Multiple sequence alignment - TraesCS2B01G434800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G434800 chr2B 100.000 3931 0 0 1 3931 624767163 624771093 0.000000e+00 7260.0
1 TraesCS2B01G434800 chr2B 89.310 870 63 19 952 1805 568469139 568468284 0.000000e+00 1064.0
2 TraesCS2B01G434800 chr2B 85.085 704 76 14 2312 3001 568467716 568467028 0.000000e+00 691.0
3 TraesCS2B01G434800 chr2B 88.675 468 45 4 1802 2264 568468189 568467725 7.370000e-157 564.0
4 TraesCS2B01G434800 chr2B 93.548 279 18 0 412 690 649447111 649446833 2.190000e-112 416.0
5 TraesCS2B01G434800 chr2B 91.639 299 22 3 398 695 583409705 583410001 1.020000e-110 411.0
6 TraesCS2B01G434800 chr2B 92.118 203 14 2 32 233 230774047 230773846 6.430000e-73 285.0
7 TraesCS2B01G434800 chr2A 93.170 1596 79 16 712 2284 672367988 672369576 0.000000e+00 2316.0
8 TraesCS2B01G434800 chr2A 88.493 869 71 13 952 1805 627513595 627512741 0.000000e+00 1024.0
9 TraesCS2B01G434800 chr2A 85.755 709 64 28 2312 3001 627512139 627511449 0.000000e+00 715.0
10 TraesCS2B01G434800 chr2A 94.915 413 20 1 2643 3055 672369961 672370372 0.000000e+00 645.0
11 TraesCS2B01G434800 chr2A 85.685 489 42 13 1802 2264 627512634 627512148 1.270000e-134 490.0
12 TraesCS2B01G434800 chr2A 89.390 377 24 8 2327 2690 672369583 672369956 9.950000e-126 460.0
13 TraesCS2B01G434800 chr2A 93.286 283 18 1 408 690 68864110 68864391 2.190000e-112 416.0
14 TraesCS2B01G434800 chr2A 90.306 196 7 6 230 413 672367776 672367971 3.030000e-61 246.0
15 TraesCS2B01G434800 chr2A 85.714 126 10 3 295 412 627514033 627513908 4.120000e-25 126.0
16 TraesCS2B01G434800 chr2D 94.391 1355 58 9 952 2296 527491641 527492987 0.000000e+00 2065.0
17 TraesCS2B01G434800 chr2D 86.317 1659 137 46 2311 3931 527492973 527494579 0.000000e+00 1724.0
18 TraesCS2B01G434800 chr2D 88.736 870 67 20 952 1805 483633022 483632168 0.000000e+00 1035.0
19 TraesCS2B01G434800 chr2D 82.768 708 82 20 2323 3001 483631577 483630881 2.610000e-166 595.0
20 TraesCS2B01G434800 chr2D 89.308 477 41 3 1802 2271 483632061 483631588 1.220000e-164 590.0
21 TraesCS2B01G434800 chr2D 92.424 198 14 1 36 233 516410803 516410999 8.320000e-72 281.0
22 TraesCS2B01G434800 chr2D 93.220 177 9 2 240 413 527491121 527491297 1.400000e-64 257.0
23 TraesCS2B01G434800 chr2D 88.000 150 8 6 712 859 527491314 527491455 6.760000e-38 169.0
24 TraesCS2B01G434800 chr2D 83.246 191 19 8 233 412 483633530 483633342 3.140000e-36 163.0
25 TraesCS2B01G434800 chr4D 81.625 849 106 34 998 1807 500718799 500717962 0.000000e+00 658.0
26 TraesCS2B01G434800 chr4D 85.319 470 61 6 987 1455 502013335 502013797 2.750000e-131 479.0
27 TraesCS2B01G434800 chr4D 81.535 482 54 21 1802 2262 502014490 502014957 8.030000e-97 364.0
28 TraesCS2B01G434800 chr4D 93.299 194 13 0 40 233 118518422 118518615 1.790000e-73 287.0
29 TraesCS2B01G434800 chr4D 85.816 141 20 0 1525 1665 502013914 502014054 2.450000e-32 150.0
30 TraesCS2B01G434800 chr5A 81.645 839 109 32 999 1807 681899547 681898724 0.000000e+00 654.0
31 TraesCS2B01G434800 chr5A 81.645 839 109 32 999 1807 683630971 683631794 0.000000e+00 654.0
32 TraesCS2B01G434800 chr5A 82.180 477 56 18 1802 2262 684648196 684648659 2.220000e-102 383.0
33 TraesCS2B01G434800 chr5A 81.879 298 35 17 1525 1805 684647798 684648093 2.360000e-57 233.0
34 TraesCS2B01G434800 chr5A 81.443 291 38 13 1962 2245 12880104 12880385 1.420000e-54 224.0
35 TraesCS2B01G434800 chr5A 93.478 46 2 1 3407 3451 387343762 387343717 2.540000e-07 67.6
36 TraesCS2B01G434800 chr5A 96.970 33 1 0 3407 3439 387344034 387344002 5.490000e-04 56.5
37 TraesCS2B01G434800 chr4B 81.598 826 113 30 998 1807 644681777 644680975 0.000000e+00 647.0
38 TraesCS2B01G434800 chr4B 85.501 469 62 3 987 1455 646112698 646113160 5.910000e-133 484.0
39 TraesCS2B01G434800 chr4B 80.625 480 67 14 1802 2259 646114188 646114663 8.080000e-92 348.0
40 TraesCS2B01G434800 chr4B 87.313 134 16 1 1535 1667 646113689 646113822 6.800000e-33 152.0
41 TraesCS2B01G434800 chr6B 94.565 276 15 0 415 690 664743936 664744211 1.010000e-115 427.0
42 TraesCS2B01G434800 chr6B 92.958 284 20 0 407 690 689209460 689209743 7.860000e-112 414.0
43 TraesCS2B01G434800 chr7B 93.929 280 16 1 412 690 709755323 709755044 4.700000e-114 422.0
44 TraesCS2B01G434800 chr7B 93.333 195 12 1 40 233 657200652 657200458 1.790000e-73 287.0
45 TraesCS2B01G434800 chr3B 93.907 279 17 0 412 690 17350568 17350290 4.700000e-114 422.0
46 TraesCS2B01G434800 chr3B 93.056 288 20 0 403 690 58625932 58625645 4.700000e-114 422.0
47 TraesCS2B01G434800 chr3B 93.190 279 19 0 412 690 58640950 58640672 1.020000e-110 411.0
48 TraesCS2B01G434800 chr4A 94.681 188 10 0 46 233 634457246 634457059 3.840000e-75 292.0
49 TraesCS2B01G434800 chr4A 88.000 50 4 1 3390 3437 735739846 735739797 1.530000e-04 58.4
50 TraesCS2B01G434800 chr4A 89.362 47 3 1 3390 3434 736427932 736427978 1.530000e-04 58.4
51 TraesCS2B01G434800 chr5B 95.109 184 9 0 49 232 214123507 214123324 1.380000e-74 291.0
52 TraesCS2B01G434800 chr5B 91.469 211 13 4 36 242 588535258 588535467 6.430000e-73 285.0
53 TraesCS2B01G434800 chr1D 93.367 196 12 1 40 234 93500975 93501170 4.970000e-74 289.0
54 TraesCS2B01G434800 chr1D 96.875 32 1 0 3407 3438 42340577 42340608 2.000000e-03 54.7
55 TraesCS2B01G434800 chr6D 92.893 197 13 1 38 233 104588573 104588769 6.430000e-73 285.0
56 TraesCS2B01G434800 chr3D 89.583 48 4 1 3405 3451 577835597 577835644 4.240000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G434800 chr2B 624767163 624771093 3930 False 7260.00 7260 100.000000 1 3931 1 chr2B.!!$F2 3930
1 TraesCS2B01G434800 chr2B 568467028 568469139 2111 True 773.00 1064 87.690000 952 3001 3 chr2B.!!$R3 2049
2 TraesCS2B01G434800 chr2A 672367776 672370372 2596 False 916.75 2316 91.945250 230 3055 4 chr2A.!!$F2 2825
