Multiple sequence alignment - TraesCS2B01G435300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G435300 chr2B 100.000 4389 0 0 1 4389 625541054 625545442 0.000000e+00 8106.0
1 TraesCS2B01G435300 chr2B 80.804 224 32 8 74 289 150203115 150202895 9.770000e-37 165.0
2 TraesCS2B01G435300 chr2B 78.077 260 39 11 45 289 762443681 762443937 9.830000e-32 148.0
3 TraesCS2B01G435300 chr2D 90.398 2364 109 32 2099 4389 527905583 527907901 0.000000e+00 3000.0
4 TraesCS2B01G435300 chr2D 92.909 1805 99 21 295 2082 527903803 527905595 0.000000e+00 2597.0
5 TraesCS2B01G435300 chr2D 88.468 633 44 8 2099 2729 567941636 567942241 0.000000e+00 737.0
6 TraesCS2B01G435300 chr2D 90.206 194 7 4 1899 2082 567941457 567941648 4.390000e-60 243.0
7 TraesCS2B01G435300 chr2A 91.718 1630 98 20 289 1905 672770183 672771788 0.000000e+00 2228.0
8 TraesCS2B01G435300 chr2A 90.112 1426 90 18 2099 3487 672772047 672773458 0.000000e+00 1805.0
9 TraesCS2B01G435300 chr2A 85.828 755 48 25 3671 4389 672773533 672774264 0.000000e+00 747.0
10 TraesCS2B01G435300 chr2A 85.619 299 25 11 1 285 181857386 181857092 9.230000e-77 298.0
11 TraesCS2B01G435300 chr2A 94.444 180 7 2 1904 2082 672771882 672772059 1.560000e-69 274.0
12 TraesCS2B01G435300 chr6B 93.372 1041 49 6 867 1907 70511700 70512720 0.000000e+00 1522.0
13 TraesCS2B01G435300 chr6B 86.164 318 36 6 1200 1513 506271041 506270728 1.960000e-88 337.0
14 TraesCS2B01G435300 chr5D 88.748 631 42 8 2099 2727 263474045 263474648 0.000000e+00 745.0
15 TraesCS2B01G435300 chr5D 89.744 195 7 5 1899 2082 263473866 263474058 2.040000e-58 237.0
16 TraesCS2B01G435300 chr6D 88.346 635 45 8 2100 2732 427840007 427839400 0.000000e+00 736.0
17 TraesCS2B01G435300 chr6D 87.994 633 47 8 2099 2729 10212419 10211814 0.000000e+00 721.0
18 TraesCS2B01G435300 chr6D 80.994 342 48 11 1173 1513 294414693 294414368 5.630000e-64 255.0
19 TraesCS2B01G435300 chr6D 90.206 194 7 4 1899 2082 10212598 10212407 4.390000e-60 243.0
20 TraesCS2B01G435300 chr6D 89.691 194 8 4 1899 2082 427840187 427839996 2.040000e-58 237.0
21 TraesCS2B01G435300 chr7D 88.310 633 45 8 2099 2729 114196951 114197556 0.000000e+00 732.0
22 TraesCS2B01G435300 chr7D 89.175 194 9 4 1899 2082 114196772 114196963 9.490000e-57 231.0
23 TraesCS2B01G435300 chr7D 80.444 225 38 5 70 289 630538625 630538848 2.720000e-37 167.0
24 TraesCS2B01G435300 chr7D 80.822 219 36 5 76 289 630544360 630544577 2.720000e-37 167.0
25 TraesCS2B01G435300 chr7A 94.667 225 10 1 2211 2433 190648265 190648489 9.030000e-92 348.0
26 TraesCS2B01G435300 chr7A 93.778 225 12 1 2211 2433 595540028 595539804 1.960000e-88 337.0
27 TraesCS2B01G435300 chr3A 83.000 300 37 9 1 289 102837973 102837677 4.350000e-65 259.0
28 TraesCS2B01G435300 chr4D 90.206 194 7 4 1899 2082 505744179 505743988 4.390000e-60 243.0
29 TraesCS2B01G435300 chr4D 80.695 259 33 10 45 291 173576967 173576714 7.500000e-43 185.0
30 TraesCS2B01G435300 chr4D 93.023 43 3 0 4152 4194 353546228 353546270 3.660000e-06 63.9
31 TraesCS2B01G435300 chr4A 90.206 194 7 4 1899 2082 309736801 309736992 4.390000e-60 243.0
32 TraesCS2B01G435300 chr4A 78.988 257 40 9 46 291 534518630 534518377 3.510000e-36 163.0
33 TraesCS2B01G435300 chr7B 81.938 227 31 8 74 293 96806336 96806113 2.700000e-42 183.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G435300 chr2B 625541054 625545442 4388 False 8106.0 8106 100.0000 1 4389 1 chr2B.!!$F1 4388
1 TraesCS2B01G435300 chr2D 527903803 527907901 4098 False 2798.5 3000 91.6535 295 4389 2 chr2D.!!$F1 4094
2 TraesCS2B01G435300 chr2D 567941457 567942241 784 False 490.0 737 89.3370 1899 2729 2 chr2D.!!$F2 830
3 TraesCS2B01G435300 chr2A 672770183 672774264 4081 False 1263.5 2228 90.5255 289 4389 4 chr2A.!!$F1 4100
4 TraesCS2B01G435300 chr6B 70511700 70512720 1020 False 1522.0 1522 93.3720 867 1907 1 chr6B.!!$F1 1040
5 TraesCS2B01G435300 chr5D 263473866 263474648 782 False 491.0 745 89.2460 1899 2727 2 chr5D.!!$F1 828
6 TraesCS2B01G435300 chr6D 427839400 427840187 787 True 486.5 736 89.0185 1899 2732 2 chr6D.!!$R3 833
7 TraesCS2B01G435300 chr6D 10211814 10212598 784 True 482.0 721 89.1000 1899 2729 2 chr6D.!!$R2 830
8 TraesCS2B01G435300 chr7D 114196772 114197556 784 False 481.5 732 88.7425 1899 2729 2 chr7D.!!$F3 830

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
65 66 0.108138 AGGTTCAGATGGTGTAGCGC 60.108 55.0 0.0 0.00 0.00 5.92 F
84 85 0.109342 CTCAGCAAGAGGTGGGTGTT 59.891 55.0 0.0 0.00 43.32 3.32 F
85 86 0.179020 TCAGCAAGAGGTGGGTGTTG 60.179 55.0 0.0 0.00 43.32 3.33 F
89 90 0.250901 CAAGAGGTGGGTGTTGGGAG 60.251 60.0 0.0 0.00 0.00 4.30 F
472 477 0.387202 CATGACCCTACTCTGGCTCG 59.613 60.0 0.0 0.00 0.00 5.03 F
2087 2246 0.322456 TCAATGTTTCTGGGCCCTCG 60.322 55.0 25.7 14.59 0.00 4.63 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1793 1844 0.455633 GCAAGGCTGTTGCTCAATCG 60.456 55.000 14.71 0.00 41.87 3.34 R
2074 2233 0.757188 TTTTTGCGAGGGCCCAGAAA 60.757 50.000 27.56 16.05 38.85 2.52 R
2075 2234 1.152652 TTTTTGCGAGGGCCCAGAA 60.153 52.632 27.56 9.65 38.85 3.02 R
2076 2235 2.518426 TTTTTGCGAGGGCCCAGA 59.482 55.556 27.56 0.26 38.85 3.86 R
2092 2251 3.662759 TCCCCAGAAACACTGTCTTTT 57.337 42.857 0.00 0.00 44.40 2.27 R
3702 3934 1.077357 TGCAAACAACCACCTCCGT 60.077 52.632 0.00 0.00 0.00 4.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.713902 GCATAGTCCCAGGGTGATG 57.286 57.895 5.01 8.83 0.00 3.07
19 20 0.839946 GCATAGTCCCAGGGTGATGT 59.160 55.000 5.01 0.00 0.00 3.06
20 21 1.202698 GCATAGTCCCAGGGTGATGTC 60.203 57.143 5.01 1.49 0.00 3.06
21 22 1.417890 CATAGTCCCAGGGTGATGTCC 59.582 57.143 5.01 0.00 0.00 4.02
22 23 0.415830 TAGTCCCAGGGTGATGTCCA 59.584 55.000 5.01 0.00 0.00 4.02
23 24 0.475632 AGTCCCAGGGTGATGTCCAA 60.476 55.000 5.01 0.00 0.00 3.53
24 25 0.322546 GTCCCAGGGTGATGTCCAAC 60.323 60.000 5.01 0.00 0.00 3.77
25 26 0.770166 TCCCAGGGTGATGTCCAACA 60.770 55.000 5.01 0.00 32.95 3.33
26 27 0.332632 CCCAGGGTGATGTCCAACAT 59.667 55.000 0.00 0.00 42.43 2.71
27 28 1.466856 CCAGGGTGATGTCCAACATG 58.533 55.000 0.00 0.00 43.40 3.21
28 29 0.813184 CAGGGTGATGTCCAACATGC 59.187 55.000 0.00 0.00 39.27 4.06
29 30 0.323725 AGGGTGATGTCCAACATGCC 60.324 55.000 0.00 0.32 39.27 4.40
30 31 0.611618 GGGTGATGTCCAACATGCCA 60.612 55.000 0.00 0.00 39.27 4.92
31 32 1.477553 GGTGATGTCCAACATGCCAT 58.522 50.000 0.00 0.00 39.27 4.40
32 33 1.135527 GGTGATGTCCAACATGCCATG 59.864 52.381 2.40 2.40 39.27 3.66
34 35 3.016031 GTGATGTCCAACATGCCATGTA 58.984 45.455 11.38 0.00 44.07 2.29
35 36 3.065786 GTGATGTCCAACATGCCATGTAG 59.934 47.826 11.38 6.11 44.07 2.74
36 37 2.127271 TGTCCAACATGCCATGTAGG 57.873 50.000 11.38 6.59 44.07 3.18
37 38 1.632920 TGTCCAACATGCCATGTAGGA 59.367 47.619 11.38 3.32 44.07 2.94
