Multiple sequence alignment - TraesCS2B01G435000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G435000 chr2B 100.000 3185 0 0 1 3185 624994458 624997642 0.000000e+00 5882.0
1 TraesCS2B01G435000 chr2D 94.354 2037 89 11 340 2366 527642487 527644507 0.000000e+00 3101.0
2 TraesCS2B01G435000 chr2D 91.205 614 49 4 2358 2970 527644658 527645267 0.000000e+00 830.0
3 TraesCS2B01G435000 chr2A 93.914 1906 87 13 335 2224 672425653 672427545 0.000000e+00 2850.0
4 TraesCS2B01G435000 chr2A 91.843 613 50 0 2358 2970 672642086 672642698 0.000000e+00 856.0
5 TraesCS2B01G435000 chr2A 92.308 117 8 1 2250 2366 672641797 672641912 7.070000e-37 165.0
6 TraesCS2B01G435000 chr3B 97.235 217 6 0 2969 3185 493243062 493243278 5.020000e-98 368.0
7 TraesCS2B01G435000 chr3B 97.222 216 6 0 2970 3185 712603556 712603771 1.810000e-97 366.0
8 TraesCS2B01G435000 chr3B 97.222 216 6 0 2970 3185 712642952 712643167 1.810000e-97 366.0
9 TraesCS2B01G435000 chrUn 97.222 216 6 0 2970 3185 48892761 48892546 1.810000e-97 366.0
10 TraesCS2B01G435000 chr7B 97.222 216 6 0 2970 3185 726389729 726389944 1.810000e-97 366.0
11 TraesCS2B01G435000 chr7B 96.364 220 8 0 2966 3185 507352211 507351992 2.340000e-96 363.0
12 TraesCS2B01G435000 chr5B 97.222 216 6 0 2970 3185 53514098 53514313 1.810000e-97 366.0
13 TraesCS2B01G435000 chr4B 97.222 216 6 0 2970 3185 593225198 593225413 1.810000e-97 366.0
14 TraesCS2B01G435000 chr4B 97.222 216 6 0 2970 3185 594466445 594466660 1.810000e-97 366.0
15 TraesCS2B01G435000 chr1D 83.750 160 19 5 2792 2946 155747822 155747665 9.210000e-31 145.0
16 TraesCS2B01G435000 chr6D 90.000 60 6 0 1181 1240 318078765 318078824 9.470000e-11 78.7
17 TraesCS2B01G435000 chr6B 90.000 60 6 0 1181 1240 506383239 506383180 9.470000e-11 78.7
18 TraesCS2B01G435000 chr6A 90.909 55 5 0 1181 1235 455495273 455495327 1.230000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G435000 chr2B 624994458 624997642 3184 False 5882.0 5882 100.0000 1 3185 1 chr2B.!!$F1 3184
1 TraesCS2B01G435000 chr2D 527642487 527645267 2780 False 1965.5 3101 92.7795 340 2970 2 chr2D.!!$F1 2630
2 TraesCS2B01G435000 chr2A 672425653 672427545 1892 False 2850.0 2850 93.9140 335 2224 1 chr2A.!!$F1 1889
3 TraesCS2B01G435000 chr2A 672641797 672642698 901 False 510.5 856 92.0755 2250 2970 2 chr2A.!!$F2 720

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
64 65 0.035152 ATCGCCAATGAACCAGCTGA 60.035 50.0 17.39 0.00 0.00 4.26 F
80 81 0.099613 CTGAGTCATCGGTCCGACTG 59.900 60.0 18.08 15.57 42.48 3.51 F
108 109 0.179250 CTGAACGACAATGGCGAACG 60.179 55.0 18.23 0.00 0.00 3.95 F
113 114 0.457166 CGACAATGGCGAACGTAGGA 60.457 55.0 0.22 0.00 0.00 2.94 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1824 1851 0.537188 TCCTCCTCGTTGCTTGGATC 59.463 55.000 0.0 0.0 0.00 3.36 R
2004 2031 0.614294 TCTCCTCGTCTCCGTCTTCT 59.386 55.000 0.0 0.0 35.01 2.85 R
2024 2057 2.027625 GAGTTGTCACCTTCCCGCG 61.028 63.158 0.0 0.0 0.00 6.46 R
2226 2259 5.640189 ACATGAGAGCAATCAAAAGAAGG 57.360 39.130 0.0 0.0 31.76 3.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
48 49 9.869844 CTAGCTTAAATATTTCAGTTTCCATCG 57.130 33.333 3.39 0.00 0.00 3.84
49 50 7.196331 AGCTTAAATATTTCAGTTTCCATCGC 58.804 34.615 3.39 0.00 0.00 4.58
50 51 6.417930 GCTTAAATATTTCAGTTTCCATCGCC 59.582 38.462 3.39 0.00 0.00 5.54
51 52 5.913137 AAATATTTCAGTTTCCATCGCCA 57.087 34.783 0.00 0.00 0.00 5.69
52 53 5.913137 AATATTTCAGTTTCCATCGCCAA 57.087 34.783 0.00 0.00 0.00 4.52
53 54 6.469782 AATATTTCAGTTTCCATCGCCAAT 57.530 33.333 0.00 0.00 0.00 3.16
54 55 3.574284 TTTCAGTTTCCATCGCCAATG 57.426 42.857 0.00 0.00 34.93 2.82
55 56 2.488204 TCAGTTTCCATCGCCAATGA 57.512 45.000 0.00 0.00 37.59 2.57
56 57 2.789213 TCAGTTTCCATCGCCAATGAA 58.211 42.857 0.00 0.00 37.59 2.57
57 58 2.487762 TCAGTTTCCATCGCCAATGAAC 59.512 45.455 0.00 0.00 37.59 3.18
58 59 1.818674 AGTTTCCATCGCCAATGAACC 59.181 47.619 0.00 0.00 37.59 3.62
59 60 1.543802 GTTTCCATCGCCAATGAACCA 59.456 47.619 0.00 0.00 37.59 3.67
60 61 1.462616 TTCCATCGCCAATGAACCAG 58.537 50.000 0.00 0.00 37.59 4.00
61 62 1.031571 TCCATCGCCAATGAACCAGC 61.032 55.000 0.00 0.00 37.59 4.85
62 63 1.033746 CCATCGCCAATGAACCAGCT 61.034 55.000 0.00 0.00 37.59 4.24
63 64 0.099968 CATCGCCAATGAACCAGCTG 59.900 55.000 6.78 6.78 37.59 4.24
64 65 0.035152 ATCGCCAATGAACCAGCTGA 60.035 50.000 17.39 0.00 0.00 4.26
65 66 0.674581 TCGCCAATGAACCAGCTGAG 60.675 55.000 17.39 8.04 0.00 3.35
66 67 0.957395 CGCCAATGAACCAGCTGAGT 60.957 55.000 17.39 8.77 0.00 3.41
67 68 0.807496 GCCAATGAACCAGCTGAGTC 59.193 55.000 17.39 12.36 0.00 3.36
68 69 1.883638 GCCAATGAACCAGCTGAGTCA 60.884 52.381 17.39 17.82 0.00 3.41
69 70 2.719739 CCAATGAACCAGCTGAGTCAT 58.280 47.619 17.39 19.26 0.00 3.06
70 71 2.681848 CCAATGAACCAGCTGAGTCATC 59.318 50.000 23.97 13.27 0.00 2.92
71 72 2.306341 ATGAACCAGCTGAGTCATCG 57.694 50.000 17.39 0.00 0.00 3.84
72 73 0.247460 TGAACCAGCTGAGTCATCGG 59.753 55.000 17.39 0.00 34.66 4.18
73 74 0.247736 GAACCAGCTGAGTCATCGGT 59.752 55.000 17.39 0.00 33.99 4.69
74 75 0.247736 AACCAGCTGAGTCATCGGTC 59.752 55.000 17.39 0.00 33.99 4.79
75 76 1.142748 CCAGCTGAGTCATCGGTCC 59.857 63.158 17.39 0.00 33.99 4.46
76 77 1.226802 CAGCTGAGTCATCGGTCCG 60.227 63.158 8.42 4.39 33.99 4.79
77 78 1.378646 AGCTGAGTCATCGGTCCGA 60.379 57.895 18.01 18.01 41.13 4.55
78 79 1.226717 GCTGAGTCATCGGTCCGAC 60.227 63.158 18.08 4.61 39.18 4.79
79 80 1.658686 GCTGAGTCATCGGTCCGACT 61.659 60.000 18.08 10.23 45.07 4.18
80 81 0.099613 CTGAGTCATCGGTCCGACTG 59.900 60.000 18.08 15.57 42.48 3.51
81 82 0.322187 TGAGTCATCGGTCCGACTGA 60.322 55.000 18.08 17.54 42.48 3.41
82 83 1.025812 GAGTCATCGGTCCGACTGAT 58.974 55.000 18.08 15.94 44.62 2.90
88 89 3.543680 ATCGGTCCGACTGATGAAAAT 57.456 42.857 18.08 0.00 42.31 1.82
89 90 2.888594 TCGGTCCGACTGATGAAAATC 58.111 47.619 10.71 0.00 0.00 2.17
90 91 2.496070 TCGGTCCGACTGATGAAAATCT 59.504 45.455 10.71 0.00 0.00 2.40
91 92 2.604914 CGGTCCGACTGATGAAAATCTG 59.395 50.000 4.91 0.00 0.00 2.90
92 93 3.676049 CGGTCCGACTGATGAAAATCTGA 60.676 47.826 4.91 0.00 0.00 3.27
93 94 4.253685 GGTCCGACTGATGAAAATCTGAA 58.746 43.478 0.00 0.00 0.00 3.02
94 95 4.093556 GGTCCGACTGATGAAAATCTGAAC 59.906 45.833 0.00 0.00 0.00 3.18
95 96 3.926527 TCCGACTGATGAAAATCTGAACG 59.073 43.478 0.34 0.00 0.00 3.95
96 97 3.926527 CCGACTGATGAAAATCTGAACGA 59.073 43.478 0.00 0.00 0.00 3.85
97 98 4.201628 CCGACTGATGAAAATCTGAACGAC 60.202 45.833 0.00 0.00 0.00 4.34
98 99 4.385748 CGACTGATGAAAATCTGAACGACA 59.614 41.667 0.00 0.00 0.00 4.35
99 100 5.107491 CGACTGATGAAAATCTGAACGACAA 60.107 40.000 0.00 0.00 0.00 3.18
100 101 6.401474 CGACTGATGAAAATCTGAACGACAAT 60.401 38.462 0.00 0.00 0.00 2.71
101 102 6.605849 ACTGATGAAAATCTGAACGACAATG 58.394 36.000 0.00 0.00 0.00 2.82
102 103 5.941733 TGATGAAAATCTGAACGACAATGG 58.058 37.500 0.00 0.00 0.00 3.16
103 104 4.159377 TGAAAATCTGAACGACAATGGC 57.841 40.909 0.00 0.00 0.00 4.40
104 105 2.900122 AAATCTGAACGACAATGGCG 57.100 45.000 7.07 7.07 0.00 5.69