3 TraesCS2B01G434800 chr2A 627511449 627514033 2584 True 588.75 1024 86.411750 295 3001 4 chr2A.!!$R1 2706
4 TraesCS2B01G434800 chr2D 527491121 527494579 3458 False 1053.75 2065 90.482000 240 3931 4 chr2D.!!$F2 3691
5 TraesCS2B01G434800 chr2D 483630881 483633530 2649 True 595.75 1035 86.014500 233 3001 4 chr2D.!!$R1 2768
6 TraesCS2B01G434800 chr4D 500717962 500718799 837 True 658.00 658 81.625000 998 1807 1 chr4D.!!$R1 809
7 TraesCS2B01G434800 chr4D 502013335 502014957 1622 False 331.00 479 84.223333 987 2262 3 chr4D.!!$F2 1275
8 TraesCS2B01G434800 chr5A 681898724 681899547 823 True 654.00 654 81.645000 999 1807 1 chr5A.!!$R1 808
9 TraesCS2B01G434800 chr5A 683630971 683631794 823 False 654.00 654 81.645000 999 1807 1 chr5A.!!$F2 808
10 TraesCS2B01G434800 chr5A 684647798 684648659 861 False 308.00 383 82.029500 1525 2262 2 chr5A.!!$F3 737
11 TraesCS2B01G434800 chr4B 644680975 644681777 802 True 647.00 647 81.598000 998 1807 1 chr4B.!!$R1 809
12 TraesCS2B01G434800 chr4B 646112698 646114663 1965 False 328.00 484 84.479667 987 2259 3 chr4B.!!$F1 1272

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
19 20 0.172578 ACACGCGCAGTAGATTGCTA 59.827 50.0 5.73 0.0 41.90 3.49 F
69 70 0.185175 GGGTGTTTGGTTCAGGGACT 59.815 55.0 0.00 0.0 43.88 3.85 F
416 435 0.333312 TTGTGGTTGTTGGACCCTGT 59.667 50.0 0.00 0.0 39.01 4.00 F
1384 1591 0.393820 TGCTGCGATCAGGCATCATA 59.606 50.0 0.00 0.0 42.99 2.15 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2000 3106 1.004560 GGCAGCAGCACAGAGTACA 60.005 57.895 2.65 0.0 44.61 2.90 R
2106 3217 8.738645 ATAAATAGAAGAAGTGTGAATCCACC 57.261 34.615 0.00 0.0 42.53 4.61 R
2133 3250 1.953686 TCAGGGCTGTTAAACTTGTGC 59.046 47.619 0.00 0.0 0.00 4.57 R
3224 4497 0.536460 AAAAAGAAAGCCGGCTCCGA 60.536 50.000 32.93 0.0 42.83 4.55 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.474806 ACACGCGCAGTAGATTGC 58.525 55.556 5.73 0.00 40.67 3.56
18 19 1.079819 ACACGCGCAGTAGATTGCT 60.080 52.632 5.73 0.00 41.90 3.91
19 20 0.172578 ACACGCGCAGTAGATTGCTA 59.827 50.000 5.73 0.00 41.90 3.49
20 21 1.277326 CACGCGCAGTAGATTGCTAA 58.723 50.000 5.73 0.00 41.90 3.09
21 22 1.658596 CACGCGCAGTAGATTGCTAAA 59.341 47.619 5.73 0.00 41.90 1.85
22 23 2.093625 CACGCGCAGTAGATTGCTAAAA 59.906 45.455 5.73 0.00 41.90 1.52
23 24 2.093783 ACGCGCAGTAGATTGCTAAAAC 59.906 45.455 5.73 0.00 41.90 2.43
24 25 2.093625 CGCGCAGTAGATTGCTAAAACA 59.906 45.455 8.75 0.00 41.90 2.83
25 26 3.674423 GCGCAGTAGATTGCTAAAACAG 58.326 45.455 0.30 0.00 41.90 3.16
26 27 3.125316 GCGCAGTAGATTGCTAAAACAGT 59.875 43.478 0.30 0.00 41.90 3.55
27 28 4.378459 GCGCAGTAGATTGCTAAAACAGTT 60.378 41.667 0.30 0.00 41.90 3.16
28 29 5.316770 CGCAGTAGATTGCTAAAACAGTTC 58.683 41.667 0.00 0.00 41.90 3.01
29 30 5.120830 CGCAGTAGATTGCTAAAACAGTTCT 59.879 40.000 0.00 0.00 41.90 3.01
30 31 6.538444 GCAGTAGATTGCTAAAACAGTTCTC 58.462 40.000 0.00 0.00 40.89 2.87
31 32 6.670927 GCAGTAGATTGCTAAAACAGTTCTCG 60.671 42.308 0.00 0.00 40.89 4.04
32 33 6.366332 CAGTAGATTGCTAAAACAGTTCTCGT 59.634 38.462 0.00 0.00 0.00 4.18
33 34 6.929606 AGTAGATTGCTAAAACAGTTCTCGTT 59.070 34.615 0.00 0.00 0.00 3.85
34 35 6.229561 AGATTGCTAAAACAGTTCTCGTTC 57.770 37.500 0.00 0.00 0.00 3.95
35 36 4.806342 TTGCTAAAACAGTTCTCGTTCC 57.194 40.909 0.00 0.00 0.00 3.62
36 37 4.067972 TGCTAAAACAGTTCTCGTTCCT 57.932 40.909 0.00 0.00 0.00 3.36
37 38 3.807622 TGCTAAAACAGTTCTCGTTCCTG 59.192 43.478 0.00 0.00 0.00 3.86
38 39 3.186613 GCTAAAACAGTTCTCGTTCCTGG 59.813 47.826 0.00 0.00 0.00 4.45
39 40 3.277142 AAAACAGTTCTCGTTCCTGGT 57.723 42.857 0.00 0.00 0.00 4.00
40 41 4.411256 AAAACAGTTCTCGTTCCTGGTA 57.589 40.909 0.00 0.00 0.00 3.25
41 42 3.662247 AACAGTTCTCGTTCCTGGTAG 57.338 47.619 0.00 0.00 0.00 3.18
42 43 2.595238 ACAGTTCTCGTTCCTGGTAGT 58.405 47.619 0.00 0.00 0.00 2.73
43 44 3.759581 ACAGTTCTCGTTCCTGGTAGTA 58.240 45.455 0.00 0.00 0.00 1.82
44 45 4.342359 ACAGTTCTCGTTCCTGGTAGTAT 58.658 43.478 0.00 0.00 0.00 2.12
45 46 4.771054 ACAGTTCTCGTTCCTGGTAGTATT 59.229 41.667 0.00 0.00 0.00 1.89
46 47 5.245526 ACAGTTCTCGTTCCTGGTAGTATTT 59.754 40.000 0.00 0.00 0.00 1.40
47 48 6.435277 ACAGTTCTCGTTCCTGGTAGTATTTA 59.565 38.462 0.00 0.00 0.00 1.40
48 49 6.973474 CAGTTCTCGTTCCTGGTAGTATTTAG 59.027 42.308 0.00 0.00 0.00 1.85
49 50 6.096564 AGTTCTCGTTCCTGGTAGTATTTAGG 59.903 42.308 0.00 0.00 0.00 2.69
50 51 4.891756 TCTCGTTCCTGGTAGTATTTAGGG 59.108 45.833 0.00 0.00 0.00 3.53
51 52 3.962718 TCGTTCCTGGTAGTATTTAGGGG 59.037 47.826 0.00 0.00 0.00 4.79
52 53 3.070590 CGTTCCTGGTAGTATTTAGGGGG 59.929 52.174 0.00 0.00 0.00 5.40
53 54 4.042884 GTTCCTGGTAGTATTTAGGGGGT 58.957 47.826 0.00 0.00 0.00 4.95
54 55 3.660959 TCCTGGTAGTATTTAGGGGGTG 58.339 50.000 0.00 0.00 0.00 4.61
55 56 3.014342 TCCTGGTAGTATTTAGGGGGTGT 59.986 47.826 0.00 0.00 0.00 4.16
56 57 3.784202 CCTGGTAGTATTTAGGGGGTGTT 59.216 47.826 0.00 0.00 0.00 3.32
57 58 4.228895 CCTGGTAGTATTTAGGGGGTGTTT 59.771 45.833 0.00 0.00 0.00 2.83
58 59 5.182169 TGGTAGTATTTAGGGGGTGTTTG 57.818 43.478 0.00 0.00 0.00 2.93
59 60 4.018233 TGGTAGTATTTAGGGGGTGTTTGG 60.018 45.833 0.00 0.00 0.00 3.28
60 61 4.018141 GGTAGTATTTAGGGGGTGTTTGGT 60.018 45.833 0.00 0.00 0.00 3.67
61 62 4.752621 AGTATTTAGGGGGTGTTTGGTT 57.247 40.909 0.00 0.00 0.00 3.67
62 63 4.669700 AGTATTTAGGGGGTGTTTGGTTC 58.330 43.478 0.00 0.00 0.00 3.62
63 64 3.621682 ATTTAGGGGGTGTTTGGTTCA 57.378 42.857 0.00 0.00 0.00 3.18
64 65 2.668144 TTAGGGGGTGTTTGGTTCAG 57.332 50.000 0.00 0.00 0.00 3.02
65 66 0.774908 TAGGGGGTGTTTGGTTCAGG 59.225 55.000 0.00 0.00 0.00 3.86
66 67 1.533033 GGGGGTGTTTGGTTCAGGG 60.533 63.158 0.00 0.00 0.00 4.45
67 68 1.539665 GGGGTGTTTGGTTCAGGGA 59.460 57.895 0.00 0.00 0.00 4.20
68 69 0.826256 GGGGTGTTTGGTTCAGGGAC 60.826 60.000 0.00 0.00 0.00 4.46
69 70 0.185175 GGGTGTTTGGTTCAGGGACT 59.815 55.000 0.00 0.00 43.88 3.85
70 71 1.411074 GGGTGTTTGGTTCAGGGACTT 60.411 52.381 0.00 0.00 34.60 3.01