38 39 2.241941 TGTCCAACATGCCATGTAGGAT 59.758 45.455 11.38 0.00 44.07 3.24
39 40 2.880890 GTCCAACATGCCATGTAGGATC 59.119 50.000 11.38 0.00 44.07 3.36
40 41 1.875514 CCAACATGCCATGTAGGATCG 59.124 52.381 11.38 0.00 44.07 3.69
41 42 1.875514 CAACATGCCATGTAGGATCGG 59.124 52.381 11.38 0.00 44.07 4.18
42 43 1.423584 ACATGCCATGTAGGATCGGA 58.576 50.000 8.96 0.00 42.78 4.55
43 44 1.980765 ACATGCCATGTAGGATCGGAT 59.019 47.619 8.96 0.00 42.78 4.18
44 45 2.289882 ACATGCCATGTAGGATCGGATG 60.290 50.000 8.96 0.00 42.78 3.51
45 46 1.423584 TGCCATGTAGGATCGGATGT 58.576 50.000 0.00 0.00 41.22 3.06
46 47 2.604139 TGCCATGTAGGATCGGATGTA 58.396 47.619 0.00 0.00 41.22 2.29
47 48 2.562738 TGCCATGTAGGATCGGATGTAG 59.437 50.000 0.00 0.00 41.22 2.74
48 49 2.093973 GCCATGTAGGATCGGATGTAGG 60.094 54.545 0.00 0.00 41.22 3.18
49 50 3.165875 CCATGTAGGATCGGATGTAGGT 58.834 50.000 0.00 0.00 41.22 3.08
50 51 3.578716 CCATGTAGGATCGGATGTAGGTT 59.421 47.826 0.00 0.00 41.22 3.50
51 52 4.322049 CCATGTAGGATCGGATGTAGGTTC 60.322 50.000 0.00 0.00 41.22 3.62
52 53 3.905968 TGTAGGATCGGATGTAGGTTCA 58.094 45.455 0.00 0.00 0.00 3.18
53 54 3.889538 TGTAGGATCGGATGTAGGTTCAG 59.110 47.826 0.00 0.00 0.00 3.02
54 55 3.314307 AGGATCGGATGTAGGTTCAGA 57.686 47.619 0.00 0.00 0.00 3.27
55 56 3.850752 AGGATCGGATGTAGGTTCAGAT 58.149 45.455 0.00 0.00 31.89 2.90
56 57 3.576118 AGGATCGGATGTAGGTTCAGATG 59.424 47.826 0.00 0.00 29.81 2.90
57 58 3.306364 GGATCGGATGTAGGTTCAGATGG 60.306 52.174 0.00 0.00 29.81 3.51
58 59 2.747177 TCGGATGTAGGTTCAGATGGT 58.253 47.619 0.00 0.00 0.00 3.55
59 60 2.430694 TCGGATGTAGGTTCAGATGGTG 59.569 50.000 0.00 0.00 0.00 4.17
60 61 2.168521 CGGATGTAGGTTCAGATGGTGT 59.831 50.000 0.00 0.00 0.00 4.16
61 62 3.383505 CGGATGTAGGTTCAGATGGTGTA 59.616 47.826 0.00 0.00 0.00 2.90
62 63 4.499865 CGGATGTAGGTTCAGATGGTGTAG 60.500 50.000 0.00 0.00 0.00 2.74
63 64 3.887621 TGTAGGTTCAGATGGTGTAGC 57.112 47.619 0.00 0.00 0.00 3.58
64 65 2.165641 TGTAGGTTCAGATGGTGTAGCG 59.834 50.000 0.00 0.00 0.00 4.26
65 66 0.108138 AGGTTCAGATGGTGTAGCGC 60.108 55.000 0.00 0.00 0.00 5.92
66 67 0.108138 GGTTCAGATGGTGTAGCGCT 60.108 55.000 17.26 17.26 0.00 5.92
67 68 1.281899 GTTCAGATGGTGTAGCGCTC 58.718 55.000 16.34 6.54 0.00 5.03
68 69 0.894835 TTCAGATGGTGTAGCGCTCA 59.105 50.000 16.34 9.61 0.00 4.26
69 70 0.457443 TCAGATGGTGTAGCGCTCAG 59.543 55.000 16.34 0.00 0.00 3.35
80 81 2.435586 CGCTCAGCAAGAGGTGGG 60.436 66.667 0.00 0.00 46.47 4.61
81 82 2.753029 GCTCAGCAAGAGGTGGGT 59.247 61.111 8.09 0.00 45.49 4.51
82 83 1.673665 GCTCAGCAAGAGGTGGGTG 60.674 63.158 8.09 0.00 45.49 4.61
83 84 1.757306 CTCAGCAAGAGGTGGGTGT 59.243 57.895 0.00 0.00 43.32 4.16
84 85 0.109342 CTCAGCAAGAGGTGGGTGTT 59.891 55.000 0.00 0.00 43.32 3.32
85 86 0.179020 TCAGCAAGAGGTGGGTGTTG 60.179 55.000 0.00 0.00 43.32 3.33
86 87 1.151450 AGCAAGAGGTGGGTGTTGG 59.849 57.895 0.00 0.00 0.00 3.77
87 88 1.903404 GCAAGAGGTGGGTGTTGGG 60.903 63.158 0.00 0.00 0.00 4.12
88 89 1.843421 CAAGAGGTGGGTGTTGGGA 59.157 57.895 0.00 0.00 0.00 4.37
89 90 0.250901 CAAGAGGTGGGTGTTGGGAG 60.251 60.000 0.00 0.00 0.00 4.30
90 91 0.401395 AAGAGGTGGGTGTTGGGAGA 60.401 55.000 0.00 0.00 0.00 3.71
91 92 0.838122 AGAGGTGGGTGTTGGGAGAG 60.838 60.000 0.00 0.00 0.00 3.20
92 93 0.836400 GAGGTGGGTGTTGGGAGAGA 60.836 60.000 0.00 0.00 0.00 3.10
93 94 0.401395 AGGTGGGTGTTGGGAGAGAA 60.401 55.000 0.00 0.00 0.00 2.87
94 95 0.476771 GGTGGGTGTTGGGAGAGAAA 59.523 55.000 0.00 0.00 0.00 2.52
95 96 1.133606 GGTGGGTGTTGGGAGAGAAAA 60.134 52.381 0.00 0.00 0.00 2.29
96 97 2.661718 GTGGGTGTTGGGAGAGAAAAA 58.338 47.619 0.00 0.00 0.00 1.94
118 119 8.866970 AAAAATATGGTCCAATGCAAAAAGAT 57.133 26.923 0.00 0.00 0.00 2.40
119 120 7.852971 AAATATGGTCCAATGCAAAAAGATG 57.147 32.000 0.00 0.00 0.00 2.90
120 121 6.795144 ATATGGTCCAATGCAAAAAGATGA 57.205 33.333 0.00 0.00 0.00 2.92
121 122 4.952071 TGGTCCAATGCAAAAAGATGAA 57.048 36.364 0.00 0.00 0.00 2.57
122 123 5.287674 TGGTCCAATGCAAAAAGATGAAA 57.712 34.783 0.00 0.00 0.00 2.69
123 124 5.678583 TGGTCCAATGCAAAAAGATGAAAA 58.321 33.333 0.00 0.00 0.00 2.29
124 125 5.759273 TGGTCCAATGCAAAAAGATGAAAAG 59.241 36.000 0.00 0.00 0.00 2.27
125 126 5.759763 GGTCCAATGCAAAAAGATGAAAAGT 59.240 36.000 0.00 0.00 0.00 2.66
126 127 6.928492 GGTCCAATGCAAAAAGATGAAAAGTA 59.072 34.615 0.00 0.00 0.00 2.24
127 128 7.116805 GGTCCAATGCAAAAAGATGAAAAGTAG 59.883 37.037 0.00 0.00 0.00 2.57
128 129 7.116805 GTCCAATGCAAAAAGATGAAAAGTAGG 59.883 37.037 0.00 0.00 0.00 3.18
129 130 7.015098 TCCAATGCAAAAAGATGAAAAGTAGGA 59.985 33.333 0.00 0.00 0.00 2.94
130 131 7.330208 CCAATGCAAAAAGATGAAAAGTAGGAG 59.670 37.037 0.00 0.00 0.00 3.69
131 132 6.959639 TGCAAAAAGATGAAAAGTAGGAGT 57.040 33.333 0.00 0.00 0.00 3.85
132 133 6.738114 TGCAAAAAGATGAAAAGTAGGAGTG 58.262 36.000 0.00 0.00 0.00 3.51
133 134 6.152379 GCAAAAAGATGAAAAGTAGGAGTGG 58.848 40.000 0.00 0.00 0.00 4.00
134 135 6.016276 GCAAAAAGATGAAAAGTAGGAGTGGA 60.016 38.462 0.00 0.00 0.00 4.02
135 136 7.470009 GCAAAAAGATGAAAAGTAGGAGTGGAA 60.470 37.037 0.00 0.00 0.00 3.53
136 137 8.413229 CAAAAAGATGAAAAGTAGGAGTGGAAA 58.587 33.333 0.00 0.00 0.00 3.13
137 138 8.533569 AAAAGATGAAAAGTAGGAGTGGAAAA 57.466 30.769 0.00 0.00 0.00 2.29
138 139 8.712228 AAAGATGAAAAGTAGGAGTGGAAAAT 57.288 30.769 0.00 0.00 0.00 1.82
139 140 9.807921 AAAGATGAAAAGTAGGAGTGGAAAATA 57.192 29.630 0.00 0.00 0.00 1.40
140 141 9.454859 AAGATGAAAAGTAGGAGTGGAAAATAG 57.545 33.333 0.00 0.00 0.00 1.73
141 142 8.826765 AGATGAAAAGTAGGAGTGGAAAATAGA 58.173 33.333 0.00 0.00 0.00 1.98
142 143 9.103861 GATGAAAAGTAGGAGTGGAAAATAGAG 57.896 37.037 0.00 0.00 0.00 2.43
143 144 8.202461 TGAAAAGTAGGAGTGGAAAATAGAGA 57.798 34.615 0.00 0.00 0.00 3.10
144 145 8.826765 TGAAAAGTAGGAGTGGAAAATAGAGAT 58.173 33.333 0.00 0.00 0.00 2.75
145 146 9.103861 GAAAAGTAGGAGTGGAAAATAGAGATG 57.896 37.037 0.00 0.00 0.00 2.90
146 147 6.168270 AGTAGGAGTGGAAAATAGAGATGC 57.832 41.667 0.00 0.00 0.00 3.91
147 148 5.663106 AGTAGGAGTGGAAAATAGAGATGCA 59.337 40.000 0.00 0.00 0.00 3.96
148 149 5.643421 AGGAGTGGAAAATAGAGATGCAT 57.357 39.130 0.00 0.00 0.00 3.96
149 150 5.374921 AGGAGTGGAAAATAGAGATGCATG 58.625 41.667 2.46 0.00 0.00 4.06
150 151 5.104193 AGGAGTGGAAAATAGAGATGCATGT 60.104 40.000 2.46 0.00 0.00 3.21
151 152 5.008415 GGAGTGGAAAATAGAGATGCATGTG 59.992 44.000 2.46 0.00 0.00 3.21
152 153 5.503927 AGTGGAAAATAGAGATGCATGTGT 58.496 37.500 2.46 0.00 0.00 3.72
153 154 6.653020 AGTGGAAAATAGAGATGCATGTGTA 58.347 36.000 2.46 2.80 0.00 2.90
154 155 6.540189 AGTGGAAAATAGAGATGCATGTGTAC 59.460 38.462 2.46 0.00 0.00 2.90
155 156 5.822519 TGGAAAATAGAGATGCATGTGTACC 59.177 40.000 2.46 0.98 0.00 3.34
156 157 5.050091 GGAAAATAGAGATGCATGTGTACCG 60.050 44.000 2.46 0.00 0.00 4.02
