Multiple sequence alignment - TraesCS2B01G435200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G435200 chr2B 100.000 2312 0 0 1 2312 625239923 625237612 0.000000e+00 4270
1 TraesCS2B01G435200 chr2B 94.434 1114 48 10 738 1842 627317487 627318595 0.000000e+00 1701
2 TraesCS2B01G435200 chr2B 93.886 736 39 4 732 1465 627322868 627323599 0.000000e+00 1105
3 TraesCS2B01G435200 chr2B 83.231 978 105 41 741 1684 625009297 625008345 0.000000e+00 843
4 TraesCS2B01G435200 chr2B 83.156 659 96 14 1 651 610911563 610910912 2.560000e-164 588
5 TraesCS2B01G435200 chr2B 94.709 189 7 3 1258 1444 627323681 627323868 8.080000e-75 291
6 TraesCS2B01G435200 chr2B 81.443 194 22 10 1428 1618 627324530 627324712 1.850000e-31 147
7 TraesCS2B01G435200 chr2D 90.363 965 57 21 740 1684 527804804 527803856 0.000000e+00 1234
8 TraesCS2B01G435200 chr2D 87.631 954 77 21 738 1684 528994478 528995397 0.000000e+00 1070
9 TraesCS2B01G435200 chr2D 86.040 1010 83 37 743 1729 527684526 527683552 0.000000e+00 1031
10 TraesCS2B01G435200 chr2D 91.429 595 31 13 1731 2312 527683255 527682668 0.000000e+00 798
11 TraesCS2B01G435200 chr2D 89.370 254 18 3 1722 1968 527803774 527803523 6.200000e-81 311
12 TraesCS2B01G435200 chr2A 86.053 1097 96 33 738 1810 672746508 672745445 0.000000e+00 1125
13 TraesCS2B01G435200 chr2A 89.503 905 66 15 738 1618 673417548 673418447 0.000000e+00 1118
14 TraesCS2B01G435200 chr2A 87.759 964 68 27 732 1678 673419720 673420650 0.000000e+00 1081
15 TraesCS2B01G435200 chr2A 83.463 514 41 19 1807 2312 672745420 672744943 2.730000e-119 438
16 TraesCS2B01G435200 chr7D 93.310 583 28 6 738 1312 134467307 134466728 0.000000e+00 850
17 TraesCS2B01G435200 chr7D 85.758 660 71 13 1 649 560989030 560989677 0.000000e+00 676
18 TraesCS2B01G435200 chr7A 92.034 590 35 5 732 1313 133627706 133627121 0.000000e+00 819
19 TraesCS2B01G435200 chr6B 84.650 658 81 13 2 645 708001536 708002187 2.510000e-179 638
20 TraesCS2B01G435200 chrUn 83.896 652 91 12 3 647 7161541 7162185 5.460000e-171 610
21 TraesCS2B01G435200 chr3D 84.006 644 87 15 13 649 609901824 609901190 2.540000e-169 604
22 TraesCS2B01G435200 chr1B 83.283 664 83 20 1 651 384246918 384246270 9.200000e-164 586
23 TraesCS2B01G435200 chr1B 85.035 568 73 8 1 559 669671900 669671336 3.330000e-158 568
24 TraesCS2B01G435200 chr1B 83.711 485 64 10 177 649 474266072 474265591 5.860000e-121 444
25 TraesCS2B01G435200 chr7B 82.675 658 95 17 1 651 263665684 263666329 1.200000e-157 566
26 TraesCS2B01G435200 chr3B 83.224 608 85 12 3 603 778448673 778449270 2.020000e-150 542
27 TraesCS2B01G435200 chr3B 85.468 523 62 10 1 516 397409650 397410165 1.220000e-147 532
28 TraesCS2B01G435200 chr3B 80.501 559 93 14 78 630 684392851 684392303 4.600000e-112 414


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G435200 chr2B 625237612 625239923 2311 True 4270.000000 4270 100.000000 1 2312 1 chr2B.!!$R3 2311
1 TraesCS2B01G435200 chr2B 627317487 627318595 1108 False 1701.000000 1701 94.434000 738 1842 1 chr2B.!!$F1 1104
2 TraesCS2B01G435200 chr2B 625008345 625009297 952 True 843.000000 843 83.231000 741 1684 1 chr2B.!!$R2 943
3 TraesCS2B01G435200 chr2B 610910912 610911563 651 True 588.000000 588 83.156000 1 651 1 chr2B.!!$R1 650
4 TraesCS2B01G435200 chr2B 627322868 627324712 1844 False 514.333333 1105 90.012667 732 1618 3 chr2B.!!$F2 886
5 TraesCS2B01G435200 chr2D 528994478 528995397 919 False 1070.000000 1070 87.631000 738 1684 1 chr2D.!!$F1 946
6 TraesCS2B01G435200 chr2D 527682668 527684526 1858 True 914.500000 1031 88.734500 743 2312 2 chr2D.!!$R1 1569
7 TraesCS2B01G435200 chr2D 527803523 527804804 1281 True 772.500000 1234 89.866500 740 1968 2 chr2D.!!$R2 1228
8 TraesCS2B01G435200 chr2A 673417548 673420650 3102 False 1099.500000 1118 88.631000 732 1678 2 chr2A.!!$F1 946
9 TraesCS2B01G435200 chr2A 672744943 672746508 1565 True 781.500000 1125 84.758000 738 2312 2 chr2A.!!$R1 1574
10 TraesCS2B01G435200 chr7D 134466728 134467307 579 True 850.000000 850 93.310000 738 1312 1 chr7D.!!$R1 574
11 TraesCS2B01G435200 chr7D 560989030 560989677 647 False 676.000000 676 85.758000 1 649 1 chr7D.!!$F1 648
12 TraesCS2B01G435200 chr7A 133627121 133627706 585 True 819.000000 819 92.034000 732 1313 1 chr7A.!!$R1 581
13 TraesCS2B01G435200 chr6B 708001536 708002187 651 False 638.000000 638 84.650000 2 645 1 chr6B.!!$F1 643
14 TraesCS2B01G435200 chrUn 7161541 7162185 644 False 610.000000 610 83.896000 3 647 1 chrUn.!!$F1 644
15 TraesCS2B01G435200 chr3D 609901190 609901824 634 True 604.000000 604 84.006000 13 649 1 chr3D.!!$R1 636
16 TraesCS2B01G435200 chr1B 384246270 384246918 648 True 586.000000 586 83.283000 1 651 1 chr1B.!!$R1 650
17 TraesCS2B01G435200 chr1B 669671336 669671900 564 True 568.000000 568 85.035000 1 559 1 chr1B.!!$R3 558
18 TraesCS2B01G435200 chr7B 263665684 263666329 645 False 566.000000 566 82.675000 1 651 1 chr7B.!!$F1 650
19 TraesCS2B01G435200 chr3B 778448673 778449270 597 False 542.000000 542 83.224000 3 603 1 chr3B.!!$F2 600
20 TraesCS2B01G435200 chr3B 397409650 397410165 515 False 532.000000 532 85.468000 1 516 1 chr3B.!!$F1 515
21 TraesCS2B01G435200 chr3B 684392303 684392851 548 True 414.000000 414 80.501000 78 630 1 chr3B.!!$R1 552

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
721 724 0.034896 GAACGACCTCCAAAGCTCCA 59.965 55.0 0.0 0.0 0.0 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1546 4958 0.728542 TTCAGTACAGCGACGCGATA 59.271 50.0 15.93 8.1 0.0 2.92 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
151 152 2.828549 GGGAATCACGCGGCCATT 60.829 61.111 12.47 4.97 0.00 3.16
189 192 1.539124 AGGGGAGGGAAGAAGCGTT 60.539 57.895 0.00 0.00 0.00 4.84
227 230 1.453015 GGAGAGAGGCAGAGCTCGA 60.453 63.158 8.37 0.00 36.29 4.04
245 248 4.988598 CTGCGGTCGGCTGTTGGT 62.989 66.667 0.00 0.00 44.05 3.67
249 252 4.265056 GGTCGGCTGTTGGTGGGT 62.265 66.667 0.00 0.00 0.00 4.51