71 72 2.384828 GGTGTTTGGTTCAGGGACTTT 58.615 47.619 0.00 0.00 34.60 2.66
72 73 2.764010 GGTGTTTGGTTCAGGGACTTTT 59.236 45.455 0.00 0.00 34.60 2.27
73 74 3.196901 GGTGTTTGGTTCAGGGACTTTTT 59.803 43.478 0.00 0.00 34.60 1.94
74 75 4.403113 GGTGTTTGGTTCAGGGACTTTTTA 59.597 41.667 0.00 0.00 34.60 1.52
75 76 5.451381 GGTGTTTGGTTCAGGGACTTTTTAG 60.451 44.000 0.00 0.00 34.60 1.85
76 77 5.126545 GTGTTTGGTTCAGGGACTTTTTAGT 59.873 40.000 0.00 0.00 34.60 2.24
77 78 5.358725 TGTTTGGTTCAGGGACTTTTTAGTC 59.641 40.000 0.00 0.00 34.60 2.59
78 79 5.382664 TTGGTTCAGGGACTTTTTAGTCT 57.617 39.130 5.40 0.00 34.60 3.24
79 80 4.969484 TGGTTCAGGGACTTTTTAGTCTC 58.031 43.478 5.40 1.37 39.50 3.36
80 81 4.410883 TGGTTCAGGGACTTTTTAGTCTCA 59.589 41.667 7.82 0.00 41.56 3.27
81 82 4.998033 GGTTCAGGGACTTTTTAGTCTCAG 59.002 45.833 7.82 0.09 41.56 3.35
82 83 5.221661 GGTTCAGGGACTTTTTAGTCTCAGA 60.222 44.000 7.82 2.47 41.56 3.27
83 84 5.730296 TCAGGGACTTTTTAGTCTCAGAG 57.270 43.478 7.82 0.00 41.56 3.35
84 85 5.394738 TCAGGGACTTTTTAGTCTCAGAGA 58.605 41.667 7.82 0.00 41.56 3.10
85 86 5.244178 TCAGGGACTTTTTAGTCTCAGAGAC 59.756 44.000 21.47 21.47 41.56 3.36
87 88 6.434652 CAGGGACTTTTTAGTCTCAGAGACTA 59.565 42.308 29.49 29.49 46.80 2.59
88 89 6.661805 AGGGACTTTTTAGTCTCAGAGACTAG 59.338 42.308 30.60 25.27 46.53 2.57
89 90 7.476520 AGGGACTTTTTAGTCTCAGAGACTAGA 60.477 40.741 30.60 26.25 46.53 2.43
98 99 6.584185 GTCTCAGAGACTAGAAAAAGTCCT 57.416 41.667 21.67 0.00 45.86 3.85
99 100 6.988522 GTCTCAGAGACTAGAAAAAGTCCTT 58.011 40.000 21.67 0.00 45.86 3.36
100 101 8.113173 GTCTCAGAGACTAGAAAAAGTCCTTA 57.887 38.462 21.67 0.00 45.86 2.69
101 102 8.578151 GTCTCAGAGACTAGAAAAAGTCCTTAA 58.422 37.037 21.67 0.00 45.86 1.85
102 103 9.144298 TCTCAGAGACTAGAAAAAGTCCTTAAA 57.856 33.333 0.00 0.00 45.86 1.52
103 104 9.765795 CTCAGAGACTAGAAAAAGTCCTTAAAA 57.234 33.333 0.00 0.00 45.86 1.52
113 114 9.562408 AGAAAAAGTCCTTAAAAAGTCTCTAGG 57.438 33.333 0.00 0.00 0.00 3.02
114 115 9.557061 GAAAAAGTCCTTAAAAAGTCTCTAGGA 57.443 33.333 0.00 0.00 0.00 2.94
115 116 9.916360 AAAAAGTCCTTAAAAAGTCTCTAGGAA 57.084 29.630 0.00 0.00 33.87 3.36
116 117 8.905660 AAAGTCCTTAAAAAGTCTCTAGGAAC 57.094 34.615 0.00 0.00 33.87 3.62
117 118 7.006865 AGTCCTTAAAAAGTCTCTAGGAACC 57.993 40.000 0.00 0.00 33.87 3.62
118 119 6.557633 AGTCCTTAAAAAGTCTCTAGGAACCA 59.442 38.462 0.00 0.00 33.87 3.67
119 120 7.072076 AGTCCTTAAAAAGTCTCTAGGAACCAA 59.928 37.037 0.00 0.00 33.87 3.67
120 121 7.718314 GTCCTTAAAAAGTCTCTAGGAACCAAA 59.282 37.037 0.00 0.00 33.87 3.28
121 122 7.718314 TCCTTAAAAAGTCTCTAGGAACCAAAC 59.282 37.037 0.00 0.00 0.00 2.93
122 123 7.501225 CCTTAAAAAGTCTCTAGGAACCAAACA 59.499 37.037 0.00 0.00 0.00 2.83
123 124 6.944234 AAAAAGTCTCTAGGAACCAAACAG 57.056 37.500 0.00 0.00 0.00 3.16
124 125 5.888982 AAAGTCTCTAGGAACCAAACAGA 57.111 39.130 0.00 0.00 0.00 3.41
125 126 5.888982 AAGTCTCTAGGAACCAAACAGAA 57.111 39.130 0.00 0.00 0.00 3.02
126 127 5.476091 AGTCTCTAGGAACCAAACAGAAG 57.524 43.478 0.00 0.00 0.00 2.85
127 128 4.284746 AGTCTCTAGGAACCAAACAGAAGG 59.715 45.833 0.00 0.00 0.00 3.46
128 129 3.583086 TCTCTAGGAACCAAACAGAAGGG 59.417 47.826 0.00 0.00 0.00 3.95
129 130 3.583086 CTCTAGGAACCAAACAGAAGGGA 59.417 47.826 0.00 0.00 0.00 4.20
130 131 2.658807 AGGAACCAAACAGAAGGGAC 57.341 50.000 0.00 0.00 0.00 4.46
148 149 6.301169 AGGGACTTTTTCTACATGGACTAG 57.699 41.667 0.00 0.00 27.25 2.57
149 150 6.023603 AGGGACTTTTTCTACATGGACTAGA 58.976 40.000 0.00 0.00 27.25 2.43
150 151 6.500751 AGGGACTTTTTCTACATGGACTAGAA 59.499 38.462 0.00 0.00 27.25 2.10
151 152 7.017254 AGGGACTTTTTCTACATGGACTAGAAA 59.983 37.037 11.15 11.15 38.08 2.52
152 153 7.664318 GGGACTTTTTCTACATGGACTAGAAAA 59.336 37.037 18.64 18.64 43.60 2.29
157 158 9.847224 TTTTTCTACATGGACTAGAAAAAGACT 57.153 29.630 24.50 0.00 46.05 3.24
158 159 9.490379 TTTTCTACATGGACTAGAAAAAGACTC 57.510 33.333 19.59 0.00 42.90 3.36
159 160 8.423906 TTCTACATGGACTAGAAAAAGACTCT 57.576 34.615 0.00 0.00 29.10 3.24
160 161 9.529823 TTCTACATGGACTAGAAAAAGACTCTA 57.470 33.333 0.00 0.00 29.10 2.43
161 162 8.958506 TCTACATGGACTAGAAAAAGACTCTAC 58.041 37.037 0.00 0.00 0.00 2.59
162 163 7.784470 ACATGGACTAGAAAAAGACTCTACT 57.216 36.000 0.00 0.00 0.00 2.57
163 164 8.196378 ACATGGACTAGAAAAAGACTCTACTT 57.804 34.615 0.00 0.00 0.00 2.24
164 165 8.091449 ACATGGACTAGAAAAAGACTCTACTTG 58.909 37.037 0.00 0.00 0.00 3.16
165 166 7.834881 TGGACTAGAAAAAGACTCTACTTGA 57.165 36.000 0.00 0.00 0.00 3.02
167 168 7.724506 TGGACTAGAAAAAGACTCTACTTGAGA 59.275 37.037 0.00 0.00 45.39 3.27
168 169 8.578151 GGACTAGAAAAAGACTCTACTTGAGAA 58.422 37.037 0.00 0.00 45.39 2.87
219 220 8.905660 AGAAAAAGTCCTAGAACTTCTAAACC 57.094 34.615 0.00 0.00 38.52 3.27
220 221 8.491958 AGAAAAAGTCCTAGAACTTCTAAACCA 58.508 33.333 0.00 0.00 38.52 3.67
221 222 9.117183 GAAAAAGTCCTAGAACTTCTAAACCAA 57.883 33.333 0.00 0.00 38.52 3.67
222 223 9.470399 AAAAAGTCCTAGAACTTCTAAACCAAA 57.530 29.630 0.00 0.00 38.52 3.28
223 224 8.447924 AAAGTCCTAGAACTTCTAAACCAAAC 57.552 34.615 0.00 0.00 38.52 2.93
224 225 7.133133 AGTCCTAGAACTTCTAAACCAAACA 57.867 36.000 0.19 0.00 0.00 2.83
225 226 6.990939 AGTCCTAGAACTTCTAAACCAAACAC 59.009 38.462 0.19 0.00 0.00 3.32
226 227 6.204301 GTCCTAGAACTTCTAAACCAAACACC 59.796 42.308 0.19 0.00 0.00 4.16
227 228 5.472478 CCTAGAACTTCTAAACCAAACACCC 59.528 44.000 0.19 0.00 0.00 4.61
228 229 4.212716 AGAACTTCTAAACCAAACACCCC 58.787 43.478 0.00 0.00 0.00 4.95
245 246 1.449601 CCCTTACCTTGCGATGCGT 60.450 57.895 0.00 0.00 0.00 5.24
269 272 4.081142 GGTGCTATGTTAATTTGCCCCTTT 60.081 41.667 0.00 0.00 0.00 3.11
318 323 3.311110 TTCTTGGAGCCGCCGAGT 61.311 61.111 1.31 0.00 46.77 4.18
362 371 5.312895 TCAAAAATCTCCGAGGAAATGTGA 58.687 37.500 0.00 0.00 0.00 3.58
363 372 5.181245 TCAAAAATCTCCGAGGAAATGTGAC 59.819 40.000 0.00 0.00 0.00 3.67
365 374 4.494091 AATCTCCGAGGAAATGTGACAT 57.506 40.909 0.00 0.00 0.00 3.06