105 106 2.093306 AATCTGAACGACAATGGCGA 57.907 45.000 18.23 0.00 0.00 5.54
106 107 2.093306 ATCTGAACGACAATGGCGAA 57.907 45.000 18.23 0.00 0.00 4.70
107 108 1.144969 TCTGAACGACAATGGCGAAC 58.855 50.000 18.23 9.17 0.00 3.95
108 109 0.179250 CTGAACGACAATGGCGAACG 60.179 55.000 18.23 0.00 0.00 3.95
109 110 0.876777 TGAACGACAATGGCGAACGT 60.877 50.000 18.23 0.00 38.81 3.99
110 111 1.062258 GAACGACAATGGCGAACGTA 58.938 50.000 18.23 0.00 36.20 3.57
111 112 1.058695 GAACGACAATGGCGAACGTAG 59.941 52.381 18.23 0.00 36.20 3.51
112 113 0.734942 ACGACAATGGCGAACGTAGG 60.735 55.000 18.23 0.00 35.49 3.18
113 114 0.457166 CGACAATGGCGAACGTAGGA 60.457 55.000 0.22 0.00 0.00 2.94
114 115 1.801395 CGACAATGGCGAACGTAGGAT 60.801 52.381 0.22 0.00 0.00 3.24
115 116 1.859080 GACAATGGCGAACGTAGGATC 59.141 52.381 0.00 0.00 0.00 3.36
116 117 1.480954 ACAATGGCGAACGTAGGATCT 59.519 47.619 0.00 0.00 0.00 2.75
117 118 2.128035 CAATGGCGAACGTAGGATCTC 58.872 52.381 0.00 0.00 0.00 2.75
118 119 1.399714 ATGGCGAACGTAGGATCTCA 58.600 50.000 0.00 0.00 0.00 3.27
119 120 1.179152 TGGCGAACGTAGGATCTCAA 58.821 50.000 0.00 0.00 0.00 3.02
120 121 1.135199 TGGCGAACGTAGGATCTCAAC 60.135 52.381 0.00 0.00 0.00 3.18
121 122 1.135199 GGCGAACGTAGGATCTCAACA 60.135 52.381 0.00 0.00 0.00 3.33
122 123 1.918609 GCGAACGTAGGATCTCAACAC 59.081 52.381 0.00 0.00 0.00 3.32
123 124 2.415625 GCGAACGTAGGATCTCAACACT 60.416 50.000 0.00 0.00 0.00 3.55
124 125 3.172050 CGAACGTAGGATCTCAACACTG 58.828 50.000 0.00 0.00 0.00 3.66
125 126 3.119955 CGAACGTAGGATCTCAACACTGA 60.120 47.826 0.00 0.00 0.00 3.41
151 152 5.829829 GGTACCACGGTTTAAAATTTGTGA 58.170 37.500 7.15 0.00 0.00 3.58
152 153 6.271566 GGTACCACGGTTTAAAATTTGTGAA 58.728 36.000 7.15 0.00 0.00 3.18
153 154 6.755607 GGTACCACGGTTTAAAATTTGTGAAA 59.244 34.615 7.15 0.00 0.00 2.69
154 155 7.277319 GGTACCACGGTTTAAAATTTGTGAAAA 59.723 33.333 7.15 0.00 0.00 2.29
155 156 7.851387 ACCACGGTTTAAAATTTGTGAAAAT 57.149 28.000 5.83 0.00 0.00 1.82
156 157 8.270080 ACCACGGTTTAAAATTTGTGAAAATT 57.730 26.923 5.83 0.00 34.09 1.82
157 158 8.731605 ACCACGGTTTAAAATTTGTGAAAATTT 58.268 25.926 5.83 3.86 42.33 1.82
216 217 8.837099 AATCATAGTTCCAACAAATAATCCCA 57.163 30.769 0.00 0.00 0.00 4.37
217 218 8.837099 ATCATAGTTCCAACAAATAATCCCAA 57.163 30.769 0.00 0.00 0.00 4.12
218 219 8.657387 TCATAGTTCCAACAAATAATCCCAAA 57.343 30.769 0.00 0.00 0.00 3.28
219 220 9.094578 TCATAGTTCCAACAAATAATCCCAAAA 57.905 29.630 0.00 0.00 0.00 2.44
220 221 9.717942 CATAGTTCCAACAAATAATCCCAAAAA 57.282 29.630 0.00 0.00 0.00 1.94
221 222 9.942850 ATAGTTCCAACAAATAATCCCAAAAAG 57.057 29.630 0.00 0.00 0.00 2.27
222 223 6.710295 AGTTCCAACAAATAATCCCAAAAAGC 59.290 34.615 0.00 0.00 0.00 3.51
223 224 6.179906 TCCAACAAATAATCCCAAAAAGCA 57.820 33.333 0.00 0.00 0.00 3.91
224 225 6.777782 TCCAACAAATAATCCCAAAAAGCAT 58.222 32.000 0.00 0.00 0.00 3.79
225 226 7.230027 TCCAACAAATAATCCCAAAAAGCATT 58.770 30.769 0.00 0.00 0.00 3.56
226 227 8.378565 TCCAACAAATAATCCCAAAAAGCATTA 58.621 29.630 0.00 0.00 0.00 1.90
227 228 8.450180 CCAACAAATAATCCCAAAAAGCATTAC 58.550 33.333 0.00 0.00 0.00 1.89
228 229 8.997323 CAACAAATAATCCCAAAAAGCATTACA 58.003 29.630 0.00 0.00 0.00 2.41
229 230 9.737844 AACAAATAATCCCAAAAAGCATTACAT 57.262 25.926 0.00 0.00 0.00 2.29
230 231 9.737844 ACAAATAATCCCAAAAAGCATTACATT 57.262 25.926 0.00 0.00 0.00 2.71
231 232 9.991388 CAAATAATCCCAAAAAGCATTACATTG 57.009 29.630 0.00 0.00 0.00 2.82
232 233 9.737844 AAATAATCCCAAAAAGCATTACATTGT 57.262 25.926 0.00 0.00 0.00 2.71
233 234 9.737844 AATAATCCCAAAAAGCATTACATTGTT 57.262 25.926 0.00 0.00 0.00 2.83
234 235 7.437793 AATCCCAAAAAGCATTACATTGTTG 57.562 32.000 0.00 0.00 0.00 3.33
235 236 5.303971 TCCCAAAAAGCATTACATTGTTGG 58.696 37.500 0.00 0.70 35.17 3.77
236 237 5.070981 TCCCAAAAAGCATTACATTGTTGGA 59.929 36.000 8.18 0.00 37.11 3.53
237 238 5.939296 CCCAAAAAGCATTACATTGTTGGAT 59.061 36.000 8.18 0.00 37.11 3.41
238 239 7.038729 TCCCAAAAAGCATTACATTGTTGGATA 60.039 33.333 8.18 0.00 37.11 2.59
239 240 7.605691 CCCAAAAAGCATTACATTGTTGGATAA 59.394 33.333 8.18 0.00 37.11 1.75
240 241 8.658609 CCAAAAAGCATTACATTGTTGGATAAG 58.341 33.333 1.35 0.00 37.11 1.73
241 242 9.206870 CAAAAAGCATTACATTGTTGGATAAGT 57.793 29.630 0.00 0.00 0.00 2.24
244 245 7.807977 AGCATTACATTGTTGGATAAGTAGG 57.192 36.000 0.00 0.00 0.00 3.18
245 246 7.346471 AGCATTACATTGTTGGATAAGTAGGT 58.654 34.615 0.00 0.00 0.00 3.08
246 247 7.834181 AGCATTACATTGTTGGATAAGTAGGTT 59.166 33.333 0.00 0.00 0.00 3.50
247 248 8.129211 GCATTACATTGTTGGATAAGTAGGTTC 58.871 37.037 0.00 0.00 0.00 3.62
248 249 9.173021 CATTACATTGTTGGATAAGTAGGTTCA 57.827 33.333 0.00 0.00 0.00 3.18
249 250 9.747898 ATTACATTGTTGGATAAGTAGGTTCAA 57.252 29.630 0.00 0.00 0.00 2.69
250 251 9.747898 TTACATTGTTGGATAAGTAGGTTCAAT 57.252 29.630 0.00 0.00 0.00 2.57
252 253 9.174166 ACATTGTTGGATAAGTAGGTTCAATAC 57.826 33.333 0.00 0.00 0.00 1.89
253 254 9.173021 CATTGTTGGATAAGTAGGTTCAATACA 57.827 33.333 0.00 0.00 0.00 2.29
254 255 9.920946 ATTGTTGGATAAGTAGGTTCAATACAT 57.079 29.630 0.00 0.00 0.00 2.29
255 256 9.747898 TTGTTGGATAAGTAGGTTCAATACATT 57.252 29.630 0.00 0.00 0.00 2.71
294 295 5.528043 TTTTGCATTTTTAGACAGCCTCA 57.472 34.783 0.00 0.00 0.00 3.86
295 296 4.503741 TTGCATTTTTAGACAGCCTCAC 57.496 40.909 0.00 0.00 0.00 3.51
296 297 3.754965 TGCATTTTTAGACAGCCTCACT 58.245 40.909 0.00 0.00 0.00 3.41
306 307 3.540211 AGCCTCACTGATTCGGTTG 57.460 52.632 0.00 0.00 0.00 3.77
307 308 0.674895 AGCCTCACTGATTCGGTTGC 60.675 55.000 0.00 0.00 0.00 4.17
308 309 0.674895 GCCTCACTGATTCGGTTGCT 60.675 55.000 0.00 0.00 0.00 3.91
309 310 1.813513 CCTCACTGATTCGGTTGCTT 58.186 50.000 0.00 0.00 0.00 3.91
310 311 2.154462 CCTCACTGATTCGGTTGCTTT 58.846 47.619 0.00 0.00 0.00 3.51
311 312 3.334691 CCTCACTGATTCGGTTGCTTTA 58.665 45.455 0.00 0.00 0.00 1.85
312 313 3.751175 CCTCACTGATTCGGTTGCTTTAA 59.249 43.478 0.00 0.00 0.00 1.52
313 314 4.215399 CCTCACTGATTCGGTTGCTTTAAA 59.785 41.667 0.00 0.00 0.00 1.52
314 315 5.278266 CCTCACTGATTCGGTTGCTTTAAAA 60.278 40.000 0.00 0.00 0.00 1.52
315 316 5.516090 TCACTGATTCGGTTGCTTTAAAAC 58.484 37.500 0.00 0.00 0.00 2.43
316 317 5.298276 TCACTGATTCGGTTGCTTTAAAACT 59.702 36.000 0.00 0.00 0.00 2.66
317 318 6.483974 TCACTGATTCGGTTGCTTTAAAACTA 59.516 34.615 0.00 0.00 0.00 2.24
318 319 7.174253 TCACTGATTCGGTTGCTTTAAAACTAT 59.826 33.333 0.00 0.00 0.00 2.12
319 320 7.271223 CACTGATTCGGTTGCTTTAAAACTATG 59.729 37.037 0.00 0.00 0.00 2.23
320 321 6.090129 TGATTCGGTTGCTTTAAAACTATGC 58.910 36.000 0.00 0.00 0.00 3.14
321 322 4.073169 TCGGTTGCTTTAAAACTATGCG 57.927 40.909 0.00 0.00 0.00 4.73
322 323 2.592459 CGGTTGCTTTAAAACTATGCGC 59.408 45.455 0.00 0.00 0.00 6.09
323 324 3.570559 GGTTGCTTTAAAACTATGCGCA 58.429 40.909 14.96 14.96 0.00 6.09
324 325 3.363724 GGTTGCTTTAAAACTATGCGCAC 59.636 43.478 14.90 0.00 0.00 5.34
325 326 3.906014 TGCTTTAAAACTATGCGCACA 57.094 38.095 14.90 0.00 0.00 4.57