157 158 3.667497 ATAGAGATGCATGTGTACCGG 57.333 47.619 2.46 0.00 0.00 5.28
158 159 1.485124 AGAGATGCATGTGTACCGGA 58.515 50.000 9.46 0.00 0.00 5.14
159 160 1.410517 AGAGATGCATGTGTACCGGAG 59.589 52.381 9.46 0.00 0.00 4.63
160 161 1.137086 GAGATGCATGTGTACCGGAGT 59.863 52.381 9.46 0.00 0.00 3.85
161 162 1.137086 AGATGCATGTGTACCGGAGTC 59.863 52.381 9.46 0.00 0.00 3.36
162 163 1.137086 GATGCATGTGTACCGGAGTCT 59.863 52.381 9.46 0.00 0.00 3.24
163 164 0.530744 TGCATGTGTACCGGAGTCTC 59.469 55.000 9.46 0.00 0.00 3.36
164 165 0.818296 GCATGTGTACCGGAGTCTCT 59.182 55.000 9.46 0.00 0.00 3.10
165 166 2.022195 GCATGTGTACCGGAGTCTCTA 58.978 52.381 9.46 0.00 0.00 2.43
166 167 2.623889 GCATGTGTACCGGAGTCTCTAT 59.376 50.000 9.46 0.00 0.00 1.98
167 168 3.068307 GCATGTGTACCGGAGTCTCTATT 59.932 47.826 9.46 0.00 0.00 1.73
168 169 4.441634 GCATGTGTACCGGAGTCTCTATTT 60.442 45.833 9.46 0.00 0.00 1.40
169 170 5.661458 CATGTGTACCGGAGTCTCTATTTT 58.339 41.667 9.46 0.00 0.00 1.82
170 171 5.733620 TGTGTACCGGAGTCTCTATTTTT 57.266 39.130 9.46 0.00 0.00 1.94
193 194 4.689612 TTCCTTGATGATACCCACTAGC 57.310 45.455 0.00 0.00 0.00 3.42
194 195 2.628178 TCCTTGATGATACCCACTAGCG 59.372 50.000 0.00 0.00 0.00 4.26
195 196 2.289072 CCTTGATGATACCCACTAGCGG 60.289 54.545 0.00 0.00 0.00 5.52
196 197 2.082140 TGATGATACCCACTAGCGGT 57.918 50.000 7.24 7.24 37.40 5.68
197 198 2.394632 TGATGATACCCACTAGCGGTT 58.605 47.619 7.37 0.00 34.66 4.44
198 199 2.769663 TGATGATACCCACTAGCGGTTT 59.230 45.455 7.37 0.29 34.66 3.27
199 200 2.684001 TGATACCCACTAGCGGTTTG 57.316 50.000 7.37 0.00 34.66 2.93
200 201 1.296727 GATACCCACTAGCGGTTTGC 58.703 55.000 7.37 0.00 46.98 3.68
210 211 2.616969 GCGGTTTGCACTGAAGAGA 58.383 52.632 0.00 0.00 45.45 3.10
211 212 0.944386 GCGGTTTGCACTGAAGAGAA 59.056 50.000 0.00 0.00 45.45 2.87
212 213 1.333619 GCGGTTTGCACTGAAGAGAAA 59.666 47.619 0.00 0.00 45.45 2.52
213 214 2.223479 GCGGTTTGCACTGAAGAGAAAA 60.223 45.455 0.00 0.00 45.45 2.29
214 215 3.733684 GCGGTTTGCACTGAAGAGAAAAA 60.734 43.478 0.00 0.00 45.45 1.94
235 236 7.671495 AAAAATCAATGTAAATGCCTCAACC 57.329 32.000 0.00 0.00 0.00 3.77
236 237 6.610075 AAATCAATGTAAATGCCTCAACCT 57.390 33.333 0.00 0.00 0.00 3.50
237 238 7.716799 AAATCAATGTAAATGCCTCAACCTA 57.283 32.000 0.00 0.00 0.00 3.08
238 239 6.699575 ATCAATGTAAATGCCTCAACCTAC 57.300 37.500 0.00 0.00 0.00 3.18
239 240 5.815581 TCAATGTAAATGCCTCAACCTACT 58.184 37.500 0.00 0.00 0.00 2.57
240 241 6.245408 TCAATGTAAATGCCTCAACCTACTT 58.755 36.000 0.00 0.00 0.00 2.24
241 242 6.719370 TCAATGTAAATGCCTCAACCTACTTT 59.281 34.615 0.00 0.00 0.00 2.66
242 243 7.232534 TCAATGTAAATGCCTCAACCTACTTTT 59.767 33.333 0.00 0.00 0.00 2.27
243 244 6.969993 TGTAAATGCCTCAACCTACTTTTT 57.030 33.333 0.00 0.00 0.00 1.94
271 272 4.910195 TGGAACATCTGTATCCATATGCC 58.090 43.478 0.00 0.00 38.30 4.40
272 273 4.350520 TGGAACATCTGTATCCATATGCCA 59.649 41.667 0.00 0.00 38.30 4.92
273 274 4.697352 GGAACATCTGTATCCATATGCCAC 59.303 45.833 0.00 0.00 30.42 5.01
274 275 4.292186 ACATCTGTATCCATATGCCACC 57.708 45.455 0.00 0.00 30.42 4.61
275 276 3.652387 ACATCTGTATCCATATGCCACCA 59.348 43.478 0.00 0.00 30.42 4.17
276 277 4.290459 ACATCTGTATCCATATGCCACCAT 59.710 41.667 0.00 0.00 30.42 3.55
277 278 4.999469 TCTGTATCCATATGCCACCATT 57.001 40.909 0.00 0.00 32.85 3.16
278 279 4.654915 TCTGTATCCATATGCCACCATTG 58.345 43.478 0.00 0.00 32.85 2.82
279 280 4.104579 TCTGTATCCATATGCCACCATTGT 59.895 41.667 0.00 0.00 32.85 2.71
280 281 5.309282 TCTGTATCCATATGCCACCATTGTA 59.691 40.000 0.00 0.00 32.85 2.41
281 282 5.312895 TGTATCCATATGCCACCATTGTAC 58.687 41.667 0.00 0.00 32.85 2.90
282 283 3.941704 TCCATATGCCACCATTGTACA 57.058 42.857 0.00 0.00 32.85 2.90
283 284 4.451891 TCCATATGCCACCATTGTACAT 57.548 40.909 0.00 0.00 32.85 2.29
284 285 4.143543 TCCATATGCCACCATTGTACATG 58.856 43.478 0.00 0.00 32.85 3.21
285 286 3.890756 CCATATGCCACCATTGTACATGT 59.109 43.478 2.69 2.69 32.85 3.21
286 287 4.022935 CCATATGCCACCATTGTACATGTC 60.023 45.833 0.00 0.00 32.85 3.06
287 288 1.832883 TGCCACCATTGTACATGTCC 58.167 50.000 0.00 0.00 0.00 4.02
288 289 1.354031 TGCCACCATTGTACATGTCCT 59.646 47.619 0.00 0.00 0.00 3.85
289 290 2.573915 TGCCACCATTGTACATGTCCTA 59.426 45.455 0.00 0.00 0.00 2.94
290 291 3.009584 TGCCACCATTGTACATGTCCTAA 59.990 43.478 0.00 0.00 0.00 2.69
291 292 4.013728 GCCACCATTGTACATGTCCTAAA 58.986 43.478 0.00 0.00 0.00 1.85
292 293 4.461081 GCCACCATTGTACATGTCCTAAAA 59.539 41.667 0.00 0.00 0.00 1.52
293 294 5.127031 GCCACCATTGTACATGTCCTAAAAT 59.873 40.000 0.00 0.00 0.00 1.82
299 300 9.139174 CCATTGTACATGTCCTAAAATGTTTTC 57.861 33.333 0.00 0.00 38.05 2.29
306 307 4.276431 TGTCCTAAAATGTTTTCCGACACC 59.724 41.667 12.53 0.00 35.33 4.16
318 320 0.969894 CCGACACCCTCTCAGACTTT 59.030 55.000 0.00 0.00 0.00 2.66
413 418 2.504585 ACATGCCATCACTCATGAGACT 59.495 45.455 29.27 9.89 41.82 3.24
414 419 2.975732 TGCCATCACTCATGAGACTC 57.024 50.000 29.27 11.40 38.57 3.36
417 422 1.415659 CCATCACTCATGAGACTCCCC 59.584 57.143 29.27 0.00 38.57 4.81
419 424 2.151502 TCACTCATGAGACTCCCCTC 57.848 55.000 29.27 0.00 0.00 4.30
423 428 2.309613 CTCATGAGACTCCCCTCAGAG 58.690 57.143 18.34 0.00 45.27 3.35
457 462 0.471191 CCTGGCTAGCCATCACATGA 59.529 55.000 35.93 11.50 46.15 3.07
472 477 0.387202 CATGACCCTACTCTGGCTCG 59.613 60.000 0.00 0.00 0.00 5.03
474 479 2.042843 ACCCTACTCTGGCTCGGG 60.043 66.667 0.00 0.00 40.79 5.14
496 507 5.269505 GCATAGGGTCTATAGTGCCATAG 57.730 47.826 14.71 9.04 0.00 2.23
497 508 4.712337 GCATAGGGTCTATAGTGCCATAGT 59.288 45.833 14.71 4.11 31.57 2.12
498 509 5.394663 GCATAGGGTCTATAGTGCCATAGTG 60.395 48.000 14.71 12.59 31.57 2.74
499 510 2.900546 AGGGTCTATAGTGCCATAGTGC 59.099 50.000 14.71 0.00 31.57 4.40
500 511 2.028020 GGGTCTATAGTGCCATAGTGCC 60.028 54.545 14.71 0.00 31.57 5.01
501 512 2.632996 GGTCTATAGTGCCATAGTGCCA 59.367 50.000 0.00 0.00 31.57 4.92
543 554 1.068832 TACTCGATGACGCACGCAAC 61.069 55.000 0.00 0.00 39.58 4.17
578 589 2.420687 GCCTCACAGATTTAGGGTCCTG 60.421 54.545 0.00 0.00 0.00 3.86
633 647 3.016031 TGCCATCATGAACGCACTTATT 58.984 40.909 14.26 0.00 0.00 1.40
669 683 2.452600 AACCCAAAGTCCAAGCAAGA 57.547 45.000 0.00 0.00 0.00 3.02
677 691 5.291858 CCAAAGTCCAAGCAAGAAAAAGAAC 59.708 40.000 0.00 0.00 0.00 3.01
820 859 4.748144 CCCCCAACAGGCCAGAGC 62.748 72.222 5.01 0.00 38.76 4.09
965 1007 1.288932 CCAGAATTCCTCCCCCATTGT 59.711 52.381 0.65 0.00 0.00 2.71
1063 1105 1.256284 CGTCATAGTCGCGCTCTTCG 61.256 60.000 5.56 2.63 42.12 3.79
1617 1668 4.836125 ATCATGCCAAATAATCCGTCAC 57.164 40.909 0.00 0.00 0.00 3.67
1621 1672 4.630894 TGCCAAATAATCCGTCACAATC 57.369 40.909 0.00 0.00 0.00 2.67
1635 1686 4.211164 CGTCACAATCAGCTGAAACTGTAA 59.789 41.667 22.50 8.07 38.84 2.41