250 253 2.978010 GTCGGCTGTTGGTGGGTG 60.978 66.667 0.00 0.00 0.00 4.61
251 254 3.484806 TCGGCTGTTGGTGGGTGT 61.485 61.111 0.00 0.00 0.00 4.16
252 255 3.286751 CGGCTGTTGGTGGGTGTG 61.287 66.667 0.00 0.00 0.00 3.82
253 256 2.123897 GGCTGTTGGTGGGTGTGT 60.124 61.111 0.00 0.00 0.00 3.72
254 257 2.193536 GGCTGTTGGTGGGTGTGTC 61.194 63.158 0.00 0.00 0.00 3.67
255 258 2.193536 GCTGTTGGTGGGTGTGTCC 61.194 63.158 0.00 0.00 0.00 4.02
256 259 1.225983 CTGTTGGTGGGTGTGTCCA 59.774 57.895 0.00 0.00 38.11 4.02
257 260 0.819259 CTGTTGGTGGGTGTGTCCAG 60.819 60.000 0.00 0.00 37.50 3.86
258 261 1.275421 TGTTGGTGGGTGTGTCCAGA 61.275 55.000 0.00 0.00 37.50 3.86
259 262 0.535102 GTTGGTGGGTGTGTCCAGAG 60.535 60.000 0.00 0.00 37.50 3.35
260 263 1.705002 TTGGTGGGTGTGTCCAGAGG 61.705 60.000 0.00 0.00 37.50 3.69
261 264 2.032681 GTGGGTGTGTCCAGAGGC 59.967 66.667 0.00 0.00 37.50 4.70
262 265 3.625897 TGGGTGTGTCCAGAGGCG 61.626 66.667 0.00 0.00 38.11 5.52
263 266 3.311110 GGGTGTGTCCAGAGGCGA 61.311 66.667 0.00 0.00 38.11 5.54
264 267 2.741092 GGTGTGTCCAGAGGCGAA 59.259 61.111 0.00 0.00 35.97 4.70
265 268 1.374758 GGTGTGTCCAGAGGCGAAG 60.375 63.158 0.00 0.00 35.97 3.79
266 269 1.374758 GTGTGTCCAGAGGCGAAGG 60.375 63.158 0.00 0.00 0.00 3.46
267 270 1.533033 TGTGTCCAGAGGCGAAGGA 60.533 57.895 0.00 0.00 0.00 3.36
268 271 1.118965 TGTGTCCAGAGGCGAAGGAA 61.119 55.000 0.00 0.00 32.30 3.36
269 272 0.390472 GTGTCCAGAGGCGAAGGAAG 60.390 60.000 0.00 0.00 32.30 3.46
270 273 1.448717 GTCCAGAGGCGAAGGAAGC 60.449 63.158 0.00 0.00 32.30 3.86
277 280 4.699522 GCGAAGGAAGCCACCGGT 62.700 66.667 0.00 0.00 34.73 5.28
278 281 2.032071 CGAAGGAAGCCACCGGTT 59.968 61.111 2.97 0.00 34.73 4.44
279 282 1.599797 CGAAGGAAGCCACCGGTTT 60.600 57.895 2.97 0.00 34.73 3.27
280 283 0.320946 CGAAGGAAGCCACCGGTTTA 60.321 55.000 2.97 0.00 34.73 2.01
281 284 1.677820 CGAAGGAAGCCACCGGTTTAT 60.678 52.381 2.97 0.00 34.73 1.40
282 285 2.419021 CGAAGGAAGCCACCGGTTTATA 60.419 50.000 2.97 0.00 34.73 0.98
283 286 3.743269 CGAAGGAAGCCACCGGTTTATAT 60.743 47.826 2.97 0.00 34.73 0.86
284 287 4.501915 CGAAGGAAGCCACCGGTTTATATA 60.502 45.833 2.97 0.00 34.73 0.86
285 288 4.618920 AGGAAGCCACCGGTTTATATAG 57.381 45.455 2.97 0.00 34.73 1.31
286 289 3.072211 GGAAGCCACCGGTTTATATAGC 58.928 50.000 2.97 0.00 0.00 2.97
287 290 2.853235 AGCCACCGGTTTATATAGCC 57.147 50.000 2.97 0.00 0.00 3.93
288 291 1.350019 AGCCACCGGTTTATATAGCCC 59.650 52.381 2.97 0.00 0.00 5.19
289 292 1.942586 GCCACCGGTTTATATAGCCCG 60.943 57.143 2.97 12.75 40.12 6.13
290 293 1.435577 CACCGGTTTATATAGCCCGC 58.564 55.000 2.97 0.00 39.12 6.13
291 294 0.037975 ACCGGTTTATATAGCCCGCG 60.038 55.000 0.00 0.00 39.12 6.46
292 295 1.356527 CCGGTTTATATAGCCCGCGC 61.357 60.000 0.00 0.00 39.12 6.86
293 296 1.356527 CGGTTTATATAGCCCGCGCC 61.357 60.000 0.00 0.00 33.20 6.53
294 297 1.356527 GGTTTATATAGCCCGCGCCG 61.357 60.000 0.00 0.00 34.57 6.46
295 298 0.668401 GTTTATATAGCCCGCGCCGT 60.668 55.000 0.00 0.00 34.57 5.68
296 299 0.668096 TTTATATAGCCCGCGCCGTG 60.668 55.000 0.00 0.00 34.57 4.94
297 300 1.808531 TTATATAGCCCGCGCCGTGT 61.809 55.000 0.00 0.00 34.57 4.49
298 301 2.480853 TATATAGCCCGCGCCGTGTG 62.481 60.000 0.00 0.00 34.57 3.82
311 314 3.637714 GTGTGTACACGTGGCAGG 58.362 61.111 21.57 5.50 37.10 4.85
312 315 1.068417 GTGTGTACACGTGGCAGGA 59.932 57.895 21.57 5.36 37.10 3.86
313 316 0.320421 GTGTGTACACGTGGCAGGAT 60.320 55.000 21.57 0.00 37.10 3.24
314 317 0.320334 TGTGTACACGTGGCAGGATG 60.320 55.000 21.57 10.64 40.87 3.51
315 318 1.019278 GTGTACACGTGGCAGGATGG 61.019 60.000 21.57 5.55 35.86 3.51
316 319 1.449601 GTACACGTGGCAGGATGGG 60.450 63.158 21.57 3.11 35.86 4.00
317 320 1.610967 TACACGTGGCAGGATGGGA 60.611 57.895 21.57 0.00 35.86 4.37
318 321 1.613317 TACACGTGGCAGGATGGGAG 61.613 60.000 21.57 0.00 35.86 4.30
319 322 3.402681 ACGTGGCAGGATGGGAGG 61.403 66.667 14.98 0.00 35.86 4.30
320 323 4.864334 CGTGGCAGGATGGGAGGC 62.864 72.222 0.00 0.00 35.86 4.70
321 324 4.864334 GTGGCAGGATGGGAGGCG 62.864 72.222 0.00 0.00 35.86 5.52
323 326 4.554036 GGCAGGATGGGAGGCGTC 62.554 72.222 0.00 0.00 35.86 5.19
324 327 4.899239 GCAGGATGGGAGGCGTCG 62.899 72.222 0.00 0.00 35.86 5.12
325 328 4.899239 CAGGATGGGAGGCGTCGC 62.899 72.222 15.79 15.79 36.17 5.19
328 331 4.286320 GATGGGAGGCGTCGCGAT 62.286 66.667 14.06 12.01 38.49 4.58
329 332 4.592192 ATGGGAGGCGTCGCGATG 62.592 66.667 23.84 23.84 38.49 3.84
342 345 2.104132 CGATGTCGCCCGTGATGA 59.896 61.111 0.00 0.00 0.00 2.92
343 346 1.946156 CGATGTCGCCCGTGATGAG 60.946 63.158 0.00 0.00 0.00 2.90
344 347 1.592669 GATGTCGCCCGTGATGAGG 60.593 63.158 0.00 0.00 0.00 3.86
345 348 2.016393 GATGTCGCCCGTGATGAGGA 62.016 60.000 0.00 0.00 0.00 3.71
346 349 1.613317 ATGTCGCCCGTGATGAGGAA 61.613 55.000 0.00 0.00 0.00 3.36
347 350 1.144057 GTCGCCCGTGATGAGGAAT 59.856 57.895 0.00 0.00 0.00 3.01
348 351 0.876342 GTCGCCCGTGATGAGGAATC 60.876 60.000 0.00 0.00 35.67 2.52
349 352 1.143838 CGCCCGTGATGAGGAATCA 59.856 57.895 0.00 0.00 43.24 2.57
350 353 0.461870 CGCCCGTGATGAGGAATCAA 60.462 55.000 0.00 0.00 46.90 2.57
351 354 1.811558 CGCCCGTGATGAGGAATCAAT 60.812 52.381 0.00 0.00 46.90 2.57
352 355 1.605710 GCCCGTGATGAGGAATCAATG 59.394 52.381 0.00 0.00 46.90 2.82
353 356 2.224606 CCCGTGATGAGGAATCAATGG 58.775 52.381 0.00 0.00 46.90 3.16
354 357 1.605710 CCGTGATGAGGAATCAATGGC 59.394 52.381 0.00 0.00 46.90 4.40
355 358 2.291365 CGTGATGAGGAATCAATGGCA 58.709 47.619 0.00 0.00 46.90 4.92
356 359 2.684374 CGTGATGAGGAATCAATGGCAA 59.316 45.455 0.00 0.00 46.90 4.52
357 360 3.242969 CGTGATGAGGAATCAATGGCAAG 60.243 47.826 0.00 0.00 46.90 4.01
358 361 3.067742 GTGATGAGGAATCAATGGCAAGG 59.932 47.826 0.00 0.00 46.90 3.61
359 362 1.477553 TGAGGAATCAATGGCAAGGC 58.522 50.000 0.00 0.00 0.00 4.35
360 363 1.272592 TGAGGAATCAATGGCAAGGCA 60.273 47.619 0.00 0.00 0.00 4.75
361 364 1.407979 GAGGAATCAATGGCAAGGCAG 59.592 52.381 2.05 0.00 0.00 4.85
362 365 1.006281 AGGAATCAATGGCAAGGCAGA 59.994 47.619 2.05 0.00 0.00 4.26
