Multiple sequence alignment - TraesCS2B01G434900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G434900 chr2B 100.000 3067 0 0 1 3067 624890321 624893387 0.000000e+00 5664.0
1 TraesCS2B01G434900 chr2D 93.045 2660 83 42 453 3067 527546242 527548844 0.000000e+00 3794.0
2 TraesCS2B01G434900 chr2A 92.620 2656 105 38 453 3067 672414646 672417251 0.000000e+00 3735.0
3 TraesCS2B01G434900 chr2A 90.164 61 1 1 4 59 672414543 672414603 1.180000e-09 75.0
4 TraesCS2B01G434900 chr3B 98.193 166 3 0 289 454 461200408 461200573 1.080000e-74 291.0
5 TraesCS2B01G434900 chr3B 96.023 176 6 1 285 460 54798116 54798290 5.010000e-73 285.0
6 TraesCS2B01G434900 chr3B 96.000 175 6 1 281 454 156649793 156649967 1.800000e-72 283.0
7 TraesCS2B01G434900 chr1A 96.045 177 7 0 283 459 328799025 328799201 3.870000e-74 289.0
8 TraesCS2B01G434900 chr1A 96.023 176 4 2 279 454 526575513 526575685 1.800000e-72 283.0
9 TraesCS2B01G434900 chr1A 86.070 201 19 4 1756 1947 387840975 387840775 1.110000e-49 207.0
10 TraesCS2B01G434900 chr1A 81.538 130 21 1 1281 1407 387841307 387841178 1.500000e-18 104.0
11 TraesCS2B01G434900 chr1A 83.146 89 14 1 1543 1631 387841057 387840970 2.540000e-11 80.5
12 TraesCS2B01G434900 chr3A 96.000 175 7 0 283 457 222451042 222450868 5.010000e-73 285.0
13 TraesCS2B01G434900 chr7B 95.977 174 5 1 286 457 215365507 215365680 6.470000e-72 281.0
14 TraesCS2B01G434900 chr5B 95.977 174 6 1 284 457 314576240 314576068 6.470000e-72 281.0
15 TraesCS2B01G434900 chr5B 85.784 204 21 5 1754 1956 407817231 407817035 3.100000e-50 209.0
16 TraesCS2B01G434900 chr6B 94.475 181 9 1 280 459 703686137 703685957 8.380000e-71 278.0
17 TraesCS2B01G434900 chr5D 87.692 195 16 5 1754 1947 344399996 344400183 1.430000e-53 220.0
18 TraesCS2B01G434900 chr5A 87.692 195 16 5 1754 1947 448091106 448091293 1.430000e-53 220.0
19 TraesCS2B01G434900 chr1B 86.070 201 19 4 1756 1947 418106021 418105821 1.110000e-49 207.0
20 TraesCS2B01G434900 chr1B 84.091 88 13 1 1544 1631 418106102 418106016 1.960000e-12 84.2
21 TraesCS2B01G434900 chr4B 90.441 136 12 1 1754 1888 491465484 491465619 8.740000e-41 178.0
22 TraesCS2B01G434900 chr4A 92.683 123 9 0 1754 1876 56145033 56145155 8.740000e-41 178.0
23 TraesCS2B01G434900 chr4A 82.955 88 15 0 1536 1623 660624967 660625054 2.540000e-11 80.5
24 TraesCS2B01G434900 chr4A 84.146 82 13 0 1542 1623 660654521 660654602 2.540000e-11 80.5
25 TraesCS2B01G434900 chr4A 100.000 39 0 0 2264 2302 718536692 718536730 4.240000e-09 73.1
26 TraesCS2B01G434900 chr1D 84.270 89 13 1 1543 1631 308459711 308459624 5.450000e-13 86.1
27 TraesCS2B01G434900 chr7A 84.146 82 13 0 1542 1623 48756248 48756329 2.540000e-11 80.5
28 TraesCS2B01G434900 chr7D 83.750 80 13 0 1544 1623 46586128 46586049 3.280000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G434900 chr2B 624890321 624893387 3066 False 5664 5664 100.000 1 3067 1 chr2B.!!$F1 3066
1 TraesCS2B01G434900 chr2D 527546242 527548844 2602 False 3794 3794 93.045 453 3067 1 chr2D.!!$F1 2614
2 TraesCS2B01G434900 chr2A 672414543 672417251 2708 False 1905 3735 91.392 4 3067 2 chr2A.!!$F1 3063

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
160 166 0.033208 TTCATTGATGGGCCCACCTC 60.033 55.0 31.51 23.26 41.11 3.85 F
1136 1168 0.037326 TTACTGCTTCAGCTCCGGTG 60.037 55.0 0.00 0.00 42.66 4.94 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1978 2023 0.455295 CGCGGTGTTGTTGTTGTTGT 60.455 50.0 0.0 0.0 0.0 3.32 R
2829 2897 0.674269 GGGGTTTTATGGCGTCGTGA 60.674 55.0 0.0 0.0 0.0 4.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 6.510638 GCACATAAACCGGTAAATGCTAGTAC 60.511 42.308 22.62 7.84 0.00 2.73
60 66 3.809832 CACTCCAAAAGGGTGCTATATCG 59.190 47.826 0.00 0.00 38.11 2.92
61 67 3.709653 ACTCCAAAAGGGTGCTATATCGA 59.290 43.478 0.00 0.00 38.11 3.59
62 68 4.348168 ACTCCAAAAGGGTGCTATATCGAT 59.652 41.667 2.16 2.16 38.11 3.59
63 69 5.542635 ACTCCAAAAGGGTGCTATATCGATA 59.457 40.000 7.75 7.75 38.11 2.92
64 70 6.042781 ACTCCAAAAGGGTGCTATATCGATAA 59.957 38.462 9.61 0.00 38.11 1.75
65 71 7.016153 TCCAAAAGGGTGCTATATCGATAAT 57.984 36.000 9.61 1.24 38.11 1.28
66 72 8.141298 TCCAAAAGGGTGCTATATCGATAATA 57.859 34.615 9.61 2.34 38.11 0.98
67 73 8.038944 TCCAAAAGGGTGCTATATCGATAATAC 58.961 37.037 9.61 6.25 38.11 1.89
68 74 8.041323 CCAAAAGGGTGCTATATCGATAATACT 58.959 37.037 9.61 0.00 0.00 2.12
71 77 9.696572 AAAGGGTGCTATATCGATAATACTAGA 57.303 33.333 9.61 0.00 0.00 2.43
72 78 9.869667 AAGGGTGCTATATCGATAATACTAGAT 57.130 33.333 9.61 0.00 0.00 1.98
73 79 9.869667 AGGGTGCTATATCGATAATACTAGATT 57.130 33.333 9.61 0.00 0.00 2.40
78 84 9.814507 GCTATATCGATAATACTAGATTCACGG 57.185 37.037 9.61 0.00 0.00 4.94
89 95 6.961360 ACTAGATTCACGGATAATCAGTGA 57.039 37.500 6.84 6.84 46.80 3.41
92 98 2.863401 TCACGGATAATCAGTGACGG 57.137 50.000 6.84 0.00 44.41 4.79
93 99 2.371306 TCACGGATAATCAGTGACGGA 58.629 47.619 6.84 0.00 44.41 4.69
94 100 2.756207 TCACGGATAATCAGTGACGGAA 59.244 45.455 6.84 0.00 44.41 4.30
95 101 3.383505 TCACGGATAATCAGTGACGGAAT 59.616 43.478 6.84 0.00 44.41 3.01
96 102 4.119862 CACGGATAATCAGTGACGGAATT 58.880 43.478 0.00 0.00 43.67 2.17
97 103 4.570772 CACGGATAATCAGTGACGGAATTT 59.429 41.667 0.00 0.00 43.67 1.82
98 104 4.809426 ACGGATAATCAGTGACGGAATTTC 59.191 41.667 0.00 0.00 0.00 2.17
99 105 4.808895 CGGATAATCAGTGACGGAATTTCA 59.191 41.667 0.00 0.00 0.00 2.69
100 106 5.276868 CGGATAATCAGTGACGGAATTTCAC 60.277 44.000 0.00 1.22 43.24 3.18
101 107 5.276868 GGATAATCAGTGACGGAATTTCACG 60.277 44.000 0.00 2.66 46.73 4.35
102 108 1.790755 TCAGTGACGGAATTTCACGG 58.209 50.000 10.57 3.52 46.73 4.94
103 109 1.341852 TCAGTGACGGAATTTCACGGA 59.658 47.619 7.30 7.30 46.73 4.69
104 110 1.459592 CAGTGACGGAATTTCACGGAC 59.540 52.381 3.62 7.45 46.73 4.79
105 111 1.069513 AGTGACGGAATTTCACGGACA 59.930 47.619 10.57 8.00 46.73 4.02
106 112 1.193874 GTGACGGAATTTCACGGACAC 59.806 52.381 15.54 15.54 34.41 3.67
107 113 1.202545 TGACGGAATTTCACGGACACA 60.203 47.619 10.57 4.60 0.00 3.72
108 114 1.459592 GACGGAATTTCACGGACACAG 59.540 52.381 10.57 0.00 0.00 3.66
109 115 0.796312 CGGAATTTCACGGACACAGG 59.204 55.000 0.00 0.00 0.00 4.00
110 116 1.876416 CGGAATTTCACGGACACAGGT 60.876 52.381 0.00 0.00 0.00 4.00
111 117 1.535462 GGAATTTCACGGACACAGGTG 59.465 52.381 0.00 0.00 35.50 4.00