1695 1746 1.014564 GCTTCGTCTCTGGTTTCCCG 61.015 60.000 0.00 0.00 0.00 5.14
1730 1781 6.985117 TGAAAATCCTCTCTGTTTGATTTGG 58.015 36.000 0.00 0.00 37.46 3.28
1793 1844 4.342772 CGTACTTCCAATAATGCTGCAAC 58.657 43.478 6.36 0.00 0.00 4.17
1968 2118 1.896220 CTGGGACACTTTGCTTAGCA 58.104 50.000 1.39 1.39 36.47 3.49
1969 2119 2.440409 CTGGGACACTTTGCTTAGCAT 58.560 47.619 8.05 0.00 38.76 3.79
2030 2187 1.352352 ACCTGTAGCAGCCTCATTTGT 59.648 47.619 0.00 0.00 0.00 2.83
2069 2228 8.201554 TCTGTGTTGCTCAGTTATATCAAATC 57.798 34.615 0.00 0.00 34.86 2.17
2070 2229 7.823799 TCTGTGTTGCTCAGTTATATCAAATCA 59.176 33.333 0.00 0.00 34.86 2.57
2071 2230 8.334263 TGTGTTGCTCAGTTATATCAAATCAA 57.666 30.769 0.00 0.00 0.00 2.57
2072 2231 8.959548 TGTGTTGCTCAGTTATATCAAATCAAT 58.040 29.630 0.00 0.00 0.00 2.57
2073 2232 9.229784 GTGTTGCTCAGTTATATCAAATCAATG 57.770 33.333 0.00 0.00 0.00 2.82
2074 2233 8.959548 TGTTGCTCAGTTATATCAAATCAATGT 58.040 29.630 0.00 0.00 0.00 2.71
2075 2234 9.793252 GTTGCTCAGTTATATCAAATCAATGTT 57.207 29.630 0.00 0.00 0.00 2.71
2081 2240 9.740239 CAGTTATATCAAATCAATGTTTCTGGG 57.260 33.333 0.00 0.00 0.00 4.45
2082 2241 8.416329 AGTTATATCAAATCAATGTTTCTGGGC 58.584 33.333 0.00 0.00 0.00 5.36
2083 2242 3.959535 TCAAATCAATGTTTCTGGGCC 57.040 42.857 0.00 0.00 0.00 5.80
2084 2243 2.566724 TCAAATCAATGTTTCTGGGCCC 59.433 45.455 17.59 17.59 0.00 5.80
2085 2244 2.568509 CAAATCAATGTTTCTGGGCCCT 59.431 45.455 25.70 0.00 0.00 5.19
2086 2245 2.149973 ATCAATGTTTCTGGGCCCTC 57.850 50.000 25.70 8.82 0.00 4.30
2087 2246 0.322456 TCAATGTTTCTGGGCCCTCG 60.322 55.000 25.70 14.59 0.00 4.63
2088 2247 1.678970 AATGTTTCTGGGCCCTCGC 60.679 57.895 25.70 9.32 0.00 5.03
2089 2248 2.424842 AATGTTTCTGGGCCCTCGCA 62.425 55.000 25.70 14.85 36.38 5.10
2090 2249 2.282180 GTTTCTGGGCCCTCGCAA 60.282 61.111 25.70 8.03 36.38 4.85
2091 2250 1.901464 GTTTCTGGGCCCTCGCAAA 60.901 57.895 25.70 13.19 36.38 3.68
2092 2251 1.152652 TTTCTGGGCCCTCGCAAAA 60.153 52.632 25.70 12.82 36.38 2.44
2093 2252 0.757188 TTTCTGGGCCCTCGCAAAAA 60.757 50.000 25.70 11.06 36.38 1.94
2141 2300 8.961092 CATTCATTTCCAAGCATATTTTACGAG 58.039 33.333 0.00 0.00 0.00 4.18
2189 2380 9.778741 ATGATTTCTTCCCTAAAAAGGAAAAAC 57.221 29.630 0.00 0.00 42.75 2.43
2190 2381 8.208224 TGATTTCTTCCCTAAAAAGGAAAAACC 58.792 33.333 0.00 0.00 42.75 3.27
2191 2382 6.488769 TTCTTCCCTAAAAAGGAAAAACCC 57.511 37.500 0.00 0.00 42.75 4.11
2192 2383 5.784023 TCTTCCCTAAAAAGGAAAAACCCT 58.216 37.500 0.00 0.00 42.75 4.34
2201 2392 3.993658 AGGAAAAACCCTTTCTTCCCT 57.006 42.857 0.00 0.00 40.05 4.20
2202 2393 5.412617 AAGGAAAAACCCTTTCTTCCCTA 57.587 39.130 0.00 0.00 43.68 3.53
2203 2394 5.412617 AGGAAAAACCCTTTCTTCCCTAA 57.587 39.130 0.00 0.00 40.05 2.69
2204 2395 5.977533 AGGAAAAACCCTTTCTTCCCTAAT 58.022 37.500 0.00 0.00 40.05 1.73
2205 2396 6.390504 AGGAAAAACCCTTTCTTCCCTAATT 58.609 36.000 0.00 0.00 40.05 1.40
2206 2397 6.849697 AGGAAAAACCCTTTCTTCCCTAATTT 59.150 34.615 0.00 0.00 40.05 1.82
2207 2398 7.349859 AGGAAAAACCCTTTCTTCCCTAATTTT 59.650 33.333 0.00 0.00 40.05 1.82
2208 2399 7.996644 GGAAAAACCCTTTCTTCCCTAATTTTT 59.003 33.333 0.00 0.00 31.37 1.94
2244 2437 7.990917 TGAAGTGTTTGCAACTACTTTTATGA 58.009 30.769 21.71 7.65 34.89 2.15
2311 2504 5.371526 TCTTTCAGCTCTCATTTTCAGTGT 58.628 37.500 0.00 0.00 0.00 3.55
2315 2508 6.590234 TCAGCTCTCATTTTCAGTGTAGTA 57.410 37.500 0.00 0.00 0.00 1.82
2387 2580 8.509690 TCAATTGATCACATTGAGAAAGACTTC 58.490 33.333 20.17 0.00 31.50 3.01
2465 2658 9.959749 TTTGTTGTCAATAACTTTTGAGGTATC 57.040 29.630 0.00 0.00 36.34 2.24
2467 2660 8.783093 TGTTGTCAATAACTTTTGAGGTATCTG 58.217 33.333 0.00 0.00 36.34 2.90
2469 2662 8.918202 TGTCAATAACTTTTGAGGTATCTGTT 57.082 30.769 0.00 0.00 36.34 3.16
2470 2663 9.349713 TGTCAATAACTTTTGAGGTATCTGTTT 57.650 29.630 0.00 0.00 36.34 2.83
2491 2684 5.799827 TTTTTATCCTTGTGAGGGTTTGG 57.200 39.130 0.00 0.00 43.72 3.28
2526 2719 5.540337 TCCAAATGGTCCTCTATGCTACTAG 59.460 44.000 0.00 0.00 36.34 2.57
2660 2853 1.301874 TGTCGGCCTTTACGTTGGG 60.302 57.895 0.00 0.00 0.00 4.12
2706 2900 3.485463 TTTTCCCACTACTGGTGTCAG 57.515 47.619 0.00 0.00 43.94 3.51
2801 3010 6.038271 GCACTATCTGACATTTCCCGTTTAAT 59.962 38.462 0.00 0.00 0.00 1.40
3150 3359 0.975040 ATGCTCGCTCAGAAGGAGGT 60.975 55.000 0.00 0.00 44.22 3.85
3153 3362 0.967887 CTCGCTCAGAAGGAGGTGGA 60.968 60.000 0.00 0.00 44.22 4.02
3154 3363 0.324738 TCGCTCAGAAGGAGGTGGAT 60.325 55.000 0.00 0.00 44.22 3.41
3155 3364 0.179089 CGCTCAGAAGGAGGTGGATG 60.179 60.000 0.00 0.00 44.22 3.51
3156 3365 0.179936 GCTCAGAAGGAGGTGGATGG 59.820 60.000 0.00 0.00 44.22 3.51
3158 3367 0.252881 TCAGAAGGAGGTGGATGGCT 60.253 55.000 0.00 0.00 0.00 4.75
3159 3368 0.179936 CAGAAGGAGGTGGATGGCTC 59.820 60.000 0.00 0.00 0.00 4.70
3160 3369 1.144936 GAAGGAGGTGGATGGCTCG 59.855 63.158 0.00 0.00 0.00 5.03
3169 3381 3.654020 GATGGCTCGCCGAATGCC 61.654 66.667 10.19 10.19 46.26 4.40
3187 3399 2.741985 CGCGACATCCACTTGCCA 60.742 61.111 0.00 0.00 0.00 4.92
3193 3405 1.302285 CATCCACTTGCCAGCCTCT 59.698 57.895 0.00 0.00 0.00 3.69
3199 3411 1.682854 CACTTGCCAGCCTCTTTCAAA 59.317 47.619 0.00 0.00 0.00 2.69
3268 3480 0.322975 TCCAGCAGAGCAAGAACTCC 59.677 55.000 0.00 0.00 37.39 3.85
3394 3606 3.639094 AGGAGATATCAAGGTGACCGAAG 59.361 47.826 5.32 0.00 0.00 3.79
3519 3737 4.960469 TCATAGAGGGTTTGTACTACCAGG 59.040 45.833 16.31 0.00 37.40 4.45
3520 3738 2.547990 AGAGGGTTTGTACTACCAGGG 58.452 52.381 16.31 0.00 37.40 4.45
3521 3739 2.113052 AGAGGGTTTGTACTACCAGGGA 59.887 50.000 16.31 0.00 37.40 4.20
3522 3740 2.235650 GAGGGTTTGTACTACCAGGGAC 59.764 54.545 16.31 2.82 37.40 4.46
3523 3741 2.158050 AGGGTTTGTACTACCAGGGACT 60.158 50.000 16.31 4.61 43.88 3.85
3566 3784 1.854227 GGTCTGTATAGCTTCCGTGC 58.146 55.000 0.00 0.00 0.00 5.34
3646 3864 8.500238 TCTGTAGACCTCACCTGAATTATACTA 58.500 37.037 0.00 0.00 0.00 1.82
3648 3866 9.078990 TGTAGACCTCACCTGAATTATACTATG 57.921 37.037 0.00 0.00 0.00 2.23
3651 3869 9.656323 AGACCTCACCTGAATTATACTATGTAA 57.344 33.333 0.00 0.00 0.00 2.41
3652 3870 9.694137 GACCTCACCTGAATTATACTATGTAAC 57.306 37.037 0.00 0.00 0.00 2.50
3653 3871 8.648693 ACCTCACCTGAATTATACTATGTAACC 58.351 37.037 0.00 0.00 0.00 2.85
3654 3872 7.813148 CCTCACCTGAATTATACTATGTAACCG 59.187 40.741 0.00 0.00 0.00 4.44
3655 3873 7.149973 TCACCTGAATTATACTATGTAACCGC 58.850 38.462 0.00 0.00 0.00 5.68
3656 3874 7.014905 TCACCTGAATTATACTATGTAACCGCT 59.985 37.037 0.00 0.00 0.00 5.52
3657 3875 7.656137 CACCTGAATTATACTATGTAACCGCTT 59.344 37.037 0.00 0.00 0.00 4.68
3658 3876 8.863086 ACCTGAATTATACTATGTAACCGCTTA 58.137 33.333 0.00 0.00 0.00 3.09
3659 3877 9.355215 CCTGAATTATACTATGTAACCGCTTAG 57.645 37.037 0.00 0.00 0.00 2.18
3660 3878 9.909644 CTGAATTATACTATGTAACCGCTTAGT 57.090 33.333 0.00 0.00 34.86 2.24