366 375 3.251479 TCTCCGAGGAAATGTGACATG 57.749 47.619 0.00 0.00 0.00 3.21
367 376 1.667724 CTCCGAGGAAATGTGACATGC 59.332 52.381 0.00 0.00 0.00 4.06
368 377 1.003003 TCCGAGGAAATGTGACATGCA 59.997 47.619 0.00 0.00 0.00 3.96
369 378 2.019249 CCGAGGAAATGTGACATGCAT 58.981 47.619 0.00 0.00 0.00 3.96
413 432 1.480789 AGTTTGTGGTTGTTGGACCC 58.519 50.000 0.00 0.00 39.01 4.46
415 434 1.136110 GTTTGTGGTTGTTGGACCCTG 59.864 52.381 0.00 0.00 39.01 4.45
416 435 0.333312 TTGTGGTTGTTGGACCCTGT 59.667 50.000 0.00 0.00 39.01 4.00
417 436 0.333312 TGTGGTTGTTGGACCCTGTT 59.667 50.000 0.00 0.00 39.01 3.16
418 437 1.272760 TGTGGTTGTTGGACCCTGTTT 60.273 47.619 0.00 0.00 39.01 2.83
419 438 1.136110 GTGGTTGTTGGACCCTGTTTG 59.864 52.381 0.00 0.00 39.01 2.93
420 439 0.750249 GGTTGTTGGACCCTGTTTGG 59.250 55.000 0.00 0.00 33.41 3.28
421 440 1.480789 GTTGTTGGACCCTGTTTGGT 58.519 50.000 0.00 0.00 42.79 3.67
422 441 1.828595 GTTGTTGGACCCTGTTTGGTT 59.171 47.619 0.00 0.00 39.24 3.67
423 442 1.770294 TGTTGGACCCTGTTTGGTTC 58.230 50.000 0.00 0.00 39.24 3.62
424 443 1.006043 TGTTGGACCCTGTTTGGTTCA 59.994 47.619 0.00 0.00 42.35 3.18
425 444 2.316108 GTTGGACCCTGTTTGGTTCAT 58.684 47.619 0.00 0.00 43.52 2.57
426 445 3.117474 TGTTGGACCCTGTTTGGTTCATA 60.117 43.478 0.00 0.00 43.52 2.15
427 446 3.885976 TGGACCCTGTTTGGTTCATAA 57.114 42.857 0.00 0.00 39.05 1.90
428 447 3.761897 TGGACCCTGTTTGGTTCATAAG 58.238 45.455 0.00 0.00 39.05 1.73
429 448 3.139397 TGGACCCTGTTTGGTTCATAAGT 59.861 43.478 0.00 0.00 39.05 2.24
430 449 3.756963 GGACCCTGTTTGGTTCATAAGTC 59.243 47.826 0.00 0.00 39.24 3.01
431 450 4.394729 GACCCTGTTTGGTTCATAAGTCA 58.605 43.478 0.00 0.00 39.24 3.41
432 451 4.998051 ACCCTGTTTGGTTCATAAGTCAT 58.002 39.130 0.00 0.00 33.91 3.06
433 452 6.134535 ACCCTGTTTGGTTCATAAGTCATA 57.865 37.500 0.00 0.00 33.91 2.15
434 453 6.180472 ACCCTGTTTGGTTCATAAGTCATAG 58.820 40.000 0.00 0.00 33.91 2.23
435 454 5.590259 CCCTGTTTGGTTCATAAGTCATAGG 59.410 44.000 0.00 0.00 0.00 2.57
436 455 6.414732 CCTGTTTGGTTCATAAGTCATAGGA 58.585 40.000 0.00 0.00 0.00 2.94
437 456 6.316390 CCTGTTTGGTTCATAAGTCATAGGAC 59.684 42.308 0.00 0.00 44.66 3.85
465 484 6.956102 TTTAGTCCCAACTTATAAGTCCCA 57.044 37.500 18.28 1.06 38.57 4.37
466 485 6.956102 TTAGTCCCAACTTATAAGTCCCAA 57.044 37.500 18.28 3.05 38.57 4.12
467 486 5.437191 AGTCCCAACTTATAAGTCCCAAG 57.563 43.478 18.28 6.66 38.57 3.61
468 487 4.850386 AGTCCCAACTTATAAGTCCCAAGT 59.150 41.667 18.28 5.74 38.57 3.16
469 488 5.312443 AGTCCCAACTTATAAGTCCCAAGTT 59.688 40.000 18.28 0.11 41.86 2.66
470 489 5.646793 GTCCCAACTTATAAGTCCCAAGTTC 59.353 44.000 18.28 2.38 39.78 3.01
471 490 4.948004 CCCAACTTATAAGTCCCAAGTTCC 59.052 45.833 18.28 0.00 39.78 3.62
472 491 5.281037 CCCAACTTATAAGTCCCAAGTTCCT 60.281 44.000 18.28 0.00 39.78 3.36
473 492 6.069847 CCCAACTTATAAGTCCCAAGTTCCTA 60.070 42.308 18.28 0.00 39.78 2.94
474 493 7.399634 CCAACTTATAAGTCCCAAGTTCCTAA 58.600 38.462 18.28 0.00 39.78 2.69
475 494 7.886446 CCAACTTATAAGTCCCAAGTTCCTAAA 59.114 37.037 18.28 0.00 39.78 1.85
476 495 9.292195 CAACTTATAAGTCCCAAGTTCCTAAAA 57.708 33.333 18.28 0.00 39.78 1.52
477 496 9.516546 AACTTATAAGTCCCAAGTTCCTAAAAG 57.483 33.333 18.28 0.00 37.87 2.27
478 497 8.107729 ACTTATAAGTCCCAAGTTCCTAAAAGG 58.892 37.037 12.50 0.00 32.86 3.11
479 498 4.808767 AAGTCCCAAGTTCCTAAAAGGT 57.191 40.909 0.00 0.00 36.53 3.50
480 499 4.368565 AGTCCCAAGTTCCTAAAAGGTC 57.631 45.455 0.00 0.00 36.53 3.85
481 500 3.074094 AGTCCCAAGTTCCTAAAAGGTCC 59.926 47.826 0.00 0.00 36.53 4.46
482 501 2.377531 TCCCAAGTTCCTAAAAGGTCCC 59.622 50.000 0.00 0.00 36.53 4.46
483 502 2.378886 CCCAAGTTCCTAAAAGGTCCCT 59.621 50.000 0.00 0.00 36.53 4.20
484 503 3.590182 CCCAAGTTCCTAAAAGGTCCCTA 59.410 47.826 0.00 0.00 36.53 3.53
485 504 4.567116 CCCAAGTTCCTAAAAGGTCCCTAC 60.567 50.000 0.00 0.00 36.53 3.18
505 524 3.739401 CCTATTTGGTTCCTGGGACTT 57.261 47.619 4.84 0.00 0.00 3.01
506 525 4.047627 CCTATTTGGTTCCTGGGACTTT 57.952 45.455 4.84 0.00 0.00 2.66
507 526 4.416516 CCTATTTGGTTCCTGGGACTTTT 58.583 43.478 4.84 0.00 0.00 2.27
508 527 5.576128 CCTATTTGGTTCCTGGGACTTTTA 58.424 41.667 4.84 0.00 0.00 1.52
509 528 6.014012 CCTATTTGGTTCCTGGGACTTTTAA 58.986 40.000 4.84 0.00 0.00 1.52
510 529 6.152831 CCTATTTGGTTCCTGGGACTTTTAAG 59.847 42.308 4.84 0.00 0.00 1.85
511 530 4.529716 TTGGTTCCTGGGACTTTTAAGT 57.470 40.909 4.84 0.00 43.16 2.24
524 543 5.899631 ACTTTTAAGTCCCTACAAGACCA 57.100 39.130 0.00 0.00 32.86 4.02
525 544 6.449830 ACTTTTAAGTCCCTACAAGACCAT 57.550 37.500 0.00 0.00 32.86 3.55
526 545 7.563724 ACTTTTAAGTCCCTACAAGACCATA 57.436 36.000 0.00 0.00 32.86 2.74
527 546 8.159229 ACTTTTAAGTCCCTACAAGACCATAT 57.841 34.615 0.00 0.00 32.86 1.78
528 547 8.612145 ACTTTTAAGTCCCTACAAGACCATATT 58.388 33.333 0.00 0.00 32.86 1.28
530 549 9.895138 TTTTAAGTCCCTACAAGACCATATTAC 57.105 33.333 0.00 0.00 34.67 1.89
531 550 8.612486 TTAAGTCCCTACAAGACCATATTACA 57.388 34.615 0.00 0.00 34.67 2.41
532 551 7.504926 AAGTCCCTACAAGACCATATTACAA 57.495 36.000 0.00 0.00 34.67 2.41
533 552 6.885922 AGTCCCTACAAGACCATATTACAAC 58.114 40.000 0.00 0.00 34.67 3.32
534 553 6.672657 AGTCCCTACAAGACCATATTACAACT 59.327 38.462 0.00 0.00 34.67 3.16
535 554 7.842743 AGTCCCTACAAGACCATATTACAACTA 59.157 37.037 0.00 0.00 34.67 2.24
536 555 8.648693 GTCCCTACAAGACCATATTACAACTAT 58.351 37.037 0.00 0.00 0.00 2.12
537 556 9.886337 TCCCTACAAGACCATATTACAACTATA 57.114 33.333 0.00 0.00 0.00 1.31
543 562 9.490379 CAAGACCATATTACAACTATAAGTCCC 57.510 37.037 0.00 0.00 0.00 4.46
544 563 9.448587 AAGACCATATTACAACTATAAGTCCCT 57.551 33.333 0.00 0.00 0.00 4.20
555 574 9.102453 ACAACTATAAGTCCCTATAAATCCCTC 57.898 37.037 0.00 0.00 0.00 4.30
556 575 8.541234 CAACTATAAGTCCCTATAAATCCCTCC 58.459 40.741 0.00 0.00 0.00 4.30
557 576 8.025299 ACTATAAGTCCCTATAAATCCCTCCT 57.975 38.462 0.00 0.00 0.00 3.69