112 118 0.951558 AATTTCACGGACACAGGTGC 59.048 50.000 0.00 0.00 34.20 5.01
118 124 2.668550 GGACACAGGTGCGTTCCC 60.669 66.667 0.00 0.00 0.00 3.97
119 125 2.426023 GACACAGGTGCGTTCCCT 59.574 61.111 0.00 0.00 0.00 4.20
120 126 1.668151 GACACAGGTGCGTTCCCTC 60.668 63.158 0.00 0.00 0.00 4.30
121 127 2.358737 CACAGGTGCGTTCCCTCC 60.359 66.667 0.00 0.00 0.00 4.30
122 128 2.526873 ACAGGTGCGTTCCCTCCT 60.527 61.111 0.00 0.00 0.00 3.69
123 129 2.266055 CAGGTGCGTTCCCTCCTC 59.734 66.667 0.00 0.00 0.00 3.71
124 130 2.120718 AGGTGCGTTCCCTCCTCT 59.879 61.111 0.00 0.00 0.00 3.69
125 131 0.970937 CAGGTGCGTTCCCTCCTCTA 60.971 60.000 0.00 0.00 0.00 2.43
126 132 0.252103 AGGTGCGTTCCCTCCTCTAA 60.252 55.000 0.00 0.00 0.00 2.10
127 133 0.831307 GGTGCGTTCCCTCCTCTAAT 59.169 55.000 0.00 0.00 0.00 1.73
128 134 1.209747 GGTGCGTTCCCTCCTCTAATT 59.790 52.381 0.00 0.00 0.00 1.40
129 135 2.280628 GTGCGTTCCCTCCTCTAATTG 58.719 52.381 0.00 0.00 0.00 2.32
130 136 1.300481 GCGTTCCCTCCTCTAATTGC 58.700 55.000 0.00 0.00 0.00 3.56
131 137 1.954927 CGTTCCCTCCTCTAATTGCC 58.045 55.000 0.00 0.00 0.00 4.52
132 138 1.475213 CGTTCCCTCCTCTAATTGCCC 60.475 57.143 0.00 0.00 0.00 5.36
133 139 1.133761 GTTCCCTCCTCTAATTGCCCC 60.134 57.143 0.00 0.00 0.00 5.80
134 140 0.697854 TCCCTCCTCTAATTGCCCCC 60.698 60.000 0.00 0.00 0.00 5.40
152 158 2.701951 CCCCCTGATTTTCATTGATGGG 59.298 50.000 0.00 0.00 0.00 4.00
153 159 2.103601 CCCCTGATTTTCATTGATGGGC 59.896 50.000 0.00 0.00 32.48 5.36
154 160 2.103601 CCCTGATTTTCATTGATGGGCC 59.896 50.000 0.00 0.00 0.00 5.80
155 161 2.103601 CCTGATTTTCATTGATGGGCCC 59.896 50.000 17.59 17.59 0.00 5.80
156 162 2.767394 CTGATTTTCATTGATGGGCCCA 59.233 45.455 30.92 30.92 0.00 5.36
157 163 2.500910 TGATTTTCATTGATGGGCCCAC 59.499 45.455 31.51 21.60 0.00 4.61
158 164 1.274712 TTTTCATTGATGGGCCCACC 58.725 50.000 31.51 21.55 40.81 4.61
159 165 0.413037 TTTCATTGATGGGCCCACCT 59.587 50.000 31.51 13.67 41.11 4.00
160 166 0.033208 TTCATTGATGGGCCCACCTC 60.033 55.000 31.51 23.26 41.11 3.85
161 167 1.213619 TCATTGATGGGCCCACCTCA 61.214 55.000 31.51 25.93 41.11 3.86
162 168 1.039233 CATTGATGGGCCCACCTCAC 61.039 60.000 31.51 16.55 41.11 3.51
163 169 1.217057 ATTGATGGGCCCACCTCACT 61.217 55.000 31.51 19.57 41.11 3.41
164 170 1.434513 TTGATGGGCCCACCTCACTT 61.435 55.000 31.51 9.72 41.11 3.16
165 171 0.548926 TGATGGGCCCACCTCACTTA 60.549 55.000 31.51 3.28 41.11 2.24
166 172 0.623723 GATGGGCCCACCTCACTTAA 59.376 55.000 31.51 0.00 41.11 1.85
167 173 1.215423 GATGGGCCCACCTCACTTAAT 59.785 52.381 31.51 6.80 41.11 1.40
168 174 1.080638 TGGGCCCACCTCACTTAATT 58.919 50.000 24.45 0.00 41.11 1.40
169 175 2.280103 TGGGCCCACCTCACTTAATTA 58.720 47.619 24.45 0.00 41.11 1.40
170 176 2.650322 TGGGCCCACCTCACTTAATTAA 59.350 45.455 24.45 0.00 41.11 1.40
171 177 3.076182 TGGGCCCACCTCACTTAATTAAA 59.924 43.478 24.45 0.00 41.11 1.52
172 178 3.446161 GGGCCCACCTCACTTAATTAAAC 59.554 47.826 19.95 0.00 35.85 2.01
173 179 3.446161 GGCCCACCTCACTTAATTAAACC 59.554 47.826 0.00 0.00 0.00 3.27
174 180 4.341487 GCCCACCTCACTTAATTAAACCT 58.659 43.478 0.00 0.00 0.00 3.50
175 181 4.770531 GCCCACCTCACTTAATTAAACCTT 59.229 41.667 0.00 0.00 0.00 3.50
176 182 5.947566 GCCCACCTCACTTAATTAAACCTTA 59.052 40.000 0.00 0.00 0.00 2.69
177 183 6.434965 GCCCACCTCACTTAATTAAACCTTAA 59.565 38.462 0.00 0.00 0.00 1.85
178 184 7.576287 GCCCACCTCACTTAATTAAACCTTAAC 60.576 40.741 0.00 0.00 0.00 2.01
179 185 7.094075 CCCACCTCACTTAATTAAACCTTAACC 60.094 40.741 0.00 0.00 0.00 2.85
180 186 7.449086 CCACCTCACTTAATTAAACCTTAACCA 59.551 37.037 0.00 0.00 0.00 3.67
181 187 8.852135 CACCTCACTTAATTAAACCTTAACCAA 58.148 33.333 0.00 0.00 0.00 3.67
182 188 9.596308 ACCTCACTTAATTAAACCTTAACCAAT 57.404 29.630 0.00 0.00 0.00 3.16
195 201 8.893563 AACCTTAACCAATCAAATCCTAATCA 57.106 30.769 0.00 0.00 0.00 2.57
196 202 8.293699 ACCTTAACCAATCAAATCCTAATCAC 57.706 34.615 0.00 0.00 0.00 3.06
197 203 7.342026 ACCTTAACCAATCAAATCCTAATCACC 59.658 37.037 0.00 0.00 0.00 4.02
198 204 7.201911 CCTTAACCAATCAAATCCTAATCACCC 60.202 40.741 0.00 0.00 0.00 4.61
199 205 5.205517 ACCAATCAAATCCTAATCACCCA 57.794 39.130 0.00 0.00 0.00 4.51
200 206 5.203528 ACCAATCAAATCCTAATCACCCAG 58.796 41.667 0.00 0.00 0.00 4.45
201 207 5.203528 CCAATCAAATCCTAATCACCCAGT 58.796 41.667 0.00 0.00 0.00 4.00
202 208 6.069088 ACCAATCAAATCCTAATCACCCAGTA 60.069 38.462 0.00 0.00 0.00 2.74
203 209 6.833416 CCAATCAAATCCTAATCACCCAGTAA 59.167 38.462 0.00 0.00 0.00 2.24
204 210 7.341769 CCAATCAAATCCTAATCACCCAGTAAA 59.658 37.037 0.00 0.00 0.00 2.01
205 211 8.917088 CAATCAAATCCTAATCACCCAGTAAAT 58.083 33.333 0.00 0.00 0.00 1.40
206 212 8.697507 ATCAAATCCTAATCACCCAGTAAATC 57.302 34.615 0.00 0.00 0.00 2.17
207 213 7.060421 TCAAATCCTAATCACCCAGTAAATCC 58.940 38.462 0.00 0.00 0.00 3.01
208 214 5.584551 ATCCTAATCACCCAGTAAATCCC 57.415 43.478 0.00 0.00 0.00 3.85
209 215 3.720002 TCCTAATCACCCAGTAAATCCCC 59.280 47.826 0.00 0.00 0.00 4.81
210 216 3.181433 CCTAATCACCCAGTAAATCCCCC 60.181 52.174 0.00 0.00 0.00 5.40
211 217 0.843984 ATCACCCAGTAAATCCCCCG 59.156 55.000 0.00 0.00 0.00 5.73
212 218 0.548197 TCACCCAGTAAATCCCCCGT 60.548 55.000 0.00 0.00 0.00 5.28
213 219 1.205966 CACCCAGTAAATCCCCCGTA 58.794 55.000 0.00 0.00 0.00 4.02
214 220 1.560611 CACCCAGTAAATCCCCCGTAA 59.439 52.381 0.00 0.00 0.00 3.18
215 221 1.561076 ACCCAGTAAATCCCCCGTAAC 59.439 52.381 0.00 0.00 0.00 2.50
216 222 1.560611 CCCAGTAAATCCCCCGTAACA 59.439 52.381 0.00 0.00 0.00 2.41
217 223 2.420967 CCCAGTAAATCCCCCGTAACAG 60.421 54.545 0.00 0.00 0.00 3.16
218 224 2.237893 CCAGTAAATCCCCCGTAACAGT 59.762 50.000 0.00 0.00 0.00 3.55
219 225 3.528532 CAGTAAATCCCCCGTAACAGTC 58.471 50.000 0.00 0.00 0.00 3.51
220 226 2.502947 AGTAAATCCCCCGTAACAGTCC 59.497 50.000 0.00 0.00 0.00 3.85
221 227 0.251073 AAATCCCCCGTAACAGTCCG 59.749 55.000 0.00 0.00 0.00 4.79
222 228 0.906282 AATCCCCCGTAACAGTCCGT 60.906 55.000 0.00 0.00 0.00 4.69
223 229 1.610554 ATCCCCCGTAACAGTCCGTG 61.611 60.000 0.00 0.00 0.00 4.94
224 230 2.576832 CCCCCGTAACAGTCCGTGT 61.577 63.158 0.00 0.00 43.24 4.49
225 231 1.373748 CCCCGTAACAGTCCGTGTG 60.374 63.158 0.00 0.00 40.26 3.82
226 232 1.364901 CCCGTAACAGTCCGTGTGT 59.635 57.895 0.00 0.00 40.26 3.72
227 233 0.665369 CCCGTAACAGTCCGTGTGTC 60.665 60.000 0.00 0.00 40.26 3.67