326 327 4.230314 TGCTTTAAAACTATGCGCACAA 57.770 36.364 14.90 2.38 0.00 3.33
327 328 4.225984 TGCTTTAAAACTATGCGCACAAG 58.774 39.130 14.90 16.64 0.00 3.16
328 329 4.023622 TGCTTTAAAACTATGCGCACAAGA 60.024 37.500 24.14 5.86 0.00 3.02
329 330 5.095490 GCTTTAAAACTATGCGCACAAGAT 58.905 37.500 24.14 12.54 0.00 2.40
330 331 5.572896 GCTTTAAAACTATGCGCACAAGATT 59.427 36.000 24.14 17.10 0.00 2.40
331 332 6.237306 GCTTTAAAACTATGCGCACAAGATTC 60.237 38.462 24.14 6.55 0.00 2.52
332 333 4.764679 AAAACTATGCGCACAAGATTCA 57.235 36.364 24.14 0.00 0.00 2.57
333 334 4.346734 AAACTATGCGCACAAGATTCAG 57.653 40.909 24.14 9.70 0.00 3.02
336 337 0.961857 ATGCGCACAAGATTCAGCCA 60.962 50.000 14.90 0.00 0.00 4.75
355 356 2.159653 CCAAACATAGCACGCTCTGTTC 60.160 50.000 19.27 0.00 40.75 3.18
366 367 0.457681 GCTCTGTTCTCTGGAGCGTC 60.458 60.000 0.00 0.00 42.03 5.19
380 381 2.494918 CGTCCCTGAACCTAGCGG 59.505 66.667 0.00 0.00 0.00 5.52
381 382 2.901042 GTCCCTGAACCTAGCGGG 59.099 66.667 0.00 0.00 41.89 6.13
444 445 3.686760 GGCTCCAAAGTCCAAGCC 58.313 61.111 0.00 0.00 46.76 4.35
446 447 3.957288 GCTCCAAAGTCCAAGCCTA 57.043 52.632 0.00 0.00 0.00 3.93
447 448 2.200373 GCTCCAAAGTCCAAGCCTAA 57.800 50.000 0.00 0.00 0.00 2.69
476 477 3.993103 GCTCATCAGCAAATGCGC 58.007 55.556 0.00 0.00 46.06 6.09
677 679 1.204312 GCACACGAGTCCTTTTCGC 59.796 57.895 0.00 0.00 41.57 4.70
678 680 1.487231 CACACGAGTCCTTTTCGCG 59.513 57.895 0.00 0.00 41.57 5.87
733 735 2.650322 GTTTCCCTCCACAGTTGAACA 58.350 47.619 0.00 0.00 0.00 3.18
755 757 1.771854 TGCCCTCGCCAGGATTAATAA 59.228 47.619 0.00 0.00 43.65 1.40
757 759 3.010420 GCCCTCGCCAGGATTAATAATC 58.990 50.000 0.00 4.47 43.65 1.75
758 760 3.307762 GCCCTCGCCAGGATTAATAATCT 60.308 47.826 12.19 0.00 43.65 2.40
760 762 5.316987 CCCTCGCCAGGATTAATAATCTTT 58.683 41.667 12.19 0.00 43.65 2.52
866 877 1.684386 CCTCTCCTCGCCAGCAAGAT 61.684 60.000 0.00 0.00 0.00 2.40
933 944 2.417515 GCCTAGCCTAATAGCCGATCAC 60.418 54.545 0.00 0.00 0.00 3.06
946 957 2.282887 ATCACACAAACCCGGCCC 60.283 61.111 0.00 0.00 0.00 5.80
995 1010 5.282310 CGCACAAATTTTCTTCATCTTCTCG 59.718 40.000 0.00 0.00 0.00 4.04
1286 1304 2.356667 GGTGGCCCCTTCTTCCAG 59.643 66.667 0.00 0.00 0.00 3.86
1288 1306 2.209809 TGGCCCCTTCTTCCAGGA 59.790 61.111 0.00 0.00 35.71 3.86
1766 1793 2.479560 GCTTCAACGAATATGGGGTTGC 60.480 50.000 0.00 0.00 40.53 4.17
1800 1827 2.049248 GCACGGACGGGTTTACGA 60.049 61.111 0.00 0.00 37.61 3.43
1810 1837 1.874739 CGGGTTTACGAAGCAGGTTCA 60.875 52.381 12.77 0.00 34.44 3.18
1824 1851 2.802816 CAGGTTCAGGTCAAACTCTTCG 59.197 50.000 0.00 0.00 0.00 3.79
1869 1896 0.968901 TCACCGGCTACGATCCTGTT 60.969 55.000 0.00 0.00 44.60 3.16
1899 1926 1.589993 CGATCAAGCGGACGCAGAT 60.590 57.895 19.48 19.46 44.88 2.90
1907 1934 1.439228 CGGACGCAGATGATGAGGT 59.561 57.895 0.00 0.00 32.12 3.85
1914 1941 1.929836 GCAGATGATGAGGTTGACGAC 59.070 52.381 0.00 0.00 0.00 4.34
2004 2031 2.486982 CGAGGAGGAAGACAACTACGAA 59.513 50.000 0.00 0.00 0.00 3.85
2010 2037 5.123805 AGGAAGACAACTACGAAGAAGAC 57.876 43.478 0.00 0.00 0.00 3.01
2054 2087 0.784778 GACAACTCTTGCGACGAAGG 59.215 55.000 0.00 0.00 0.00 3.46
2157 2190 0.755079 AGCAGATTAGGATGCAGCGA 59.245 50.000 0.00 0.00 45.01 4.93
2345 2378 7.487484 TCTCACAATTTGTTTGATAAAGCACA 58.513 30.769 0.00 0.00 38.76 4.57
2393 2608 4.559153 CAAAAGCATAACCACAAAGAGGG 58.441 43.478 0.00 0.00 0.00 4.30
2410 2625 2.628178 GAGGGGGAGTTTGAAAAGGTTG 59.372 50.000 0.00 0.00 0.00 3.77
2427 2642 5.774498 AGGTTGATTTTTGGTCTCTCAAC 57.226 39.130 5.41 5.41 43.01 3.18
2431 2646 7.671398 AGGTTGATTTTTGGTCTCTCAACATAT 59.329 33.333 13.72 0.00 44.64 1.78
2466 2681 7.148590 GCAGTTTTTGTCACTCAACTTCAAAAT 60.149 33.333 0.00 0.00 37.66 1.82
2469 2684 8.707839 GTTTTTGTCACTCAACTTCAAAATCAA 58.292 29.630 0.00 0.00 37.66 2.57
2523 2738 2.828520 TGCACCTGAACTTTTCAAACCA 59.171 40.909 0.00 0.00 39.58 3.67
2530 2745 5.105756 CCTGAACTTTTCAAACCAGACAAGT 60.106 40.000 0.00 0.00 39.49 3.16
2537 2752 3.436700 CAAACCAGACAAGTTTGGTCC 57.563 47.619 14.84 0.00 45.99 4.46
2538 2753 3.023832 CAAACCAGACAAGTTTGGTCCT 58.976 45.455 14.84 4.23 45.99 3.85
2552 2767 2.842320 GTCCTTCGACCCTGCTTTC 58.158 57.895 0.00 0.00 32.40 2.62
2565 2780 3.507233 CCCTGCTTTCAATGCTAACTCAA 59.493 43.478 0.00 0.00 0.00 3.02
2574 2789 5.771469 TCAATGCTAACTCAATGTGGTTTG 58.229 37.500 0.90 1.15 0.00 2.93
2595 2810 1.206578 CCAATTGTCGTCCACGTGC 59.793 57.895 10.91 0.00 40.80 5.34
2613 2828 3.209410 GTGCCAATGTATCTCTTCCCTG 58.791 50.000 0.00 0.00 0.00 4.45
2618 2833 4.378774 CAATGTATCTCTTCCCTGCTCAG 58.621 47.826 0.00 0.00 0.00 3.35
2672 2888 1.173043 CATTTTGCGGGCTGGAACTA 58.827 50.000 0.00 0.00 0.00 2.24
2709 2925 4.783621 GATGGAGGCAGCGCACCA 62.784 66.667 20.11 15.38 39.67 4.17
2725 2941 2.223112 GCACCATTGTGACATCGATGAC 60.223 50.000 31.33 24.86 45.76 3.06
2766 2982 6.111382 CCTAGTACGGTGGAGATTCGATATA 58.889 44.000 0.00 0.00 0.00 0.86
2881 3097 2.308570 AGATGAGTATTGGTGTTGGGCA 59.691 45.455 0.00 0.00 0.00 5.36
2937 3153 0.323629 CTAACAAGGTGGCTTCGGGA 59.676 55.000 0.00 0.00 0.00 5.14
2938 3154 0.988832 TAACAAGGTGGCTTCGGGAT 59.011 50.000 0.00 0.00 0.00 3.85
2974 3190 8.430801 CTCTTAAGAGAAGTATTGGATGTTGG 57.569 38.462 25.55 0.00 44.74 3.77
2975 3191 8.146053 TCTTAAGAGAAGTATTGGATGTTGGA 57.854 34.615 0.00 0.00 0.00 3.53
2976 3192 8.602424 TCTTAAGAGAAGTATTGGATGTTGGAA 58.398 33.333 0.00 0.00 0.00 3.53
2977 3193 9.231297 CTTAAGAGAAGTATTGGATGTTGGAAA 57.769 33.333 0.00 0.00 0.00 3.13
2978 3194 9.753674 TTAAGAGAAGTATTGGATGTTGGAAAT 57.246 29.630 0.00 0.00 0.00 2.17
2980 3196 9.927081 AAGAGAAGTATTGGATGTTGGAAATAT 57.073 29.630 0.00 0.00 0.00 1.28
2981 3197 9.347240 AGAGAAGTATTGGATGTTGGAAATATG 57.653 33.333 0.00 0.00 0.00 1.78
2982 3198 7.945134 AGAAGTATTGGATGTTGGAAATATGC 58.055 34.615 0.00 0.00 36.35 3.14
2983 3199 6.655078 AGTATTGGATGTTGGAAATATGCC 57.345 37.500 0.00 0.00 34.96 4.40
2984 3200 4.961438 ATTGGATGTTGGAAATATGCCC 57.039 40.909 0.00 0.00 34.96 5.36
2985 3201 3.686227 TGGATGTTGGAAATATGCCCT 57.314 42.857 0.00 0.00 34.96 5.19
2986 3202 4.805140 TGGATGTTGGAAATATGCCCTA 57.195 40.909 0.00 0.00 34.96 3.53
2987 3203 4.728772 TGGATGTTGGAAATATGCCCTAG 58.271 43.478 0.00 0.00 34.96 3.02
2988 3204 4.415179 TGGATGTTGGAAATATGCCCTAGA 59.585 41.667 0.00 0.00 34.96 2.43
2989 3205 5.006386 GGATGTTGGAAATATGCCCTAGAG 58.994 45.833 0.00 0.00 29.72 2.43
2990 3206 4.437682 TGTTGGAAATATGCCCTAGAGG 57.562 45.455 0.00 0.00 39.47 3.69
3083 3299 6.677781 ATTAACCGGAAACAGTGATACATG 57.322 37.500 9.46 0.00 0.00 3.21
3084 3300 3.695830 ACCGGAAACAGTGATACATGT 57.304 42.857 9.46 2.69 0.00 3.21
3085 3301 3.334691 ACCGGAAACAGTGATACATGTG 58.665 45.455 9.46 0.00 0.00 3.21
3086 3302 3.244422 ACCGGAAACAGTGATACATGTGT 60.244 43.478 9.46 0.10 0.00 3.72
3087 3303 3.125146 CCGGAAACAGTGATACATGTGTG 59.875 47.826 9.11 0.73 0.00 3.82
3088 3304 3.993736 CGGAAACAGTGATACATGTGTGA 59.006 43.478 9.11 0.00 0.00 3.58
3089 3305 4.450757 CGGAAACAGTGATACATGTGTGAA 59.549 41.667 9.11 0.00 0.00 3.18