558 577 8.474268 ACTATAAGTCCCTATAAATCCCTCCTT 58.526 37.037 0.00 0.00 0.00 3.36
561 580 7.634526 AAGTCCCTATAAATCCCTCCTTAAG 57.365 40.000 0.00 0.00 0.00 1.85
562 581 6.946526 AGTCCCTATAAATCCCTCCTTAAGA 58.053 40.000 3.36 0.00 0.00 2.10
563 582 7.020009 AGTCCCTATAAATCCCTCCTTAAGAG 58.980 42.308 3.36 0.00 42.83 2.85
564 583 6.788456 GTCCCTATAAATCCCTCCTTAAGAGT 59.212 42.308 3.36 0.00 41.47 3.24
565 584 7.017531 TCCCTATAAATCCCTCCTTAAGAGTC 58.982 42.308 3.36 0.00 41.47 3.36
566 585 7.020009 CCCTATAAATCCCTCCTTAAGAGTCT 58.980 42.308 3.36 0.00 41.47 3.24
567 586 7.514473 CCCTATAAATCCCTCCTTAAGAGTCTT 59.486 40.741 10.87 10.87 41.47 3.01
568 587 9.603189 CCTATAAATCCCTCCTTAAGAGTCTTA 57.397 37.037 8.59 8.59 41.47 2.10
573 592 7.996758 ATCCCTCCTTAAGAGTCTTATTTCA 57.003 36.000 13.34 0.00 41.47 2.69
574 593 7.996758 TCCCTCCTTAAGAGTCTTATTTCAT 57.003 36.000 13.34 0.00 41.47 2.57
575 594 9.676129 ATCCCTCCTTAAGAGTCTTATTTCATA 57.324 33.333 13.34 0.00 41.47 2.15
576 595 9.502035 TCCCTCCTTAAGAGTCTTATTTCATAA 57.498 33.333 13.34 0.00 41.47 1.90
577 596 9.771534 CCCTCCTTAAGAGTCTTATTTCATAAG 57.228 37.037 13.34 7.71 41.47 1.73
590 609 9.983024 TCTTATTTCATAAGTTCCAAATACCCA 57.017 29.630 3.93 0.00 42.21 4.51
592 611 9.762381 TTATTTCATAAGTTCCAAATACCCACT 57.238 29.630 0.00 0.00 0.00 4.00
593 612 8.664669 ATTTCATAAGTTCCAAATACCCACTT 57.335 30.769 0.00 0.00 0.00 3.16
594 613 8.485578 TTTCATAAGTTCCAAATACCCACTTT 57.514 30.769 0.00 0.00 0.00 2.66
595 614 9.589461 TTTCATAAGTTCCAAATACCCACTTTA 57.411 29.630 0.00 0.00 0.00 1.85
596 615 9.589461 TTCATAAGTTCCAAATACCCACTTTAA 57.411 29.630 0.00 0.00 0.00 1.52
597 616 9.238368 TCATAAGTTCCAAATACCCACTTTAAG 57.762 33.333 0.00 0.00 0.00 1.85
598 617 9.020731 CATAAGTTCCAAATACCCACTTTAAGT 57.979 33.333 0.00 0.00 0.00 2.24
599 618 7.520451 AAGTTCCAAATACCCACTTTAAGTC 57.480 36.000 0.00 0.00 0.00 3.01
600 619 6.008331 AGTTCCAAATACCCACTTTAAGTCC 58.992 40.000 0.00 0.00 0.00 3.85
601 620 5.853572 TCCAAATACCCACTTTAAGTCCT 57.146 39.130 0.00 0.00 0.00 3.85
602 621 6.208840 TCCAAATACCCACTTTAAGTCCTT 57.791 37.500 0.00 0.00 0.00 3.36
603 622 7.332433 TCCAAATACCCACTTTAAGTCCTTA 57.668 36.000 0.00 0.00 0.00 2.69
604 623 7.935405 TCCAAATACCCACTTTAAGTCCTTAT 58.065 34.615 0.00 0.00 0.00 1.73
605 624 9.060137 TCCAAATACCCACTTTAAGTCCTTATA 57.940 33.333 0.00 0.00 0.00 0.98
606 625 9.689501 CCAAATACCCACTTTAAGTCCTTATAA 57.310 33.333 0.00 0.00 0.00 0.98
610 629 6.955364 ACCCACTTTAAGTCCTTATAAGTCC 58.045 40.000 11.50 1.62 31.03 3.85
611 630 6.069789 ACCCACTTTAAGTCCTTATAAGTCCC 60.070 42.308 11.50 0.00 31.03 4.46
612 631 6.158169 CCCACTTTAAGTCCTTATAAGTCCCT 59.842 42.308 11.50 1.51 31.03 4.20
613 632 7.311739 CCCACTTTAAGTCCTTATAAGTCCCTT 60.312 40.741 11.50 11.29 31.03 3.95
614 633 8.107729 CCACTTTAAGTCCTTATAAGTCCCTTT 58.892 37.037 11.50 2.04 31.03 3.11
615 634 9.516546 CACTTTAAGTCCTTATAAGTCCCTTTT 57.483 33.333 11.50 0.84 31.03 2.27
616 635 9.516546 ACTTTAAGTCCTTATAAGTCCCTTTTG 57.483 33.333 11.50 6.47 29.26 2.44
617 636 9.516546 CTTTAAGTCCTTATAAGTCCCTTTTGT 57.483 33.333 11.50 0.00 0.00 2.83
618 637 9.871175 TTTAAGTCCTTATAAGTCCCTTTTGTT 57.129 29.630 11.50 0.00 0.00 2.83
619 638 9.871175 TTAAGTCCTTATAAGTCCCTTTTGTTT 57.129 29.630 11.50 0.00 0.00 2.83
620 639 7.761038 AGTCCTTATAAGTCCCTTTTGTTTG 57.239 36.000 11.50 0.00 0.00 2.93
621 640 6.719829 AGTCCTTATAAGTCCCTTTTGTTTGG 59.280 38.462 11.50 0.00 0.00 3.28
622 641 6.492429 GTCCTTATAAGTCCCTTTTGTTTGGT 59.508 38.462 11.50 0.00 0.00 3.67
623 642 7.014905 GTCCTTATAAGTCCCTTTTGTTTGGTT 59.985 37.037 11.50 0.00 0.00 3.67
624 643 7.565768 TCCTTATAAGTCCCTTTTGTTTGGTTT 59.434 33.333 11.50 0.00 0.00 3.27
625 644 8.862085 CCTTATAAGTCCCTTTTGTTTGGTTTA 58.138 33.333 11.50 0.00 0.00 2.01
626 645 9.908152 CTTATAAGTCCCTTTTGTTTGGTTTAG 57.092 33.333 4.18 0.00 0.00 1.85
627 646 9.643735 TTATAAGTCCCTTTTGTTTGGTTTAGA 57.356 29.630 0.00 0.00 0.00 2.10
628 647 8.721133 ATAAGTCCCTTTTGTTTGGTTTAGAT 57.279 30.769 0.00 0.00 0.00 1.98
629 648 6.405278 AGTCCCTTTTGTTTGGTTTAGATG 57.595 37.500 0.00 0.00 0.00 2.90
630 649 5.304357 AGTCCCTTTTGTTTGGTTTAGATGG 59.696 40.000 0.00 0.00 0.00 3.51
631 650 4.591072 TCCCTTTTGTTTGGTTTAGATGGG 59.409 41.667 0.00 0.00 0.00 4.00
632 651 4.591072 CCCTTTTGTTTGGTTTAGATGGGA 59.409 41.667 0.00 0.00 31.98 4.37
633 652 5.510690 CCCTTTTGTTTGGTTTAGATGGGAC 60.511 44.000 0.00 0.00 31.98 4.46
634 653 5.304357 CCTTTTGTTTGGTTTAGATGGGACT 59.696 40.000 0.00 0.00 0.00 3.85
635 654 6.183360 CCTTTTGTTTGGTTTAGATGGGACTT 60.183 38.462 0.00 0.00 0.00 3.01
636 655 7.014808 CCTTTTGTTTGGTTTAGATGGGACTTA 59.985 37.037 0.00 0.00 0.00 2.24
637 656 8.485578 TTTTGTTTGGTTTAGATGGGACTTAT 57.514 30.769 0.00 0.00 0.00 1.73
638 657 9.589461 TTTTGTTTGGTTTAGATGGGACTTATA 57.411 29.630 0.00 0.00 0.00 0.98
639 658 8.801882 TTGTTTGGTTTAGATGGGACTTATAG 57.198 34.615 0.00 0.00 0.00 1.31
640 659 7.343357 TGTTTGGTTTAGATGGGACTTATAGG 58.657 38.462 0.00 0.00 0.00 2.57
641 660 6.509523 TTGGTTTAGATGGGACTTATAGGG 57.490 41.667 0.00 0.00 0.00 3.53
642 661 5.795079 TGGTTTAGATGGGACTTATAGGGA 58.205 41.667 0.00 0.00 0.00 4.20
643 662 5.605488 TGGTTTAGATGGGACTTATAGGGAC 59.395 44.000 0.00 0.00 0.00 4.46
644 663 5.845065 GGTTTAGATGGGACTTATAGGGACT 59.155 44.000 0.00 0.00 46.37 3.85
645 664 6.329460 GGTTTAGATGGGACTTATAGGGACTT 59.671 42.308 0.00 0.00 41.75 3.01
646 665 7.147355 GGTTTAGATGGGACTTATAGGGACTTT 60.147 40.741 0.00 0.00 41.75 2.66
647 666 8.272889 GTTTAGATGGGACTTATAGGGACTTTT 58.727 37.037 0.00 0.00 41.75 2.27
648 667 6.910259 AGATGGGACTTATAGGGACTTTTT 57.090 37.500 0.00 0.00 41.75 1.94
671 690 7.891498 TTTAAGTCCCTAAGCCAATAAATCC 57.109 36.000 0.00 0.00 0.00 3.01
672 691 5.734031 AAGTCCCTAAGCCAATAAATCCT 57.266 39.130 0.00 0.00 0.00 3.24
673 692 5.734031 AGTCCCTAAGCCAATAAATCCTT 57.266 39.130 0.00 0.00 0.00 3.36
674 693 5.449553 AGTCCCTAAGCCAATAAATCCTTG 58.550 41.667 0.00 0.00 0.00 3.61