228 234 0.313043 CCGTAACAGTCCGTGTGTCT 59.687 55.000 0.00 0.00 40.26 3.41
229 235 1.536766 CCGTAACAGTCCGTGTGTCTA 59.463 52.381 0.00 0.00 40.26 2.59
230 236 2.413765 CCGTAACAGTCCGTGTGTCTAG 60.414 54.545 0.00 0.00 40.26 2.43
231 237 2.593257 GTAACAGTCCGTGTGTCTAGC 58.407 52.381 0.00 0.00 40.26 3.42
232 238 1.037493 AACAGTCCGTGTGTCTAGCA 58.963 50.000 0.00 0.00 40.26 3.49
233 239 1.257743 ACAGTCCGTGTGTCTAGCAT 58.742 50.000 0.00 0.00 38.28 3.79
234 240 1.618837 ACAGTCCGTGTGTCTAGCATT 59.381 47.619 0.00 0.00 38.28 3.56
235 241 2.823747 ACAGTCCGTGTGTCTAGCATTA 59.176 45.455 0.00 0.00 38.28 1.90
236 242 3.179830 CAGTCCGTGTGTCTAGCATTAC 58.820 50.000 0.00 0.00 0.00 1.89
237 243 3.090037 AGTCCGTGTGTCTAGCATTACT 58.910 45.455 0.00 0.00 0.00 2.24
238 244 3.128938 AGTCCGTGTGTCTAGCATTACTC 59.871 47.826 0.00 0.00 0.00 2.59
239 245 2.096980 TCCGTGTGTCTAGCATTACTCG 59.903 50.000 0.00 0.00 0.00 4.18
240 246 2.159421 CCGTGTGTCTAGCATTACTCGT 60.159 50.000 0.00 0.00 0.00 4.18
241 247 2.846550 CGTGTGTCTAGCATTACTCGTG 59.153 50.000 0.00 0.00 0.00 4.35
242 248 2.599082 GTGTGTCTAGCATTACTCGTGC 59.401 50.000 0.00 0.00 42.81 5.34
301 307 7.549147 TTTTGCTATAATATACTCCCTCCGT 57.451 36.000 0.00 0.00 0.00 4.69
302 308 7.549147 TTTGCTATAATATACTCCCTCCGTT 57.451 36.000 0.00 0.00 0.00 4.44
303 309 6.770746 TGCTATAATATACTCCCTCCGTTC 57.229 41.667 0.00 0.00 0.00 3.95
304 310 5.655532 TGCTATAATATACTCCCTCCGTTCC 59.344 44.000 0.00 0.00 0.00 3.62
305 311 5.892686 GCTATAATATACTCCCTCCGTTCCT 59.107 44.000 0.00 0.00 0.00 3.36
306 312 7.059156 GCTATAATATACTCCCTCCGTTCCTA 58.941 42.308 0.00 0.00 0.00 2.94
307 313 7.559170 GCTATAATATACTCCCTCCGTTCCTAA 59.441 40.741 0.00 0.00 0.00 2.69
308 314 9.471702 CTATAATATACTCCCTCCGTTCCTAAA 57.528 37.037 0.00 0.00 0.00 1.85
309 315 8.912614 ATAATATACTCCCTCCGTTCCTAAAT 57.087 34.615 0.00 0.00 0.00 1.40
311 317 7.715266 ATATACTCCCTCCGTTCCTAAATAC 57.285 40.000 0.00 0.00 0.00 1.89
312 318 3.991683 ACTCCCTCCGTTCCTAAATACT 58.008 45.455 0.00 0.00 0.00 2.12
313 319 4.359996 ACTCCCTCCGTTCCTAAATACTT 58.640 43.478 0.00 0.00 0.00 2.24
314 320 4.161754 ACTCCCTCCGTTCCTAAATACTTG 59.838 45.833 0.00 0.00 0.00 3.16
315 321 4.098894 TCCCTCCGTTCCTAAATACTTGT 58.901 43.478 0.00 0.00 0.00 3.16
316 322 4.161001 TCCCTCCGTTCCTAAATACTTGTC 59.839 45.833 0.00 0.00 0.00 3.18
317 323 4.161754 CCCTCCGTTCCTAAATACTTGTCT 59.838 45.833 0.00 0.00 0.00 3.41
318 324 5.338137 CCCTCCGTTCCTAAATACTTGTCTT 60.338 44.000 0.00 0.00 0.00 3.01
319 325 6.171213 CCTCCGTTCCTAAATACTTGTCTTT 58.829 40.000 0.00 0.00 0.00 2.52
320 326 6.653740 CCTCCGTTCCTAAATACTTGTCTTTT 59.346 38.462 0.00 0.00 0.00 2.27
321 327 7.174426 CCTCCGTTCCTAAATACTTGTCTTTTT 59.826 37.037 0.00 0.00 0.00 1.94
322 328 9.211485 CTCCGTTCCTAAATACTTGTCTTTTTA 57.789 33.333 0.00 0.00 0.00 1.52
323 329 9.211485 TCCGTTCCTAAATACTTGTCTTTTTAG 57.789 33.333 0.00 0.00 33.47 1.85
324 330 8.448615 CCGTTCCTAAATACTTGTCTTTTTAGG 58.551 37.037 12.11 12.11 46.30 2.69
325 331 7.961283 CGTTCCTAAATACTTGTCTTTTTAGGC 59.039 37.037 13.09 3.06 45.31 3.93
326 332 8.789762 GTTCCTAAATACTTGTCTTTTTAGGCA 58.210 33.333 13.09 2.93 45.31 4.75
327 333 9.528489 TTCCTAAATACTTGTCTTTTTAGGCAT 57.472 29.630 13.09 0.00 45.31 4.40
328 334 9.528489 TCCTAAATACTTGTCTTTTTAGGCATT 57.472 29.630 13.09 0.00 45.31 3.56
335 341 8.369218 ACTTGTCTTTTTAGGCATTTCAAATG 57.631 30.769 5.68 5.68 0.00 2.32
336 342 7.442062 ACTTGTCTTTTTAGGCATTTCAAATGG 59.558 33.333 12.14 0.00 0.00 3.16
337 343 7.060383 TGTCTTTTTAGGCATTTCAAATGGA 57.940 32.000 12.14 0.00 0.00 3.41
338 344 6.928492 TGTCTTTTTAGGCATTTCAAATGGAC 59.072 34.615 12.14 8.23 0.00 4.02
339 345 7.154656 GTCTTTTTAGGCATTTCAAATGGACT 58.845 34.615 12.14 3.08 0.00 3.85
340 346 7.329471 GTCTTTTTAGGCATTTCAAATGGACTC 59.671 37.037 12.14 0.00 0.00 3.36
341 347 6.662865 TTTTAGGCATTTCAAATGGACTCA 57.337 33.333 12.14 0.00 0.00 3.41
342 348 6.662865 TTTAGGCATTTCAAATGGACTCAA 57.337 33.333 12.14 0.00 0.00 3.02
343 349 4.525912 AGGCATTTCAAATGGACTCAAC 57.474 40.909 12.14 0.00 0.00 3.18
344 350 3.896888 AGGCATTTCAAATGGACTCAACA 59.103 39.130 12.14 0.00 0.00 3.33
345 351 4.529377 AGGCATTTCAAATGGACTCAACAT 59.471 37.500 12.14 0.00 0.00 2.71
346 352 5.716228 AGGCATTTCAAATGGACTCAACATA 59.284 36.000 12.14 0.00 0.00 2.29
347 353 5.807011 GGCATTTCAAATGGACTCAACATAC 59.193 40.000 12.14 0.00 0.00 2.39
348 354 5.512788 GCATTTCAAATGGACTCAACATACG 59.487 40.000 12.14 0.00 0.00 3.06
349 355 5.621197 TTTCAAATGGACTCAACATACGG 57.379 39.130 0.00 0.00 0.00 4.02
350 356 4.545208 TCAAATGGACTCAACATACGGA 57.455 40.909 0.00 0.00 0.00 4.69
351 357 5.097742 TCAAATGGACTCAACATACGGAT 57.902 39.130 0.00 0.00 0.00 4.18
352 358 6.228616 TCAAATGGACTCAACATACGGATA 57.771 37.500 0.00 0.00 0.00 2.59
353 359 6.826668 TCAAATGGACTCAACATACGGATAT 58.173 36.000 0.00 0.00 0.00 1.63
354 360 7.958088 TCAAATGGACTCAACATACGGATATA 58.042 34.615 0.00 0.00 0.00 0.86
355 361 8.593679 TCAAATGGACTCAACATACGGATATAT 58.406 33.333 0.00 0.00 0.00 0.86
356 362 8.659491 CAAATGGACTCAACATACGGATATATG 58.341 37.037 0.00 0.00 38.34 1.78
357 363 6.911250 TGGACTCAACATACGGATATATGT 57.089 37.500 0.00 0.00 45.69 2.29
358 364 8.589701 ATGGACTCAACATACGGATATATGTA 57.410 34.615 0.00 0.00 43.50 2.29
359 365 8.051901 TGGACTCAACATACGGATATATGTAG 57.948 38.462 0.00 0.00 43.50 2.74
360 366 7.886446 TGGACTCAACATACGGATATATGTAGA 59.114 37.037 0.00 0.00 43.50 2.59
361 367 8.182881 GGACTCAACATACGGATATATGTAGAC 58.817 40.741 0.00 0.00 43.50 2.59
362 368 8.631480 ACTCAACATACGGATATATGTAGACA 57.369 34.615 0.00 0.00 43.50 3.41
363 369 9.244292 ACTCAACATACGGATATATGTAGACAT 57.756 33.333 0.08 0.08 43.50 3.06
392 398 9.677567 TTTAAAGTGTAGATTCACTCATTTTGC 57.322 29.630 0.00 0.00 46.25 3.68
393 399 5.536554 AGTGTAGATTCACTCATTTTGCG 57.463 39.130 0.00 0.00 44.07 4.85
394 400 4.091424 GTGTAGATTCACTCATTTTGCGC 58.909 43.478 0.00 0.00 35.68 6.09
395 401 2.927553 AGATTCACTCATTTTGCGCC 57.072 45.000 4.18 0.00 0.00 6.53
396 402 1.131126 AGATTCACTCATTTTGCGCCG 59.869 47.619 4.18 0.00 0.00 6.46
397 403 0.881118 ATTCACTCATTTTGCGCCGT 59.119 45.000 4.18 0.00 0.00 5.68
398 404 1.514003 TTCACTCATTTTGCGCCGTA 58.486 45.000 4.18 0.00 0.00 4.02
399 405 1.732941 TCACTCATTTTGCGCCGTAT 58.267 45.000 4.18 0.00 0.00 3.06
400 406 1.396648 TCACTCATTTTGCGCCGTATG 59.603 47.619 4.18 5.63 0.00 2.39