3090 3306 5.122239 CGGAAACAGTGATACATGTGTGAAT 59.878 40.000 9.11 0.00 0.00 2.57
3091 3307 6.312672 CGGAAACAGTGATACATGTGTGAATA 59.687 38.462 9.11 0.00 0.00 1.75
3092 3308 7.464358 GGAAACAGTGATACATGTGTGAATAC 58.536 38.462 9.11 0.00 0.00 1.89
3093 3309 7.119116 GGAAACAGTGATACATGTGTGAATACA 59.881 37.037 9.11 0.00 34.63 2.29
3094 3310 8.565896 AAACAGTGATACATGTGTGAATACAT 57.434 30.769 9.11 0.00 41.77 2.29
3095 3311 9.665719 AAACAGTGATACATGTGTGAATACATA 57.334 29.630 9.11 0.00 39.17 2.29
3096 3312 8.877808 ACAGTGATACATGTGTGAATACATAG 57.122 34.615 9.11 0.00 39.17 2.23
3097 3313 8.695456 ACAGTGATACATGTGTGAATACATAGA 58.305 33.333 9.11 0.00 39.17 1.98
3098 3314 8.972349 CAGTGATACATGTGTGAATACATAGAC 58.028 37.037 9.11 0.00 39.17 2.59
3099 3315 8.144478 AGTGATACATGTGTGAATACATAGACC 58.856 37.037 9.11 0.00 39.17 3.85
3100 3316 7.926018 GTGATACATGTGTGAATACATAGACCA 59.074 37.037 9.11 0.00 39.17 4.02
3101 3317 7.926018 TGATACATGTGTGAATACATAGACCAC 59.074 37.037 9.11 0.00 39.17 4.16
3102 3318 6.048732 ACATGTGTGAATACATAGACCACA 57.951 37.500 0.00 0.00 39.17 4.17
3103 3319 6.472016 ACATGTGTGAATACATAGACCACAA 58.528 36.000 0.00 0.00 39.17 3.33
3104 3320 6.371548 ACATGTGTGAATACATAGACCACAAC 59.628 38.462 0.00 0.00 39.17 3.32
3105 3321 5.859495 TGTGTGAATACATAGACCACAACA 58.141 37.500 0.00 0.00 39.13 3.33
3106 3322 6.472016 TGTGTGAATACATAGACCACAACAT 58.528 36.000 0.00 0.00 39.13 2.71
3107 3323 6.371271 TGTGTGAATACATAGACCACAACATG 59.629 38.462 0.00 0.00 39.13 3.21
3108 3324 6.371548 GTGTGAATACATAGACCACAACATGT 59.628 38.462 0.00 0.00 39.13 3.21
3109 3325 6.593770 TGTGAATACATAGACCACAACATGTC 59.406 38.462 0.00 0.00 35.16 3.06
3110 3326 6.037172 GTGAATACATAGACCACAACATGTCC 59.963 42.308 0.00 0.00 33.78 4.02
3111 3327 3.350219 ACATAGACCACAACATGTCCC 57.650 47.619 0.00 0.00 31.76 4.46
3112 3328 2.912956 ACATAGACCACAACATGTCCCT 59.087 45.455 0.00 0.00 31.76 4.20
3113 3329 4.101114 ACATAGACCACAACATGTCCCTA 58.899 43.478 0.00 0.00 31.76 3.53
3114 3330 4.162320 ACATAGACCACAACATGTCCCTAG 59.838 45.833 0.00 0.00 31.76 3.02
3115 3331 2.621070 AGACCACAACATGTCCCTAGT 58.379 47.619 0.00 0.00 31.76 2.57
3116 3332 2.303022 AGACCACAACATGTCCCTAGTG 59.697 50.000 0.00 3.77 31.76 2.74
3117 3333 2.301870 GACCACAACATGTCCCTAGTGA 59.698 50.000 0.00 0.00 0.00 3.41
3118 3334 2.303022 ACCACAACATGTCCCTAGTGAG 59.697 50.000 0.00 0.00 0.00 3.51
3119 3335 2.350522 CACAACATGTCCCTAGTGAGC 58.649 52.381 0.00 0.00 0.00 4.26
3120 3336 1.279271 ACAACATGTCCCTAGTGAGCC 59.721 52.381 0.00 0.00 0.00 4.70
3121 3337 1.556911 CAACATGTCCCTAGTGAGCCT 59.443 52.381 0.00 0.00 0.00 4.58
3122 3338 1.490574 ACATGTCCCTAGTGAGCCTC 58.509 55.000 0.00 0.00 0.00 4.70
3123 3339 1.007721 ACATGTCCCTAGTGAGCCTCT 59.992 52.381 0.00 0.00 0.00 3.69
3124 3340 2.245028 ACATGTCCCTAGTGAGCCTCTA 59.755 50.000 0.00 0.00 0.00 2.43
3125 3341 2.738587 TGTCCCTAGTGAGCCTCTAG 57.261 55.000 0.00 0.00 35.86 2.43
3126 3342 1.923850 TGTCCCTAGTGAGCCTCTAGT 59.076 52.381 0.00 0.00 34.72 2.57
3127 3343 2.312140 TGTCCCTAGTGAGCCTCTAGTT 59.688 50.000 0.00 0.00 34.72 2.24
3128 3344 2.691011 GTCCCTAGTGAGCCTCTAGTTG 59.309 54.545 0.00 3.20 34.72 3.16
3129 3345 2.581246 TCCCTAGTGAGCCTCTAGTTGA 59.419 50.000 0.00 4.76 34.72 3.18
3130 3346 2.691011 CCCTAGTGAGCCTCTAGTTGAC 59.309 54.545 0.00 0.00 34.72 3.18
3131 3347 3.626222 CCCTAGTGAGCCTCTAGTTGACT 60.626 52.174 0.00 0.00 34.72 3.41
3132 3348 4.385421 CCCTAGTGAGCCTCTAGTTGACTA 60.385 50.000 0.00 0.00 34.72 2.59
3133 3349 4.819630 CCTAGTGAGCCTCTAGTTGACTAG 59.180 50.000 11.14 11.14 45.57 2.57
3134 3350 3.020984 AGTGAGCCTCTAGTTGACTAGC 58.979 50.000 12.30 3.61 44.24 3.42
3135 3351 3.020984 GTGAGCCTCTAGTTGACTAGCT 58.979 50.000 12.30 7.92 44.24 3.32
3136 3352 3.066203 GTGAGCCTCTAGTTGACTAGCTC 59.934 52.174 17.34 17.34 44.24 4.09
3137 3353 2.289547 GAGCCTCTAGTTGACTAGCTCG 59.710 54.545 12.30 0.00 44.24 5.03
3138 3354 2.018515 GCCTCTAGTTGACTAGCTCGT 58.981 52.381 12.30 0.00 44.24 4.18
3139 3355 2.424246 GCCTCTAGTTGACTAGCTCGTT 59.576 50.000 12.30 0.00 44.24 3.85
3140 3356 3.732471 GCCTCTAGTTGACTAGCTCGTTG 60.732 52.174 12.30 0.75 44.24 4.10
3141 3357 3.690139 CCTCTAGTTGACTAGCTCGTTGA 59.310 47.826 12.30 0.00 44.24 3.18
3142 3358 4.336993 CCTCTAGTTGACTAGCTCGTTGAT 59.663 45.833 12.30 0.00 44.24 2.57
3143 3359 5.487153 TCTAGTTGACTAGCTCGTTGATC 57.513 43.478 12.30 0.00 44.24 2.92
3144 3360 4.941873 TCTAGTTGACTAGCTCGTTGATCA 59.058 41.667 12.30 0.00 44.24 2.92
3145 3361 4.521130 AGTTGACTAGCTCGTTGATCAA 57.479 40.909 3.38 3.38 0.00 2.57
3146 3362 4.238514 AGTTGACTAGCTCGTTGATCAAC 58.761 43.478 25.68 25.68 43.94 3.18
3147 3363 3.934457 TGACTAGCTCGTTGATCAACA 57.066 42.857 32.06 20.24 41.20 3.33
3148 3364 3.838120 TGACTAGCTCGTTGATCAACAG 58.162 45.455 32.06 26.93 41.20 3.16
3149 3365 3.182967 GACTAGCTCGTTGATCAACAGG 58.817 50.000 32.06 24.54 41.20 4.00
3150 3366 2.563179 ACTAGCTCGTTGATCAACAGGT 59.437 45.455 32.06 30.09 41.20 4.00
3151 3367 3.762288 ACTAGCTCGTTGATCAACAGGTA 59.238 43.478 32.06 29.74 41.20 3.08
3152 3368 3.238108 AGCTCGTTGATCAACAGGTAG 57.762 47.619 32.06 23.64 41.20 3.18
3153 3369 2.563179 AGCTCGTTGATCAACAGGTAGT 59.437 45.455 32.06 12.81 41.20 2.73
3154 3370 2.924290 GCTCGTTGATCAACAGGTAGTC 59.076 50.000 32.06 17.01 41.20 2.59
3155 3371 3.614150 GCTCGTTGATCAACAGGTAGTCA 60.614 47.826 32.06 11.38 41.20 3.41
3156 3372 4.748892 CTCGTTGATCAACAGGTAGTCAT 58.251 43.478 32.06 0.00 41.20 3.06
3157 3373 4.494484 TCGTTGATCAACAGGTAGTCATG 58.506 43.478 32.06 15.48 41.20 3.07
3158 3374 3.618594 CGTTGATCAACAGGTAGTCATGG 59.381 47.826 32.06 12.08 41.20 3.66
3159 3375 4.579869 GTTGATCAACAGGTAGTCATGGT 58.420 43.478 29.43 0.00 40.84 3.55
3160 3376 4.908601 TGATCAACAGGTAGTCATGGTT 57.091 40.909 0.00 0.00 0.00 3.67
3161 3377 5.241403 TGATCAACAGGTAGTCATGGTTT 57.759 39.130 0.00 0.00 0.00 3.27
3162 3378 5.245531 TGATCAACAGGTAGTCATGGTTTC 58.754 41.667 0.00 0.00 0.00 2.78
3163 3379 4.015872 TCAACAGGTAGTCATGGTTTCC 57.984 45.455 0.00 0.00 0.00 3.13
3164 3380 3.650942 TCAACAGGTAGTCATGGTTTCCT 59.349 43.478 0.00 0.00 0.00 3.36
3165 3381 3.703001 ACAGGTAGTCATGGTTTCCTG 57.297 47.619 18.84 18.84 45.24 3.86
3166 3382 3.248024 ACAGGTAGTCATGGTTTCCTGA 58.752 45.455 23.77 0.00 43.28 3.86
3167 3383 3.008049 ACAGGTAGTCATGGTTTCCTGAC 59.992 47.826 23.77 3.46 43.28 3.51
3173 3389 4.487714 GTCATGGTTTCCTGACTATGGA 57.512 45.455 0.00 0.00 38.56 3.41
3174 3390 4.192317 GTCATGGTTTCCTGACTATGGAC 58.808 47.826 0.00 0.00 38.56 4.02
3175 3391 3.843619 TCATGGTTTCCTGACTATGGACA 59.156 43.478 0.00 0.00 38.56 4.02
3176 3392 4.474651 TCATGGTTTCCTGACTATGGACAT 59.525 41.667 0.00 0.00 38.56 3.06
3177 3393 4.927267 TGGTTTCCTGACTATGGACATT 57.073 40.909 0.00 0.00 32.65 2.71
3178 3394 4.588899 TGGTTTCCTGACTATGGACATTG 58.411 43.478 0.00 0.00 32.65 2.82
3179 3395 3.947834 GGTTTCCTGACTATGGACATTGG 59.052 47.826 0.00 0.00 32.65 3.16
3180 3396 4.324254 GGTTTCCTGACTATGGACATTGGA 60.324 45.833 0.00 0.00 32.65 3.53
3181 3397 5.440610 GTTTCCTGACTATGGACATTGGAT 58.559 41.667 0.00 0.00 32.65 3.41