675 694 4.584743 GTCCCTAAGCCAATAAATCCTTGG 59.415 45.833 0.00 0.00 44.94 3.61
676 695 4.480537 TCCCTAAGCCAATAAATCCTTGGA 59.519 41.667 6.27 0.00 44.95 3.53
677 696 5.043732 TCCCTAAGCCAATAAATCCTTGGAA 60.044 40.000 6.27 0.00 44.95 3.53
678 697 5.660864 CCCTAAGCCAATAAATCCTTGGAAA 59.339 40.000 6.27 0.00 44.95 3.13
679 698 6.406961 CCCTAAGCCAATAAATCCTTGGAAAC 60.407 42.308 6.27 0.00 44.95 2.78
680 699 6.154363 CCTAAGCCAATAAATCCTTGGAAACA 59.846 38.462 6.27 0.00 44.95 2.83
708 727 5.726793 ACCCTCAGAGTTGTATGTATCCTTT 59.273 40.000 0.00 0.00 0.00 3.11
709 728 6.051717 CCCTCAGAGTTGTATGTATCCTTTG 58.948 44.000 0.00 0.00 0.00 2.77
710 729 6.051717 CCTCAGAGTTGTATGTATCCTTTGG 58.948 44.000 0.00 0.00 0.00 3.28
711 730 6.352222 CCTCAGAGTTGTATGTATCCTTTGGT 60.352 42.308 0.00 0.00 0.00 3.67
712 731 6.640518 TCAGAGTTGTATGTATCCTTTGGTC 58.359 40.000 0.00 0.00 0.00 4.02
713 732 5.817816 CAGAGTTGTATGTATCCTTTGGTCC 59.182 44.000 0.00 0.00 0.00 4.46
714 733 5.726793 AGAGTTGTATGTATCCTTTGGTCCT 59.273 40.000 0.00 0.00 0.00 3.85
715 734 6.215636 AGAGTTGTATGTATCCTTTGGTCCTT 59.784 38.462 0.00 0.00 0.00 3.36
718 737 3.953542 ATGTATCCTTTGGTCCTTCCC 57.046 47.619 0.00 0.00 34.77 3.97
740 792 1.451936 GTCCTCCACTGTGGTGCTT 59.548 57.895 25.15 0.00 41.75 3.91
786 839 0.950555 TGTGATCTTGTCCTGTGCGC 60.951 55.000 0.00 0.00 0.00 6.09
877 1015 0.840617 TAGCCAGTTTCCACCACACA 59.159 50.000 0.00 0.00 0.00 3.72
904 1042 2.598439 GCAGCAAGATGTAGATTTCGCG 60.598 50.000 0.00 0.00 0.00 5.87
1384 1591 0.393820 TGCTGCGATCAGGCATCATA 59.606 50.000 0.00 0.00 42.99 2.15
1389 1596 1.134995 GCGATCAGGCATCATATCGGA 60.135 52.381 8.71 0.00 41.08 4.55
1507 2177 3.376636 TGATCGGGATGGTAGTGGTTAA 58.623 45.455 0.00 0.00 0.00 2.01
1560 2272 3.099905 CAGATCTGGTGGGAAGTGTCTA 58.900 50.000 15.38 0.00 0.00 2.59
1677 2518 8.229137 GTGGTAAGTAGTAGTATGTGATCGATC 58.771 40.741 18.72 18.72 0.00 3.69
1678 2519 7.935210 TGGTAAGTAGTAGTATGTGATCGATCA 59.065 37.037 23.99 23.99 0.00 2.92
1679 2520 8.781196 GGTAAGTAGTAGTATGTGATCGATCAA 58.219 37.037 28.83 18.74 38.75 2.57
1680 2521 9.596677 GTAAGTAGTAGTATGTGATCGATCAAC 57.403 37.037 28.83 22.37 38.75 3.18
1760 2711 0.465460 GTGGTGTCAGGCACTTGGAA 60.465 55.000 4.85 0.00 46.86 3.53
1785 2736 5.080337 TCCTGTTGATAGACTTGTGAGAGT 58.920 41.667 0.00 0.00 0.00 3.24
1935 3034 8.703604 TGCTTAAGAGAACATGTAACTGATAC 57.296 34.615 6.67 0.00 34.92 2.24
1944 3043 7.819900 AGAACATGTAACTGATACCTGAAGAAC 59.180 37.037 0.00 0.00 34.74 3.01
2000 3106 0.912486 GTGGAATGAGGCAGGTAGGT 59.088 55.000 0.00 0.00 0.00 3.08
2098 3209 8.814038 AAAGTTTTAGCAGGTCTCATATGATT 57.186 30.769 5.72 0.00 0.00 2.57
2291 3425 7.063544 GTCTGATACTTTCCAATATATGTCGCC 59.936 40.741 0.00 0.00 0.00 5.54
2292 3426 7.004555 TGATACTTTCCAATATATGTCGCCT 57.995 36.000 0.00 0.00 0.00 5.52
2293 3427 7.450074 TGATACTTTCCAATATATGTCGCCTT 58.550 34.615 0.00 0.00 0.00 4.35
2294 3428 7.936847 TGATACTTTCCAATATATGTCGCCTTT 59.063 33.333 0.00 0.00 0.00 3.11
2295 3429 8.691661 ATACTTTCCAATATATGTCGCCTTTT 57.308 30.769 0.00 0.00 0.00 2.27
2296 3430 7.404671 ACTTTCCAATATATGTCGCCTTTTT 57.595 32.000 0.00 0.00 0.00 1.94
2406 3540 4.260985 TCCACGCATAACATCTGACAAAT 58.739 39.130 0.00 0.00 0.00 2.32
2573 3735 7.148239 CCTGTATTGGCCTCTAACTAAAACTTG 60.148 40.741 3.32 0.00 0.00 3.16
2613 3777 7.565680 AGAAACTCGGTCTTATTTCATATGGT 58.434 34.615 2.13 0.00 34.22 3.55
2634 3805 7.910441 TGGTGTATGATGTATATGCTTCATG 57.090 36.000 23.65 0.00 35.66 3.07
2816 4067 3.202906 GCTCTCTGTTTGTTGGTGTGTA 58.797 45.455 0.00 0.00 0.00 2.90
2876 4127 3.073798 TGGAGGAAATACTGTCAGGCAAA 59.926 43.478 4.53 0.00 0.00 3.68
2901 4152 4.630894 AAATTCGAGCACTTGACAAACA 57.369 36.364 0.00 0.00 0.00 2.83
2961 4219 0.849094 TGGCCCCCACCTATGAAGTT 60.849 55.000 0.00 0.00 0.00 2.66
3008 4268 4.538738 TGGCCCTTTGTAGTAACAACTTT 58.461 39.130 0.00 0.00 45.18 2.66
3009 4269 4.581409 TGGCCCTTTGTAGTAACAACTTTC 59.419 41.667 0.00 0.00 45.18 2.62
3010 4270 4.581409 GGCCCTTTGTAGTAACAACTTTCA 59.419 41.667 0.00 0.00 45.18 2.69
3036 4296 6.479990 CAGAATAATATCTGTTGCTGTTCGGA 59.520 38.462 0.00 0.00 41.54 4.55
3038 4298 3.895232 ATATCTGTTGCTGTTCGGACT 57.105 42.857 0.00 0.00 0.00 3.85
3043 4303 1.202639 TGTTGCTGTTCGGACTGATGT 60.203 47.619 4.68 0.00 0.00 3.06
3058 4318 4.003648 ACTGATGTGAACCGAATTTCCTC 58.996 43.478 0.00 0.00 0.00 3.71
3059 4319 3.343617 TGATGTGAACCGAATTTCCTCC 58.656 45.455 0.00 0.00 0.00 4.30
3060 4320 3.009033 TGATGTGAACCGAATTTCCTCCT 59.991 43.478 0.00 0.00 0.00 3.69
3063 4323 2.095212 GTGAACCGAATTTCCTCCTTGC 60.095 50.000 0.00 0.00 0.00 4.01
3101 4371 2.509569 TCACACAGGAGAGAGACTCAC 58.490 52.381 5.02 0.00 46.54 3.51
3105 4375 3.013921 CACAGGAGAGAGACTCACCTAC 58.986 54.545 15.05 2.24 46.82 3.18
3118 4391 1.274167 TCACCTACAAGTTACTGGCCG 59.726 52.381 0.00 0.00 0.00 6.13
3136 4409 0.588252 CGGCCCATTTAGATTCTGCG 59.412 55.000 0.00 0.00 0.00 5.18
3226 4499 2.689646 GGAACCTTCCAGAAAGTCTCG 58.310 52.381 0.00 0.00 46.76 4.04
3238 4511 2.508586 AAGTCTCGGAGCCGGCTTTC 62.509 60.000 33.34 24.01 40.25 2.62
3351 4628 9.559958 AATACTATTGAAAAACAATTCTGCTCG 57.440 29.630 0.00 0.00 45.60 5.03
3382 4660 9.921637 TTTGTTCATATATTCAAAAGGGTTCAC 57.078 29.630 5.53 0.00 0.00 3.18
3383 4661 8.877864 TGTTCATATATTCAAAAGGGTTCACT 57.122 30.769 0.00 0.00 0.00 3.41
3396 4674 7.809546 AAAGGGTTCACTTTTTCAAACAAAA 57.190 28.000 0.00 0.00 37.39 2.44
3498 4777 8.442632 TTTTCACAAATGCCAAAATGTTCATA 57.557 26.923 0.00 0.00 0.00 2.15
3499 4778 8.442632 TTTCACAAATGCCAAAATGTTCATAA 57.557 26.923 0.00 0.00 0.00 1.90
3554 4833 6.347696 TGCTTCCATTTTCTGAATTTTGTGT 58.652 32.000 0.00 0.00 0.00 3.72
3575 4854 9.976255 TTGTGTACATATTAAAAGTATGTTCGC 57.024 29.630 0.00 7.75 41.58 4.70
3576 4855 9.152595 TGTGTACATATTAAAAGTATGTTCGCA 57.847 29.630 12.65 12.65 42.57 5.10
3594 4873 5.947503 TCGCATTTTCAAAAAGTGTTCTG 57.052 34.783 0.00 0.00 0.00 3.02