401 407 1.130373 CACTCATTTTGCGCCGTATGT 59.870 47.619 4.18 0.00 0.00 2.29
402 408 2.350192 CACTCATTTTGCGCCGTATGTA 59.650 45.455 4.18 0.00 0.00 2.29
403 409 2.607635 ACTCATTTTGCGCCGTATGTAG 59.392 45.455 4.18 7.56 0.00 2.74
404 410 2.607635 CTCATTTTGCGCCGTATGTAGT 59.392 45.455 4.18 0.00 0.00 2.73
405 411 2.605818 TCATTTTGCGCCGTATGTAGTC 59.394 45.455 4.18 0.00 0.00 2.59
406 412 2.081725 TTTTGCGCCGTATGTAGTCA 57.918 45.000 4.18 0.00 0.00 3.41
407 413 1.352114 TTTGCGCCGTATGTAGTCAC 58.648 50.000 4.18 0.00 0.00 3.67
408 414 0.528924 TTGCGCCGTATGTAGTCACT 59.471 50.000 4.18 0.00 0.00 3.41
409 415 0.528924 TGCGCCGTATGTAGTCACTT 59.471 50.000 4.18 0.00 0.00 3.16
410 416 0.921347 GCGCCGTATGTAGTCACTTG 59.079 55.000 0.00 0.00 0.00 3.16
411 417 1.734707 GCGCCGTATGTAGTCACTTGT 60.735 52.381 0.00 0.00 0.00 3.16
412 418 2.602878 CGCCGTATGTAGTCACTTGTT 58.397 47.619 0.00 0.00 0.00 2.83
413 419 3.761657 CGCCGTATGTAGTCACTTGTTA 58.238 45.455 0.00 0.00 0.00 2.41
414 420 4.168014 CGCCGTATGTAGTCACTTGTTAA 58.832 43.478 0.00 0.00 0.00 2.01
415 421 4.622313 CGCCGTATGTAGTCACTTGTTAAA 59.378 41.667 0.00 0.00 0.00 1.52
416 422 5.118971 CGCCGTATGTAGTCACTTGTTAAAA 59.881 40.000 0.00 0.00 0.00 1.52
417 423 6.183360 CGCCGTATGTAGTCACTTGTTAAAAT 60.183 38.462 0.00 0.00 0.00 1.82
418 424 7.178074 GCCGTATGTAGTCACTTGTTAAAATC 58.822 38.462 0.00 0.00 0.00 2.17
419 425 7.064253 GCCGTATGTAGTCACTTGTTAAAATCT 59.936 37.037 0.00 0.00 0.00 2.40
420 426 8.592998 CCGTATGTAGTCACTTGTTAAAATCTC 58.407 37.037 0.00 0.00 0.00 2.75
421 427 9.355215 CGTATGTAGTCACTTGTTAAAATCTCT 57.645 33.333 0.00 0.00 0.00 3.10
444 450 9.291664 CTCTAGAAAGACAAGTATTTAGGAACG 57.708 37.037 0.00 0.00 0.00 3.95
445 451 8.248945 TCTAGAAAGACAAGTATTTAGGAACGG 58.751 37.037 0.00 0.00 0.00 4.44
446 452 7.001099 AGAAAGACAAGTATTTAGGAACGGA 57.999 36.000 0.00 0.00 0.00 4.69
447 453 7.097834 AGAAAGACAAGTATTTAGGAACGGAG 58.902 38.462 0.00 0.00 0.00 4.63
448 454 5.340439 AGACAAGTATTTAGGAACGGAGG 57.660 43.478 0.00 0.00 0.00 4.30
449 455 4.161754 AGACAAGTATTTAGGAACGGAGGG 59.838 45.833 0.00 0.00 0.00 4.30
450 456 4.098894 ACAAGTATTTAGGAACGGAGGGA 58.901 43.478 0.00 0.00 0.00 4.20
451 457 4.161754 ACAAGTATTTAGGAACGGAGGGAG 59.838 45.833 0.00 0.00 0.00 4.30
471 477 3.239449 AGTACATGAGACTGGTCCAACA 58.761 45.455 0.00 0.00 0.00 3.33
516 523 0.468226 TGACTGGTCCAACAGGTGAC 59.532 55.000 0.00 0.00 42.75 3.67
831 849 4.574674 ATCATTGCTGTCCCAGAAACTA 57.425 40.909 0.00 0.00 31.08 2.24
910 928 5.073311 TCTTTATCACTTCCGAGTTCCAG 57.927 43.478 0.00 0.00 32.54 3.86
1082 1110 2.751036 CCACCATGTCGCCATGCA 60.751 61.111 0.00 0.00 45.90 3.96
1089 1117 2.515523 GTCGCCATGCAGCTCCAT 60.516 61.111 0.00 0.00 0.00 3.41
1128 1160 5.317733 ACTACTAGTGCTTACTGCTTCAG 57.682 43.478 5.39 0.00 43.37 3.02
1135 1167 0.247736 CTTACTGCTTCAGCTCCGGT 59.752 55.000 0.00 0.00 42.66 5.28
1136 1168 0.037326 TTACTGCTTCAGCTCCGGTG 60.037 55.000 0.00 0.00 42.66 4.94
1137 1169 2.507110 TACTGCTTCAGCTCCGGTGC 62.507 60.000 20.71 20.71 42.66 5.01
1138 1170 4.704833 TGCTTCAGCTCCGGTGCC 62.705 66.667 24.18 9.60 42.66 5.01
1139 1171 4.400961 GCTTCAGCTCCGGTGCCT 62.401 66.667 24.18 9.52 38.21 4.75
1140 1172 3.019003 GCTTCAGCTCCGGTGCCTA 62.019 63.158 24.18 10.43 38.21 3.93
1141 1173 1.142748 CTTCAGCTCCGGTGCCTAG 59.857 63.158 24.18 14.80 0.00 3.02
1142 1174 1.304962 TTCAGCTCCGGTGCCTAGA 60.305 57.895 24.18 16.68 0.00 2.43
1151 1183 1.883275 CCGGTGCCTAGAGAGACTATG 59.117 57.143 0.00 0.00 0.00 2.23
1158 1190 3.438781 GCCTAGAGAGACTATGGATCGTG 59.561 52.174 0.00 0.00 0.00 4.35
1166 1198 6.010850 AGAGACTATGGATCGTGCCTAATAA 58.989 40.000 0.00 0.00 0.00 1.40
1255 1289 2.755876 TGCGAGGTCTCTGCGGAT 60.756 61.111 0.00 0.00 33.89 4.18
1453 1494 7.837202 AACTTATTTCCATGAAACATGCATG 57.163 32.000 25.09 25.09 42.07 4.06
1456 1497 1.855295 TCCATGAAACATGCATGCCT 58.145 45.000 26.53 13.66 41.30 4.75
1459 1500 2.545113 CCATGAAACATGCATGCCTAGC 60.545 50.000 26.53 11.88 41.30 3.42
1485 1526 4.816385 CCATGTTCATGCGGTTCTTAGTAT 59.184 41.667 7.21 0.00 0.00 2.12
1488 1529 5.348986 TGTTCATGCGGTTCTTAGTATCTC 58.651 41.667 0.00 0.00 0.00 2.75
1496 1537 5.107375 GCGGTTCTTAGTATCTCTCTACTCG 60.107 48.000 0.00 0.00 33.96 4.18
1516 1560 6.890558 ACTCGATCTATACTCGCTTTCTAAC 58.109 40.000 0.00 0.00 36.11 2.34
1617 1661 0.474184 AGGTGTGGTTCCAGAACAGG 59.526 55.000 12.32 0.00 42.85 4.00
1634 1678 1.299316 GGCGCGCAAGGTACGTATA 60.299 57.895 34.42 0.00 38.28 1.47
1711 1755 2.722071 GATCGGTGATCAGAACGAGTC 58.278 52.381 18.15 13.11 38.77 3.36
1722 1766 2.095466 CAGAACGAGTCCTCAGTCTGTC 60.095 54.545 12.71 0.00 0.00 3.51
1978 2023 5.351465 ACAACAACAACAACAACAACAACAA 59.649 32.000 0.00 0.00 0.00 2.83
1980 2025 4.870426 ACAACAACAACAACAACAACAACA 59.130 33.333 0.00 0.00 0.00 3.33
1981 2026 5.351465 ACAACAACAACAACAACAACAACAA 59.649 32.000 0.00 0.00 0.00 2.83
1982 2027 5.396750 ACAACAACAACAACAACAACAAC 57.603 34.783 0.00 0.00 0.00 3.32
1983 2028 4.870426 ACAACAACAACAACAACAACAACA 59.130 33.333 0.00 0.00 0.00 3.33
1984 2029 5.351465 ACAACAACAACAACAACAACAACAA 59.649 32.000 0.00 0.00 0.00 2.83
1985 2030 5.396750 ACAACAACAACAACAACAACAAC 57.603 34.783 0.00 0.00 0.00 3.32
1986 2031 4.870426 ACAACAACAACAACAACAACAACA 59.130 33.333 0.00 0.00 0.00 3.33
1987 2032 5.351465 ACAACAACAACAACAACAACAACAA 59.649 32.000 0.00 0.00 0.00 2.83
1992 2037 4.870426 ACAACAACAACAACAACAACAACA 59.130 33.333 0.00 0.00 0.00 3.33
1997 2042 0.455295 ACAACAACAACAACACCGCG 60.455 50.000 0.00 0.00 0.00 6.46
2087 2142 3.253416 GACCGATCGACAACCTAGC 57.747 57.895 18.66 0.00 0.00 3.42
2088 2143 0.248949 GACCGATCGACAACCTAGCC 60.249 60.000 18.66 0.00 0.00 3.93
2089 2144 0.968901 ACCGATCGACAACCTAGCCA 60.969 55.000 18.66 0.00 0.00 4.75
2093 2148 0.537188 ATCGACAACCTAGCCACCAG 59.463 55.000 0.00 0.00 0.00 4.00
2094 2149 1.741770 CGACAACCTAGCCACCAGC 60.742 63.158 0.00 0.00 44.25 4.85
2129 2187 0.601558 ACAGTAGGCAGTACACCGTG 59.398 55.000 0.00 0.00 33.55 4.94
2130 2188 0.736325 CAGTAGGCAGTACACCGTGC 60.736 60.000 0.00 0.00 39.08 5.34
2157 2215 4.794169 ACCAACAGTTTCGCACATTTATC 58.206 39.130 0.00 0.00 0.00 1.75
2176 2234 3.286751 GCGCAAGACTGTTGCCCA 61.287 61.111 0.30 0.00 42.10 5.36
2197 2255 2.993899 ACGCTCGATCGTTCTGAATTTT 59.006 40.909 15.94 0.00 40.07 1.82
2198 2256 3.432252 ACGCTCGATCGTTCTGAATTTTT 59.568 39.130 15.94 0.00 40.07 1.94