3182 3398 4.694760 TCCTGACTATGGACATTGGATG 57.305 45.455 0.00 0.00 0.00 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 9.869844 CGATGGAAACTGAAATATTTAAGCTAG 57.130 33.333 11.92 4.10 0.00 3.42
23 24 8.342634 GCGATGGAAACTGAAATATTTAAGCTA 58.657 33.333 11.92 0.00 0.00 3.32
24 25 7.196331 GCGATGGAAACTGAAATATTTAAGCT 58.804 34.615 11.92 0.00 0.00 3.74
25 26 6.417930 GGCGATGGAAACTGAAATATTTAAGC 59.582 38.462 11.92 0.00 0.00 3.09
26 27 7.479980 TGGCGATGGAAACTGAAATATTTAAG 58.520 34.615 10.60 10.60 0.00 1.85
27 28 7.397892 TGGCGATGGAAACTGAAATATTTAA 57.602 32.000 0.00 0.00 0.00 1.52
28 29 7.397892 TTGGCGATGGAAACTGAAATATTTA 57.602 32.000 0.00 0.00 0.00 1.40
29 30 5.913137 TGGCGATGGAAACTGAAATATTT 57.087 34.783 0.00 0.00 0.00 1.40
30 31 5.913137 TTGGCGATGGAAACTGAAATATT 57.087 34.783 0.00 0.00 0.00 1.28
31 32 5.593909 TCATTGGCGATGGAAACTGAAATAT 59.406 36.000 14.66 0.00 36.37 1.28
32 33 4.946772 TCATTGGCGATGGAAACTGAAATA 59.053 37.500 14.66 0.00 36.37 1.40
33 34 3.763360 TCATTGGCGATGGAAACTGAAAT 59.237 39.130 14.66 0.00 36.37 2.17
34 35 3.153130 TCATTGGCGATGGAAACTGAAA 58.847 40.909 14.66 0.00 36.37 2.69
35 36 2.789213 TCATTGGCGATGGAAACTGAA 58.211 42.857 14.66 0.00 36.37 3.02
36 37 2.487762 GTTCATTGGCGATGGAAACTGA 59.512 45.455 14.66 0.00 36.37 3.41
37 38 2.415893 GGTTCATTGGCGATGGAAACTG 60.416 50.000 14.66 0.00 36.37 3.16
38 39 1.818674 GGTTCATTGGCGATGGAAACT 59.181 47.619 14.66 0.00 36.37 2.66
39 40 1.543802 TGGTTCATTGGCGATGGAAAC 59.456 47.619 14.66 11.83 36.37 2.78
40 41 1.818060 CTGGTTCATTGGCGATGGAAA 59.182 47.619 14.66 0.00 36.37 3.13
41 42 1.462616 CTGGTTCATTGGCGATGGAA 58.537 50.000 14.66 5.38 36.37 3.53
42 43 1.031571 GCTGGTTCATTGGCGATGGA 61.032 55.000 14.66 2.81 36.37 3.41
43 44 1.033746 AGCTGGTTCATTGGCGATGG 61.034 55.000 14.66 0.00 36.37 3.51
44 45 0.099968 CAGCTGGTTCATTGGCGATG 59.900 55.000 5.57 8.51 37.08 3.84
45 46 0.035152 TCAGCTGGTTCATTGGCGAT 60.035 50.000 15.13 0.00 0.00 4.58
46 47 0.674581 CTCAGCTGGTTCATTGGCGA 60.675 55.000 15.13 0.00 0.00 5.54
47 48 0.957395 ACTCAGCTGGTTCATTGGCG 60.957 55.000 15.13 0.00 0.00 5.69
48 49 0.807496 GACTCAGCTGGTTCATTGGC 59.193 55.000 15.13 0.00 0.00 4.52
49 50 2.189594 TGACTCAGCTGGTTCATTGG 57.810 50.000 15.13 0.00 0.00 3.16
50 51 2.350804 CGATGACTCAGCTGGTTCATTG 59.649 50.000 23.67 22.64 0.00 2.82
51 52 2.625737 CGATGACTCAGCTGGTTCATT 58.374 47.619 23.67 12.92 0.00 2.57
52 53 1.134580 CCGATGACTCAGCTGGTTCAT 60.135 52.381 23.28 23.28 0.00 2.57
53 54 0.247460 CCGATGACTCAGCTGGTTCA 59.753 55.000 15.13 16.43 0.00 3.18
54 55 0.247736 ACCGATGACTCAGCTGGTTC 59.752 55.000 15.13 11.03 0.00 3.62
55 56 0.247736 GACCGATGACTCAGCTGGTT 59.752 55.000 15.13 0.00 30.17 3.67
56 57 1.608717 GGACCGATGACTCAGCTGGT 61.609 60.000 15.13 10.81 31.89 4.00
57 58 1.142748 GGACCGATGACTCAGCTGG 59.857 63.158 15.13 7.28 0.00 4.85
58 59 1.226802 CGGACCGATGACTCAGCTG 60.227 63.158 8.64 7.63 0.00 4.24
59 60 1.378646 TCGGACCGATGACTCAGCT 60.379 57.895 13.88 0.00 0.00 4.24
60 61 1.226717 GTCGGACCGATGACTCAGC 60.227 63.158 21.53 0.00 38.42 4.26
61 62 0.099613 CAGTCGGACCGATGACTCAG 59.900 60.000 21.53 0.00 43.33 3.35
62 63 0.322187 TCAGTCGGACCGATGACTCA 60.322 55.000 21.53 0.00 43.33 3.41
63 64 1.025812 ATCAGTCGGACCGATGACTC 58.974 55.000 21.53 6.60 43.33 3.36
64 65 0.741326 CATCAGTCGGACCGATGACT 59.259 55.000 23.69 10.55 45.98 3.41
65 66 0.738975 TCATCAGTCGGACCGATGAC 59.261 55.000 25.64 8.07 40.37 3.06
66 67 1.470051 TTCATCAGTCGGACCGATGA 58.530 50.000 25.64 25.64 42.80 2.92
67 68 2.293677 TTTCATCAGTCGGACCGATG 57.706 50.000 21.53 22.57 38.42 3.84
68 69 3.133003 AGATTTTCATCAGTCGGACCGAT 59.867 43.478 21.53 6.43 38.42 4.18
69 70 2.496070 AGATTTTCATCAGTCGGACCGA 59.504 45.455 13.88 13.88 0.00 4.69
70 71 2.604914 CAGATTTTCATCAGTCGGACCG 59.395 50.000 7.84 7.84 0.00 4.79
71 72 3.861840 TCAGATTTTCATCAGTCGGACC 58.138 45.455 4.14 0.00 0.00 4.46
72 73 4.201628 CGTTCAGATTTTCATCAGTCGGAC 60.202 45.833 0.00 0.00 0.00 4.79
73 74 3.926527 CGTTCAGATTTTCATCAGTCGGA 59.073 43.478 0.00 0.00 0.00 4.55
74 75 3.926527 TCGTTCAGATTTTCATCAGTCGG 59.073 43.478 0.00 0.00 0.00 4.79
75 76 4.385748 TGTCGTTCAGATTTTCATCAGTCG 59.614 41.667 0.00 0.00 0.00 4.18
76 77 5.845985 TGTCGTTCAGATTTTCATCAGTC 57.154 39.130 0.00 0.00 0.00 3.51
77 78 6.348786 CCATTGTCGTTCAGATTTTCATCAGT 60.349 38.462 0.00 0.00 0.00 3.41
78 79 6.025896 CCATTGTCGTTCAGATTTTCATCAG 58.974 40.000 0.00 0.00 0.00 2.90
79 80 5.619757 GCCATTGTCGTTCAGATTTTCATCA 60.620 40.000 0.00 0.00 0.00 3.07
80 81 4.795278 GCCATTGTCGTTCAGATTTTCATC 59.205 41.667 0.00 0.00 0.00 2.92
81 82 4.672542 CGCCATTGTCGTTCAGATTTTCAT 60.673 41.667 0.00 0.00 0.00 2.57
82 83 3.364864 CGCCATTGTCGTTCAGATTTTCA 60.365 43.478 0.00 0.00 0.00 2.69
83 84 3.120338 TCGCCATTGTCGTTCAGATTTTC 60.120 43.478 0.00 0.00 0.00 2.29
84 85 2.811431 TCGCCATTGTCGTTCAGATTTT 59.189 40.909 0.00 0.00 0.00 1.82
85 86 2.422597 TCGCCATTGTCGTTCAGATTT 58.577 42.857 0.00 0.00 0.00 2.17
86 87 2.093306 TCGCCATTGTCGTTCAGATT 57.907 45.000 0.00 0.00 0.00 2.40
87 88 1.732259 GTTCGCCATTGTCGTTCAGAT 59.268 47.619 0.00 0.00 0.00 2.90
88 89 1.144969 GTTCGCCATTGTCGTTCAGA 58.855 50.000 0.00 0.00 0.00 3.27
89 90 0.179250 CGTTCGCCATTGTCGTTCAG 60.179 55.000 0.00 0.00 0.00 3.02
90 91 0.876777 ACGTTCGCCATTGTCGTTCA 60.877 50.000 0.00 0.00 0.00 3.18
91 92 1.058695 CTACGTTCGCCATTGTCGTTC 59.941 52.381 0.00 0.00 36.24 3.95
92 93 1.065358 CTACGTTCGCCATTGTCGTT 58.935 50.000 0.00 0.00 36.24 3.85
93 94 0.734942 CCTACGTTCGCCATTGTCGT 60.735 55.000 0.00 0.00 38.30 4.34
94 95 0.457166 TCCTACGTTCGCCATTGTCG 60.457 55.000 0.00 0.00 0.00 4.35
95 96 1.859080 GATCCTACGTTCGCCATTGTC 59.141 52.381 0.00 0.00 0.00 3.18
96 97 1.480954 AGATCCTACGTTCGCCATTGT 59.519 47.619 0.00 0.00 0.00 2.71
97 98 2.128035 GAGATCCTACGTTCGCCATTG 58.872 52.381 0.00 0.00 0.00 2.82
98 99 1.754803 TGAGATCCTACGTTCGCCATT 59.245 47.619 0.00 0.00 0.00 3.16
99 100 1.399714 TGAGATCCTACGTTCGCCAT 58.600 50.000 0.00 0.00 0.00 4.40
100 101 1.135199 GTTGAGATCCTACGTTCGCCA 60.135 52.381 0.00 0.00 0.00 5.69
101 102 1.135199 TGTTGAGATCCTACGTTCGCC 60.135 52.381 0.00 0.00 0.00 5.54
102 103 1.918609 GTGTTGAGATCCTACGTTCGC 59.081 52.381 0.00 0.00 0.00 4.70
103 104 3.119955 TCAGTGTTGAGATCCTACGTTCG 60.120 47.826 0.00 0.00 0.00 3.95
104 105 4.436242 TCAGTGTTGAGATCCTACGTTC 57.564 45.455 0.00 0.00 0.00 3.95
116 117 1.053424 GTGGTACCCCTCAGTGTTGA 58.947 55.000 10.07 0.00 0.00 3.18
117 118 0.320421 CGTGGTACCCCTCAGTGTTG 60.320 60.000 10.07 0.00 0.00 3.33
118 119 1.477685 CCGTGGTACCCCTCAGTGTT 61.478 60.000 10.07 0.00 0.00 3.32
119 120 1.911766 CCGTGGTACCCCTCAGTGT 60.912 63.158 10.07 0.00 0.00 3.55
120 121 1.477685 AACCGTGGTACCCCTCAGTG 61.478 60.000 10.07 0.00 0.00 3.66
121 122 0.765519 AAACCGTGGTACCCCTCAGT 60.766 55.000 10.07 0.00 0.00 3.41
122 123 1.269012 TAAACCGTGGTACCCCTCAG 58.731 55.000 10.07 0.00 0.00 3.35
123 124 1.727062 TTAAACCGTGGTACCCCTCA 58.273 50.000 10.07 0.00 0.00 3.86
