.56 2.75
4202 4892 2.769621 TGGCCGGAGCATGGAGAT 60.770 61.111 5.05 0.00 42.56 2.75
4203 4893 3.785859 GTGGCCGGAGCATGGAGA 61.786 66.667 5.05 0.00 42.56 3.71
4204 4894 4.864334 GGTGGCCGGAGCATGGAG 62.864 72.222 5.05 0.00 42.56 3.86
4225 4915 3.382803 ATCTGGGAGCAGCAGACGC 62.383 63.158 0.00 0.00 38.99 5.19
4226 4916 1.227205 GATCTGGGAGCAGCAGACG 60.227 63.158 0.00 0.00 0.00 4.18
4227 4917 1.145819 GGATCTGGGAGCAGCAGAC 59.854 63.158 0.00 0.00 0.00 3.51
4228 4918 2.429767 CGGATCTGGGAGCAGCAGA 61.430 63.158 0.00 0.00 0.00 4.26
4229 4919 2.108566 CGGATCTGGGAGCAGCAG 59.891 66.667 0.00 0.00 0.00 4.24
4230 4920 3.473647 CCGGATCTGGGAGCAGCA 61.474 66.667 13.34 0.00 0.00 4.41
4231 4921 4.925861 GCCGGATCTGGGAGCAGC 62.926 72.222 22.38 2.51 0.00 5.25
4232 4922 4.247380 GGCCGGATCTGGGAGCAG 62.247 72.222 22.38 0.00 0.00 4.24
4233 4923 4.804420 AGGCCGGATCTGGGAGCA 62.804 66.667 22.38 0.00 0.00 4.26
4234 4924 3.934962 GAGGCCGGATCTGGGAGC 61.935 72.222 22.38 7.69 0.00 4.70
4235 4925 3.610669 CGAGGCCGGATCTGGGAG 61.611 72.222 22.38 0.00 0.00 4.30
4236 4926 4.458829 ACGAGGCCGGATCTGGGA 62.459 66.667 22.38 0.00 40.78 4.37
4237 4927 3.917760 GACGAGGCCGGATCTGGG 61.918 72.222 22.38 10.62 40.78 4.45
4238 4928 2.835431 AGACGAGGCCGGATCTGG 60.835 66.667 16.98 16.98 40.78 3.86
4239 4929 2.415010 CAGACGAGGCCGGATCTG 59.585 66.667 5.05 15.82 40.78 2.90
4240 4930 3.532155 GCAGACGAGGCCGGATCT 61.532 66.667 5.05 0.12 40.78 2.75
4241 4931 3.492311 GAGCAGACGAGGCCGGATC 62.492 68.421 5.05 0.14 40.78 3.36
4242 4932 3.532155 GAGCAGACGAGGCCGGAT 61.532 66.667 5.05 0.00 40.78 4.18
4264 4954 1.340405 CCCACACCTGATTCCTGGAAG 60.340 57.143 15.34 3.64 35.58 3.46
4265 4955 0.698238 CCCACACCTGATTCCTGGAA 59.302 55.000 12.26 12.26 35.58 3.53
4266 4956 0.178876 TCCCACACCTGATTCCTGGA 60.179 55.000 0.00 0.00 35.58 3.86
4267 4957 0.698238 TTCCCACACCTGATTCCTGG 59.302 55.000 0.00 0.00 37.41 4.45
4268 4958 1.352352 AGTTCCCACACCTGATTCCTG 59.648 52.381 0.00 0.00 0.00 3.86
4269 4959 1.352352 CAGTTCCCACACCTGATTCCT 59.648 52.381 0.00 0.00 0.00 3.36
4270 4960 1.073923 ACAGTTCCCACACCTGATTCC 59.926 52.381 0.00 0.00 0.00 3.01
4271 4961 2.154462 CACAGTTCCCACACCTGATTC 58.846 52.381 0.00 0.00 0.00 2.52
4272 4962 1.819305 GCACAGTTCCCACACCTGATT 60.819 52.381 0.00 0.00 0.00 2.57
4273 4963 0.250901 GCACAGTTCCCACACCTGAT 60.251 55.000 0.00 0.00 0.00 2.90
4274 4964 1.148273 GCACAGTTCCCACACCTGA 59.852 57.895 0.00 0.00 0.00 3.86
4275 4965 1.898574 GGCACAGTTCCCACACCTG 60.899 63.158 0.00 0.00 0.00 4.00
4276 4966 2.515901 GGCACAGTTCCCACACCT 59.484 61.111 0.00 0.00 0.00 4.00
4277 4967 2.597510 GGGCACAGTTCCCACACC 60.598 66.667 2.84 0.00 43.37 4.16
4278 4968 2.597510 GGGGCACAGTTCCCACAC 60.598 66.667 10.83 0.00 45.73 3.82
4279 4969 4.263572 CGGGGCACAGTTCCCACA 62.264 66.667 10.83 0.00 45.73 4.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.