2534 2600 6.092396 GTCTCCAGAAAGCATGCATATATCTG 59.908 42.308 21.98 21.56 34.15 2.90
2564 2630 4.829064 TGCAAAGTGTTGTTCCATAGTC 57.171 40.909 0.00 0.00 37.06 2.59
2602 2668 9.153721 CGTATGTACCTAATTTAAAGTGGTTCA 57.846 33.333 12.65 13.41 33.81 3.18
2622 2688 6.038271 GGTTCAGTTATCCGCTTATCATTTGT 59.962 38.462 0.00 0.00 0.00 2.83
2669 2737 1.434622 GCCACCGACTACTCGATCGA 61.435 60.000 18.32 18.32 43.06 3.59
2670 2738 1.227639 CCACCGACTACTCGATCGAT 58.772 55.000 19.78 11.36 43.06 3.59
2671 2739 1.194997 CCACCGACTACTCGATCGATC 59.805 57.143 19.78 15.68 43.06 3.69
2692 2760 3.322541 TCGTGGACTGGACAATCAAACTA 59.677 43.478 0.00 0.00 0.00 2.24
2758 2826 4.442612 GGATGACTAGATGTGCATGTCAGT 60.443 45.833 0.00 0.00 40.32 3.41
2797 2865 3.365969 GGAAATGGCACCTTACTTGTTCG 60.366 47.826 0.00 0.00 0.00 3.95
2829 2897 0.468226 TTTCACGTTGCTCTCAGGGT 59.532 50.000 0.00 0.00 0.00 4.34
2848 2916 0.674269 TCACGACGCCATAAAACCCC 60.674 55.000 0.00 0.00 0.00 4.95
2969 3039 4.527509 ACTACTTATCATGCCATCTCCG 57.472 45.455 0.00 0.00 0.00 4.63
3006 3077 1.552337 AGCATCAGTCGGTGTCATCTT 59.448 47.619 0.00 0.00 0.00 2.40
3051 3122 2.859165 TCTTCCCATGTGTCCAACTC 57.141 50.000 0.00 0.00 0.00 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.351726 CGGTTTATGTGCACTCTTAGCC 59.648 50.000 19.41 11.83 0.00 3.93
1 2 2.351726 CCGGTTTATGTGCACTCTTAGC 59.648 50.000 19.41 9.65 0.00 3.09
2 3 3.596214 ACCGGTTTATGTGCACTCTTAG 58.404 45.455 19.41 3.58 0.00 2.18
63 69 9.078990 TCACTGATTATCCGTGAATCTAGTATT 57.921 33.333 15.28 0.00 34.99 1.89
64 70 8.516234 GTCACTGATTATCCGTGAATCTAGTAT 58.484 37.037 18.37 0.00 39.16 2.12
65 71 7.307811 CGTCACTGATTATCCGTGAATCTAGTA 60.308 40.741 18.37 0.00 39.16 1.82
66 72 6.513556 CGTCACTGATTATCCGTGAATCTAGT 60.514 42.308 18.37 0.00 39.16 2.57
67 73 5.853810 CGTCACTGATTATCCGTGAATCTAG 59.146 44.000 18.37 6.92 39.16 2.43
68 74 5.278315 CCGTCACTGATTATCCGTGAATCTA 60.278 44.000 18.37 0.00 39.16 1.98
69 75 4.499865 CCGTCACTGATTATCCGTGAATCT 60.500 45.833 18.37 0.00 39.16 2.40
70 76 3.736252 CCGTCACTGATTATCCGTGAATC 59.264 47.826 18.37 8.58 39.16 2.52
71 77 3.383505 TCCGTCACTGATTATCCGTGAAT 59.616 43.478 18.37 0.00 39.16 2.57
72 78 2.756207 TCCGTCACTGATTATCCGTGAA 59.244 45.455 18.37 3.83 39.16 3.18
73 79 2.371306 TCCGTCACTGATTATCCGTGA 58.629 47.619 13.97 13.97 35.49 4.35
74 80 2.863401 TCCGTCACTGATTATCCGTG 57.137 50.000 9.94 9.94 0.00 4.94
75 81 4.402056 AATTCCGTCACTGATTATCCGT 57.598 40.909 0.00 0.00 0.00 4.69
76 82 4.808895 TGAAATTCCGTCACTGATTATCCG 59.191 41.667 0.00 0.00 0.00 4.18
77 83 5.276868 CGTGAAATTCCGTCACTGATTATCC 60.277 44.000 7.07 0.00 42.68 2.59
78 84 5.276868 CCGTGAAATTCCGTCACTGATTATC 60.277 44.000 7.07 0.00 42.68 1.75
79 85 4.570772 CCGTGAAATTCCGTCACTGATTAT 59.429 41.667 7.07 0.00 42.68 1.28
80 86 3.930229 CCGTGAAATTCCGTCACTGATTA 59.070 43.478 7.07 0.00 42.68 1.75
81 87 2.742053 CCGTGAAATTCCGTCACTGATT 59.258 45.455 7.07 0.00 42.68 2.57
82 88 2.028476 TCCGTGAAATTCCGTCACTGAT 60.028 45.455 7.07 0.00 42.68 2.90
83 89 1.341852 TCCGTGAAATTCCGTCACTGA 59.658 47.619 7.07 3.71 42.68 3.41
84 90 1.459592 GTCCGTGAAATTCCGTCACTG 59.540 52.381 7.07 1.65 42.68 3.66
85 91 1.069513 TGTCCGTGAAATTCCGTCACT 59.930 47.619 7.07 0.00 42.68 3.41
86 92 1.193874 GTGTCCGTGAAATTCCGTCAC 59.806 52.381 0.00 0.00 41.66 3.67
87 93 1.202545 TGTGTCCGTGAAATTCCGTCA 60.203 47.619 0.00 0.00 0.00 4.35
88 94 1.459592 CTGTGTCCGTGAAATTCCGTC 59.540 52.381 0.00 0.00 0.00 4.79
89 95 1.508632 CTGTGTCCGTGAAATTCCGT 58.491 50.000 0.00 0.00 0.00 4.69
90 96 0.796312 CCTGTGTCCGTGAAATTCCG 59.204 55.000 0.00 0.00 0.00 4.30
91 97 1.535462 CACCTGTGTCCGTGAAATTCC 59.465 52.381 0.00 0.00 31.36 3.01
92 98 1.069227 GCACCTGTGTCCGTGAAATTC 60.069 52.381 0.00 0.00 31.36 2.17
93 99 0.951558 GCACCTGTGTCCGTGAAATT 59.048 50.000 0.00 0.00 31.36 1.82
94 100 1.227999 CGCACCTGTGTCCGTGAAAT 61.228 55.000 0.00 0.00 31.36 2.17
95 101 1.885388 CGCACCTGTGTCCGTGAAA 60.885 57.895 0.00 0.00 31.36 2.69
96 102 2.279851 CGCACCTGTGTCCGTGAA 60.280 61.111 0.00 0.00 31.36 3.18
97 103 2.964438 GAACGCACCTGTGTCCGTGA 62.964 60.000 4.19 0.00 37.87 4.35
98 104 2.587753 AACGCACCTGTGTCCGTG 60.588 61.111 4.19 0.00 37.87 4.94
99 105 2.279918 GAACGCACCTGTGTCCGT 60.280 61.111 0.00 0.00 37.87 4.69
100 106 3.041940 GGAACGCACCTGTGTCCG 61.042 66.667 0.00 0.00 37.87 4.79
101 107 2.668550 GGGAACGCACCTGTGTCC 60.669 66.667 0.00 0.00 37.87 4.02
102 108 1.668151 GAGGGAACGCACCTGTGTC 60.668 63.158 0.00 0.00 38.79 3.67
103 109 2.426023 GAGGGAACGCACCTGTGT 59.574 61.111 0.00 0.00 38.79 3.72
104 110 2.358737 GGAGGGAACGCACCTGTG 60.359 66.667 0.00 0.00 38.79 3.66
105 111 2.526873 AGGAGGGAACGCACCTGT 60.527 61.111 7.00 0.00 38.79 4.00
106 112 0.970937 TAGAGGAGGGAACGCACCTG 60.971 60.000 11.78 0.00 38.79 4.00
107 113 0.252103 TTAGAGGAGGGAACGCACCT 60.252 55.000 7.46 7.46 42.18 4.00
108 114 0.831307 ATTAGAGGAGGGAACGCACC 59.169 55.000 0.00 0.00 0.00 5.01
109 115 2.280628 CAATTAGAGGAGGGAACGCAC 58.719 52.381 0.00 0.00 0.00 5.34
110 116 1.406887 GCAATTAGAGGAGGGAACGCA 60.407 52.381 0.00 0.00 0.00 5.24
111 117 1.300481 GCAATTAGAGGAGGGAACGC 58.700 55.000 0.00 0.00 0.00 4.84
112 118 1.475213 GGGCAATTAGAGGAGGGAACG 60.475 57.143 0.00 0.00 0.00 3.95
113 119 1.133761 GGGGCAATTAGAGGAGGGAAC 60.134 57.143 0.00 0.00 0.00 3.62
114 120 1.222567 GGGGCAATTAGAGGAGGGAA 58.777 55.000 0.00 0.00 0.00 3.97
115 121 0.697854 GGGGGCAATTAGAGGAGGGA 60.698 60.000 0.00 0.00 0.00 4.20
116 122 1.846973 GGGGGCAATTAGAGGAGGG 59.153 63.158 0.00 0.00 0.00 4.30
131 137 2.701951 CCCATCAATGAAAATCAGGGGG 59.298 50.000 0.00 0.00 0.00 5.40
132 138 2.103601 GCCCATCAATGAAAATCAGGGG 59.896 50.000 0.00 0.00 35.58 4.79
133 139 2.103601 GGCCCATCAATGAAAATCAGGG 59.896 50.000 0.00 0.00 38.10 4.45
134 140 2.103601 GGGCCCATCAATGAAAATCAGG 59.896 50.000 19.95 0.00 0.00 3.86
135 141 2.767394 TGGGCCCATCAATGAAAATCAG 59.233 45.455 24.45 0.00 0.00 2.90
136 142 2.500910 GTGGGCCCATCAATGAAAATCA 59.499 45.455 31.45 0.00 0.00 2.57
137 143 2.158914 GGTGGGCCCATCAATGAAAATC 60.159 50.000 31.20 11.23 0.00 2.17
138 144 1.839354 GGTGGGCCCATCAATGAAAAT 59.161 47.619 31.20 0.00 0.00 1.82
139 145 1.203288 AGGTGGGCCCATCAATGAAAA 60.203 47.619 36.54 1.62 34.66 2.29
140 146 0.413037 AGGTGGGCCCATCAATGAAA 59.587 50.000 36.54 2.52 34.66 2.69