363 366 1.135721 GGAATCAATGGCAAGGCAGAC 59.864 52.381 2.05 0.00 0.00 3.51
364 367 1.135721 GAATCAATGGCAAGGCAGACC 59.864 52.381 2.05 0.00 0.00 3.85
365 368 1.033746 ATCAATGGCAAGGCAGACCG 61.034 55.000 2.05 0.00 42.76 4.79
366 369 1.675310 CAATGGCAAGGCAGACCGA 60.675 57.895 2.05 0.00 42.76 4.69
367 370 1.675641 AATGGCAAGGCAGACCGAC 60.676 57.895 2.05 0.00 42.76 4.79
368 371 3.958147 ATGGCAAGGCAGACCGACG 62.958 63.158 2.05 0.00 42.76 5.12
369 372 4.373116 GGCAAGGCAGACCGACGA 62.373 66.667 0.00 0.00 42.76 4.20
370 373 3.112709 GCAAGGCAGACCGACGAC 61.113 66.667 0.00 0.00 42.76 4.34
371 374 2.338620 CAAGGCAGACCGACGACA 59.661 61.111 0.00 0.00 42.76 4.35
372 375 1.300620 CAAGGCAGACCGACGACAA 60.301 57.895 0.00 0.00 42.76 3.18
373 376 1.300697 AAGGCAGACCGACGACAAC 60.301 57.895 0.00 0.00 42.76 3.32
374 377 2.710724 AAGGCAGACCGACGACAACC 62.711 60.000 0.00 0.00 42.76 3.77
375 378 2.338984 GCAGACCGACGACAACCT 59.661 61.111 0.00 0.00 0.00 3.50
376 379 1.300697 GCAGACCGACGACAACCTT 60.301 57.895 0.00 0.00 0.00 3.50
377 380 1.557443 GCAGACCGACGACAACCTTG 61.557 60.000 0.00 0.00 0.00 3.61
378 381 0.249322 CAGACCGACGACAACCTTGT 60.249 55.000 0.00 0.00 45.65 3.16
390 393 4.853924 ACAACCTTGTCATTGATTCCAC 57.146 40.909 0.00 0.00 36.50 4.02
391 394 3.253188 ACAACCTTGTCATTGATTCCACG 59.747 43.478 0.00 0.00 36.50 4.94
392 395 1.812571 ACCTTGTCATTGATTCCACGC 59.187 47.619 0.00 0.00 0.00 5.34
393 396 1.202065 CCTTGTCATTGATTCCACGCG 60.202 52.381 3.53 3.53 0.00 6.01
394 397 0.801872 TTGTCATTGATTCCACGCGG 59.198 50.000 12.47 0.00 0.00 6.46
395 398 1.024046 TGTCATTGATTCCACGCGGG 61.024 55.000 12.47 6.05 38.37 6.13
396 399 0.742990 GTCATTGATTCCACGCGGGA 60.743 55.000 11.66 11.66 46.61 5.14
410 413 3.920031 GGGAAACCGAGGCATTCC 58.080 61.111 15.18 15.18 43.64 3.01
411 414 2.112815 GGGAAACCGAGGCATTCCG 61.113 63.158 16.31 0.00 42.86 4.30
412 415 1.078708 GGAAACCGAGGCATTCCGA 60.079 57.895 10.33 0.00 33.86 4.55
413 416 1.366854 GGAAACCGAGGCATTCCGAC 61.367 60.000 10.33 0.00 33.86 4.79
414 417 1.693083 GAAACCGAGGCATTCCGACG 61.693 60.000 0.00 0.00 37.47 5.12
415 418 2.162338 AAACCGAGGCATTCCGACGA 62.162 55.000 0.00 0.00 38.53 4.20
416 419 2.582498 CCGAGGCATTCCGACGAC 60.582 66.667 0.00 0.00 38.53 4.34
417 420 2.949678 CGAGGCATTCCGACGACG 60.950 66.667 0.00 0.00 38.53 5.12
418 421 2.488355 GAGGCATTCCGACGACGA 59.512 61.111 9.28 0.00 42.66 4.20
419 422 1.872679 GAGGCATTCCGACGACGAC 60.873 63.158 9.28 0.00 42.66 4.34
420 423 3.245315 GGCATTCCGACGACGACG 61.245 66.667 12.66 12.66 42.66 5.12
421 424 2.202388 GCATTCCGACGACGACGA 60.202 61.111 20.63 2.40 42.66 4.20
422 425 2.215604 GCATTCCGACGACGACGAG 61.216 63.158 20.63 10.87 42.66 4.18
423 426 1.582937 CATTCCGACGACGACGAGG 60.583 63.158 20.63 15.97 42.66 4.63
424 427 3.392595 ATTCCGACGACGACGAGGC 62.393 63.158 20.63 2.09 42.66 4.70
466 469 4.383602 GCGGCTCTTTCGCGCAAA 62.384 61.111 8.75 6.52 43.71 3.68
467 470 2.251075 CGGCTCTTTCGCGCAAAA 59.749 55.556 8.75 0.00 0.00 2.44
468 471 1.369930 CGGCTCTTTCGCGCAAAAA 60.370 52.632 8.75 6.49 0.00 1.94
469 472 1.596841 CGGCTCTTTCGCGCAAAAAC 61.597 55.000 8.75 0.00 0.00 2.43
470 473 1.275471 GGCTCTTTCGCGCAAAAACC 61.275 55.000 8.75 0.00 0.00 3.27
471 474 0.593773 GCTCTTTCGCGCAAAAACCA 60.594 50.000 8.75 0.00 0.00 3.67
472 475 1.120437 CTCTTTCGCGCAAAAACCAC 58.880 50.000 8.75 0.00 0.00 4.16
473 476 0.736053 TCTTTCGCGCAAAAACCACT 59.264 45.000 8.75 0.00 0.00 4.00
474 477 1.120437 CTTTCGCGCAAAAACCACTC 58.880 50.000 8.75 0.00 0.00 3.51
475 478 0.590230 TTTCGCGCAAAAACCACTCG 60.590 50.000 8.75 0.00 0.00 4.18
476 479 2.381665 TTCGCGCAAAAACCACTCGG 62.382 55.000 8.75 0.00 38.77 4.63
477 480 2.729491 GCGCAAAAACCACTCGGC 60.729 61.111 0.30 0.00 34.57 5.54
478 481 2.050442 CGCAAAAACCACTCGGCC 60.050 61.111 0.00 0.00 34.57 6.13
479 482 2.338620 GCAAAAACCACTCGGCCC 59.661 61.111 0.00 0.00 34.57 5.80
480 483 2.642700 CAAAAACCACTCGGCCCG 59.357 61.111 0.00 0.00 34.57 6.13
481 484 2.596338 AAAAACCACTCGGCCCGG 60.596 61.111 1.90 0.00 34.57 5.73
524 527 4.547367 CGGGTTCGGCCTGGATCC 62.547 72.222 4.20 4.20 40.02 3.36
534 537 3.536917 CTGGATCCGCCGGTGCTA 61.537 66.667 10.27 0.00 40.66 3.49
535 538 3.078196 TGGATCCGCCGGTGCTAA 61.078 61.111 10.27 0.00 40.66 3.09
536 539 2.383245 CTGGATCCGCCGGTGCTAAT 62.383 60.000 10.27 2.19 40.66 1.73
537 540 1.227853 GGATCCGCCGGTGCTAATT 60.228 57.895 10.27 0.00 34.43 1.40
538 541 0.818040 GGATCCGCCGGTGCTAATTT 60.818 55.000 10.27 0.00 34.43 1.82
539 542 0.586802 GATCCGCCGGTGCTAATTTC 59.413 55.000 10.27 0.00 34.43 2.17
540 543 1.157870 ATCCGCCGGTGCTAATTTCG 61.158 55.000 10.27 0.00 34.43 3.46
541 544 2.707039 CGCCGGTGCTAATTTCGG 59.293 61.111 0.00 0.00 44.70 4.30
542 545 2.104253 CGCCGGTGCTAATTTCGGT 61.104 57.895 0.00 0.00 43.87 4.69
543 546 1.719709 GCCGGTGCTAATTTCGGTC 59.280 57.895 1.90 0.00 43.87 4.79
544 547 1.712018 GCCGGTGCTAATTTCGGTCC 61.712 60.000 1.90 0.00 43.87 4.46
545 548 0.391927 CCGGTGCTAATTTCGGTCCA 60.392 55.000 0.00 0.00 37.92 4.02
546 549 1.444836 CGGTGCTAATTTCGGTCCAA 58.555 50.000 0.00 0.00 0.00 3.53
547 550 1.396996 CGGTGCTAATTTCGGTCCAAG 59.603 52.381 0.00 0.00 0.00 3.61
548 551 1.132453 GGTGCTAATTTCGGTCCAAGC 59.868 52.381 0.00 0.00 0.00 4.01
549 552 1.132453 GTGCTAATTTCGGTCCAAGCC 59.868 52.381 0.00 0.00 0.00 4.35
557 560 4.052519 GGTCCAAGCCGACGAAAA 57.947 55.556 0.00 0.00 33.30 2.29
558 561 2.323213 GGTCCAAGCCGACGAAAAA 58.677 52.632 0.00 0.00 33.30 1.94
559 562 0.237498 GGTCCAAGCCGACGAAAAAG 59.763 55.000 0.00 0.00 33.30 2.27
560 563 0.237498 GTCCAAGCCGACGAAAAAGG 59.763 55.000 0.00 0.00 0.00 3.11
561 564 0.887387 TCCAAGCCGACGAAAAAGGG 60.887 55.000 0.00 0.00 0.00 3.95
562 565 1.081442 CAAGCCGACGAAAAAGGGC 60.081 57.895 0.00 0.00 45.91 5.19
564 567 2.868196 GCCGACGAAAAAGGGCTC 59.132 61.111 0.00 0.00 42.29 4.70
565 568 2.687805 GCCGACGAAAAAGGGCTCC 61.688 63.158 0.00 0.00 42.29 4.70
566 569 1.003718 CCGACGAAAAAGGGCTCCT 60.004 57.895 0.00 0.00 33.87 3.69