124 125 2.857186 TTTAAACCGTGGTACCCCTC 57.143 50.000 10.07 0.00 0.00 4.30
125 126 3.812611 ATTTTAAACCGTGGTACCCCT 57.187 42.857 10.07 0.00 0.00 4.79
126 127 4.039004 ACAAATTTTAAACCGTGGTACCCC 59.961 41.667 10.07 0.00 0.00 4.95
127 128 4.983538 CACAAATTTTAAACCGTGGTACCC 59.016 41.667 10.07 0.00 0.00 3.69
128 129 5.829829 TCACAAATTTTAAACCGTGGTACC 58.170 37.500 4.43 4.43 0.00 3.34
129 130 7.752557 TTTCACAAATTTTAAACCGTGGTAC 57.247 32.000 0.00 0.00 0.00 3.34
130 131 8.943909 ATTTTCACAAATTTTAAACCGTGGTA 57.056 26.923 0.00 0.00 0.00 3.25
131 132 7.851387 ATTTTCACAAATTTTAAACCGTGGT 57.149 28.000 4.75 0.00 0.00 4.16
190 191 9.928618 TGGGATTATTTGTTGGAACTATGATTA 57.071 29.630 0.00 0.00 0.00 1.75
191 192 8.837099 TGGGATTATTTGTTGGAACTATGATT 57.163 30.769 0.00 0.00 0.00 2.57
192 193 8.837099 TTGGGATTATTTGTTGGAACTATGAT 57.163 30.769 0.00 0.00 0.00 2.45
193 194 8.657387 TTTGGGATTATTTGTTGGAACTATGA 57.343 30.769 0.00 0.00 0.00 2.15
194 195 9.717942 TTTTTGGGATTATTTGTTGGAACTATG 57.282 29.630 0.00 0.00 0.00 2.23
195 196 9.942850 CTTTTTGGGATTATTTGTTGGAACTAT 57.057 29.630 0.00 0.00 0.00 2.12
196 197 7.875554 GCTTTTTGGGATTATTTGTTGGAACTA 59.124 33.333 0.00 0.00 0.00 2.24
197 198 6.710295 GCTTTTTGGGATTATTTGTTGGAACT 59.290 34.615 0.00 0.00 0.00 3.01
198 199 6.484977 TGCTTTTTGGGATTATTTGTTGGAAC 59.515 34.615 0.00 0.00 0.00 3.62
199 200 6.595682 TGCTTTTTGGGATTATTTGTTGGAA 58.404 32.000 0.00 0.00 0.00 3.53
200 201 6.179906 TGCTTTTTGGGATTATTTGTTGGA 57.820 33.333 0.00 0.00 0.00 3.53
201 202 7.451501 AATGCTTTTTGGGATTATTTGTTGG 57.548 32.000 0.00 0.00 0.00 3.77
202 203 8.997323 TGTAATGCTTTTTGGGATTATTTGTTG 58.003 29.630 0.00 0.00 33.44 3.33
203 204 9.737844 ATGTAATGCTTTTTGGGATTATTTGTT 57.262 25.926 0.00 0.00 33.44 2.83
204 205 9.737844 AATGTAATGCTTTTTGGGATTATTTGT 57.262 25.926 0.00 0.00 33.44 2.83
205 206 9.991388 CAATGTAATGCTTTTTGGGATTATTTG 57.009 29.630 0.00 0.00 33.44 2.32
206 207 9.737844 ACAATGTAATGCTTTTTGGGATTATTT 57.262 25.926 0.00 0.00 33.44 1.40
207 208 9.737844 AACAATGTAATGCTTTTTGGGATTATT 57.262 25.926 0.00 0.00 33.44 1.40
208 209 9.165035 CAACAATGTAATGCTTTTTGGGATTAT 57.835 29.630 0.00 0.00 33.44 1.28
209 210 7.605691 CCAACAATGTAATGCTTTTTGGGATTA 59.394 33.333 0.00 0.00 30.58 1.75
210 211 6.430616 CCAACAATGTAATGCTTTTTGGGATT 59.569 34.615 0.00 0.00 30.58 3.01
211 212 5.939296 CCAACAATGTAATGCTTTTTGGGAT 59.061 36.000 0.00 0.00 30.58 3.85
212 213 5.070981 TCCAACAATGTAATGCTTTTTGGGA 59.929 36.000 9.91 0.00 34.28 4.37
213 214 5.303971 TCCAACAATGTAATGCTTTTTGGG 58.696 37.500 9.91 0.00 34.28 4.12
214 215 8.545229 TTATCCAACAATGTAATGCTTTTTGG 57.455 30.769 5.33 5.33 34.72 3.28
215 216 9.206870 ACTTATCCAACAATGTAATGCTTTTTG 57.793 29.630 0.00 0.00 0.00 2.44
218 219 8.686334 CCTACTTATCCAACAATGTAATGCTTT 58.314 33.333 0.00 0.00 0.00 3.51
219 220 7.834181 ACCTACTTATCCAACAATGTAATGCTT 59.166 33.333 0.00 0.00 0.00 3.91
220 221 7.346471 ACCTACTTATCCAACAATGTAATGCT 58.654 34.615 0.00 0.00 0.00 3.79
221 222 7.568199 ACCTACTTATCCAACAATGTAATGC 57.432 36.000 0.00 0.00 0.00 3.56
222 223 9.173021 TGAACCTACTTATCCAACAATGTAATG 57.827 33.333 0.00 0.00 0.00 1.90
223 224 9.747898 TTGAACCTACTTATCCAACAATGTAAT 57.252 29.630 0.00 0.00 0.00 1.89
224 225 9.747898 ATTGAACCTACTTATCCAACAATGTAA 57.252 29.630 0.00 0.00 0.00 2.41
226 227 9.174166 GTATTGAACCTACTTATCCAACAATGT 57.826 33.333 0.00 0.00 0.00 2.71
227 228 9.173021 TGTATTGAACCTACTTATCCAACAATG 57.827 33.333 0.00 0.00 0.00 2.82
228 229 9.920946 ATGTATTGAACCTACTTATCCAACAAT 57.079 29.630 0.00 0.00 0.00 2.71
229 230 9.747898 AATGTATTGAACCTACTTATCCAACAA 57.252 29.630 0.00 0.00 0.00 2.83
271 272 5.752955 GTGAGGCTGTCTAAAAATGCAAAAA 59.247 36.000 0.00 0.00 0.00 1.94
272 273 5.068987 AGTGAGGCTGTCTAAAAATGCAAAA 59.931 36.000 0.00 0.00 0.00 2.44
273 274 4.584325 AGTGAGGCTGTCTAAAAATGCAAA 59.416 37.500 0.00 0.00 0.00 3.68
274 275 4.022935 CAGTGAGGCTGTCTAAAAATGCAA 60.023 41.667 0.00 0.00 40.27 4.08
275 276 3.503363 CAGTGAGGCTGTCTAAAAATGCA 59.497 43.478 0.00 0.00 40.27 3.96
276 277 3.753272 TCAGTGAGGCTGTCTAAAAATGC 59.247 43.478 0.00 0.00 45.23 3.56
277 278 6.506500 AATCAGTGAGGCTGTCTAAAAATG 57.493 37.500 0.00 0.00 45.23 2.32
278 279 5.352569 CGAATCAGTGAGGCTGTCTAAAAAT 59.647 40.000 0.00 0.00 45.23 1.82
279 280 4.690748 CGAATCAGTGAGGCTGTCTAAAAA 59.309 41.667 0.00 0.00 45.23 1.94
280 281 4.245660 CGAATCAGTGAGGCTGTCTAAAA 58.754 43.478 0.00 0.00 45.23 1.52
281 282 3.368427 CCGAATCAGTGAGGCTGTCTAAA 60.368 47.826 0.00 0.00 45.23 1.85
282 283 2.166459 CCGAATCAGTGAGGCTGTCTAA 59.834 50.000 0.00 0.00 45.23 2.10
283 284 1.751351 CCGAATCAGTGAGGCTGTCTA 59.249 52.381 0.00 0.00 45.23 2.59
284 285 0.534412 CCGAATCAGTGAGGCTGTCT 59.466 55.000 0.00 0.00 45.23 3.41
285 286 0.247736 ACCGAATCAGTGAGGCTGTC 59.752 55.000 0.00 0.00 45.23 3.51
286 287 0.687354 AACCGAATCAGTGAGGCTGT 59.313 50.000 0.00 0.00 45.23 4.40
287 288 1.081892 CAACCGAATCAGTGAGGCTG 58.918 55.000 0.00 0.00 46.34 4.85
288 289 0.674895 GCAACCGAATCAGTGAGGCT 60.675 55.000 0.00 0.00 0.00 4.58
289 290 0.674895 AGCAACCGAATCAGTGAGGC 60.675 55.000 0.00 0.00 0.00 4.70
290 291 1.813513 AAGCAACCGAATCAGTGAGG 58.186 50.000 0.00 0.00 0.00 3.86
291 292 5.356882 TTTAAAGCAACCGAATCAGTGAG 57.643 39.130 0.00 0.00 0.00 3.51
292 293 5.298276 AGTTTTAAAGCAACCGAATCAGTGA 59.702 36.000 4.79 0.00 0.00 3.41
293 294 5.519722 AGTTTTAAAGCAACCGAATCAGTG 58.480 37.500 4.79 0.00 0.00 3.66
294 295 5.767816 AGTTTTAAAGCAACCGAATCAGT 57.232 34.783 4.79 0.00 0.00 3.41
295 296 6.251376 GCATAGTTTTAAAGCAACCGAATCAG 59.749 38.462 4.79 0.00 0.00 2.90
296 297 6.090129 GCATAGTTTTAAAGCAACCGAATCA 58.910 36.000 4.79 0.00 0.00 2.57
297 298 5.227184 CGCATAGTTTTAAAGCAACCGAATC 59.773 40.000 4.79 0.00 0.00 2.52
298 299 5.092781 CGCATAGTTTTAAAGCAACCGAAT 58.907 37.500 4.79 0.00 0.00 3.34
299 300 4.468643 CGCATAGTTTTAAAGCAACCGAA 58.531 39.130 4.79 0.00 0.00 4.30
300 301 3.668491 GCGCATAGTTTTAAAGCAACCGA 60.668 43.478 0.30 0.00 0.00 4.69
301 302 2.592459 GCGCATAGTTTTAAAGCAACCG 59.408 45.455 0.30 3.16 0.00 4.44
302 303 3.363724 GTGCGCATAGTTTTAAAGCAACC 59.636 43.478 15.91 0.00 34.81 3.77
303 304 3.978217 TGTGCGCATAGTTTTAAAGCAAC 59.022 39.130 15.91 0.00 34.81 4.17
304 305 4.230314 TGTGCGCATAGTTTTAAAGCAA 57.770 36.364 15.91 0.00 34.81 3.91
305 306 3.906014 TGTGCGCATAGTTTTAAAGCA 57.094 38.095 15.91 0.00 0.00 3.91
306 307 4.472286 TCTTGTGCGCATAGTTTTAAAGC 58.528 39.130 15.91 0.00 0.00 3.51
307 308 6.801377 TGAATCTTGTGCGCATAGTTTTAAAG 59.199 34.615 15.91 3.01 0.00 1.85
308 309 6.673106 TGAATCTTGTGCGCATAGTTTTAAA 58.327 32.000 15.91 0.00 0.00 1.52
309 310 6.247727 TGAATCTTGTGCGCATAGTTTTAA 57.752 33.333 15.91 6.06 0.00 1.52
310 311 5.673568 GCTGAATCTTGTGCGCATAGTTTTA 60.674 40.000 15.91 11.18 0.00 1.52
311 312 4.726416 CTGAATCTTGTGCGCATAGTTTT 58.274 39.130 15.91 12.25 0.00 2.43
312 313 3.426695 GCTGAATCTTGTGCGCATAGTTT 60.427 43.478 15.91 15.13 0.00 2.66
313 314 2.096496 GCTGAATCTTGTGCGCATAGTT 59.904 45.455 15.91 7.31 0.00 2.24