141 147 0.033208 GAGGTGGGCCCATCAATGAA 60.033 55.000 36.54 3.42 34.66 2.57
142 148 1.213619 TGAGGTGGGCCCATCAATGA 61.214 55.000 36.54 14.29 34.66 2.57
143 149 1.039233 GTGAGGTGGGCCCATCAATG 61.039 60.000 36.54 0.00 34.66 2.82
144 150 1.217057 AGTGAGGTGGGCCCATCAAT 61.217 55.000 36.54 27.84 34.66 2.57
145 151 1.434513 AAGTGAGGTGGGCCCATCAA 61.435 55.000 36.54 21.75 34.66 2.57
146 152 0.548926 TAAGTGAGGTGGGCCCATCA 60.549 55.000 36.54 28.95 34.66 3.07
147 153 0.623723 TTAAGTGAGGTGGGCCCATC 59.376 55.000 31.45 30.25 34.66 3.51
148 154 1.308877 ATTAAGTGAGGTGGGCCCAT 58.691 50.000 31.45 14.17 34.66 4.00
149 155 1.080638 AATTAAGTGAGGTGGGCCCA 58.919 50.000 24.45 24.45 34.66 5.36
150 156 3.375647 TTAATTAAGTGAGGTGGGCCC 57.624 47.619 17.59 17.59 34.57 5.80
151 157 3.446161 GGTTTAATTAAGTGAGGTGGGCC 59.554 47.826 0.00 0.00 0.00 5.80
152 158 4.341487 AGGTTTAATTAAGTGAGGTGGGC 58.659 43.478 0.00 0.00 0.00 5.36
153 159 7.094075 GGTTAAGGTTTAATTAAGTGAGGTGGG 60.094 40.741 0.00 0.00 0.00 4.61
154 160 7.449086 TGGTTAAGGTTTAATTAAGTGAGGTGG 59.551 37.037 0.00 0.00 0.00 4.61
155 161 8.398878 TGGTTAAGGTTTAATTAAGTGAGGTG 57.601 34.615 0.00 0.00 0.00 4.00
156 162 8.999905 TTGGTTAAGGTTTAATTAAGTGAGGT 57.000 30.769 0.00 0.00 0.00 3.85
169 175 9.320295 TGATTAGGATTTGATTGGTTAAGGTTT 57.680 29.630 0.00 0.00 0.00 3.27
170 176 8.749354 GTGATTAGGATTTGATTGGTTAAGGTT 58.251 33.333 0.00 0.00 0.00 3.50
171 177 7.342026 GGTGATTAGGATTTGATTGGTTAAGGT 59.658 37.037 0.00 0.00 0.00 3.50
172 178 7.201911 GGGTGATTAGGATTTGATTGGTTAAGG 60.202 40.741 0.00 0.00 0.00 2.69
173 179 7.341769 TGGGTGATTAGGATTTGATTGGTTAAG 59.658 37.037 0.00 0.00 0.00 1.85
174 180 7.185565 TGGGTGATTAGGATTTGATTGGTTAA 58.814 34.615 0.00 0.00 0.00 2.01
175 181 6.736581 TGGGTGATTAGGATTTGATTGGTTA 58.263 36.000 0.00 0.00 0.00 2.85
176 182 5.588845 TGGGTGATTAGGATTTGATTGGTT 58.411 37.500 0.00 0.00 0.00 3.67
177 183 5.203528 CTGGGTGATTAGGATTTGATTGGT 58.796 41.667 0.00 0.00 0.00 3.67
178 184 5.203528 ACTGGGTGATTAGGATTTGATTGG 58.796 41.667 0.00 0.00 0.00 3.16
179 185 7.880160 TTACTGGGTGATTAGGATTTGATTG 57.120 36.000 0.00 0.00 0.00 2.67
180 186 9.136323 GATTTACTGGGTGATTAGGATTTGATT 57.864 33.333 0.00 0.00 0.00 2.57
181 187 7.725844 GGATTTACTGGGTGATTAGGATTTGAT 59.274 37.037 0.00 0.00 0.00 2.57
182 188 7.060421 GGATTTACTGGGTGATTAGGATTTGA 58.940 38.462 0.00 0.00 0.00 2.69
183 189 6.265422 GGGATTTACTGGGTGATTAGGATTTG 59.735 42.308 0.00 0.00 0.00 2.32
184 190 6.373759 GGGATTTACTGGGTGATTAGGATTT 58.626 40.000 0.00 0.00 0.00 2.17
185 191 5.162980 GGGGATTTACTGGGTGATTAGGATT 60.163 44.000 0.00 0.00 0.00 3.01
186 192 4.354087 GGGGATTTACTGGGTGATTAGGAT 59.646 45.833 0.00 0.00 0.00 3.24
187 193 3.720002 GGGGATTTACTGGGTGATTAGGA 59.280 47.826 0.00 0.00 0.00 2.94
188 194 3.181433 GGGGGATTTACTGGGTGATTAGG 60.181 52.174 0.00 0.00 0.00 2.69
189 195 3.496160 CGGGGGATTTACTGGGTGATTAG 60.496 52.174 0.00 0.00 0.00 1.73
190 196 2.440253 CGGGGGATTTACTGGGTGATTA 59.560 50.000 0.00 0.00 0.00 1.75
191 197 1.214424 CGGGGGATTTACTGGGTGATT 59.786 52.381 0.00 0.00 0.00 2.57
192 198 0.843984 CGGGGGATTTACTGGGTGAT 59.156 55.000 0.00 0.00 0.00 3.06
193 199 0.548197 ACGGGGGATTTACTGGGTGA 60.548 55.000 0.00 0.00 0.00 4.02
194 200 1.205966 TACGGGGGATTTACTGGGTG 58.794 55.000 0.00 0.00 0.00 4.61
195 201 1.561076 GTTACGGGGGATTTACTGGGT 59.439 52.381 0.00 0.00 0.00 4.51
196 202 1.560611 TGTTACGGGGGATTTACTGGG 59.439 52.381 0.00 0.00 0.00 4.45
197 203 2.237893 ACTGTTACGGGGGATTTACTGG 59.762 50.000 0.00 0.00 0.00 4.00
198 204 3.528532 GACTGTTACGGGGGATTTACTG 58.471 50.000 0.00 0.00 0.00 2.74
199 205 2.502947 GGACTGTTACGGGGGATTTACT 59.497 50.000 0.00 0.00 0.00 2.24
200 206 2.739609 CGGACTGTTACGGGGGATTTAC 60.740 54.545 0.00 0.00 0.00 2.01
201 207 1.481772 CGGACTGTTACGGGGGATTTA 59.518 52.381 0.00 0.00 0.00 1.40
202 208 0.251073 CGGACTGTTACGGGGGATTT 59.749 55.000 0.00 0.00 0.00 2.17
203 209 0.906282 ACGGACTGTTACGGGGGATT 60.906 55.000 9.91 0.00 0.00 3.01
204 210 1.305549 ACGGACTGTTACGGGGGAT 60.306 57.895 9.91 0.00 0.00 3.85
205 211 2.118076 ACGGACTGTTACGGGGGA 59.882 61.111 9.91 0.00 0.00 4.81
206 212 2.263540 CACGGACTGTTACGGGGG 59.736 66.667 9.91 0.00 0.00 5.40
207 213 1.373748 CACACGGACTGTTACGGGG 60.374 63.158 11.70 5.89 37.93 5.73
208 214 0.665369 GACACACGGACTGTTACGGG 60.665 60.000 6.55 6.55 39.87 5.28
209 215 0.313043 AGACACACGGACTGTTACGG 59.687 55.000 9.91 0.00 0.00 4.02
210 216 2.847901 CTAGACACACGGACTGTTACG 58.152 52.381 4.63 4.63 0.00 3.18
211 217 2.030540 TGCTAGACACACGGACTGTTAC 60.031 50.000 0.00 0.00 0.00 2.50
212 218 2.232399 TGCTAGACACACGGACTGTTA 58.768 47.619 0.00 0.00 0.00 2.41
213 219 1.037493 TGCTAGACACACGGACTGTT 58.963 50.000 0.00 0.00 0.00 3.16
214 220 1.257743 ATGCTAGACACACGGACTGT 58.742 50.000 0.00 0.00 0.00 3.55
215 221 2.370281 AATGCTAGACACACGGACTG 57.630 50.000 0.00 0.00 0.00 3.51
216 222 3.090037 AGTAATGCTAGACACACGGACT 58.910 45.455 0.00 0.00 0.00 3.85
217 223 3.436496 GAGTAATGCTAGACACACGGAC 58.564 50.000 0.00 0.00 0.00 4.79
218 224 2.096980 CGAGTAATGCTAGACACACGGA 59.903 50.000 0.00 0.00 0.00 4.69
219 225 2.159421 ACGAGTAATGCTAGACACACGG 60.159 50.000 0.00 0.00 0.00 4.94
220 226 2.846550 CACGAGTAATGCTAGACACACG 59.153 50.000 0.00 0.00 0.00 4.49
221 227 2.599082 GCACGAGTAATGCTAGACACAC 59.401 50.000 0.00 0.00 40.08 3.82
222 228 2.876091 GCACGAGTAATGCTAGACACA 58.124 47.619 0.00 0.00 40.08 3.72
230 236 5.902681 TCCCATATATAGCACGAGTAATGC 58.097 41.667 0.00 0.00 43.74 3.56
231 237 7.320399 TGTTCCCATATATAGCACGAGTAATG 58.680 38.462 0.00 0.00 0.00 1.90
232 238 7.476540 TGTTCCCATATATAGCACGAGTAAT 57.523 36.000 0.00 0.00 0.00 1.89
233 239 6.904463 TGTTCCCATATATAGCACGAGTAA 57.096 37.500 0.00 0.00 0.00 2.24
234 240 6.904463 TTGTTCCCATATATAGCACGAGTA 57.096 37.500 0.00 0.00 0.00 2.59
235 241 5.801531 TTGTTCCCATATATAGCACGAGT 57.198 39.130 0.00 0.00 0.00 4.18
236 242 7.672983 ATTTTGTTCCCATATATAGCACGAG 57.327 36.000 0.00 0.00 0.00 4.18
237 243 7.500892 ACAATTTTGTTCCCATATATAGCACGA 59.499 33.333 0.00 0.00 38.47 4.35
238 244 7.648142 ACAATTTTGTTCCCATATATAGCACG 58.352 34.615 0.00 0.00 38.47 5.34
278 284 7.310237 GGAACGGAGGGAGTATATTATAGCAAA 60.310 40.741 0.00 0.00 0.00 3.68
290 296 5.134725 AGTATTTAGGAACGGAGGGAGTA 57.865 43.478 0.00 0.00 0.00 2.59
291 297 3.991683 AGTATTTAGGAACGGAGGGAGT 58.008 45.455 0.00 0.00 0.00 3.85