567 570 1.298859 CCGACGAAAAAGGGCTCCTG 61.299 60.000 0.00 0.00 32.13 3.86
568 571 1.298859 CGACGAAAAAGGGCTCCTGG 61.299 60.000 0.00 0.00 32.13 4.45
569 572 0.036306 GACGAAAAAGGGCTCCTGGA 59.964 55.000 0.00 0.00 32.13 3.86
570 573 0.476771 ACGAAAAAGGGCTCCTGGAA 59.523 50.000 0.00 0.00 32.13 3.53
571 574 1.133606 ACGAAAAAGGGCTCCTGGAAA 60.134 47.619 0.00 0.00 32.13 3.13
572 575 2.171003 CGAAAAAGGGCTCCTGGAAAT 58.829 47.619 0.00 0.00 32.13 2.17
573 576 2.094545 CGAAAAAGGGCTCCTGGAAATG 60.095 50.000 0.00 0.00 32.13 2.32
574 577 1.269958 AAAAGGGCTCCTGGAAATGC 58.730 50.000 0.00 0.00 32.13 3.56
575 578 0.967380 AAAGGGCTCCTGGAAATGCG 60.967 55.000 0.00 0.00 32.13 4.73
576 579 1.852157 AAGGGCTCCTGGAAATGCGA 61.852 55.000 0.00 0.00 32.13 5.10
577 580 2.115291 GGGCTCCTGGAAATGCGAC 61.115 63.158 0.00 0.00 0.00 5.19
578 581 2.115291 GGCTCCTGGAAATGCGACC 61.115 63.158 0.00 0.00 0.00 4.79
579 582 2.464459 GCTCCTGGAAATGCGACCG 61.464 63.158 0.00 0.00 0.00 4.79
580 583 1.218047 CTCCTGGAAATGCGACCGA 59.782 57.895 0.00 0.00 0.00 4.69
581 584 0.807667 CTCCTGGAAATGCGACCGAG 60.808 60.000 0.00 0.00 0.00 4.63
582 585 2.464459 CCTGGAAATGCGACCGAGC 61.464 63.158 0.00 0.00 37.71 5.03
583 586 2.435938 TGGAAATGCGACCGAGCC 60.436 61.111 0.00 0.00 36.02 4.70
584 587 3.564027 GGAAATGCGACCGAGCCG 61.564 66.667 0.00 0.00 36.02 5.52
585 588 2.813908 GAAATGCGACCGAGCCGT 60.814 61.111 0.00 0.00 36.02 5.68
586 589 2.358247 AAATGCGACCGAGCCGTT 60.358 55.556 0.00 0.00 36.02 4.44
587 590 1.908066 GAAATGCGACCGAGCCGTTT 61.908 55.000 0.00 0.00 36.02 3.60
588 591 1.512156 AAATGCGACCGAGCCGTTTT 61.512 50.000 0.00 0.00 36.02 2.43
589 592 1.512156 AATGCGACCGAGCCGTTTTT 61.512 50.000 0.00 0.00 36.02 1.94
611 614 4.933483 TGCCGACGCAAAAATCAC 57.067 50.000 0.00 0.00 43.74 3.06
612 615 1.284408 TGCCGACGCAAAAATCACC 59.716 52.632 0.00 0.00 43.74 4.02
613 616 1.443702 GCCGACGCAAAAATCACCC 60.444 57.895 0.00 0.00 34.03 4.61
614 617 1.154301 CCGACGCAAAAATCACCCG 60.154 57.895 0.00 0.00 0.00 5.28
615 618 1.154301 CGACGCAAAAATCACCCGG 60.154 57.895 0.00 0.00 0.00 5.73
616 619 1.211709 GACGCAAAAATCACCCGGG 59.788 57.895 22.25 22.25 0.00 5.73
617 620 1.228306 ACGCAAAAATCACCCGGGA 60.228 52.632 32.02 5.69 0.00 5.14
618 621 1.241315 ACGCAAAAATCACCCGGGAG 61.241 55.000 32.02 21.98 0.00 4.30
643 646 4.162690 GGGGACGCGGCTGAAGAT 62.163 66.667 13.91 0.00 0.00 2.40
644 647 2.892425 GGGACGCGGCTGAAGATG 60.892 66.667 13.91 0.00 0.00 2.90
645 648 3.567797 GGACGCGGCTGAAGATGC 61.568 66.667 13.91 0.00 0.00 3.91
646 649 2.510238 GACGCGGCTGAAGATGCT 60.510 61.111 12.47 0.00 0.00 3.79
647 650 2.510238 ACGCGGCTGAAGATGCTC 60.510 61.111 12.47 0.00 0.00 4.26
648 651 2.202851 CGCGGCTGAAGATGCTCT 60.203 61.111 0.00 0.00 0.00 4.09
649 652 1.812922 CGCGGCTGAAGATGCTCTT 60.813 57.895 0.00 0.00 39.87 2.85
650 653 0.528466 CGCGGCTGAAGATGCTCTTA 60.528 55.000 0.00 0.00 36.73 2.10
651 654 1.871408 CGCGGCTGAAGATGCTCTTAT 60.871 52.381 0.00 0.00 36.73 1.73
652 655 1.797635 GCGGCTGAAGATGCTCTTATC 59.202 52.381 0.00 0.00 36.73 1.75
653 656 2.547642 GCGGCTGAAGATGCTCTTATCT 60.548 50.000 0.00 0.00 36.73 1.98
655 658 4.125703 CGGCTGAAGATGCTCTTATCTTT 58.874 43.478 0.00 0.00 45.00 2.52
656 659 4.574013 CGGCTGAAGATGCTCTTATCTTTT 59.426 41.667 0.00 0.00 45.00 2.27
657 660 5.065731 CGGCTGAAGATGCTCTTATCTTTTT 59.934 40.000 0.00 0.00 45.00 1.94
687 690 8.822105 AATCGAATGTTCTTATCTTTAAACGC 57.178 30.769 0.00 0.00 0.00 4.84
688 691 6.463478 TCGAATGTTCTTATCTTTAAACGCG 58.537 36.000 3.53 3.53 0.00 6.01
689 692 5.671140 CGAATGTTCTTATCTTTAAACGCGG 59.329 40.000 12.47 0.00 0.00 6.46
690 693 6.454583 CGAATGTTCTTATCTTTAAACGCGGA 60.455 38.462 12.47 0.00 0.00 5.54
691 694 5.773239 TGTTCTTATCTTTAAACGCGGAG 57.227 39.130 12.47 0.00 0.00 4.63
692 695 5.232463 TGTTCTTATCTTTAAACGCGGAGT 58.768 37.500 12.47 0.00 0.00 3.85
694 697 4.178540 TCTTATCTTTAAACGCGGAGTGG 58.821 43.478 12.47 0.00 45.78 4.00
695 698 2.754946 ATCTTTAAACGCGGAGTGGA 57.245 45.000 12.47 1.43 45.78 4.02
696 699 2.529780 TCTTTAAACGCGGAGTGGAA 57.470 45.000 12.47 0.00 45.78 3.53
697 700 2.137523 TCTTTAAACGCGGAGTGGAAC 58.862 47.619 12.47 0.00 45.78 3.62
698 701 0.860533 TTTAAACGCGGAGTGGAACG 59.139 50.000 12.47 0.00 45.86 3.95
699 702 0.945265 TTAAACGCGGAGTGGAACGG 60.945 55.000 12.47 0.00 45.86 4.44
703 706 4.373116 GCGGAGTGGAACGGCAGA 62.373 66.667 0.00 0.00 45.86 4.26
704 707 2.342279 CGGAGTGGAACGGCAGAA 59.658 61.111 0.00 0.00 45.86 3.02
705 708 2.027625 CGGAGTGGAACGGCAGAAC 61.028 63.158 0.00 0.00 45.86 3.01
706 709 2.027625 GGAGTGGAACGGCAGAACG 61.028 63.158 0.00 0.00 45.86 3.95
707 710 1.006571 GAGTGGAACGGCAGAACGA 60.007 57.895 0.00 0.00 45.86 3.85
708 711 1.282930 GAGTGGAACGGCAGAACGAC 61.283 60.000 0.00 0.00 45.86 4.34
709 712 2.029964 TGGAACGGCAGAACGACC 59.970 61.111 0.00 0.00 37.61 4.79
710 713 2.342648 GGAACGGCAGAACGACCT 59.657 61.111 0.00 0.00 37.61 3.85
711 714 1.737008 GGAACGGCAGAACGACCTC 60.737 63.158 0.00 0.00 37.61 3.85
712 715 1.737008 GAACGGCAGAACGACCTCC 60.737 63.158 0.00 0.00 37.61 4.30
713 716 2.430382 GAACGGCAGAACGACCTCCA 62.430 60.000 0.00 0.00 37.61 3.86
714 717 2.035237 AACGGCAGAACGACCTCCAA 62.035 55.000 0.00 0.00 37.61 3.53
715 718 1.301401 CGGCAGAACGACCTCCAAA 60.301 57.895 0.00 0.00 35.47 3.28
716 719 1.291877 CGGCAGAACGACCTCCAAAG 61.292 60.000 0.00 0.00 35.47 2.77
717 720 1.578206 GGCAGAACGACCTCCAAAGC 61.578 60.000 0.00 0.00 0.00 3.51
718 721 0.603975 GCAGAACGACCTCCAAAGCT 60.604 55.000 0.00 0.00 0.00 3.74
719 722 1.433534 CAGAACGACCTCCAAAGCTC 58.566 55.000 0.00 0.00 0.00 4.09
720 723 0.321996 AGAACGACCTCCAAAGCTCC 59.678 55.000 0.00 0.00 0.00 4.70
721 724 0.034896 GAACGACCTCCAAAGCTCCA 59.965 55.000 0.00 0.00 0.00 3.86
722 725 0.472471 AACGACCTCCAAAGCTCCAA 59.528 50.000 0.00 0.00 0.00 3.53
723 726 0.250338 ACGACCTCCAAAGCTCCAAC 60.250 55.000 0.00 0.00 0.00 3.77
724 727 1.291877 CGACCTCCAAAGCTCCAACG 61.292 60.000 0.00 0.00 0.00 4.10