314 315 1.667724 GCTGAATCTTGTGCGCATAGT 59.332 47.619 15.91 0.00 0.00 2.12
315 316 1.003116 GGCTGAATCTTGTGCGCATAG 60.003 52.381 15.91 14.91 0.00 2.23
316 317 1.016627 GGCTGAATCTTGTGCGCATA 58.983 50.000 15.91 8.59 0.00 3.14
317 318 0.961857 TGGCTGAATCTTGTGCGCAT 60.962 50.000 15.91 0.00 0.00 4.73
318 319 1.171549 TTGGCTGAATCTTGTGCGCA 61.172 50.000 5.66 5.66 0.00 6.09
319 320 0.039256 TTTGGCTGAATCTTGTGCGC 60.039 50.000 0.00 0.00 0.00 6.09
320 321 1.001487 TGTTTGGCTGAATCTTGTGCG 60.001 47.619 0.00 0.00 0.00 5.34
321 322 2.798976 TGTTTGGCTGAATCTTGTGC 57.201 45.000 0.00 0.00 0.00 4.57
322 323 4.082625 TGCTATGTTTGGCTGAATCTTGTG 60.083 41.667 0.00 0.00 0.00 3.33
323 324 4.081406 TGCTATGTTTGGCTGAATCTTGT 58.919 39.130 0.00 0.00 0.00 3.16
324 325 4.418392 GTGCTATGTTTGGCTGAATCTTG 58.582 43.478 0.00 0.00 0.00 3.02
325 326 3.127548 CGTGCTATGTTTGGCTGAATCTT 59.872 43.478 0.00 0.00 0.00 2.40
326 327 2.679837 CGTGCTATGTTTGGCTGAATCT 59.320 45.455 0.00 0.00 0.00 2.40
327 328 2.792542 GCGTGCTATGTTTGGCTGAATC 60.793 50.000 0.00 0.00 0.00 2.52
328 329 1.133025 GCGTGCTATGTTTGGCTGAAT 59.867 47.619 0.00 0.00 0.00 2.57
329 330 0.521291 GCGTGCTATGTTTGGCTGAA 59.479 50.000 0.00 0.00 0.00 3.02
330 331 0.321564 AGCGTGCTATGTTTGGCTGA 60.322 50.000 0.00 0.00 0.00 4.26
331 332 0.097674 GAGCGTGCTATGTTTGGCTG 59.902 55.000 0.00 0.00 0.00 4.85
332 333 0.036010 AGAGCGTGCTATGTTTGGCT 60.036 50.000 0.00 0.00 0.00 4.75
333 334 0.097674 CAGAGCGTGCTATGTTTGGC 59.902 55.000 8.27 0.00 31.32 4.52
355 356 1.216710 GTTCAGGGACGCTCCAGAG 59.783 63.158 6.41 0.00 38.64 3.35
380 381 0.890996 CCACTTCTGGGCTGTTCACC 60.891 60.000 0.00 0.00 33.23 4.02
381 382 0.108585 TCCACTTCTGGGCTGTTCAC 59.891 55.000 0.00 0.00 38.25 3.18
444 445 4.511527 TGATGAGCTCCTCTGCTTTTTAG 58.488 43.478 18.28 0.00 44.17 1.85
446 447 3.345414 CTGATGAGCTCCTCTGCTTTTT 58.655 45.455 18.28 0.00 44.17 1.94
447 448 2.940527 GCTGATGAGCTCCTCTGCTTTT 60.941 50.000 30.28 1.56 44.17 2.27
476 477 2.025727 CGGTTCTAGGCTACGCGG 59.974 66.667 12.47 0.00 0.00 6.46
677 679 1.775208 GATCAAAAATCATTCGGCGCG 59.225 47.619 0.00 0.00 0.00 6.86
678 680 3.070429 AGATCAAAAATCATTCGGCGC 57.930 42.857 0.00 0.00 0.00 6.53
733 735 0.550914 TTAATCCTGGCGAGGGCAAT 59.449 50.000 15.52 0.00 42.47 3.56
886 897 2.428890 AGTGCGATCGAGAAGGAAATCT 59.571 45.455 21.57 0.00 0.00 2.40
946 957 3.217743 GGGTCTCGGGCTACGGAG 61.218 72.222 0.00 0.00 44.45 4.63
1040 1055 2.030457 GCAGAAATAACATCGTCACCGG 59.970 50.000 0.00 0.00 33.95 5.28
1446 1473 3.437795 CCCGTGTCGGCGACTACT 61.438 66.667 36.17 0.00 46.86 2.57
1654 1681 3.069318 GGACGGCGAGAGGGTCTT 61.069 66.667 16.62 0.00 0.00 3.01
1655 1682 3.999297 GAGGACGGCGAGAGGGTCT 62.999 68.421 16.62 0.00 0.00 3.85
1766 1793 1.087771 TGCGCTCATGCTCATGTCTG 61.088 55.000 9.73 3.70 39.72 3.51
1784 1811 1.620413 GCTTCGTAAACCCGTCCGTG 61.620 60.000 0.00 0.00 0.00 4.94
1800 1827 2.173569 AGAGTTTGACCTGAACCTGCTT 59.826 45.455 0.00 0.00 0.00 3.91
1810 1837 3.866449 GCTTGGATCGAAGAGTTTGACCT 60.866 47.826 20.36 0.00 43.63 3.85
1824 1851 0.537188 TCCTCCTCGTTGCTTGGATC 59.463 55.000 0.00 0.00 0.00 3.36
1872 1899 2.582498 GCTTGATCGTCGGACGGG 60.582 66.667 28.07 14.79 42.81 5.28
1892 1919 1.737029 CGTCAACCTCATCATCTGCGT 60.737 52.381 0.00 0.00 0.00 5.24
1899 1926 1.675714 GCCATGTCGTCAACCTCATCA 60.676 52.381 0.00 0.00 0.00 3.07
2004 2031 0.614294 TCTCCTCGTCTCCGTCTTCT 59.386 55.000 0.00 0.00 35.01 2.85
2010 2037 4.225340 CGCGTCTCCTCGTCTCCG 62.225 72.222 0.00 0.00 0.00 4.63
2023 2056 2.280592 GTTGTCACCTTCCCGCGT 60.281 61.111 4.92 0.00 0.00 6.01
2024 2057 2.027625 GAGTTGTCACCTTCCCGCG 61.028 63.158 0.00 0.00 0.00 6.46
2226 2259 5.640189 ACATGAGAGCAATCAAAAGAAGG 57.360 39.130 0.00 0.00 31.76 3.46
2345 2378 9.846248 GCTATGTTGTCAAAGAGTCAATAAAAT 57.154 29.630 0.00 0.00 0.00 1.82
2393 2608 6.038161 CCAAAAATCAACCTTTTCAAACTCCC 59.962 38.462 0.00 0.00 0.00 4.30
2396 2611 7.394016 AGACCAAAAATCAACCTTTTCAAACT 58.606 30.769 0.00 0.00 0.00 2.66
2410 2625 7.278868 AGTCGATATGTTGAGAGACCAAAAATC 59.721 37.037 0.00 0.00 0.00 2.17
2427 2642 5.451908 ACAAAAACTGCACAAGTCGATATG 58.548 37.500 0.00 0.00 38.56 1.78
2431 2646 2.744741 TGACAAAAACTGCACAAGTCGA 59.255 40.909 0.00 0.00 38.56 4.20
2523 2738 2.835027 GTCGAAGGACCAAACTTGTCT 58.165 47.619 0.00 0.00 37.19 3.41
2537 2752 1.135575 GCATTGAAAGCAGGGTCGAAG 60.136 52.381 0.00 0.00 0.00 3.79
2538 2753 0.881118 GCATTGAAAGCAGGGTCGAA 59.119 50.000 0.00 0.00 0.00 3.71
2548 2763 6.017400 ACCACATTGAGTTAGCATTGAAAG 57.983 37.500 0.00 0.00 0.00 2.62
2552 2767 4.925054 CCAAACCACATTGAGTTAGCATTG 59.075 41.667 0.00 0.00 31.84 2.82
2587 2802 1.831106 AGAGATACATTGGCACGTGGA 59.169 47.619 18.88 0.00 0.00 4.02
2591 2806 2.158900 AGGGAAGAGATACATTGGCACG 60.159 50.000 0.00 0.00 0.00 5.34
2595 2810 3.135348 TGAGCAGGGAAGAGATACATTGG 59.865 47.826 0.00 0.00 0.00 3.16
2613 2828 1.471684 CTCATTTGAAGGCCACTGAGC 59.528 52.381 5.01 0.00 31.83 4.26
2637 2852 5.390356 CGCAAAATGGAGAGAGAAGAAAGTC 60.390 44.000 0.00 0.00 0.00 3.01
2672 2888 0.911769 TCATCAGTCCGGCCTCATTT 59.088 50.000 0.00 0.00 0.00 2.32
2709 2925 1.929169 CGCAGTCATCGATGTCACAAT 59.071 47.619 24.09 2.02 0.00 2.71
2766 2982 5.426509 TGAGAAGTCATGGATCCTACACAAT 59.573 40.000 14.23 0.00 0.00 2.71
2816 3032 8.192774 TCATAAATGGCAGATGTGAAAGATTTC 58.807 33.333 0.00 0.00 37.69 2.17
2881 3097 4.021102 ACCGTGAAGATTTGAATCCTGT 57.979 40.909 0.27 0.00 36.04 4.00
2884 3100 3.756434 TGGAACCGTGAAGATTTGAATCC 59.244 43.478 0.27 0.00 36.04 3.01
2937 3153 3.033659 TCTTAAGAGAGAAGGGCGGAT 57.966 47.619 0.00 0.00 0.00 4.18
2938 3154 2.526888 TCTTAAGAGAGAAGGGCGGA 57.473 50.000 0.00 0.00 0.00 5.54
3057 3273 9.483916 CATGTATCACTGTTTCCGGTTAATATA 57.516 33.333 0.00 0.00 0.00 0.86
3058 3274 7.990886 ACATGTATCACTGTTTCCGGTTAATAT 59.009 33.333 0.00 0.00 0.00 1.28
3059 3275 7.279090 CACATGTATCACTGTTTCCGGTTAATA 59.721 37.037 0.00 0.00 0.00 0.98
3060 3276 6.093495 CACATGTATCACTGTTTCCGGTTAAT 59.907 38.462 0.00 0.00 0.00 1.40
3061 3277 5.410132 CACATGTATCACTGTTTCCGGTTAA 59.590 40.000 0.00 0.00 0.00 2.01
3062 3278 4.932799 CACATGTATCACTGTTTCCGGTTA 59.067 41.667 0.00 0.00 0.00 2.85
3063 3279 3.751175 CACATGTATCACTGTTTCCGGTT 59.249 43.478 0.00 0.00 0.00 4.44
3064 3280 3.244422 ACACATGTATCACTGTTTCCGGT 60.244 43.478 0.00 0.00 0.00 5.28
3065 3281 3.125146 CACACATGTATCACTGTTTCCGG 59.875 47.826 0.00 0.00 0.00 5.14
3066 3282 3.993736 TCACACATGTATCACTGTTTCCG 59.006 43.478 0.00 0.00 0.00 4.30
3067 3283 5.940192 TTCACACATGTATCACTGTTTCC 57.060 39.130 0.00 0.00 0.00 3.13
3068 3284 8.028540 TGTATTCACACATGTATCACTGTTTC 57.971 34.615 0.00 0.00 0.00 2.78
3069 3285 7.977789 TGTATTCACACATGTATCACTGTTT 57.022 32.000 0.00 0.00 0.00 2.83
3070 3286 9.317936 CTATGTATTCACACATGTATCACTGTT 57.682 33.333 0.00 0.00 39.46 3.16
3071 3287 8.695456 TCTATGTATTCACACATGTATCACTGT 58.305 33.333 0.00 0.00 39.46 3.55
3072 3288 8.972349 GTCTATGTATTCACACATGTATCACTG 58.028 37.037 0.00 0.00 39.46 3.66