292 298 4.161754 ACAAGTATTTAGGAACGGAGGGAG 59.838 45.833 0.00 0.00 0.00 4.30
293 299 4.098894 ACAAGTATTTAGGAACGGAGGGA 58.901 43.478 0.00 0.00 0.00 4.20
294 300 4.161754 AGACAAGTATTTAGGAACGGAGGG 59.838 45.833 0.00 0.00 0.00 4.30
295 301 5.340439 AGACAAGTATTTAGGAACGGAGG 57.660 43.478 0.00 0.00 0.00 4.30
296 302 7.668525 AAAAGACAAGTATTTAGGAACGGAG 57.331 36.000 0.00 0.00 0.00 4.63
297 303 9.211485 CTAAAAAGACAAGTATTTAGGAACGGA 57.789 33.333 0.00 0.00 33.69 4.69
309 315 9.474920 CATTTGAAATGCCTAAAAAGACAAGTA 57.525 29.630 4.82 0.00 0.00 2.24
310 316 7.442062 CCATTTGAAATGCCTAAAAAGACAAGT 59.558 33.333 12.26 0.00 0.00 3.16
311 317 7.656948 TCCATTTGAAATGCCTAAAAAGACAAG 59.343 33.333 12.26 0.00 0.00 3.16
312 318 7.440856 GTCCATTTGAAATGCCTAAAAAGACAA 59.559 33.333 12.26 0.00 0.00 3.18
313 319 6.928492 GTCCATTTGAAATGCCTAAAAAGACA 59.072 34.615 12.26 0.00 0.00 3.41
314 320 7.154656 AGTCCATTTGAAATGCCTAAAAAGAC 58.845 34.615 12.26 10.86 0.00 3.01
315 321 7.015098 TGAGTCCATTTGAAATGCCTAAAAAGA 59.985 33.333 12.26 0.00 0.00 2.52
316 322 7.153985 TGAGTCCATTTGAAATGCCTAAAAAG 58.846 34.615 12.26 0.00 0.00 2.27
317 323 7.060383 TGAGTCCATTTGAAATGCCTAAAAA 57.940 32.000 12.26 0.00 0.00 1.94
318 324 6.662865 TGAGTCCATTTGAAATGCCTAAAA 57.337 33.333 12.26 0.00 0.00 1.52
319 325 6.041409 TGTTGAGTCCATTTGAAATGCCTAAA 59.959 34.615 12.26 6.88 0.00 1.85
320 326 5.538053 TGTTGAGTCCATTTGAAATGCCTAA 59.462 36.000 12.26 1.26 0.00 2.69
321 327 5.076182 TGTTGAGTCCATTTGAAATGCCTA 58.924 37.500 12.26 0.00 0.00 3.93
322 328 3.896888 TGTTGAGTCCATTTGAAATGCCT 59.103 39.130 12.26 9.70 0.00 4.75
323 329 4.255833 TGTTGAGTCCATTTGAAATGCC 57.744 40.909 12.26 5.23 0.00 4.40
324 330 5.512788 CGTATGTTGAGTCCATTTGAAATGC 59.487 40.000 12.26 0.23 0.00 3.56
325 331 6.029607 CCGTATGTTGAGTCCATTTGAAATG 58.970 40.000 10.84 10.84 0.00 2.32
326 332 5.943416 TCCGTATGTTGAGTCCATTTGAAAT 59.057 36.000 0.00 0.00 0.00 2.17
327 333 5.309638 TCCGTATGTTGAGTCCATTTGAAA 58.690 37.500 0.00 0.00 0.00 2.69
328 334 4.900684 TCCGTATGTTGAGTCCATTTGAA 58.099 39.130 0.00 0.00 0.00 2.69
329 335 4.545208 TCCGTATGTTGAGTCCATTTGA 57.455 40.909 0.00 0.00 0.00 2.69
330 336 8.659491 CATATATCCGTATGTTGAGTCCATTTG 58.341 37.037 0.00 0.00 0.00 2.32
331 337 8.375506 ACATATATCCGTATGTTGAGTCCATTT 58.624 33.333 0.00 0.00 41.29 2.32
332 338 7.907389 ACATATATCCGTATGTTGAGTCCATT 58.093 34.615 0.00 0.00 41.29 3.16
333 339 7.482169 ACATATATCCGTATGTTGAGTCCAT 57.518 36.000 0.00 0.00 41.29 3.41
334 340 6.911250 ACATATATCCGTATGTTGAGTCCA 57.089 37.500 0.00 0.00 41.29 4.02
335 341 8.182881 GTCTACATATATCCGTATGTTGAGTCC 58.817 40.741 10.07 0.00 42.85 3.85
336 342 8.727910 TGTCTACATATATCCGTATGTTGAGTC 58.272 37.037 10.07 3.37 42.85 3.36
337 343 8.631480 TGTCTACATATATCCGTATGTTGAGT 57.369 34.615 10.07 0.00 42.85 3.41
372 378 4.091424 GCGCAAAATGAGTGAATCTACAC 58.909 43.478 0.30 0.00 40.60 2.90
373 379 3.126858 GGCGCAAAATGAGTGAATCTACA 59.873 43.478 10.83 0.00 0.00 2.74
374 380 3.685058 GGCGCAAAATGAGTGAATCTAC 58.315 45.455 10.83 0.00 0.00 2.59
375 381 2.351418 CGGCGCAAAATGAGTGAATCTA 59.649 45.455 10.83 0.00 0.00 1.98
376 382 1.131126 CGGCGCAAAATGAGTGAATCT 59.869 47.619 10.83 0.00 0.00 2.40
377 383 1.135689 ACGGCGCAAAATGAGTGAATC 60.136 47.619 10.83 0.00 0.00 2.52
378 384 0.881118 ACGGCGCAAAATGAGTGAAT 59.119 45.000 10.83 0.00 0.00 2.57
379 385 1.514003 TACGGCGCAAAATGAGTGAA 58.486 45.000 10.83 0.00 0.00 3.18
380 386 1.396648 CATACGGCGCAAAATGAGTGA 59.603 47.619 10.83 0.00 0.00 3.41
381 387 1.130373 ACATACGGCGCAAAATGAGTG 59.870 47.619 10.83 0.00 0.00 3.51
382 388 1.448985 ACATACGGCGCAAAATGAGT 58.551 45.000 10.83 0.00 0.00 3.41
383 389 2.607635 ACTACATACGGCGCAAAATGAG 59.392 45.455 10.83 10.39 0.00 2.90
384 390 2.605818 GACTACATACGGCGCAAAATGA 59.394 45.455 10.83 0.00 0.00 2.57
385 391 2.350192 TGACTACATACGGCGCAAAATG 59.650 45.455 10.83 11.57 0.00 2.32
386 392 2.350498 GTGACTACATACGGCGCAAAAT 59.650 45.455 10.83 0.00 0.00 1.82
387 393 1.727880 GTGACTACATACGGCGCAAAA 59.272 47.619 10.83 0.00 0.00 2.44
388 394 1.067425 AGTGACTACATACGGCGCAAA 60.067 47.619 10.83 0.00 0.00 3.68
389 395 0.528924 AGTGACTACATACGGCGCAA 59.471 50.000 10.83 0.00 0.00 4.85
390 396 0.528924 AAGTGACTACATACGGCGCA 59.471 50.000 10.83 0.00 0.00 6.09
391 397 0.921347 CAAGTGACTACATACGGCGC 59.079 55.000 6.90 0.00 0.00 6.53
392 398 2.273370 ACAAGTGACTACATACGGCG 57.727 50.000 4.80 4.80 0.00 6.46
393 399 6.470557 TTTTAACAAGTGACTACATACGGC 57.529 37.500 0.00 0.00 0.00 5.68
394 400 8.475331 AGATTTTAACAAGTGACTACATACGG 57.525 34.615 0.00 0.00 0.00 4.02
395 401 9.355215 AGAGATTTTAACAAGTGACTACATACG 57.645 33.333 0.00 0.00 0.00 3.06
418 424 9.291664 CGTTCCTAAATACTTGTCTTTCTAGAG 57.708 37.037 0.00 0.00 0.00 2.43
419 425 8.248945 CCGTTCCTAAATACTTGTCTTTCTAGA 58.751 37.037 0.00 0.00 0.00 2.43
420 426 8.248945 TCCGTTCCTAAATACTTGTCTTTCTAG 58.751 37.037 0.00 0.00 0.00 2.43
421 427 8.125978 TCCGTTCCTAAATACTTGTCTTTCTA 57.874 34.615 0.00 0.00 0.00 2.10
422 428 7.001099 TCCGTTCCTAAATACTTGTCTTTCT 57.999 36.000 0.00 0.00 0.00 2.52
423 429 6.313164 CCTCCGTTCCTAAATACTTGTCTTTC 59.687 42.308 0.00 0.00 0.00 2.62
424 430 6.171213 CCTCCGTTCCTAAATACTTGTCTTT 58.829 40.000 0.00 0.00 0.00 2.52
425 431 5.338137 CCCTCCGTTCCTAAATACTTGTCTT 60.338 44.000 0.00 0.00 0.00 3.01
426 432 4.161754 CCCTCCGTTCCTAAATACTTGTCT 59.838 45.833 0.00 0.00 0.00 3.41
427 433 4.161001 TCCCTCCGTTCCTAAATACTTGTC 59.839 45.833 0.00 0.00 0.00 3.18
428 434 4.098894 TCCCTCCGTTCCTAAATACTTGT 58.901 43.478 0.00 0.00 0.00 3.16
429 435 4.161754 ACTCCCTCCGTTCCTAAATACTTG 59.838 45.833 0.00 0.00 0.00 3.16
430 436 4.359996 ACTCCCTCCGTTCCTAAATACTT 58.640 43.478 0.00 0.00 0.00 2.24
431 437 3.991683 ACTCCCTCCGTTCCTAAATACT 58.008 45.455 0.00 0.00 0.00 2.12
432 438 4.646492 TGTACTCCCTCCGTTCCTAAATAC 59.354 45.833 0.00 0.00 0.00 1.89
433 439 4.870636 TGTACTCCCTCCGTTCCTAAATA 58.129 43.478 0.00 0.00 0.00 1.40
434 440 3.716431 TGTACTCCCTCCGTTCCTAAAT 58.284 45.455 0.00 0.00 0.00 1.40
435 441 3.173953 TGTACTCCCTCCGTTCCTAAA 57.826 47.619 0.00 0.00 0.00 1.85
436 442 2.905415 TGTACTCCCTCCGTTCCTAA 57.095 50.000 0.00 0.00 0.00 2.69
437 443 2.242965 TCATGTACTCCCTCCGTTCCTA 59.757 50.000 0.00 0.00 0.00 2.94
438 444 1.006758 TCATGTACTCCCTCCGTTCCT 59.993 52.381 0.00 0.00 0.00 3.36