725 728 0.250338 GACCTCCAAAGCTCCAACGT 60.250 55.000 0.00 0.00 0.00 3.99
726 729 1.001633 GACCTCCAAAGCTCCAACGTA 59.998 52.381 0.00 0.00 0.00 3.57
727 730 1.002087 ACCTCCAAAGCTCCAACGTAG 59.998 52.381 0.00 0.00 0.00 3.51
728 731 1.079503 CTCCAAAGCTCCAACGTAGC 58.920 55.000 0.35 0.35 40.40 3.58
729 732 0.394938 TCCAAAGCTCCAACGTAGCA 59.605 50.000 11.19 0.00 42.62 3.49
730 733 0.517316 CCAAAGCTCCAACGTAGCAC 59.483 55.000 11.19 0.00 42.62 4.40
755 759 2.898920 AATGCCCACATCTCCGCCAG 62.899 60.000 0.00 0.00 34.62 4.85
791 795 4.100084 CAGCCTCCCACCGCATCA 62.100 66.667 0.00 0.00 0.00 3.07
868 881 2.032681 GAGCAAACACCTCCCGCT 59.967 61.111 0.00 0.00 35.14 5.52
911 927 1.761780 TTCCCTCCCAACTCCTCCCT 61.762 60.000 0.00 0.00 0.00 4.20
945 964 1.064685 ACCTCCGATTCCCAAATCCAC 60.065 52.381 0.00 0.00 38.46 4.02
966 985 1.251251 GCAAGCTTCAACATCCACCT 58.749 50.000 0.00 0.00 0.00 4.00
967 986 1.200948 GCAAGCTTCAACATCCACCTC 59.799 52.381 0.00 0.00 0.00 3.85
968 987 1.815003 CAAGCTTCAACATCCACCTCC 59.185 52.381 0.00 0.00 0.00 4.30
1332 4699 2.032528 TGTAGTGGTGCCAGCAGC 59.967 61.111 14.66 14.66 43.90 5.25
1383 4750 2.029020 TGTGTGCTGTGGTAGATGAGAC 60.029 50.000 0.00 0.00 0.00 3.36
1574 4986 4.263209 CGTCGCTGTACTGAATAAGTCTTG 59.737 45.833 3.61 0.00 40.56 3.02
1618 5030 3.334691 TCGTTGCTTCCCAGTTTAGATG 58.665 45.455 0.00 0.00 0.00 2.90
1716 5177 6.075984 AGTATGTCTATAAGGGGATCGTTGT 58.924 40.000 0.00 0.00 0.00 3.32
1792 5548 4.690748 CGGAATGAACTGTGAGCTTTTCTA 59.309 41.667 0.00 0.00 0.00 2.10
1842 5627 2.827921 ACATCAATCCTTTGGAGCAACC 59.172 45.455 0.00 0.00 34.05 3.77
1912 5697 2.303175 AGAACGACTATCTGAGGCTCC 58.697 52.381 12.86 0.00 0.00 4.70
1918 5703 0.103208 CTATCTGAGGCTCCGCGTTT 59.897 55.000 12.86 0.00 0.00 3.60
1919 5704 0.535335 TATCTGAGGCTCCGCGTTTT 59.465 50.000 12.86 0.00 0.00 2.43
1920 5705 0.321653 ATCTGAGGCTCCGCGTTTTT 60.322 50.000 12.86 0.00 0.00 1.94
1963 5755 4.943705 ACCATCGCTTTGAGAATTGTACAT 59.056 37.500 0.00 0.00 0.00 2.29
2077 5872 9.162764 GAGAAATTGTAAGGTGCTATTAGTCAA 57.837 33.333 0.00 0.00 0.00 3.18
2145 5940 5.183331 TGACGAAACATTGCTAGTCTACTCT 59.817 40.000 0.00 0.00 0.00 3.24
2178 5974 2.594303 TGTTGGGTCTTGCGGCTG 60.594 61.111 0.00 0.00 0.00 4.85
2210 6009 2.224305 GCTGGTAGGAGTGTTGAGTTGT 60.224 50.000 0.00 0.00 0.00 3.32
2211 6010 3.006537 GCTGGTAGGAGTGTTGAGTTGTA 59.993 47.826 0.00 0.00 0.00 2.41
2212 6011 4.810790 CTGGTAGGAGTGTTGAGTTGTAG 58.189 47.826 0.00 0.00 0.00 2.74
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
151 152 0.325671 CTCCCTCTCTACCAAGCCCA 60.326 60.000 0.00 0.00 0.00 5.36
160 161 0.703056 CCCTCCCCTCTCCCTCTCTA 60.703 65.000 0.00 0.00 0.00 2.43
227 230 4.988598 CCAACAGCCGACCGCAGT 62.989 66.667 0.00 0.00 39.19 4.40
237 240 2.193536 GGACACACCCACCAACAGC 61.194 63.158 0.00 0.00 0.00 4.40
238 241 0.819259 CTGGACACACCCACCAACAG 60.819 60.000 0.00 0.00 38.00 3.16
239 242 1.225983 CTGGACACACCCACCAACA 59.774 57.895 0.00 0.00 38.00 3.33
240 243 0.535102 CTCTGGACACACCCACCAAC 60.535 60.000 0.00 0.00 38.00 3.77
241 244 1.705002 CCTCTGGACACACCCACCAA 61.705 60.000 0.00 0.00 38.00 3.67
242 245 2.146724 CCTCTGGACACACCCACCA 61.147 63.158 0.00 0.00 38.00 4.17
243 246 2.750350 CCTCTGGACACACCCACC 59.250 66.667 0.00 0.00 38.00 4.61
244 247 2.032681 GCCTCTGGACACACCCAC 59.967 66.667 0.00 0.00 38.00 4.61
245 248 3.625897 CGCCTCTGGACACACCCA 61.626 66.667 0.00 0.00 38.00 4.51
246 249 2.788191 CTTCGCCTCTGGACACACCC 62.788 65.000 0.00 0.00 38.00 4.61
247 250 1.374758 CTTCGCCTCTGGACACACC 60.375 63.158 0.00 0.00 39.54 4.16
248 251 1.374758 CCTTCGCCTCTGGACACAC 60.375 63.158 0.00 0.00 0.00 3.82
249 252 1.118965 TTCCTTCGCCTCTGGACACA 61.119 55.000 0.00 0.00 0.00 3.72
250 253 0.390472 CTTCCTTCGCCTCTGGACAC 60.390 60.000 0.00 0.00 0.00 3.67
251 254 1.975327 CTTCCTTCGCCTCTGGACA 59.025 57.895 0.00 0.00 0.00 4.02
252 255 1.448717 GCTTCCTTCGCCTCTGGAC 60.449 63.158 0.00 0.00 0.00 4.02
253 256 2.660064 GGCTTCCTTCGCCTCTGGA 61.660 63.158 0.00 0.00 44.17 3.86
254 257 2.124942 GGCTTCCTTCGCCTCTGG 60.125 66.667 0.00 0.00 44.17 3.86
260 263 4.699522 ACCGGTGGCTTCCTTCGC 62.700 66.667 6.12 0.00 0.00 4.70
261 264 0.320946 TAAACCGGTGGCTTCCTTCG 60.321 55.000 8.52 0.00 0.00 3.79
262 265 2.124277 ATAAACCGGTGGCTTCCTTC 57.876 50.000 8.52 0.00 0.00 3.46
263 266 3.945640 ATATAAACCGGTGGCTTCCTT 57.054 42.857 8.52 0.00 0.00 3.36
264 267 3.244457 GCTATATAAACCGGTGGCTTCCT 60.244 47.826 8.52 0.00 0.00 3.36
265 268 3.072211 GCTATATAAACCGGTGGCTTCC 58.928 50.000 8.52 0.00 0.00 3.46
266 269 3.072211 GGCTATATAAACCGGTGGCTTC 58.928 50.000 8.52 0.00 0.00 3.86
267 270 2.224695 GGGCTATATAAACCGGTGGCTT 60.225 50.000 8.52 0.28 0.00 4.35
268 271 1.350019 GGGCTATATAAACCGGTGGCT 59.650 52.381 8.52 0.00 0.00 4.75
269 272 1.817357 GGGCTATATAAACCGGTGGC 58.183 55.000 8.52 5.74 0.00 5.01
270 273 1.942586 GCGGGCTATATAAACCGGTGG 60.943 57.143 8.52 0.00 46.04 4.61
271 274 1.435577 GCGGGCTATATAAACCGGTG 58.564 55.000 8.52 0.00 46.04 4.94
272 275 0.037975 CGCGGGCTATATAAACCGGT 60.038 55.000 20.20 0.00 46.04 5.28
273 276 1.356527 GCGCGGGCTATATAAACCGG 61.357 60.000 18.33 0.00 46.04 5.28
275 278 1.356527 CGGCGCGGGCTATATAAACC 61.357 60.000 24.48 2.94 39.81 3.27
276 279 0.668401 ACGGCGCGGGCTATATAAAC 60.668 55.000 24.48 3.70 39.81 2.01
277 280 0.668096 CACGGCGCGGGCTATATAAA 60.668 55.000 24.48 0.00 39.81 1.40
278 281 1.080366 CACGGCGCGGGCTATATAA 60.080 57.895 24.48 0.00 39.81 0.98
279 282 2.270257 ACACGGCGCGGGCTATATA 61.270 57.895 24.48 0.00 39.81 0.86
280 283 3.612681 ACACGGCGCGGGCTATAT 61.613 61.111 24.48 5.24 39.81 0.86
281 284 4.578898 CACACGGCGCGGGCTATA 62.579 66.667 24.48 0.00 39.81 1.31
294 297 0.320421 ATCCTGCCACGTGTACACAC 60.320 55.000 24.98 11.75 43.15 3.82
295 298 0.320334 CATCCTGCCACGTGTACACA 60.320 55.000 24.98 4.92 0.00 3.72
296 299 1.019278 CCATCCTGCCACGTGTACAC 61.019 60.000 16.32 16.32 0.00 2.90
297 300 1.295101 CCATCCTGCCACGTGTACA 59.705 57.895 15.65 11.40 0.00 2.90