3073 3289 8.144478 GGTCTATGTATTCACACATGTATCACT 58.856 37.037 0.00 0.00 39.46 3.41
3074 3290 7.926018 TGGTCTATGTATTCACACATGTATCAC 59.074 37.037 0.00 0.00 39.46 3.06
3075 3291 7.926018 GTGGTCTATGTATTCACACATGTATCA 59.074 37.037 0.00 0.00 39.46 2.15
3076 3292 7.926018 TGTGGTCTATGTATTCACACATGTATC 59.074 37.037 0.00 0.00 39.46 2.24
3077 3293 7.791029 TGTGGTCTATGTATTCACACATGTAT 58.209 34.615 0.00 0.00 39.46 2.29
3078 3294 7.176589 TGTGGTCTATGTATTCACACATGTA 57.823 36.000 0.00 0.00 39.46 2.29
3079 3295 6.048732 TGTGGTCTATGTATTCACACATGT 57.951 37.500 0.00 0.00 39.46 3.21
3080 3296 6.371271 TGTTGTGGTCTATGTATTCACACATG 59.629 38.462 0.00 0.00 39.46 3.21
3081 3297 6.472016 TGTTGTGGTCTATGTATTCACACAT 58.528 36.000 0.00 0.00 41.88 3.21
3082 3298 5.859495 TGTTGTGGTCTATGTATTCACACA 58.141 37.500 0.00 0.00 37.96 3.72
3083 3299 6.371548 ACATGTTGTGGTCTATGTATTCACAC 59.628 38.462 0.00 0.00 37.96 3.82
3084 3300 6.472016 ACATGTTGTGGTCTATGTATTCACA 58.528 36.000 0.00 0.00 39.52 3.58
3085 3301 6.037172 GGACATGTTGTGGTCTATGTATTCAC 59.963 42.308 0.00 0.00 34.18 3.18
3086 3302 6.112734 GGACATGTTGTGGTCTATGTATTCA 58.887 40.000 0.00 0.00 34.18 2.57
3087 3303 5.527582 GGGACATGTTGTGGTCTATGTATTC 59.472 44.000 0.00 0.00 34.18 1.75
3088 3304 5.191722 AGGGACATGTTGTGGTCTATGTATT 59.808 40.000 0.00 0.00 34.18 1.89
3089 3305 4.721776 AGGGACATGTTGTGGTCTATGTAT 59.278 41.667 0.00 0.00 34.18 2.29
3090 3306 4.101114 AGGGACATGTTGTGGTCTATGTA 58.899 43.478 0.00 0.00 34.18 2.29
3091 3307 2.912956 AGGGACATGTTGTGGTCTATGT 59.087 45.455 0.00 0.00 36.54 2.29
3092 3308 3.634397 AGGGACATGTTGTGGTCTATG 57.366 47.619 0.00 0.00 34.49 2.23
3093 3309 4.162320 CACTAGGGACATGTTGTGGTCTAT 59.838 45.833 0.00 0.00 34.49 1.98
3094 3310 3.513912 CACTAGGGACATGTTGTGGTCTA 59.486 47.826 0.00 0.00 34.49 2.59
3095 3311 2.303022 CACTAGGGACATGTTGTGGTCT 59.697 50.000 0.00 0.00 34.49 3.85
3096 3312 2.301870 TCACTAGGGACATGTTGTGGTC 59.698 50.000 0.00 0.00 0.00 4.02
3097 3313 2.303022 CTCACTAGGGACATGTTGTGGT 59.697 50.000 0.00 0.00 0.00 4.16
3098 3314 2.936993 GCTCACTAGGGACATGTTGTGG 60.937 54.545 0.00 0.00 0.00 4.17
3099 3315 2.350522 GCTCACTAGGGACATGTTGTG 58.649 52.381 0.00 5.31 0.00 3.33
3100 3316 1.279271 GGCTCACTAGGGACATGTTGT 59.721 52.381 0.00 0.00 0.00 3.32
3101 3317 1.556911 AGGCTCACTAGGGACATGTTG 59.443 52.381 0.00 0.00 0.00 3.33
3102 3318 1.834263 GAGGCTCACTAGGGACATGTT 59.166 52.381 10.25 0.00 0.00 2.71
3103 3319 1.007721 AGAGGCTCACTAGGGACATGT 59.992 52.381 18.26 0.00 0.00 3.21
3104 3320 1.786937 AGAGGCTCACTAGGGACATG 58.213 55.000 18.26 0.00 0.00 3.21
3105 3321 2.516277 ACTAGAGGCTCACTAGGGACAT 59.484 50.000 18.26 0.00 40.86 3.06
3106 3322 1.923850 ACTAGAGGCTCACTAGGGACA 59.076 52.381 18.26 0.00 40.86 4.02
3107 3323 2.691011 CAACTAGAGGCTCACTAGGGAC 59.309 54.545 18.26 0.00 40.86 4.46
3108 3324 2.581246 TCAACTAGAGGCTCACTAGGGA 59.419 50.000 18.26 9.66 40.86 4.20
3109 3325 2.691011 GTCAACTAGAGGCTCACTAGGG 59.309 54.545 18.26 7.64 40.86 3.53
3110 3326 3.626930 AGTCAACTAGAGGCTCACTAGG 58.373 50.000 18.26 3.24 40.86 3.02
3111 3327 4.274950 GCTAGTCAACTAGAGGCTCACTAG 59.725 50.000 23.14 23.14 46.80 2.57
3112 3328 4.080243 AGCTAGTCAACTAGAGGCTCACTA 60.080 45.833 18.26 12.80 46.80 2.74
3113 3329 3.020984 GCTAGTCAACTAGAGGCTCACT 58.979 50.000 18.26 12.32 46.80 3.41
3114 3330 3.020984 AGCTAGTCAACTAGAGGCTCAC 58.979 50.000 18.26 4.72 46.80 3.51
3115 3331 3.283751 GAGCTAGTCAACTAGAGGCTCA 58.716 50.000 18.26 1.80 46.80 4.26
3116 3332 2.289547 CGAGCTAGTCAACTAGAGGCTC 59.710 54.545 19.03 16.73 46.80 4.70
3117 3333 2.294074 CGAGCTAGTCAACTAGAGGCT 58.706 52.381 19.03 10.84 46.80 4.58
3118 3334 2.018515 ACGAGCTAGTCAACTAGAGGC 58.981 52.381 19.03 6.58 46.80 4.70
3119 3335 3.690139 TCAACGAGCTAGTCAACTAGAGG 59.310 47.826 19.03 10.05 46.80 3.69
3120 3336 4.948608 TCAACGAGCTAGTCAACTAGAG 57.051 45.455 19.03 11.89 46.80 2.43
3121 3337 4.941873 TGATCAACGAGCTAGTCAACTAGA 59.058 41.667 19.03 0.00 46.80 2.43
3122 3338 5.236655 TGATCAACGAGCTAGTCAACTAG 57.763 43.478 11.99 11.99 46.63 2.57
3123 3339 5.048294 TGTTGATCAACGAGCTAGTCAACTA 60.048 40.000 28.55 7.59 43.38 2.24
3124 3340 4.238514 GTTGATCAACGAGCTAGTCAACT 58.761 43.478 22.09 0.00 41.13 3.16
3125 3341 3.987868 TGTTGATCAACGAGCTAGTCAAC 59.012 43.478 28.55 16.99 43.94 3.18
3126 3342 4.237724 CTGTTGATCAACGAGCTAGTCAA 58.762 43.478 28.55 10.18 43.94 3.18
3127 3343 3.367395 CCTGTTGATCAACGAGCTAGTCA 60.367 47.826 28.55 10.88 43.94 3.41
3128 3344 3.182967 CCTGTTGATCAACGAGCTAGTC 58.817 50.000 28.55 6.98 43.94 2.59
3129 3345 2.563179 ACCTGTTGATCAACGAGCTAGT 59.437 45.455 28.55 17.59 43.94 2.57
3130 3346 3.238108 ACCTGTTGATCAACGAGCTAG 57.762 47.619 28.55 20.60 43.94 3.42
3131 3347 3.762288 ACTACCTGTTGATCAACGAGCTA 59.238 43.478 28.55 17.88 43.94 3.32
3132 3348 2.563179 ACTACCTGTTGATCAACGAGCT 59.437 45.455 28.55 17.75 43.94 4.09
3133 3349 2.924290 GACTACCTGTTGATCAACGAGC 59.076 50.000 28.55 16.14 43.94 5.03
3134 3350 4.174411 TGACTACCTGTTGATCAACGAG 57.826 45.455 28.55 24.17 43.94 4.18
3135 3351 4.494484 CATGACTACCTGTTGATCAACGA 58.506 43.478 28.55 18.43 43.94 3.85
3136 3352 3.618594 CCATGACTACCTGTTGATCAACG 59.381 47.826 28.55 22.72 43.94 4.10
3137 3353 4.579869 ACCATGACTACCTGTTGATCAAC 58.420 43.478 28.10 28.10 41.50 3.18
3138 3354 4.908601 ACCATGACTACCTGTTGATCAA 57.091 40.909 3.38 3.38 0.00 2.57
3139 3355 4.908601 AACCATGACTACCTGTTGATCA 57.091 40.909 0.00 0.00 0.00 2.92
3140 3356 4.636206 GGAAACCATGACTACCTGTTGATC 59.364 45.833 0.00 0.00 0.00 2.92
3141 3357 4.289672 AGGAAACCATGACTACCTGTTGAT 59.710 41.667 0.00 0.00 0.00 2.57
3142 3358 3.650942 AGGAAACCATGACTACCTGTTGA 59.349 43.478 0.00 0.00 0.00 3.18
3143 3359 3.753272 CAGGAAACCATGACTACCTGTTG 59.247 47.826 15.62 0.00 39.68 3.33
3144 3360 3.650942 TCAGGAAACCATGACTACCTGTT 59.349 43.478 19.95 3.14 43.39 3.16
3145 3361 3.008049 GTCAGGAAACCATGACTACCTGT 59.992 47.826 19.95 0.00 43.39 4.00
3146 3362 3.600388 GTCAGGAAACCATGACTACCTG 58.400 50.000 16.90 16.90 42.06 4.00
3147 3363 3.983044 GTCAGGAAACCATGACTACCT 57.017 47.619 0.00 0.00 42.06 3.08
3152 3368 4.192317 GTCCATAGTCAGGAAACCATGAC 58.808 47.826 0.00 2.44 44.97 3.06
3153 3369 3.843619 TGTCCATAGTCAGGAAACCATGA 59.156 43.478 0.00 0.00 36.80 3.07
3154 3370 4.220693 TGTCCATAGTCAGGAAACCATG 57.779 45.455 0.00 0.00 36.80 3.66
3155 3371 5.195940 CAATGTCCATAGTCAGGAAACCAT 58.804 41.667 0.00 0.00 36.80 3.55
3156 3372 4.567537 CCAATGTCCATAGTCAGGAAACCA 60.568 45.833 0.00 0.00 36.80 3.67
3157 3373 3.947834 CCAATGTCCATAGTCAGGAAACC 59.052 47.826 0.00 0.00 36.80 3.27
3158 3374 4.843728 TCCAATGTCCATAGTCAGGAAAC 58.156 43.478 0.00 0.00 36.80 2.78
3159 3375 5.044919 ACATCCAATGTCCATAGTCAGGAAA 60.045 40.000 0.00 0.00 39.92 3.13
3160 3376 4.474651 ACATCCAATGTCCATAGTCAGGAA 59.525 41.667 0.00 0.00 39.92 3.36
3161 3377 4.040047 ACATCCAATGTCCATAGTCAGGA 58.960 43.478 0.00 0.00 39.92 3.86
3162 3378 4.428294 ACATCCAATGTCCATAGTCAGG 57.572 45.455 0.00 0.00 39.92 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.