439 445 1.409427 CTCATGTACTCCCTCCGTTCC 59.591 57.143 0.00 0.00 0.00 3.62
440 446 2.099427 GTCTCATGTACTCCCTCCGTTC 59.901 54.545 0.00 0.00 0.00 3.95
441 447 2.100989 GTCTCATGTACTCCCTCCGTT 58.899 52.381 0.00 0.00 0.00 4.44
442 448 1.285373 AGTCTCATGTACTCCCTCCGT 59.715 52.381 0.00 0.00 0.00 4.69
443 449 1.678627 CAGTCTCATGTACTCCCTCCG 59.321 57.143 0.00 0.00 0.00 4.63
444 450 2.035632 CCAGTCTCATGTACTCCCTCC 58.964 57.143 0.00 0.00 0.00 4.30
445 451 2.691011 GACCAGTCTCATGTACTCCCTC 59.309 54.545 0.00 0.00 0.00 4.30
446 452 2.624557 GGACCAGTCTCATGTACTCCCT 60.625 54.545 0.00 0.00 0.00 4.20
447 453 1.757699 GGACCAGTCTCATGTACTCCC 59.242 57.143 0.00 0.00 0.00 4.30
448 454 2.457598 TGGACCAGTCTCATGTACTCC 58.542 52.381 0.00 0.00 0.00 3.85
449 455 3.258372 TGTTGGACCAGTCTCATGTACTC 59.742 47.826 0.00 0.00 0.00 2.59
450 456 3.239449 TGTTGGACCAGTCTCATGTACT 58.761 45.455 0.00 0.00 0.00 2.73
451 457 3.678056 TGTTGGACCAGTCTCATGTAC 57.322 47.619 0.00 0.00 0.00 2.90
487 494 1.302033 GACCAGTCACCACCAGCAG 60.302 63.158 0.00 0.00 0.00 4.24
488 495 2.818169 GGACCAGTCACCACCAGCA 61.818 63.158 0.00 0.00 0.00 4.41
489 496 2.032681 GGACCAGTCACCACCAGC 59.967 66.667 0.00 0.00 0.00 4.85
516 523 5.933734 ATCGCGCGTATAATTATCTCAAG 57.066 39.130 30.98 0.00 0.00 3.02
597 604 9.338622 GTATATATCTAGCAAACAACCACCTTT 57.661 33.333 0.00 0.00 0.00 3.11
706 719 4.825422 TCAGCTATTCTCCACTCAAACAG 58.175 43.478 0.00 0.00 0.00 3.16
707 720 4.890158 TCAGCTATTCTCCACTCAAACA 57.110 40.909 0.00 0.00 0.00 2.83
831 849 4.581309 AGGAATGTTGGATCTCACACAT 57.419 40.909 0.00 0.71 32.52 3.21
910 928 1.832167 TGGAGTTTGCAGTTGGGGC 60.832 57.895 0.00 0.00 0.00 5.80
1054 1082 2.607750 ATGGTGGGTGCGAGGAGT 60.608 61.111 0.00 0.00 0.00 3.85
1089 1117 6.666546 ACTAGTAGTAACATTTACCTGGAGCA 59.333 38.462 0.00 0.00 0.00 4.26
1128 1160 1.454111 TCTCTCTAGGCACCGGAGC 60.454 63.158 16.31 16.31 0.00 4.70
1135 1167 3.073209 ACGATCCATAGTCTCTCTAGGCA 59.927 47.826 0.00 0.00 31.67 4.75
1136 1168 3.438781 CACGATCCATAGTCTCTCTAGGC 59.561 52.174 0.00 0.00 31.67 3.93
1137 1169 3.438781 GCACGATCCATAGTCTCTCTAGG 59.561 52.174 0.00 0.00 31.67 3.02
1138 1170 3.438781 GGCACGATCCATAGTCTCTCTAG 59.561 52.174 0.00 0.00 31.67 2.43
1139 1171 3.073209 AGGCACGATCCATAGTCTCTCTA 59.927 47.826 0.00 0.00 0.00 2.43
1140 1172 2.158534 AGGCACGATCCATAGTCTCTCT 60.159 50.000 0.00 0.00 0.00 3.10
1141 1173 2.235016 AGGCACGATCCATAGTCTCTC 58.765 52.381 0.00 0.00 0.00 3.20
1142 1174 2.373335 AGGCACGATCCATAGTCTCT 57.627 50.000 0.00 0.00 0.00 3.10
1151 1183 7.167635 CACATCGTATATTATTAGGCACGATCC 59.832 40.741 7.95 0.00 44.61 3.36
1158 1190 5.424757 TGCCCACATCGTATATTATTAGGC 58.575 41.667 0.00 0.00 36.06 3.93
1166 1198 5.129634 TCAACAATTGCCCACATCGTATAT 58.870 37.500 5.05 0.00 0.00 0.86
1453 1494 1.268899 GCATGAACATGGATGCTAGGC 59.731 52.381 15.15 0.00 41.52 3.93
1456 1497 1.134128 ACCGCATGAACATGGATGCTA 60.134 47.619 18.73 0.00 42.40 3.49
1459 1500 2.019249 AGAACCGCATGAACATGGATG 58.981 47.619 15.15 0.00 39.16 3.51
1462 1503 3.009723 ACTAAGAACCGCATGAACATGG 58.990 45.455 15.15 3.77 39.16 3.66
1474 1515 8.092687 AGATCGAGTAGAGAGATACTAAGAACC 58.907 40.741 0.00 0.00 36.13 3.62
1485 1526 5.416639 AGCGAGTATAGATCGAGTAGAGAGA 59.583 44.000 10.65 0.00 42.76 3.10
1488 1529 6.588756 AGAAAGCGAGTATAGATCGAGTAGAG 59.411 42.308 10.65 0.00 42.76 2.43
1496 1537 5.477637 AGGGGTTAGAAAGCGAGTATAGATC 59.522 44.000 0.00 0.00 0.00 2.75
1502 1546 1.206371 GCAGGGGTTAGAAAGCGAGTA 59.794 52.381 0.00 0.00 0.00 2.59
1504 1548 2.768834 GCAGGGGTTAGAAAGCGAG 58.231 57.895 0.00 0.00 0.00 5.03
1617 1661 0.501435 CTTATACGTACCTTGCGCGC 59.499 55.000 27.26 27.26 0.00 6.86
1658 1702 7.651027 AGGAAATCCAATCCAAAGAACATAG 57.349 36.000 1.67 0.00 39.55 2.23
1673 1717 4.119862 CGATCGAGCTTAAAGGAAATCCA 58.880 43.478 10.26 0.00 38.89 3.41
1734 1778 4.084328 CCTGCGTTGTTTTTGAAACAAACA 60.084 37.500 17.53 16.67 41.23 2.83
1735 1779 4.150804 TCCTGCGTTGTTTTTGAAACAAAC 59.849 37.500 17.53 13.86 41.23 2.93
1743 1787 2.108700 CTTCGTCCTGCGTTGTTTTTG 58.891 47.619 0.00 0.00 42.13 2.44
1943 1988 3.570125 TGTTGTTGTTGTTGTTGGAGACA 59.430 39.130 0.00 0.00 39.83 3.41
1978 2023 0.455295 CGCGGTGTTGTTGTTGTTGT 60.455 50.000 0.00 0.00 0.00 3.32
1980 2025 1.137825 CCGCGGTGTTGTTGTTGTT 59.862 52.632 19.50 0.00 0.00 2.83
1981 2026 1.745864 TCCGCGGTGTTGTTGTTGT 60.746 52.632 27.15 0.00 0.00 3.32
1982 2027 1.298041 GTCCGCGGTGTTGTTGTTG 60.298 57.895 27.15 0.00 0.00 3.33
1983 2028 2.474612 GGTCCGCGGTGTTGTTGTT 61.475 57.895 27.15 0.00 0.00 2.83
1984 2029 2.898343 GGTCCGCGGTGTTGTTGT 60.898 61.111 27.15 0.00 0.00 3.32
1985 2030 4.007940 CGGTCCGCGGTGTTGTTG 62.008 66.667 27.15 5.47 0.00 3.33
2087 2142 5.682659 TCTAGTAAGTAGACTAGCTGGTGG 58.317 45.833 7.76 0.00 45.80 4.61
2129 2187 0.927537 GCGAAACTGTTGGTTTTGGC 59.072 50.000 9.57 6.56 46.77 4.52
2130 2188 1.923864 GTGCGAAACTGTTGGTTTTGG 59.076 47.619 9.57 1.57 46.77 3.28
2157 2215 4.389576 GGCAACAGTCTTGCGCGG 62.390 66.667 8.83 0.00 45.78 6.46
2197 2255 5.392595 CGTGTTCCTTCCTGACAAAGAAAAA 60.393 40.000 0.00 0.00 0.00 1.94
2198 2256 4.095782 CGTGTTCCTTCCTGACAAAGAAAA 59.904 41.667 0.00 0.00 0.00 2.29
2534 2600 7.367285 TGGAACAACACTTTGCATAGATTAAC 58.633 34.615 11.39 1.27 36.00 2.01
2564 2630 4.000988 AGGTACATACGTGAGCAAAAAGG 58.999 43.478 0.00 0.00 0.00 3.11
2602 2668 7.250569 CAAACACAAATGATAAGCGGATAACT 58.749 34.615 0.00 0.00 0.00 2.24
2622 2688 5.467399 CCGTGTTTAGTTGTCTATCCAAACA 59.533 40.000 0.00 0.00 0.00 2.83
2669 2737 3.074412 GTTTGATTGTCCAGTCCACGAT 58.926 45.455 0.00 0.00 0.00 3.73
2670 2738 2.104111 AGTTTGATTGTCCAGTCCACGA 59.896 45.455 0.00 0.00 0.00 4.35
2671 2739 2.494059 AGTTTGATTGTCCAGTCCACG 58.506 47.619 0.00 0.00 0.00 4.94
2692 2760 2.377628 ATCAGTTGCGTCCGTGTGGT 62.378 55.000 0.00 0.00 36.30 4.16
2758 2826 1.194218 TCCATCAGCGTGGATCTGAA 58.806 50.000 4.67 0.00 43.20 3.02
2797 2865 1.741145 ACGTGAAACAAACACCACCTC 59.259 47.619 0.00 0.00 35.74 3.85
2829 2897 0.674269 GGGGTTTTATGGCGTCGTGA 60.674 55.000 0.00 0.00 0.00 4.35
2955 3025 2.045524 AGAAGACGGAGATGGCATGAT 58.954 47.619 3.81 0.00 0.00 2.45
2969 3039 4.580995 TGATGCTACTGGCTACTAGAAGAC 59.419 45.833 0.00 0.00 42.39 3.01
3006 3077 2.164338 GTGGCGAAAATTACCCAAGGA 58.836 47.619 0.00 0.00 0.00 3.36


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.