298 301 1.449601 CCCATCCTGCCACGTGTAC 60.450 63.158 15.65 6.84 0.00 2.90
299 302 1.610967 TCCCATCCTGCCACGTGTA 60.611 57.895 15.65 1.96 0.00 2.90
300 303 2.927856 TCCCATCCTGCCACGTGT 60.928 61.111 15.65 0.00 0.00 4.49
301 304 2.124983 CTCCCATCCTGCCACGTG 60.125 66.667 9.08 9.08 0.00 4.49
302 305 3.402681 CCTCCCATCCTGCCACGT 61.403 66.667 0.00 0.00 0.00 4.49
303 306 4.864334 GCCTCCCATCCTGCCACG 62.864 72.222 0.00 0.00 0.00 4.94
304 307 4.864334 CGCCTCCCATCCTGCCAC 62.864 72.222 0.00 0.00 0.00 5.01
306 309 4.554036 GACGCCTCCCATCCTGCC 62.554 72.222 0.00 0.00 0.00 4.85
307 310 4.899239 CGACGCCTCCCATCCTGC 62.899 72.222 0.00 0.00 0.00 4.85
308 311 4.899239 GCGACGCCTCCCATCCTG 62.899 72.222 9.14 0.00 0.00 3.86
311 314 4.286320 ATCGCGACGCCTCCCATC 62.286 66.667 12.93 0.00 0.00 3.51
312 315 4.592192 CATCGCGACGCCTCCCAT 62.592 66.667 12.93 0.00 0.00 4.00
325 328 1.946156 CTCATCACGGGCGACATCG 60.946 63.158 0.00 0.00 43.27 3.84
326 329 1.592669 CCTCATCACGGGCGACATC 60.593 63.158 0.00 0.00 0.00 3.06
327 330 1.613317 TTCCTCATCACGGGCGACAT 61.613 55.000 0.00 0.00 0.00 3.06
328 331 1.613317 ATTCCTCATCACGGGCGACA 61.613 55.000 0.00 0.00 0.00 4.35
329 332 0.876342 GATTCCTCATCACGGGCGAC 60.876 60.000 0.00 0.00 0.00 5.19
330 333 1.326951 TGATTCCTCATCACGGGCGA 61.327 55.000 0.00 0.00 36.94 5.54
331 334 0.461870 TTGATTCCTCATCACGGGCG 60.462 55.000 0.00 0.00 41.98 6.13
332 335 1.605710 CATTGATTCCTCATCACGGGC 59.394 52.381 0.00 0.00 41.98 6.13
333 336 2.224606 CCATTGATTCCTCATCACGGG 58.775 52.381 0.00 0.00 41.98 5.28
334 337 1.605710 GCCATTGATTCCTCATCACGG 59.394 52.381 0.00 0.00 41.98 4.94
335 338 2.291365 TGCCATTGATTCCTCATCACG 58.709 47.619 0.00 0.00 41.98 4.35
336 339 3.067742 CCTTGCCATTGATTCCTCATCAC 59.932 47.826 0.00 0.00 41.98 3.06
337 340 3.293337 CCTTGCCATTGATTCCTCATCA 58.707 45.455 0.00 0.00 40.43 3.07
338 341 2.035576 GCCTTGCCATTGATTCCTCATC 59.964 50.000 0.00 0.00 0.00 2.92
339 342 2.037144 GCCTTGCCATTGATTCCTCAT 58.963 47.619 0.00 0.00 0.00 2.90
340 343 1.272592 TGCCTTGCCATTGATTCCTCA 60.273 47.619 0.00 0.00 0.00 3.86
341 344 1.407979 CTGCCTTGCCATTGATTCCTC 59.592 52.381 0.00 0.00 0.00 3.71
342 345 1.006281 TCTGCCTTGCCATTGATTCCT 59.994 47.619 0.00 0.00 0.00 3.36
343 346 1.135721 GTCTGCCTTGCCATTGATTCC 59.864 52.381 0.00 0.00 0.00 3.01
344 347 1.135721 GGTCTGCCTTGCCATTGATTC 59.864 52.381 0.00 0.00 0.00 2.52
345 348 1.188863 GGTCTGCCTTGCCATTGATT 58.811 50.000 0.00 0.00 0.00 2.57
346 349 1.033746 CGGTCTGCCTTGCCATTGAT 61.034 55.000 0.00 0.00 0.00 2.57
347 350 1.675310 CGGTCTGCCTTGCCATTGA 60.675 57.895 0.00 0.00 0.00 2.57
348 351 1.675310 TCGGTCTGCCTTGCCATTG 60.675 57.895 0.00 0.00 0.00 2.82
349 352 1.675641 GTCGGTCTGCCTTGCCATT 60.676 57.895 0.00 0.00 0.00 3.16
350 353 2.045926 GTCGGTCTGCCTTGCCAT 60.046 61.111 0.00 0.00 0.00 4.40
351 354 4.680237 CGTCGGTCTGCCTTGCCA 62.680 66.667 0.00 0.00 0.00 4.92
352 355 4.373116 TCGTCGGTCTGCCTTGCC 62.373 66.667 0.00 0.00 0.00 4.52
353 356 3.112709 GTCGTCGGTCTGCCTTGC 61.113 66.667 0.00 0.00 0.00 4.01
354 357 1.300620 TTGTCGTCGGTCTGCCTTG 60.301 57.895 0.00 0.00 0.00 3.61
355 358 1.300697 GTTGTCGTCGGTCTGCCTT 60.301 57.895 0.00 0.00 0.00 4.35
356 359 2.338984 GTTGTCGTCGGTCTGCCT 59.661 61.111 0.00 0.00 0.00 4.75
357 360 2.710724 AAGGTTGTCGTCGGTCTGCC 62.711 60.000 0.00 0.00 0.00 4.85
358 361 1.300697 AAGGTTGTCGTCGGTCTGC 60.301 57.895 0.00 0.00 0.00 4.26
359 362 0.249322 ACAAGGTTGTCGTCGGTCTG 60.249 55.000 0.00 0.00 36.50 3.51
360 363 0.031721 GACAAGGTTGTCGTCGGTCT 59.968 55.000 7.09 0.00 46.80 3.85
361 364 2.514267 GACAAGGTTGTCGTCGGTC 58.486 57.895 7.09 0.00 46.80 4.79
362 365 4.744316 GACAAGGTTGTCGTCGGT 57.256 55.556 7.09 0.00 46.80 4.69
369 372 3.253188 CGTGGAATCAATGACAAGGTTGT 59.747 43.478 0.00 0.00 45.65 3.32
370 373 3.825308 CGTGGAATCAATGACAAGGTTG 58.175 45.455 0.00 0.00 0.00 3.77
371 374 2.228822 GCGTGGAATCAATGACAAGGTT 59.771 45.455 0.00 0.00 0.00 3.50
372 375 1.812571 GCGTGGAATCAATGACAAGGT 59.187 47.619 0.00 0.00 0.00 3.50
373 376 1.202065 CGCGTGGAATCAATGACAAGG 60.202 52.381 0.00 0.00 0.00 3.61
374 377 1.202065 CCGCGTGGAATCAATGACAAG 60.202 52.381 10.20 0.00 37.49 3.16
375 378 0.801872 CCGCGTGGAATCAATGACAA 59.198 50.000 10.20 0.00 37.49 3.18
376 379 1.024046 CCCGCGTGGAATCAATGACA 61.024 55.000 18.79 0.00 37.49 3.58
377 380 0.742990 TCCCGCGTGGAATCAATGAC 60.743 55.000 18.79 0.00 41.40 3.06
378 381 1.599576 TCCCGCGTGGAATCAATGA 59.400 52.632 18.79 0.00 41.40 2.57
379 382 4.217035 TCCCGCGTGGAATCAATG 57.783 55.556 18.79 0.00 41.40 2.82
393 396 2.112815 CGGAATGCCTCGGTTTCCC 61.113 63.158 11.65 0.00 36.38 3.97
394 397 1.078708 TCGGAATGCCTCGGTTTCC 60.079 57.895 8.77 8.77 36.40 3.13
395 398 1.693083 CGTCGGAATGCCTCGGTTTC 61.693 60.000 0.00 0.00 0.00 2.78
396 399 1.740296 CGTCGGAATGCCTCGGTTT 60.740 57.895 0.00 0.00 0.00 3.27
397 400 2.125673 CGTCGGAATGCCTCGGTT 60.126 61.111 0.00 0.00 0.00 4.44
398 401 3.066190 TCGTCGGAATGCCTCGGT 61.066 61.111 4.70 0.00 32.70 4.69
399 402 2.582498 GTCGTCGGAATGCCTCGG 60.582 66.667 4.70 0.00 32.70 4.63
400 403 2.949678 CGTCGTCGGAATGCCTCG 60.950 66.667 0.00 0.00 0.00 4.63
401 404 1.872679 GTCGTCGTCGGAATGCCTC 60.873 63.158 1.55 0.00 37.69 4.70
402 405 2.181021 GTCGTCGTCGGAATGCCT 59.819 61.111 1.55 0.00 37.69 4.75
403 406 3.245315 CGTCGTCGTCGGAATGCC 61.245 66.667 3.90 0.00 37.69 4.40
404 407 2.202388 TCGTCGTCGTCGGAATGC 60.202 61.111 11.74 0.00 38.33 3.56
405 408 1.582937 CCTCGTCGTCGTCGGAATG 60.583 63.158 11.74 1.29 38.33 2.67
406 409 2.789917 CCTCGTCGTCGTCGGAAT 59.210 61.111 11.74 0.00 38.33 3.01
407 410 4.093952 GCCTCGTCGTCGTCGGAA 62.094 66.667 11.74 0.00 38.33 4.30
453 456 1.120437 GTGGTTTTTGCGCGAAAGAG 58.880 50.000 21.41 0.00 0.00 2.85
454 457 0.736053 AGTGGTTTTTGCGCGAAAGA 59.264 45.000 21.41 11.04 0.00 2.52
455 458 1.120437 GAGTGGTTTTTGCGCGAAAG 58.880 50.000 21.41 0.00 0.00 2.62
456 459 0.590230 CGAGTGGTTTTTGCGCGAAA 60.590 50.000 18.88 18.88 0.00 3.46