3667 3885 5.890419 ACTATGTAACCGCTTAGTAGAAGGT 59.110 40.000 0.00 0.00 36.08 3.50
3698 3930 9.217278 CTATGTATGGATCCTTCATCTTTTGAG 57.783 37.037 14.23 4.73 35.27 3.02
3702 3934 6.065976 TGGATCCTTCATCTTTTGAGCTTA 57.934 37.500 14.23 0.00 35.27 3.09
3749 3985 1.843851 TCACAAGGTCACTTTCCTGGT 59.156 47.619 0.00 0.00 39.58 4.00
3772 4008 6.016276 GGTTGTTGTTTGATATGTGACTCCTT 60.016 38.462 0.00 0.00 0.00 3.36
3773 4009 6.801539 TGTTGTTTGATATGTGACTCCTTC 57.198 37.500 0.00 0.00 0.00 3.46
3774 4010 5.705441 TGTTGTTTGATATGTGACTCCTTCC 59.295 40.000 0.00 0.00 0.00 3.46
3792 4028 1.133199 TCCTTGTTCCAAATGGGCACT 60.133 47.619 0.00 0.00 36.21 4.40
3799 4035 2.886913 TCCAAATGGGCACTGATCAAA 58.113 42.857 0.00 0.00 36.21 2.69
3884 4134 1.472552 GCCTCAAACGTTGGCCTTTTT 60.473 47.619 15.40 0.00 40.71 1.94
3974 4249 2.902705 TCAGTGCTAAAACGTCTGGT 57.097 45.000 0.00 0.00 0.00 4.00
3999 4274 2.863132 TTACCATTTACACCGGCACT 57.137 45.000 0.00 0.00 0.00 4.40
4001 4276 1.241315 ACCATTTACACCGGCACTGC 61.241 55.000 0.00 0.00 0.00 4.40
4030 4305 4.993029 AGAACAGTATGACTCACTAGGC 57.007 45.455 0.00 0.00 39.69 3.93
4042 4317 1.202710 TCACTAGGCCTGAAAACGCAA 60.203 47.619 17.99 0.00 0.00 4.85
4046 4321 2.153366 AGGCCTGAAAACGCAATTTG 57.847 45.000 3.11 0.00 0.00 2.32
4048 4323 1.540146 GGCCTGAAAACGCAATTTGGT 60.540 47.619 0.00 0.00 0.00 3.67
4054 4329 6.146347 GCCTGAAAACGCAATTTGGTAATTTA 59.854 34.615 0.00 0.00 31.63 1.40
4067 4346 5.599999 TGGTAATTTAGAGAGGAGAGTGC 57.400 43.478 0.00 0.00 0.00 4.40
4071 4350 1.545841 TTAGAGAGGAGAGTGCGCAA 58.454 50.000 14.00 0.00 0.00 4.85
4083 4362 5.030874 AGAGTGCGCAATAACAGTAAAAC 57.969 39.130 14.00 0.00 0.00 2.43
4084 4363 4.083484 AGAGTGCGCAATAACAGTAAAACC 60.083 41.667 14.00 0.00 0.00 3.27
4085 4364 3.818773 AGTGCGCAATAACAGTAAAACCT 59.181 39.130 14.00 0.00 0.00 3.50
4086 4365 4.998672 AGTGCGCAATAACAGTAAAACCTA 59.001 37.500 14.00 0.00 0.00 3.08
4087 4366 5.121768 AGTGCGCAATAACAGTAAAACCTAG 59.878 40.000 14.00 0.00 0.00 3.02
4090 4369 5.350640 GCGCAATAACAGTAAAACCTAGAGT 59.649 40.000 0.30 0.00 0.00 3.24
4202 4482 0.463474 GCCACAGAAGAGATCAGGCC 60.463 60.000 0.00 0.00 37.00 5.19
4203 4483 0.907486 CCACAGAAGAGATCAGGCCA 59.093 55.000 5.01 0.00 0.00 5.36
4204 4484 1.134461 CCACAGAAGAGATCAGGCCAG 60.134 57.143 5.01 0.00 0.00 4.85
4264 4546 0.247185 AAAATGCCACCTTGCGATGG 59.753 50.000 0.00 0.00 39.16 3.51
4275 4557 1.079612 TGCGATGGCAGTGTCAGAG 60.080 57.895 2.79 0.33 46.21 3.35
4335 4622 1.078759 CGATCTTGACTCCGCCACAC 61.079 60.000 0.00 0.00 0.00 3.82
4347 4634 1.647084 GCCACACCGTTCACAGAAC 59.353 57.895 0.00 0.00 0.00 3.01
4379 4666 0.106719 ATTTACCGGGGGCACATGAG 60.107 55.000 6.32 0.00 0.00 2.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.839946 ACATCACCCTGGGACTATGC 59.160 55.000 22.23 0.00 0.00 3.14
1 2 1.417890 GGACATCACCCTGGGACTATG 59.582 57.143 22.23 19.86 0.00 2.23
3 4 0.415830 TGGACATCACCCTGGGACTA 59.584 55.000 22.23 4.16 0.00 2.59
5 6 0.322546 GTTGGACATCACCCTGGGAC 60.323 60.000 22.23 0.00 0.00 4.46
6 7 0.770166 TGTTGGACATCACCCTGGGA 60.770 55.000 22.23 0.00 0.00 4.37
7 8 0.332632 ATGTTGGACATCACCCTGGG 59.667 55.000 12.28 12.28 32.38 4.45
8 9 1.466856 CATGTTGGACATCACCCTGG 58.533 55.000 0.00 0.00 36.53 4.45
9 10 0.813184 GCATGTTGGACATCACCCTG 59.187 55.000 0.00 0.00 36.53 4.45
10 11 0.323725 GGCATGTTGGACATCACCCT 60.324 55.000 0.00 0.00 36.53 4.34
11 12 0.611618 TGGCATGTTGGACATCACCC 60.612 55.000 0.00 2.70 36.53 4.61
12 13 1.135527 CATGGCATGTTGGACATCACC 59.864 52.381 19.32 3.73 36.53 4.02
13 14 1.820519 ACATGGCATGTTGGACATCAC 59.179 47.619 26.78 0.00 41.63 3.06
14 15 2.219080 ACATGGCATGTTGGACATCA 57.781 45.000 26.78 0.00 41.63 3.07
15 16 3.976793 CTACATGGCATGTTGGACATC 57.023 47.619 35.36 0.00 41.63 3.06
21 22 1.875514 CCGATCCTACATGGCATGTTG 59.124 52.381 35.36 31.22 41.63 3.33
22 23 1.768275 TCCGATCCTACATGGCATGTT 59.232 47.619 35.36 19.55 41.63 2.71
23 24 1.423584 TCCGATCCTACATGGCATGT 58.576 50.000 33.18 33.18 46.92 3.21
24 25 2.289882 ACATCCGATCCTACATGGCATG 60.290 50.000 25.31 25.31 35.26 4.06
25 26 1.980765 ACATCCGATCCTACATGGCAT 59.019 47.619 0.00 0.00 35.26 4.40
26 27 1.423584 ACATCCGATCCTACATGGCA 58.576 50.000 0.00 0.00 35.26 4.92
27 28 2.093973 CCTACATCCGATCCTACATGGC 60.094 54.545 0.00 0.00 35.26 4.40
28 29 3.165875 ACCTACATCCGATCCTACATGG 58.834 50.000 0.00 0.00 37.10 3.66
29 30 4.280929 TGAACCTACATCCGATCCTACATG 59.719 45.833 0.00 0.00 0.00 3.21
30 31 4.480115 TGAACCTACATCCGATCCTACAT 58.520 43.478 0.00 0.00 0.00 2.29
31 32 3.889538 CTGAACCTACATCCGATCCTACA 59.110 47.826 0.00 0.00 0.00 2.74
32 33 4.142790 TCTGAACCTACATCCGATCCTAC 58.857 47.826 0.00 0.00 0.00 3.18
33 34 4.448720 TCTGAACCTACATCCGATCCTA 57.551 45.455 0.00 0.00 0.00 2.94
34 35 3.314307 TCTGAACCTACATCCGATCCT 57.686 47.619 0.00 0.00 0.00 3.24
35 36 3.306364 CCATCTGAACCTACATCCGATCC 60.306 52.174 0.00 0.00 0.00 3.36
36 37 3.322254 ACCATCTGAACCTACATCCGATC 59.678 47.826 0.00 0.00 0.00 3.69
37 38 3.070159 CACCATCTGAACCTACATCCGAT 59.930 47.826 0.00 0.00 0.00 4.18
38 39 2.430694 CACCATCTGAACCTACATCCGA 59.569 50.000 0.00 0.00 0.00 4.55
39 40 2.168521 ACACCATCTGAACCTACATCCG 59.831 50.000 0.00 0.00 0.00 4.18
40 41 3.914426 ACACCATCTGAACCTACATCC 57.086 47.619 0.00 0.00 0.00 3.51
41 42 4.372656 GCTACACCATCTGAACCTACATC 58.627 47.826 0.00 0.00 0.00 3.06
42 43 3.181475 CGCTACACCATCTGAACCTACAT 60.181 47.826 0.00 0.00 0.00 2.29
43 44 2.165641 CGCTACACCATCTGAACCTACA 59.834 50.000 0.00 0.00 0.00 2.74
44 45 2.810650 CGCTACACCATCTGAACCTAC 58.189 52.381 0.00 0.00 0.00 3.18
45 46 1.136305 GCGCTACACCATCTGAACCTA 59.864 52.381 0.00 0.00 0.00 3.08
46 47 0.108138 GCGCTACACCATCTGAACCT 60.108 55.000 0.00 0.00 0.00 3.50
47 48 0.108138 AGCGCTACACCATCTGAACC 60.108 55.000 8.99 0.00 0.00 3.62
48 49 1.281899 GAGCGCTACACCATCTGAAC 58.718 55.000 11.50 0.00 0.00 3.18
49 50 0.894835 TGAGCGCTACACCATCTGAA 59.105 50.000 11.50 0.00 0.00 3.02
50 51 0.457443 CTGAGCGCTACACCATCTGA 59.543 55.000 11.50 0.00 0.00 3.27
51 52 1.150567 GCTGAGCGCTACACCATCTG 61.151 60.000 11.50 0.97 35.14 2.90
52 53 1.142748 GCTGAGCGCTACACCATCT 59.857 57.895 11.50 0.00 35.14 2.90
53 54 0.740868 TTGCTGAGCGCTACACCATC 60.741 55.000 11.50 0.00 40.11 3.51
54 55 0.742281 CTTGCTGAGCGCTACACCAT 60.742 55.000 11.50 0.00 40.11 3.55
55 56 1.374631 CTTGCTGAGCGCTACACCA 60.375 57.895 11.50 2.38 40.11 4.17
56 57 1.079819 TCTTGCTGAGCGCTACACC 60.080 57.895 11.50 0.00 40.11 4.16
57 58 1.080995 CCTCTTGCTGAGCGCTACAC 61.081 60.000 11.50 2.37 41.35 2.90
58 59 1.216444 CCTCTTGCTGAGCGCTACA 59.784 57.895 11.50 9.77 41.35 2.74
59 60 1.080995 CACCTCTTGCTGAGCGCTAC 61.081 60.000 11.50 3.26 41.35 3.58
60 61 1.216444 CACCTCTTGCTGAGCGCTA 59.784 57.895 11.50 0.00 41.35 4.26