3597 4876 6.587990 TCGCATTTTCAAAAAGTGTTCTGAAA 59.412 30.769 0.00 0.00 36.32 2.69
3650 4929 0.044092 TTCATGGCCTCCTGTAGGGA 59.956 55.000 3.32 0.00 46.65 4.20
3655 4934 1.826709 GCCTCCTGTAGGGAAGCTC 59.173 63.158 0.00 0.00 45.56 4.09
3656 4935 2.022240 GCCTCCTGTAGGGAAGCTCG 62.022 65.000 0.00 0.00 45.56 5.03
3670 4949 1.108776 AGCTCGTATTCGGCACCTTA 58.891 50.000 7.65 0.00 36.34 2.69
3671 4950 1.479323 AGCTCGTATTCGGCACCTTAA 59.521 47.619 7.65 0.00 36.34 1.85
3672 4951 2.093869 AGCTCGTATTCGGCACCTTAAA 60.094 45.455 7.65 0.00 36.34 1.52
3673 4952 2.030091 GCTCGTATTCGGCACCTTAAAC 59.970 50.000 0.00 0.00 37.69 2.01
3674 4953 3.518590 CTCGTATTCGGCACCTTAAACT 58.481 45.455 0.00 0.00 37.69 2.66
3675 4954 3.514645 TCGTATTCGGCACCTTAAACTC 58.485 45.455 0.00 0.00 37.69 3.01
3676 4955 2.606272 CGTATTCGGCACCTTAAACTCC 59.394 50.000 0.00 0.00 0.00 3.85
3677 4956 2.871096 ATTCGGCACCTTAAACTCCA 57.129 45.000 0.00 0.00 0.00 3.86
3678 4957 2.642154 TTCGGCACCTTAAACTCCAA 57.358 45.000 0.00 0.00 0.00 3.53
3679 4958 2.642154 TCGGCACCTTAAACTCCAAA 57.358 45.000 0.00 0.00 0.00 3.28
3680 4959 2.223745 TCGGCACCTTAAACTCCAAAC 58.776 47.619 0.00 0.00 0.00 2.93
3681 4960 1.268625 CGGCACCTTAAACTCCAAACC 59.731 52.381 0.00 0.00 0.00 3.27
3682 4961 2.594131 GGCACCTTAAACTCCAAACCT 58.406 47.619 0.00 0.00 0.00 3.50
3683 4962 2.963101 GGCACCTTAAACTCCAAACCTT 59.037 45.455 0.00 0.00 0.00 3.50
3684 4963 4.146564 GGCACCTTAAACTCCAAACCTTA 58.853 43.478 0.00 0.00 0.00 2.69
3690 4969 7.067737 CACCTTAAACTCCAAACCTTAGACAAA 59.932 37.037 0.00 0.00 0.00 2.83
3702 4981 3.440522 CCTTAGACAAAAAGCACTAGGGC 59.559 47.826 9.62 9.62 0.00 5.19
3720 4999 1.940613 GGCGAACTCACTTTGTTGTCT 59.059 47.619 0.00 0.00 0.00 3.41
3731 5010 7.227512 ACTCACTTTGTTGTCTATTTTGAGGAG 59.772 37.037 0.00 0.00 33.70 3.69
3766 5045 7.977789 TTGATCTTTCTTGTAGCACAACATA 57.022 32.000 0.00 0.00 33.96 2.29
3768 5047 7.806690 TGATCTTTCTTGTAGCACAACATAAC 58.193 34.615 0.00 0.00 33.96 1.89
3769 5048 7.661437 TGATCTTTCTTGTAGCACAACATAACT 59.339 33.333 0.00 0.00 33.96 2.24
3770 5049 7.801716 TCTTTCTTGTAGCACAACATAACTT 57.198 32.000 0.00 0.00 33.96 2.66
3771 5050 7.639039 TCTTTCTTGTAGCACAACATAACTTG 58.361 34.615 0.00 0.00 33.96 3.16
3772 5051 6.935741 TTCTTGTAGCACAACATAACTTGT 57.064 33.333 0.00 0.00 41.53 3.16
3773 5052 8.439993 TTTCTTGTAGCACAACATAACTTGTA 57.560 30.769 0.00 0.00 37.68 2.41
3774 5053 7.416154 TCTTGTAGCACAACATAACTTGTAC 57.584 36.000 0.00 0.00 37.68 2.90
3775 5054 6.987404 TCTTGTAGCACAACATAACTTGTACA 59.013 34.615 0.00 0.00 37.68 2.90
3776 5055 6.779115 TGTAGCACAACATAACTTGTACAG 57.221 37.500 0.00 0.00 37.68 2.74
3779 5060 6.780706 AGCACAACATAACTTGTACAGTAC 57.219 37.500 3.49 3.49 37.68 2.73
3788 5069 9.430399 ACATAACTTGTACAGTACATATACCCT 57.570 33.333 14.34 0.00 38.68 4.34
3864 5146 9.956797 CACAATAAAAAGTGAACTTGAACAAAG 57.043 29.630 0.00 0.00 38.69 2.77
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.474806 GCAATCTACTGCGCGTGT 58.525 55.556 8.43 10.13 31.50 4.49
6 7 6.487689 AGAACTGTTTTAGCAATCTACTGC 57.512 37.500 0.00 0.00 42.97 4.40
7 8 6.366332 ACGAGAACTGTTTTAGCAATCTACTG 59.634 38.462 0.00 0.00 0.00 2.74
8 9 6.456501 ACGAGAACTGTTTTAGCAATCTACT 58.543 36.000 0.00 0.00 0.00 2.57
9 10 6.707599 ACGAGAACTGTTTTAGCAATCTAC 57.292 37.500 0.00 0.00 0.00 2.59
10 11 6.367969 GGAACGAGAACTGTTTTAGCAATCTA 59.632 38.462 0.00 0.00 0.00 1.98
14 15 4.272504 CAGGAACGAGAACTGTTTTAGCAA 59.727 41.667 0.00 0.00 0.00 3.91
15 16 3.807622 CAGGAACGAGAACTGTTTTAGCA 59.192 43.478 0.00 0.00 0.00 3.49
16 17 3.186613 CCAGGAACGAGAACTGTTTTAGC 59.813 47.826 0.00 0.00 0.00 3.09
17 18 4.377897 ACCAGGAACGAGAACTGTTTTAG 58.622 43.478 0.00 0.00 0.00 1.85
18 19 4.411256 ACCAGGAACGAGAACTGTTTTA 57.589 40.909 0.00 0.00 0.00 1.52
19 20 3.277142 ACCAGGAACGAGAACTGTTTT 57.723 42.857 0.00 0.00 0.00 2.43
20 21 3.387050 ACTACCAGGAACGAGAACTGTTT 59.613 43.478 0.00 0.00 0.00 2.83
21 22 2.963782 ACTACCAGGAACGAGAACTGTT 59.036 45.455 0.00 0.00 0.00 3.16
22 23 2.595238 ACTACCAGGAACGAGAACTGT 58.405 47.619 0.00 0.00 0.00 3.55
23 24 4.985538 ATACTACCAGGAACGAGAACTG 57.014 45.455 0.00 0.00 0.00 3.16
24 25 5.997384 AAATACTACCAGGAACGAGAACT 57.003 39.130 0.00 0.00 0.00 3.01
25 26 6.271566 CCTAAATACTACCAGGAACGAGAAC 58.728 44.000 0.00 0.00 0.00 3.01
26 27 5.361857 CCCTAAATACTACCAGGAACGAGAA 59.638 44.000 0.00 0.00 0.00 2.87
27 28 4.891756 CCCTAAATACTACCAGGAACGAGA 59.108 45.833 0.00 0.00 0.00 4.04
28 29 4.038883 CCCCTAAATACTACCAGGAACGAG 59.961 50.000 0.00 0.00 0.00 4.18
29 30 3.962718 CCCCTAAATACTACCAGGAACGA 59.037 47.826 0.00 0.00 0.00 3.85
30 31 3.070590 CCCCCTAAATACTACCAGGAACG 59.929 52.174 0.00 0.00 0.00 3.95
31 32 4.042884 ACCCCCTAAATACTACCAGGAAC 58.957 47.826 0.00 0.00 0.00 3.62
32 33 4.042174 CACCCCCTAAATACTACCAGGAA 58.958 47.826 0.00 0.00 0.00 3.36
33 34 3.014342 ACACCCCCTAAATACTACCAGGA 59.986 47.826 0.00 0.00 0.00 3.86
34 35 3.390819 ACACCCCCTAAATACTACCAGG 58.609 50.000 0.00 0.00 0.00 4.45
35 36 5.190677 CAAACACCCCCTAAATACTACCAG 58.809 45.833 0.00 0.00 0.00 4.00
36 37 4.018233 CCAAACACCCCCTAAATACTACCA 60.018 45.833 0.00 0.00 0.00 3.25
37 38 4.018141 ACCAAACACCCCCTAAATACTACC 60.018 45.833 0.00 0.00 0.00 3.18
38 39 5.183530 ACCAAACACCCCCTAAATACTAC 57.816 43.478 0.00 0.00 0.00 2.73
39 40 5.312708 TGAACCAAACACCCCCTAAATACTA 59.687 40.000 0.00 0.00 0.00 1.82
40 41 4.106663 TGAACCAAACACCCCCTAAATACT 59.893 41.667 0.00 0.00 0.00 2.12
41 42 4.409187 TGAACCAAACACCCCCTAAATAC 58.591 43.478 0.00 0.00 0.00 1.89
42 43 4.509482 CCTGAACCAAACACCCCCTAAATA 60.509 45.833 0.00 0.00 0.00 1.40
43 44 3.506398 CTGAACCAAACACCCCCTAAAT 58.494 45.455 0.00 0.00 0.00 1.40
44 45 2.425102 CCTGAACCAAACACCCCCTAAA 60.425 50.000 0.00 0.00 0.00 1.85
45 46 1.146152 CCTGAACCAAACACCCCCTAA 59.854 52.381 0.00 0.00 0.00 2.69
46 47 0.774908 CCTGAACCAAACACCCCCTA 59.225 55.000 0.00 0.00 0.00 3.53