457 460 1.010574 CGAGTGGTTTTTGCGCGAA 60.011 52.632 12.10 5.81 0.00 4.70
458 461 2.629210 CGAGTGGTTTTTGCGCGA 59.371 55.556 12.10 0.00 0.00 5.87
459 462 2.426752 CCGAGTGGTTTTTGCGCG 60.427 61.111 0.00 0.00 0.00 6.86
460 463 2.729491 GCCGAGTGGTTTTTGCGC 60.729 61.111 0.00 0.00 37.67 6.09
461 464 2.050442 GGCCGAGTGGTTTTTGCG 60.050 61.111 0.00 0.00 37.67 4.85
462 465 2.338620 GGGCCGAGTGGTTTTTGC 59.661 61.111 0.00 0.00 37.67 3.68
463 466 2.642700 CGGGCCGAGTGGTTTTTG 59.357 61.111 24.41 0.00 37.67 2.44
464 467 2.596338 CCGGGCCGAGTGGTTTTT 60.596 61.111 30.79 0.00 37.67 1.94
507 510 4.547367 GGATCCAGGCCGAACCCG 62.547 72.222 6.95 0.00 40.58 5.28
525 528 1.712018 GGACCGAAATTAGCACCGGC 61.712 60.000 0.00 0.00 45.29 6.13
526 529 0.391927 TGGACCGAAATTAGCACCGG 60.392 55.000 0.00 0.00 46.65 5.28
527 530 1.396996 CTTGGACCGAAATTAGCACCG 59.603 52.381 0.00 0.00 0.00 4.94
528 531 1.132453 GCTTGGACCGAAATTAGCACC 59.868 52.381 0.00 0.00 0.00 5.01
529 532 1.132453 GGCTTGGACCGAAATTAGCAC 59.868 52.381 0.00 0.00 0.00 4.40
530 533 1.459450 GGCTTGGACCGAAATTAGCA 58.541 50.000 0.00 0.00 0.00 3.49
540 543 0.237498 CTTTTTCGTCGGCTTGGACC 59.763 55.000 0.00 0.00 33.30 4.46
541 544 0.237498 CCTTTTTCGTCGGCTTGGAC 59.763 55.000 0.00 0.00 0.00 4.02
542 545 0.887387 CCCTTTTTCGTCGGCTTGGA 60.887 55.000 0.00 0.00 0.00 3.53
543 546 1.579429 CCCTTTTTCGTCGGCTTGG 59.421 57.895 0.00 0.00 0.00 3.61
544 547 1.081442 GCCCTTTTTCGTCGGCTTG 60.081 57.895 0.00 0.00 38.41 4.01
545 548 3.351450 GCCCTTTTTCGTCGGCTT 58.649 55.556 0.00 0.00 38.41 4.35
546 549 2.430367 AGCCCTTTTTCGTCGGCT 59.570 55.556 0.00 0.00 46.96 5.52
547 550 2.687805 GGAGCCCTTTTTCGTCGGC 61.688 63.158 0.00 0.00 41.96 5.54
548 551 1.003718 AGGAGCCCTTTTTCGTCGG 60.004 57.895 0.00 0.00 0.00 4.79
549 552 1.298859 CCAGGAGCCCTTTTTCGTCG 61.299 60.000 0.00 0.00 0.00 5.12
550 553 0.036306 TCCAGGAGCCCTTTTTCGTC 59.964 55.000 0.00 0.00 0.00 4.20
551 554 0.476771 TTCCAGGAGCCCTTTTTCGT 59.523 50.000 0.00 0.00 0.00 3.85
552 555 1.616159 TTTCCAGGAGCCCTTTTTCG 58.384 50.000 0.00 0.00 0.00 3.46
553 556 2.354103 GCATTTCCAGGAGCCCTTTTTC 60.354 50.000 0.00 0.00 0.00 2.29
554 557 1.625315 GCATTTCCAGGAGCCCTTTTT 59.375 47.619 0.00 0.00 0.00 1.94
555 558 1.269958 GCATTTCCAGGAGCCCTTTT 58.730 50.000 0.00 0.00 0.00 2.27
556 559 0.967380 CGCATTTCCAGGAGCCCTTT 60.967 55.000 0.00 0.00 0.00 3.11
557 560 1.379044 CGCATTTCCAGGAGCCCTT 60.379 57.895 0.00 0.00 0.00 3.95
558 561 2.273449 CGCATTTCCAGGAGCCCT 59.727 61.111 0.00 0.00 0.00 5.19
559 562 2.115291 GTCGCATTTCCAGGAGCCC 61.115 63.158 0.00 0.00 0.00 5.19
560 563 2.115291 GGTCGCATTTCCAGGAGCC 61.115 63.158 0.00 0.00 0.00 4.70
561 564 2.464459 CGGTCGCATTTCCAGGAGC 61.464 63.158 0.00 0.00 0.00 4.70
562 565 0.807667 CTCGGTCGCATTTCCAGGAG 60.808 60.000 0.00 0.00 0.00 3.69
563 566 1.218047 CTCGGTCGCATTTCCAGGA 59.782 57.895 0.00 0.00 0.00 3.86
564 567 2.464459 GCTCGGTCGCATTTCCAGG 61.464 63.158 0.00 0.00 0.00 4.45
565 568 2.464459 GGCTCGGTCGCATTTCCAG 61.464 63.158 0.00 0.00 0.00 3.86
566 569 2.435938 GGCTCGGTCGCATTTCCA 60.436 61.111 0.00 0.00 0.00 3.53
567 570 3.564027 CGGCTCGGTCGCATTTCC 61.564 66.667 0.00 0.00 0.00 3.13
568 571 1.908066 AAACGGCTCGGTCGCATTTC 61.908 55.000 0.00 0.00 32.11 2.17
569 572 1.512156 AAAACGGCTCGGTCGCATTT 61.512 50.000 0.00 0.00 32.11 2.32
570 573 1.512156 AAAAACGGCTCGGTCGCATT 61.512 50.000 0.00 0.00 32.11 3.56
571 574 1.964373 AAAAACGGCTCGGTCGCAT 60.964 52.632 0.00 0.00 32.11 4.73
572 575 2.589442 AAAAACGGCTCGGTCGCA 60.589 55.556 0.00 0.00 32.11 5.10
595 598 1.443702 GGGTGATTTTTGCGTCGGC 60.444 57.895 0.00 0.00 40.52 5.54
596 599 1.154301 CGGGTGATTTTTGCGTCGG 60.154 57.895 0.00 0.00 0.00 4.79
597 600 1.154301 CCGGGTGATTTTTGCGTCG 60.154 57.895 0.00 0.00 0.00 5.12
598 601 1.211709 CCCGGGTGATTTTTGCGTC 59.788 57.895 14.18 0.00 0.00 5.19
599 602 1.228306 TCCCGGGTGATTTTTGCGT 60.228 52.632 22.86 0.00 0.00 5.24
600 603 1.506262 CTCCCGGGTGATTTTTGCG 59.494 57.895 22.86 0.00 0.00 4.85
601 604 1.890174 CCTCCCGGGTGATTTTTGC 59.110 57.895 24.22 0.00 0.00 3.68
602 605 1.890174 GCCTCCCGGGTGATTTTTG 59.110 57.895 24.22 6.99 37.43 2.44
603 606 4.434483 GCCTCCCGGGTGATTTTT 57.566 55.556 24.22 0.00 37.43 1.94
626 629 4.162690 ATCTTCAGCCGCGTCCCC 62.163 66.667 4.92 0.00 0.00 4.81
627 630 2.892425 CATCTTCAGCCGCGTCCC 60.892 66.667 4.92 0.00 0.00 4.46
628 631 3.567797 GCATCTTCAGCCGCGTCC 61.568 66.667 4.92 0.00 0.00 4.79
629 632 2.510238 AGCATCTTCAGCCGCGTC 60.510 61.111 4.92 0.00 0.00 5.19
630 633 2.510238 GAGCATCTTCAGCCGCGT 60.510 61.111 4.92 0.00 0.00 6.01
661 664 8.934947 GCGTTTAAAGATAAGAACATTCGATTC 58.065 33.333 0.00 0.00 0.00 2.52
662 665 7.634817 CGCGTTTAAAGATAAGAACATTCGATT 59.365 33.333 0.00 0.00 0.00 3.34
663 666 7.117454 CGCGTTTAAAGATAAGAACATTCGAT 58.883 34.615 0.00 0.00 0.00 3.59
664 667 6.454583 CCGCGTTTAAAGATAAGAACATTCGA 60.455 38.462 4.92 0.00 0.00 3.71
665 668 5.671140 CCGCGTTTAAAGATAAGAACATTCG 59.329 40.000 4.92 0.00 0.00 3.34
666 669 6.768078 TCCGCGTTTAAAGATAAGAACATTC 58.232 36.000 4.92 0.00 0.00 2.67
667 670 6.370718 ACTCCGCGTTTAAAGATAAGAACATT 59.629 34.615 4.92 0.00 0.00 2.71
668 671 5.873164 ACTCCGCGTTTAAAGATAAGAACAT 59.127 36.000 4.92 0.00 0.00 2.71
669 672 5.119588 CACTCCGCGTTTAAAGATAAGAACA 59.880 40.000 4.92 0.00 0.00 3.18
670 673 5.445540 CCACTCCGCGTTTAAAGATAAGAAC 60.446 44.000 4.92 0.00 0.00 3.01
671 674 4.628333 CCACTCCGCGTTTAAAGATAAGAA 59.372 41.667 4.92 0.00 0.00 2.52
672 675 4.082081 TCCACTCCGCGTTTAAAGATAAGA 60.082 41.667 4.92 0.00 0.00 2.10
673 676 4.178540 TCCACTCCGCGTTTAAAGATAAG 58.821 43.478 4.92 0.00 0.00 1.73
674 677 4.191033 TCCACTCCGCGTTTAAAGATAA 57.809 40.909 4.92 0.00 0.00 1.75
675 678 3.872511 TCCACTCCGCGTTTAAAGATA 57.127 42.857 4.92 0.00 0.00 1.98
676 679 2.740447 GTTCCACTCCGCGTTTAAAGAT 59.260 45.455 4.92 0.00 0.00 2.40
677 680 2.137523 GTTCCACTCCGCGTTTAAAGA 58.862 47.619 4.92 0.00 0.00 2.52
678 681 1.136446 CGTTCCACTCCGCGTTTAAAG 60.136 52.381 4.92 0.00 0.00 1.85