61 62 2.047465 CACCTCTTGCTGAGCGCT 60.047 61.111 11.27 11.27 41.35 5.92
62 63 3.123620 CCACCTCTTGCTGAGCGC 61.124 66.667 0.00 0.00 41.35 5.92
63 64 2.435586 CCCACCTCTTGCTGAGCG 60.436 66.667 0.00 0.00 41.35 5.03
64 65 1.673665 CACCCACCTCTTGCTGAGC 60.674 63.158 0.00 0.00 41.35 4.26
65 66 0.109342 AACACCCACCTCTTGCTGAG 59.891 55.000 1.17 1.17 42.30 3.35
66 67 0.179020 CAACACCCACCTCTTGCTGA 60.179 55.000 0.00 0.00 0.00 4.26
67 68 1.174712 CCAACACCCACCTCTTGCTG 61.175 60.000 0.00 0.00 0.00 4.41
68 69 1.151450 CCAACACCCACCTCTTGCT 59.849 57.895 0.00 0.00 0.00 3.91
69 70 1.903404 CCCAACACCCACCTCTTGC 60.903 63.158 0.00 0.00 0.00 4.01
70 71 0.250901 CTCCCAACACCCACCTCTTG 60.251 60.000 0.00 0.00 0.00 3.02
71 72 0.401395 TCTCCCAACACCCACCTCTT 60.401 55.000 0.00 0.00 0.00 2.85
72 73 0.838122 CTCTCCCAACACCCACCTCT 60.838 60.000 0.00 0.00 0.00 3.69
73 74 0.836400 TCTCTCCCAACACCCACCTC 60.836 60.000 0.00 0.00 0.00 3.85
74 75 0.401395 TTCTCTCCCAACACCCACCT 60.401 55.000 0.00 0.00 0.00 4.00
75 76 0.476771 TTTCTCTCCCAACACCCACC 59.523 55.000 0.00 0.00 0.00 4.61
76 77 2.358322 TTTTCTCTCCCAACACCCAC 57.642 50.000 0.00 0.00 0.00 4.61
93 94 8.732531 CATCTTTTTGCATTGGACCATATTTTT 58.267 29.630 0.00 0.00 0.00 1.94
94 95 8.102047 TCATCTTTTTGCATTGGACCATATTTT 58.898 29.630 0.00 0.00 0.00 1.82
95 96 7.622713 TCATCTTTTTGCATTGGACCATATTT 58.377 30.769 0.00 0.00 0.00 1.40
96 97 7.185318 TCATCTTTTTGCATTGGACCATATT 57.815 32.000 0.00 0.00 0.00 1.28
97 98 6.795144 TCATCTTTTTGCATTGGACCATAT 57.205 33.333 0.00 0.00 0.00 1.78
98 99 6.602410 TTCATCTTTTTGCATTGGACCATA 57.398 33.333 0.00 0.00 0.00 2.74
99 100 5.486735 TTCATCTTTTTGCATTGGACCAT 57.513 34.783 0.00 0.00 0.00 3.55
100 101 4.952071 TTCATCTTTTTGCATTGGACCA 57.048 36.364 0.00 0.00 0.00 4.02
101 102 5.759763 ACTTTTCATCTTTTTGCATTGGACC 59.240 36.000 0.00 0.00 0.00 4.46
102 103 6.849588 ACTTTTCATCTTTTTGCATTGGAC 57.150 33.333 0.00 0.00 0.00 4.02
103 104 7.015098 TCCTACTTTTCATCTTTTTGCATTGGA 59.985 33.333 0.00 0.00 0.00 3.53
104 105 7.153985 TCCTACTTTTCATCTTTTTGCATTGG 58.846 34.615 0.00 0.00 0.00 3.16
105 106 7.869429 ACTCCTACTTTTCATCTTTTTGCATTG 59.131 33.333 0.00 0.00 0.00 2.82
106 107 7.869429 CACTCCTACTTTTCATCTTTTTGCATT 59.131 33.333 0.00 0.00 0.00 3.56
107 108 7.373493 CACTCCTACTTTTCATCTTTTTGCAT 58.627 34.615 0.00 0.00 0.00 3.96
108 109 6.239008 CCACTCCTACTTTTCATCTTTTTGCA 60.239 38.462 0.00 0.00 0.00 4.08
109 110 6.016276 TCCACTCCTACTTTTCATCTTTTTGC 60.016 38.462 0.00 0.00 0.00 3.68
110 111 7.510549 TCCACTCCTACTTTTCATCTTTTTG 57.489 36.000 0.00 0.00 0.00 2.44
111 112 8.533569 TTTCCACTCCTACTTTTCATCTTTTT 57.466 30.769 0.00 0.00 0.00 1.94
112 113 8.533569 TTTTCCACTCCTACTTTTCATCTTTT 57.466 30.769 0.00 0.00 0.00 2.27
113 114 8.712228 ATTTTCCACTCCTACTTTTCATCTTT 57.288 30.769 0.00 0.00 0.00 2.52
114 115 9.454859 CTATTTTCCACTCCTACTTTTCATCTT 57.545 33.333 0.00 0.00 0.00 2.40
115 116 8.826765 TCTATTTTCCACTCCTACTTTTCATCT 58.173 33.333 0.00 0.00 0.00 2.90
116 117 9.103861 CTCTATTTTCCACTCCTACTTTTCATC 57.896 37.037 0.00 0.00 0.00 2.92
117 118 8.826765 TCTCTATTTTCCACTCCTACTTTTCAT 58.173 33.333 0.00 0.00 0.00 2.57
118 119 8.202461 TCTCTATTTTCCACTCCTACTTTTCA 57.798 34.615 0.00 0.00 0.00 2.69
119 120 9.103861 CATCTCTATTTTCCACTCCTACTTTTC 57.896 37.037 0.00 0.00 0.00 2.29
120 121 7.554476 GCATCTCTATTTTCCACTCCTACTTTT 59.446 37.037 0.00 0.00 0.00 2.27
121 122 7.051000 GCATCTCTATTTTCCACTCCTACTTT 58.949 38.462 0.00 0.00 0.00 2.66
122 123 6.156949 TGCATCTCTATTTTCCACTCCTACTT 59.843 38.462 0.00 0.00 0.00 2.24
123 124 5.663106 TGCATCTCTATTTTCCACTCCTACT 59.337 40.000 0.00 0.00 0.00 2.57
124 125 5.918608 TGCATCTCTATTTTCCACTCCTAC 58.081 41.667 0.00 0.00 0.00 3.18
125 126 6.100279 ACATGCATCTCTATTTTCCACTCCTA 59.900 38.462 0.00 0.00 0.00 2.94
126 127 5.104193 ACATGCATCTCTATTTTCCACTCCT 60.104 40.000 0.00 0.00 0.00 3.69
127 128 5.008415 CACATGCATCTCTATTTTCCACTCC 59.992 44.000 0.00 0.00 0.00 3.85
128 129 5.587844 ACACATGCATCTCTATTTTCCACTC 59.412 40.000 0.00 0.00 0.00 3.51
129 130 5.503927 ACACATGCATCTCTATTTTCCACT 58.496 37.500 0.00 0.00 0.00 4.00
130 131 5.824904 ACACATGCATCTCTATTTTCCAC 57.175 39.130 0.00 0.00 0.00 4.02
131 132 5.822519 GGTACACATGCATCTCTATTTTCCA 59.177 40.000 0.00 0.00 0.00 3.53
132 133 5.050091 CGGTACACATGCATCTCTATTTTCC 60.050 44.000 0.00 0.00 0.00 3.13
133 134 5.050091 CCGGTACACATGCATCTCTATTTTC 60.050 44.000 0.00 0.00 0.00 2.29
134 135 4.816385 CCGGTACACATGCATCTCTATTTT 59.184 41.667 0.00 0.00 0.00 1.82
135 136 4.100963 TCCGGTACACATGCATCTCTATTT 59.899 41.667 0.00 0.00 0.00 1.40
136 137 3.641436 TCCGGTACACATGCATCTCTATT 59.359 43.478 0.00 0.00 0.00 1.73
137 138 3.230976 TCCGGTACACATGCATCTCTAT 58.769 45.455 0.00 0.00 0.00 1.98
138 139 2.623416 CTCCGGTACACATGCATCTCTA 59.377 50.000 0.00 0.00 0.00 2.43
139 140 1.410517 CTCCGGTACACATGCATCTCT 59.589 52.381 0.00 0.00 0.00 3.10
140 141 1.137086 ACTCCGGTACACATGCATCTC 59.863 52.381 0.00 0.00 0.00 2.75
141 142 1.137086 GACTCCGGTACACATGCATCT 59.863 52.381 0.00 0.00 0.00 2.90
142 143 1.137086 AGACTCCGGTACACATGCATC 59.863 52.381 0.00 0.00 0.00 3.91
143 144 1.137086 GAGACTCCGGTACACATGCAT 59.863 52.381 0.00 0.00 0.00 3.96
144 145 0.530744 GAGACTCCGGTACACATGCA 59.469 55.000 0.00 0.00 0.00 3.96
145 146 0.818296 AGAGACTCCGGTACACATGC 59.182 55.000 0.00 0.00 0.00 4.06
146 147 4.920640 AATAGAGACTCCGGTACACATG 57.079 45.455 0.00 0.00 0.00 3.21
147 148 5.934402 AAAATAGAGACTCCGGTACACAT 57.066 39.130 0.00 0.00 0.00 3.21
148 149 5.733620 AAAAATAGAGACTCCGGTACACA 57.266 39.130 0.00 0.00 0.00 3.72
169 170 5.885912 GCTAGTGGGTATCATCAAGGAAAAA 59.114 40.000 0.00 0.00 0.00 1.94
170 171 5.437060 GCTAGTGGGTATCATCAAGGAAAA 58.563 41.667 0.00 0.00 0.00 2.29
171 172 4.442893 CGCTAGTGGGTATCATCAAGGAAA 60.443 45.833 0.00 0.00 0.00 3.13
172 173 3.069586 CGCTAGTGGGTATCATCAAGGAA 59.930 47.826 0.00 0.00 0.00 3.36
173 174 2.628178 CGCTAGTGGGTATCATCAAGGA 59.372 50.000 0.00 0.00 0.00 3.36
174 175 2.289072 CCGCTAGTGGGTATCATCAAGG 60.289 54.545 15.00 0.00 0.00 3.61
175 176 2.365617 ACCGCTAGTGGGTATCATCAAG 59.634 50.000 25.80 0.00 35.58 3.02
176 177 2.394632 ACCGCTAGTGGGTATCATCAA 58.605 47.619 25.80 0.00 35.58 2.57
177 178 2.082140 ACCGCTAGTGGGTATCATCA 57.918 50.000 25.80 0.00 35.58 3.07
178 179 3.131396 CAAACCGCTAGTGGGTATCATC 58.869 50.000 25.80 0.00 36.57 2.92
179 180 2.745152 GCAAACCGCTAGTGGGTATCAT 60.745 50.000 25.80 1.43 36.57 2.45
180 181 1.406341 GCAAACCGCTAGTGGGTATCA 60.406 52.381 25.80 0.00 36.57 2.15
181 182 1.296727 GCAAACCGCTAGTGGGTATC 58.703 55.000 25.80 11.23 36.57 2.24
182 183 0.616371 TGCAAACCGCTAGTGGGTAT 59.384 50.000 25.80 9.31 43.06 2.73
183 184 0.320946 GTGCAAACCGCTAGTGGGTA 60.321 55.000 25.80 1.84 43.06 3.69
184 185 1.599797 GTGCAAACCGCTAGTGGGT 60.600 57.895 25.80 18.00 43.06 4.51
185 186 1.302511 AGTGCAAACCGCTAGTGGG 60.303 57.895 25.80 13.29 43.06 4.61
186 187 0.602638 TCAGTGCAAACCGCTAGTGG 60.603 55.000 21.04 21.04 43.06 4.00
187 188 1.195448 CTTCAGTGCAAACCGCTAGTG 59.805 52.381 0.00 0.00 43.06 2.74
188 189 1.070134 TCTTCAGTGCAAACCGCTAGT 59.930 47.619 0.00 0.00 43.06 2.57
189 190 1.728971 CTCTTCAGTGCAAACCGCTAG 59.271 52.381 0.00 0.00 43.06 3.42
190 191 1.343142 TCTCTTCAGTGCAAACCGCTA 59.657 47.619 0.00 0.00 43.06 4.26
191 192 0.106708 TCTCTTCAGTGCAAACCGCT 59.893 50.000 0.00 0.00 43.06 5.52
192 193 0.944386 TTCTCTTCAGTGCAAACCGC 59.056 50.000 0.00 0.00 42.89 5.68
193 194 3.691049 TTTTCTCTTCAGTGCAAACCG 57.309 42.857 0.00 0.00 0.00 4.44
211 212 7.452562 AGGTTGAGGCATTTACATTGATTTTT 58.547 30.769 0.00 0.00 0.00 1.94
212 213 7.008021 AGGTTGAGGCATTTACATTGATTTT 57.992 32.000 0.00 0.00 0.00 1.82
213 214 6.610075 AGGTTGAGGCATTTACATTGATTT 57.390 33.333 0.00 0.00 0.00 2.17
214 215 6.891908 AGTAGGTTGAGGCATTTACATTGATT 59.108 34.615 0.00 0.00 0.00 2.57
215 216 6.426587 AGTAGGTTGAGGCATTTACATTGAT 58.573 36.000 0.00 0.00 0.00 2.57
216 217 5.815581 AGTAGGTTGAGGCATTTACATTGA 58.184 37.500 0.00 0.00 0.00 2.57
217 218 6.515272 AAGTAGGTTGAGGCATTTACATTG 57.485 37.500 0.00 0.00 0.00 2.82
218 219 7.539034 AAAAGTAGGTTGAGGCATTTACATT 57.461 32.000 0.00 0.00 0.00 2.71
219 220 7.539034 AAAAAGTAGGTTGAGGCATTTACAT 57.461 32.000 0.00 0.00 0.00 2.29
220 221 6.969993 AAAAAGTAGGTTGAGGCATTTACA 57.030 33.333 0.00 0.00 0.00 2.41
259 260 5.312895 TGTACAATGGTGGCATATGGATAC 58.687 41.667 4.56 0.00 0.00 2.24
260 261 5.574970 TGTACAATGGTGGCATATGGATA 57.425 39.130 4.56 0.00 0.00 2.59
261 262 4.451891 TGTACAATGGTGGCATATGGAT 57.548 40.909 4.56 0.00 0.00 3.41
262 263 3.941704 TGTACAATGGTGGCATATGGA 57.058 42.857 4.56 0.00 0.00 3.41
263 264 3.890756 ACATGTACAATGGTGGCATATGG 59.109 43.478 0.00 0.00 0.00 2.74
264 265 4.022935 GGACATGTACAATGGTGGCATATG 60.023 45.833 2.19 0.00 0.00 1.78
265 266 4.141181 AGGACATGTACAATGGTGGCATAT 60.141 41.667 11.55 0.00 0.00 1.78
266 267 3.201930 AGGACATGTACAATGGTGGCATA 59.798 43.478 11.55 0.00 0.00 3.14
267 268 2.025037 AGGACATGTACAATGGTGGCAT 60.025 45.455 11.55 0.00 0.00 4.40
268 269 1.354031 AGGACATGTACAATGGTGGCA 59.646 47.619 11.55 0.00 0.00 4.92
269 270 2.128771 AGGACATGTACAATGGTGGC 57.871 50.000 11.55 0.00 0.00 5.01
270 271 6.152661 ACATTTTAGGACATGTACAATGGTGG 59.847 38.462 18.78 4.03 31.60 4.61
271 272 7.156876 ACATTTTAGGACATGTACAATGGTG 57.843 36.000 18.78 11.16 31.60 4.17
272 273 7.775053 AACATTTTAGGACATGTACAATGGT 57.225 32.000 18.78 12.53 33.11 3.55
273 274 9.139174 GAAAACATTTTAGGACATGTACAATGG 57.861 33.333 18.78 4.39 33.11 3.16
274 275 9.139174 GGAAAACATTTTAGGACATGTACAATG 57.861 33.333 11.55 13.62 33.11 2.82
275 276 8.026607 CGGAAAACATTTTAGGACATGTACAAT 58.973 33.333 11.55 0.00 33.11 2.71
276 277 7.228906 TCGGAAAACATTTTAGGACATGTACAA 59.771 33.333 11.55 0.00 33.11 2.41
277 278 6.711194 TCGGAAAACATTTTAGGACATGTACA 59.289 34.615 11.55 0.00 33.11 2.90
278 279 7.019418 GTCGGAAAACATTTTAGGACATGTAC 58.981 38.462 0.00 0.00 34.86 2.90
279 280 6.711194 TGTCGGAAAACATTTTAGGACATGTA 59.289 34.615 14.12 0.00 37.44 2.29
280 281 5.533154 TGTCGGAAAACATTTTAGGACATGT 59.467 36.000 0.00 0.00 37.44 3.21
281 282 5.856455 GTGTCGGAAAACATTTTAGGACATG 59.144 40.000 18.17 0.00 40.88 3.21
282 283 5.048294 GGTGTCGGAAAACATTTTAGGACAT 60.048 40.000 18.17 0.00 40.88 3.06
283 284 4.276431 GGTGTCGGAAAACATTTTAGGACA 59.724 41.667 14.12 14.12 38.74 4.02
284 285 4.320714 GGGTGTCGGAAAACATTTTAGGAC 60.321 45.833 10.71 10.71 35.10 3.85
285 286 3.822167 GGGTGTCGGAAAACATTTTAGGA 59.178 43.478 0.00 0.00 0.00 2.94
286 287 3.824443 AGGGTGTCGGAAAACATTTTAGG 59.176 43.478 0.00 0.00 0.00 2.69
287 288 4.760204 AGAGGGTGTCGGAAAACATTTTAG 59.240 41.667 0.00 0.00 0.00 1.85
288 289 4.721132 AGAGGGTGTCGGAAAACATTTTA 58.279 39.130 0.00 0.00 0.00 1.52
289 290 3.562182 AGAGGGTGTCGGAAAACATTTT 58.438 40.909 0.00 0.00 0.00 1.82
290 291 3.146847 GAGAGGGTGTCGGAAAACATTT 58.853 45.455 0.00 0.00 0.00 2.32
291 292 2.105821 TGAGAGGGTGTCGGAAAACATT 59.894 45.455 0.00 0.00 0.00 2.71
292 293 1.697432 TGAGAGGGTGTCGGAAAACAT 59.303 47.619 0.00 0.00 0.00 2.71
293 294 1.070134 CTGAGAGGGTGTCGGAAAACA 59.930 52.381 0.00 0.00 0.00 2.83
299 300 0.969894 AAAGTCTGAGAGGGTGTCGG 59.030 55.000 0.00 0.00 0.00 4.79
306 307 7.736447 ACAAGATGTTTTAAAGTCTGAGAGG 57.264 36.000 0.00 0.00 0.00 3.69
344 348 8.306761 CAGAAAGCAAATTTGTATTTACTCCCT 58.693 33.333 19.03 10.28 32.75 4.20
408 413 6.793505 TTAAAATACTCTGAGGGGAGTCTC 57.206 41.667 9.85 0.00 44.34 3.36
413 418 5.045140 CCAGGTTTAAAATACTCTGAGGGGA 60.045 44.000 9.85 0.00 0.00 4.81
414 419 5.193679 CCAGGTTTAAAATACTCTGAGGGG 58.806 45.833 9.85 0.00 0.00 4.79
417 422 5.355350 CAGGCCAGGTTTAAAATACTCTGAG 59.645 44.000 5.01 2.45 0.00 3.35
419 424 4.399303 CCAGGCCAGGTTTAAAATACTCTG 59.601 45.833 5.01 0.00 0.00 3.35
423 428 3.096852 AGCCAGGCCAGGTTTAAAATAC 58.903 45.455 16.66 0.00 0.00 1.89
457 462 2.042843 CCCGAGCCAGAGTAGGGT 60.043 66.667 0.00 0.00 43.27 4.34
472 477 1.555533 GGCACTATAGACCCTATGCCC 59.444 57.143 15.60 2.46 45.59 5.36
474 479 4.712337 ACTATGGCACTATAGACCCTATGC 59.288 45.833 6.78 4.48 35.20 3.14
494 505 1.908619 ACCTCATGTCATGTGGCACTA 59.091 47.619 26.68 5.69 45.41 2.74
495 506 0.694771 ACCTCATGTCATGTGGCACT 59.305 50.000 26.68 10.67 45.41 4.40
496 507 2.401583 TACCTCATGTCATGTGGCAC 57.598 50.000 26.68 11.55 45.41 5.01
497 508 3.054508 TGATTACCTCATGTCATGTGGCA 60.055 43.478 26.68 16.03 45.41 4.92
498 509 3.544684 TGATTACCTCATGTCATGTGGC 58.455 45.455 26.68 14.87 45.41 5.01
499 510 5.065602 CACTTGATTACCTCATGTCATGTGG 59.934 44.000 25.61 25.61 46.57 4.17
500 511 5.645067 ACACTTGATTACCTCATGTCATGTG 59.355 40.000 18.36 18.36 45.05 3.21
501 512 5.809001 ACACTTGATTACCTCATGTCATGT 58.191 37.500 12.54 0.00 39.52 3.21
543 554 2.771943 TGTGAGGCCCCTAACTTCATAG 59.228 50.000 0.00 0.00 0.00 2.23
578 589 1.750778 CCCATGAATAGTGTGGGCAAC 59.249 52.381 0.00 0.00 45.50 4.17
633 647 5.458451 TGGGTTTTATGTGGATGTGGATA 57.542 39.130 0.00 0.00 0.00 2.59
669 683 2.678336 GAGCGATGGATCCGTTCTTTTT 59.322 45.455 8.18 0.00 35.02 1.94
677 691 1.872197 GAGGGAGAGCGATGGATCCG 61.872 65.000 7.39 0.00 32.30 4.18
820 859 1.317613 CGGTGGAGATCTCTCTCTGG 58.682 60.000 21.81 4.04 46.11 3.86
1621 1672 7.809331 TCAGCAAATTTATTACAGTTTCAGCTG 59.191 33.333 7.63 7.63 43.14 4.24
1664 1715 5.508825 CCAGAGACGAAGCAGAGCTAATTAT 60.509 44.000 0.00 0.00 38.25 1.28
1695 1746 7.394641 ACAGAGAGGATTTTCAGTTAATTTCCC 59.605 37.037 0.00 0.00 0.00 3.97
1730 1781 6.644181 TGAATCAGATGAGCAGAATAATCGAC 59.356 38.462 0.00 0.00 0.00 4.20
1793 1844 0.455633 GCAAGGCTGTTGCTCAATCG 60.456 55.000 14.71 0.00 41.87 3.34
2030 2187 5.101628 GCAACACAGATCAACACTGAAAAA 58.898 37.500 0.00 0.00 38.55 1.94