679 682 0.860533 CGTTCCACTCCGCGTTTAAA 59.139 50.000 4.92 0.00 0.00 1.52
680 683 0.945265 CCGTTCCACTCCGCGTTTAA 60.945 55.000 4.92 0.00 0.00 1.52
681 684 1.373246 CCGTTCCACTCCGCGTTTA 60.373 57.895 4.92 0.00 0.00 2.01
682 685 2.663852 CCGTTCCACTCCGCGTTT 60.664 61.111 4.92 0.00 0.00 3.60
686 689 3.876589 TTCTGCCGTTCCACTCCGC 62.877 63.158 0.00 0.00 0.00 5.54
687 690 2.027625 GTTCTGCCGTTCCACTCCG 61.028 63.158 0.00 0.00 0.00 4.63
688 691 2.027625 CGTTCTGCCGTTCCACTCC 61.028 63.158 0.00 0.00 0.00 3.85
689 692 1.006571 TCGTTCTGCCGTTCCACTC 60.007 57.895 0.00 0.00 0.00 3.51
690 693 1.300697 GTCGTTCTGCCGTTCCACT 60.301 57.895 0.00 0.00 0.00 4.00
691 694 2.315386 GGTCGTTCTGCCGTTCCAC 61.315 63.158 0.00 0.00 0.00 4.02
692 695 2.029964 GGTCGTTCTGCCGTTCCA 59.970 61.111 0.00 0.00 0.00 3.53
693 696 1.737008 GAGGTCGTTCTGCCGTTCC 60.737 63.158 0.00 0.00 0.00 3.62
694 697 1.737008 GGAGGTCGTTCTGCCGTTC 60.737 63.158 0.00 0.00 0.00 3.95
695 698 2.035237 TTGGAGGTCGTTCTGCCGTT 62.035 55.000 0.00 0.00 0.00 4.44
696 699 2.035237 TTTGGAGGTCGTTCTGCCGT 62.035 55.000 0.00 0.00 0.00 5.68
697 700 1.291877 CTTTGGAGGTCGTTCTGCCG 61.292 60.000 0.00 0.00 0.00 5.69
698 701 1.578206 GCTTTGGAGGTCGTTCTGCC 61.578 60.000 0.00 0.00 0.00 4.85
699 702 0.603975 AGCTTTGGAGGTCGTTCTGC 60.604 55.000 0.00 0.00 0.00 4.26
700 703 1.433534 GAGCTTTGGAGGTCGTTCTG 58.566 55.000 0.00 0.00 40.25 3.02
701 704 3.917072 GAGCTTTGGAGGTCGTTCT 57.083 52.632 0.00 0.00 40.25 3.01
707 710 1.002087 CTACGTTGGAGCTTTGGAGGT 59.998 52.381 0.00 0.00 36.03 3.85
708 711 1.726853 CTACGTTGGAGCTTTGGAGG 58.273 55.000 0.00 0.00 0.00 4.30
709 712 1.079503 GCTACGTTGGAGCTTTGGAG 58.920 55.000 0.00 0.00 36.96 3.86
710 713 0.394938 TGCTACGTTGGAGCTTTGGA 59.605 50.000 10.01 0.00 40.76 3.53
711 714 0.517316 GTGCTACGTTGGAGCTTTGG 59.483 55.000 10.01 0.00 40.76 3.28
712 715 1.225855 TGTGCTACGTTGGAGCTTTG 58.774 50.000 10.01 0.00 40.76 2.77
713 716 1.873591 CTTGTGCTACGTTGGAGCTTT 59.126 47.619 10.01 0.00 40.76 3.51
714 717 1.512926 CTTGTGCTACGTTGGAGCTT 58.487 50.000 10.01 0.00 40.76 3.74
715 718 0.951040 GCTTGTGCTACGTTGGAGCT 60.951 55.000 10.01 0.00 40.76 4.09
716 719 1.227999 TGCTTGTGCTACGTTGGAGC 61.228 55.000 0.00 0.00 40.48 4.70
717 720 1.225855 TTGCTTGTGCTACGTTGGAG 58.774 50.000 0.00 0.00 40.48 3.86
718 721 1.669604 TTTGCTTGTGCTACGTTGGA 58.330 45.000 0.00 0.00 40.48 3.53
719 722 2.318578 CATTTGCTTGTGCTACGTTGG 58.681 47.619 0.00 0.00 40.48 3.77
720 723 1.715519 GCATTTGCTTGTGCTACGTTG 59.284 47.619 0.00 0.00 40.48 4.10
721 724 1.335872 GGCATTTGCTTGTGCTACGTT 60.336 47.619 0.00 0.00 41.04 3.99
722 725 0.240945 GGCATTTGCTTGTGCTACGT 59.759 50.000 2.12 0.00 41.04 3.57
723 726 0.456653 GGGCATTTGCTTGTGCTACG 60.457 55.000 2.12 0.00 41.04 3.51
724 727 0.602562 TGGGCATTTGCTTGTGCTAC 59.397 50.000 2.12 3.22 41.04 3.58
725 728 0.602562 GTGGGCATTTGCTTGTGCTA 59.397 50.000 2.12 0.00 41.04 3.49
726 729 1.368579 GTGGGCATTTGCTTGTGCT 59.631 52.632 2.12 0.00 41.04 4.40
727 730 0.320946 ATGTGGGCATTTGCTTGTGC 60.321 50.000 2.12 0.10 41.70 4.57
728 731 1.274167 AGATGTGGGCATTTGCTTGTG 59.726 47.619 2.12 0.00 41.70 3.33
729 732 1.547372 GAGATGTGGGCATTTGCTTGT 59.453 47.619 2.12 0.00 41.70 3.16
730 733 1.134907 GGAGATGTGGGCATTTGCTTG 60.135 52.381 2.12 0.00 41.70 4.01
755 759 4.077184 TGGTGCGGATCGGTGACC 62.077 66.667 13.44 13.44 0.00 4.02
791 795 1.278985 TGGATTGCGATCAGAAGGTGT 59.721 47.619 15.92 0.00 33.77 4.16
911 927 3.831323 TCGGAGGTGACGGGTTTATATA 58.169 45.455 0.00 0.00 0.00 0.86
945 964 0.109597 GTGGATGTTGAAGCTTGCGG 60.110 55.000 2.10 0.00 0.00 5.69
966 985 0.324460 GGAGAAGAAGGGACTCGGGA 60.324 60.000 0.00 0.00 38.49 5.14
967 986 1.331399 GGGAGAAGAAGGGACTCGGG 61.331 65.000 0.00 0.00 38.49 5.14
968 987 0.614979 TGGGAGAAGAAGGGACTCGG 60.615 60.000 0.00 0.00 38.49 4.63
1332 4699 0.041312 CAAACGAGGAAGTTGCACCG 60.041 55.000 0.00 2.48 34.14 4.94
1335 4702 0.944386 GAGCAAACGAGGAAGTTGCA 59.056 50.000 9.96 0.00 34.14 4.08
1383 4750 2.096819 ACAACACACGCAAACCAGTAAG 59.903 45.455 0.00 0.00 0.00 2.34
1546 4958 0.728542 TTCAGTACAGCGACGCGATA 59.271 50.000 15.93 8.10 0.00 2.92
1574 4986 6.086765 CGAGTGTCAAATGCTTGAACAAATAC 59.913 38.462 0.00 0.00 43.18 1.89
1618 5030 9.567848 GAAAGACTGATTCAGTATAGCTATAGC 57.432 37.037 19.00 17.33 45.44 2.97
1698 5110 8.716674 AAGTATTACAACGATCCCCTTATAGA 57.283 34.615 0.00 0.00 0.00 1.98
1701 5113 6.557633 AGGAAGTATTACAACGATCCCCTTAT 59.442 38.462 0.00 0.00 33.32 1.73
1716 5177 5.955959 TGTGCTTACCTGAGAGGAAGTATTA 59.044 40.000 0.00 0.00 37.67 0.98
1792 5548 5.652014 TCAGAAACAGACCACTGAAAACAAT 59.348 36.000 0.00 0.00 46.03 2.71
1842 5627 9.546428 TTTGTATGTACCATATCAACTCTGATG 57.454 33.333 0.00 0.00 42.48 3.07
1877 5662 4.820716 AGTCGTTCTACGTATTAGAGGCAT 59.179 41.667 0.00 0.00 43.14 4.40
1918 5703 4.914177 ACTGTTATTAGGACGGGGAAAA 57.086 40.909 0.00 0.00 0.00 2.29
1919 5704 4.162131 GGTACTGTTATTAGGACGGGGAAA 59.838 45.833 0.00 0.00 32.01 3.13
1920 5705 3.706086 GGTACTGTTATTAGGACGGGGAA 59.294 47.826 0.00 0.00 32.01 3.97
1921 5706 3.299503 GGTACTGTTATTAGGACGGGGA 58.700 50.000 0.00 0.00 32.01 4.81
1922 5707 3.033184 TGGTACTGTTATTAGGACGGGG 58.967 50.000 0.00 0.00 32.01 5.73
1923 5708 4.558095 CGATGGTACTGTTATTAGGACGGG 60.558 50.000 0.00 0.00 32.01 5.28
1924 5709 4.543692 CGATGGTACTGTTATTAGGACGG 58.456 47.826 0.00 0.00 32.01 4.79
1936 5728 4.393062 ACAATTCTCAAAGCGATGGTACTG 59.607 41.667 0.00 0.00 0.00 2.74
2099 5894 1.486439 AGCGAATTTGGCAAAACACG 58.514 45.000 17.70 20.72 33.35 4.49
2132 5927 6.062749 CCTTACCATGTAGAGTAGACTAGCA 58.937 44.000 0.00 0.00 0.00 3.49
2145 5940 3.417101 CCAACACTTGCCTTACCATGTA 58.583 45.455 0.00 0.00 0.00 2.29
2210 6009 4.884668 AGTTTGGTGCTAGCAGTTACTA 57.115 40.909 20.03 0.59 0.00 1.82
2211 6010 3.771577 AGTTTGGTGCTAGCAGTTACT 57.228 42.857 20.03 15.68 0.00 2.24
2212 6011 4.036380 ACAAAGTTTGGTGCTAGCAGTTAC 59.964 41.667 20.03 13.66 34.12 2.50


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.