2069 2228 1.937546 GCGAGGGCCCAGAAACATTG 61.938 60.000 27.56 6.14 0.00 2.82
2070 2229 1.678970 GCGAGGGCCCAGAAACATT 60.679 57.895 27.56 0.00 0.00 2.71
2071 2230 2.044946 GCGAGGGCCCAGAAACAT 60.045 61.111 27.56 0.00 0.00 2.71
2072 2231 2.632602 TTTGCGAGGGCCCAGAAACA 62.633 55.000 27.56 11.90 38.85 2.83
2073 2232 1.460273 TTTTGCGAGGGCCCAGAAAC 61.460 55.000 27.56 9.06 38.85 2.78
2074 2233 0.757188 TTTTTGCGAGGGCCCAGAAA 60.757 50.000 27.56 16.05 38.85 2.52
2075 2234 1.152652 TTTTTGCGAGGGCCCAGAA 60.153 52.632 27.56 9.65 38.85 3.02
2076 2235 2.518426 TTTTTGCGAGGGCCCAGA 59.482 55.556 27.56 0.26 38.85 3.86
2091 2250 3.976015 TCCCCAGAAACACTGTCTTTTT 58.024 40.909 0.00 0.00 44.40 1.94
2092 2251 3.662759 TCCCCAGAAACACTGTCTTTT 57.337 42.857 0.00 0.00 44.40 2.27
2093 2252 3.662759 TTCCCCAGAAACACTGTCTTT 57.337 42.857 0.00 0.00 44.40 2.52
2094 2253 3.662759 TTTCCCCAGAAACACTGTCTT 57.337 42.857 0.00 0.00 44.40 3.01
2119 2278 9.950680 ATAACTCGTAAAATATGCTTGGAAATG 57.049 29.630 0.00 0.00 0.00 2.32
2166 2353 7.349859 AGGGTTTTTCCTTTTTAGGGAAGAAAT 59.650 33.333 0.00 0.00 42.79 2.17
2182 2373 6.681729 AATTAGGGAAGAAAGGGTTTTTCC 57.318 37.500 1.16 1.16 0.00 3.13
2183 2374 8.974060 AAAAATTAGGGAAGAAAGGGTTTTTC 57.026 30.769 0.00 0.00 0.00 2.29
2244 2437 8.031277 GCTCAGAAAAATCAACCTCATAAATGT 58.969 33.333 0.00 0.00 0.00 2.71
2338 2531 8.352137 TGATGGATCAACAGATAAAACATGTT 57.648 30.769 4.92 4.92 37.64 2.71
2469 2662 5.459505 TCCAAACCCTCACAAGGATAAAAA 58.540 37.500 0.00 0.00 46.67 1.94
2470 2663 5.068215 TCCAAACCCTCACAAGGATAAAA 57.932 39.130 0.00 0.00 46.67 1.52
2471 2664 4.733077 TCCAAACCCTCACAAGGATAAA 57.267 40.909 0.00 0.00 46.67 1.40
2472 2665 4.733077 TTCCAAACCCTCACAAGGATAA 57.267 40.909 0.00 0.00 46.67 1.75
2473 2666 4.508405 CCTTTCCAAACCCTCACAAGGATA 60.508 45.833 0.00 0.00 46.67 2.59
2477 2670 2.623416 GTCCTTTCCAAACCCTCACAAG 59.377 50.000 0.00 0.00 0.00 3.16
2660 2853 1.448013 GTAAGACCGGACTGGCAGC 60.448 63.158 15.89 7.42 43.94 5.25
2706 2900 3.057734 ACTAGCAAAGTTACTGACGTGC 58.942 45.455 0.00 0.00 41.62 5.34
2801 3010 4.380843 TGATTCCCTCTGCAGGTAAAAA 57.619 40.909 15.13 3.01 38.30 1.94
2833 3042 3.805108 GCTTGCAGATTATCTCCCATCGT 60.805 47.826 0.00 0.00 0.00 3.73
2834 3043 2.740981 GCTTGCAGATTATCTCCCATCG 59.259 50.000 0.00 0.00 0.00 3.84
3016 3225 1.893786 GGTCTCGAGCATGTCCTGT 59.106 57.895 7.81 0.00 0.00 4.00
3150 3359 2.203056 CATTCGGCGAGCCATCCA 60.203 61.111 10.46 0.00 35.37 3.41
3169 3381 3.499737 GGCAAGTGGATGTCGCGG 61.500 66.667 6.13 0.00 0.00 6.46
3172 3384 2.401766 GGCTGGCAAGTGGATGTCG 61.402 63.158 0.00 0.00 0.00 4.35
3187 3399 3.308046 GGACCAGATCTTTGAAAGAGGCT 60.308 47.826 13.56 9.99 41.61 4.58
3193 3405 3.832490 TCTCGAGGACCAGATCTTTGAAA 59.168 43.478 13.56 0.00 0.00 2.69
3268 3480 1.884926 GAGCTTCGCCTCATTCCCG 60.885 63.158 0.00 0.00 0.00 5.14
3519 3737 2.593026 CCCTATCACTCTCTCCAGTCC 58.407 57.143 0.00 0.00 0.00 3.85
3520 3738 2.593026 CCCCTATCACTCTCTCCAGTC 58.407 57.143 0.00 0.00 0.00 3.51
3521 3739 1.219213 CCCCCTATCACTCTCTCCAGT 59.781 57.143 0.00 0.00 0.00 4.00
3522 3740 1.219213 ACCCCCTATCACTCTCTCCAG 59.781 57.143 0.00 0.00 0.00 3.86
3523 3741 1.319947 ACCCCCTATCACTCTCTCCA 58.680 55.000 0.00 0.00 0.00 3.86
3524 3742 2.480642 AACCCCCTATCACTCTCTCC 57.519 55.000 0.00 0.00 0.00 3.71
3525 3743 3.232662 GGTAACCCCCTATCACTCTCTC 58.767 54.545 0.00 0.00 0.00 3.20
3526 3744 2.424523 CGGTAACCCCCTATCACTCTCT 60.425 54.545 0.00 0.00 0.00 3.10
3646 3864 5.068329 GGTACCTTCTACTAAGCGGTTACAT 59.932 44.000 4.06 0.00 31.35 2.29
3648 3866 4.496507 CGGTACCTTCTACTAAGCGGTTAC 60.497 50.000 10.90 0.00 31.35 2.50
3650 3868 2.424956 CGGTACCTTCTACTAAGCGGTT 59.575 50.000 10.90 4.76 31.35 4.44
3651 3869 2.019984 CGGTACCTTCTACTAAGCGGT 58.980 52.381 10.90 0.00 32.89 5.68
3652 3870 1.268948 GCGGTACCTTCTACTAAGCGG 60.269 57.143 10.90 0.00 0.00 5.52
3653 3871 1.674962 AGCGGTACCTTCTACTAAGCG 59.325 52.381 10.90 0.00 0.00 4.68
3654 3872 4.277921 ACATAGCGGTACCTTCTACTAAGC 59.722 45.833 10.90 2.26 0.00 3.09
3655 3873 7.361885 CCATACATAGCGGTACCTTCTACTAAG 60.362 44.444 10.90 3.89 0.00 2.18
3656 3874 6.432162 CCATACATAGCGGTACCTTCTACTAA 59.568 42.308 10.90 1.46 0.00 2.24
3657 3875 5.942236 CCATACATAGCGGTACCTTCTACTA 59.058 44.000 10.90 4.35 0.00 1.82
3658 3876 4.765856 CCATACATAGCGGTACCTTCTACT 59.234 45.833 10.90 2.16 0.00 2.57
3659 3877 4.763793 TCCATACATAGCGGTACCTTCTAC 59.236 45.833 10.90 0.00 0.00 2.59
3660 3878 4.989277 TCCATACATAGCGGTACCTTCTA 58.011 43.478 10.90 11.33 0.00 2.10
3661 3879 3.840991 TCCATACATAGCGGTACCTTCT 58.159 45.455 10.90 9.41 0.00 2.85
3662 3880 4.381718 GGATCCATACATAGCGGTACCTTC 60.382 50.000 10.90 1.36 0.00 3.46
3663 3881 3.514309 GGATCCATACATAGCGGTACCTT 59.486 47.826 10.90 0.31 0.00 3.50
3665 3883 3.097614 AGGATCCATACATAGCGGTACC 58.902 50.000 15.82 0.16 0.00 3.34
3667 3885 4.412843 TGAAGGATCCATACATAGCGGTA 58.587 43.478 15.82 0.00 0.00 4.02
3698 3930 1.265905 CAAACAACCACCTCCGTAAGC 59.734 52.381 0.00 0.00 0.00 3.09
3702 3934 1.077357 TGCAAACAACCACCTCCGT 60.077 52.632 0.00 0.00 0.00 4.69
3749 3985 6.206634 GGAAGGAGTCACATATCAAACAACAA 59.793 38.462 0.00 0.00 0.00 2.83
3884 4134 2.988684 GCATGTTTGGGTCCGCCA 60.989 61.111 0.00 0.00 36.17 5.69
3979 4254 2.814919 CAGTGCCGGTGTAAATGGTAAA 59.185 45.455 1.90 0.00 0.00 2.01
3980 4255 2.428491 CAGTGCCGGTGTAAATGGTAA 58.572 47.619 1.90 0.00 0.00 2.85
3981 4256 1.946747 GCAGTGCCGGTGTAAATGGTA 60.947 52.381 2.85 0.00 0.00 3.25
3999 4274 2.036604 TCATACTGTTCTTGTGACCGCA 59.963 45.455 0.00 0.00 0.00 5.69
4001 4276 3.914312 AGTCATACTGTTCTTGTGACCG 58.086 45.455 0.00 0.00 39.89 4.79
4030 4305 6.538189 AAATTACCAAATTGCGTTTTCAGG 57.462 33.333 0.00 0.00 35.46 3.86
4042 4317 7.051000 GCACTCTCCTCTCTAAATTACCAAAT 58.949 38.462 0.00 0.00 0.00 2.32
4046 4321 4.612943 CGCACTCTCCTCTCTAAATTACC 58.387 47.826 0.00 0.00 0.00 2.85
4048 4323 3.699538 TGCGCACTCTCCTCTCTAAATTA 59.300 43.478 5.66 0.00 0.00 1.40
4054 4329 1.769026 TATTGCGCACTCTCCTCTCT 58.231 50.000 11.12 0.00 0.00 3.10
4067 4346 6.963049 ACTCTAGGTTTTACTGTTATTGCG 57.037 37.500 0.00 0.00 0.00 4.85
4083 4362 8.630037 ACAAATCAAAACTTACCAAACTCTAGG 58.370 33.333 0.00 0.00 0.00 3.02
4086 4365 9.719355 AAAACAAATCAAAACTTACCAAACTCT 57.281 25.926 0.00 0.00 0.00 3.24
4149 4429 3.244561 ACATACTGAACACTGAACCCAGG 60.245 47.826 0.00 0.00 44.60 4.45
4264 4546 1.367659 GAATCAGCCTCTGACACTGC 58.632 55.000 0.00 0.00 43.63 4.40
4275 4557 2.247437 GGATCACGCGGAATCAGCC 61.247 63.158 20.13 4.78 0.00 4.85
4335 4622 3.498397 AGTTGCTATTGTTCTGTGAACGG 59.502 43.478 6.05 0.00 0.00 4.44
4347 4634 3.315191 CCCGGTAAATCCAGTTGCTATTG 59.685 47.826 0.00 0.00 35.57 1.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.