47 48 1.541672 CCTGAACCAAACACCCCCT 59.458 57.895 0.00 0.00 0.00 4.79
48 49 1.533033 CCCTGAACCAAACACCCCC 60.533 63.158 0.00 0.00 0.00 5.40
49 50 0.826256 GTCCCTGAACCAAACACCCC 60.826 60.000 0.00 0.00 0.00 4.95
50 51 0.185175 AGTCCCTGAACCAAACACCC 59.815 55.000 0.00 0.00 0.00 4.61
51 52 2.067365 AAGTCCCTGAACCAAACACC 57.933 50.000 0.00 0.00 0.00 4.16
52 53 4.465632 AAAAAGTCCCTGAACCAAACAC 57.534 40.909 0.00 0.00 0.00 3.32
53 54 5.265989 ACTAAAAAGTCCCTGAACCAAACA 58.734 37.500 0.00 0.00 0.00 2.83
54 55 5.593095 AGACTAAAAAGTCCCTGAACCAAAC 59.407 40.000 2.00 0.00 39.50 2.93
55 56 5.762279 AGACTAAAAAGTCCCTGAACCAAA 58.238 37.500 2.00 0.00 39.50 3.28
56 57 5.104277 TGAGACTAAAAAGTCCCTGAACCAA 60.104 40.000 2.00 0.00 39.50 3.67
57 58 4.410883 TGAGACTAAAAAGTCCCTGAACCA 59.589 41.667 2.00 0.00 39.50 3.67
58 59 4.969484 TGAGACTAAAAAGTCCCTGAACC 58.031 43.478 2.00 0.00 39.50 3.62
59 60 5.855045 TCTGAGACTAAAAAGTCCCTGAAC 58.145 41.667 2.00 0.00 39.50 3.18
60 61 5.839063 TCTCTGAGACTAAAAAGTCCCTGAA 59.161 40.000 2.58 0.00 39.50 3.02
61 62 5.244178 GTCTCTGAGACTAAAAAGTCCCTGA 59.756 44.000 26.44 0.16 41.88 3.86
62 63 5.474825 GTCTCTGAGACTAAAAAGTCCCTG 58.525 45.833 26.44 0.00 41.88 4.45
63 64 5.731957 GTCTCTGAGACTAAAAAGTCCCT 57.268 43.478 26.44 0.00 41.88 4.20
75 76 6.584185 AGGACTTTTTCTAGTCTCTGAGAC 57.416 41.667 26.43 26.43 45.38 3.36
76 77 8.707796 TTAAGGACTTTTTCTAGTCTCTGAGA 57.292 34.615 2.58 2.58 43.26 3.27
77 78 9.765795 TTTTAAGGACTTTTTCTAGTCTCTGAG 57.234 33.333 0.00 0.00 43.26 3.35
87 88 9.562408 CCTAGAGACTTTTTAAGGACTTTTTCT 57.438 33.333 0.00 0.00 0.00 2.52
88 89 9.557061 TCCTAGAGACTTTTTAAGGACTTTTTC 57.443 33.333 0.00 0.00 0.00 2.29
89 90 9.916360 TTCCTAGAGACTTTTTAAGGACTTTTT 57.084 29.630 0.00 0.00 32.98 1.94
90 91 9.339850 GTTCCTAGAGACTTTTTAAGGACTTTT 57.660 33.333 0.00 0.00 32.98 2.27
91 92 7.937942 GGTTCCTAGAGACTTTTTAAGGACTTT 59.062 37.037 0.00 0.00 32.98 2.66
92 93 7.072076 TGGTTCCTAGAGACTTTTTAAGGACTT 59.928 37.037 0.00 0.00 32.98 3.01
93 94 6.557633 TGGTTCCTAGAGACTTTTTAAGGACT 59.442 38.462 0.00 0.00 32.98 3.85
94 95 6.766429 TGGTTCCTAGAGACTTTTTAAGGAC 58.234 40.000 0.00 0.00 32.98 3.85
95 96 7.383156 TTGGTTCCTAGAGACTTTTTAAGGA 57.617 36.000 0.00 0.00 0.00 3.36
96 97 7.501225 TGTTTGGTTCCTAGAGACTTTTTAAGG 59.499 37.037 0.00 0.00 0.00 2.69
97 98 8.446599 TGTTTGGTTCCTAGAGACTTTTTAAG 57.553 34.615 0.00 0.00 0.00 1.85
98 99 8.269317 TCTGTTTGGTTCCTAGAGACTTTTTAA 58.731 33.333 0.00 0.00 0.00 1.52
99 100 7.798071 TCTGTTTGGTTCCTAGAGACTTTTTA 58.202 34.615 0.00 0.00 0.00 1.52
100 101 6.659824 TCTGTTTGGTTCCTAGAGACTTTTT 58.340 36.000 0.00 0.00 0.00 1.94
101 102 6.248569 TCTGTTTGGTTCCTAGAGACTTTT 57.751 37.500 0.00 0.00 0.00 2.27
102 103 5.888982 TCTGTTTGGTTCCTAGAGACTTT 57.111 39.130 0.00 0.00 0.00 2.66
103 104 5.221742 CCTTCTGTTTGGTTCCTAGAGACTT 60.222 44.000 0.00 0.00 0.00 3.01
104 105 4.284746 CCTTCTGTTTGGTTCCTAGAGACT 59.715 45.833 0.00 0.00 0.00 3.24
105 106 4.563786 CCCTTCTGTTTGGTTCCTAGAGAC 60.564 50.000 0.00 0.00 0.00 3.36
106 107 3.583086 CCCTTCTGTTTGGTTCCTAGAGA 59.417 47.826 0.00 0.00 0.00 3.10
107 108 3.583086 TCCCTTCTGTTTGGTTCCTAGAG 59.417 47.826 0.00 0.00 0.00 2.43
108 109 3.326880 GTCCCTTCTGTTTGGTTCCTAGA 59.673 47.826 0.00 0.00 0.00 2.43
109 110 3.328050 AGTCCCTTCTGTTTGGTTCCTAG 59.672 47.826 0.00 0.00 0.00 3.02
110 111 3.323775 AGTCCCTTCTGTTTGGTTCCTA 58.676 45.455 0.00 0.00 0.00 2.94
111 112 2.136026 AGTCCCTTCTGTTTGGTTCCT 58.864 47.619 0.00 0.00 0.00 3.36
112 113 2.658807 AGTCCCTTCTGTTTGGTTCC 57.341 50.000 0.00 0.00 0.00 3.62
113 114 5.127194 AGAAAAAGTCCCTTCTGTTTGGTTC 59.873 40.000 0.00 0.00 30.67 3.62
114 115 5.023452 AGAAAAAGTCCCTTCTGTTTGGTT 58.977 37.500 0.00 0.00 30.67 3.67
115 116 4.610333 AGAAAAAGTCCCTTCTGTTTGGT 58.390 39.130 0.00 0.00 30.67 3.67
116 117 5.592688 TGTAGAAAAAGTCCCTTCTGTTTGG 59.407 40.000 0.00 0.00 33.89 3.28
117 118 6.693315 TGTAGAAAAAGTCCCTTCTGTTTG 57.307 37.500 0.00 0.00 33.89 2.93
118 119 6.265422 CCATGTAGAAAAAGTCCCTTCTGTTT 59.735 38.462 0.00 0.00 33.89 2.83
119 120 5.770162 CCATGTAGAAAAAGTCCCTTCTGTT 59.230 40.000 0.00 0.00 33.89 3.16
120 121 5.073144 TCCATGTAGAAAAAGTCCCTTCTGT 59.927 40.000 0.00 0.00 33.89 3.41
121 122 5.412904 GTCCATGTAGAAAAAGTCCCTTCTG 59.587 44.000 0.00 0.00 33.89 3.02
122 123 5.310857 AGTCCATGTAGAAAAAGTCCCTTCT 59.689 40.000 0.00 0.00 35.99 2.85
123 124 5.561679 AGTCCATGTAGAAAAAGTCCCTTC 58.438 41.667 0.00 0.00 0.00 3.46
124 125 5.584551 AGTCCATGTAGAAAAAGTCCCTT 57.415 39.130 0.00 0.00 0.00 3.95
125 126 6.023603 TCTAGTCCATGTAGAAAAAGTCCCT 58.976 40.000 0.00 0.00 0.00 4.20
126 127 6.295719 TCTAGTCCATGTAGAAAAAGTCCC 57.704 41.667 0.00 0.00 0.00 4.46
127 128 8.617290 TTTTCTAGTCCATGTAGAAAAAGTCC 57.383 34.615 19.59 0.00 46.31 3.85
133 134 8.871125 AGAGTCTTTTTCTAGTCCATGTAGAAA 58.129 33.333 11.15 11.15 42.24 2.52
134 135 8.423906 AGAGTCTTTTTCTAGTCCATGTAGAA 57.576 34.615 1.22 1.22 35.21 2.10
135 136 8.958506 GTAGAGTCTTTTTCTAGTCCATGTAGA 58.041 37.037 0.00 0.00 0.00 2.59
136 137 8.962679 AGTAGAGTCTTTTTCTAGTCCATGTAG 58.037 37.037 0.00 0.00 0.00 2.74
137 138 8.880991 AGTAGAGTCTTTTTCTAGTCCATGTA 57.119 34.615 0.00 0.00 0.00 2.29
138 139 7.784470 AGTAGAGTCTTTTTCTAGTCCATGT 57.216 36.000 0.00 0.00 0.00 3.21
139 140 8.307483 TCAAGTAGAGTCTTTTTCTAGTCCATG 58.693 37.037 0.00 0.00 31.28 3.66
140 141 8.423906 TCAAGTAGAGTCTTTTTCTAGTCCAT 57.576 34.615 0.00 0.00 31.28 3.41
141 142 7.724506 TCTCAAGTAGAGTCTTTTTCTAGTCCA 59.275 37.037 0.00 0.00 44.98 4.02
142 143 8.113173 TCTCAAGTAGAGTCTTTTTCTAGTCC 57.887 38.462 0.00 0.00 44.98 3.85
193 194 9.993454 GGTTTAGAAGTTCTAGGACTTTTTCTA 57.007 33.333 17.72 11.70 39.84 2.10
194 195 8.491958 TGGTTTAGAAGTTCTAGGACTTTTTCT 58.508 33.333 17.72 12.66 39.84 2.52
195 196 8.672823 TGGTTTAGAAGTTCTAGGACTTTTTC 57.327 34.615 17.72 5.59 39.84 2.29
196 197 9.470399 TTTGGTTTAGAAGTTCTAGGACTTTTT 57.530 29.630 17.72 11.57 39.84 1.94
197 198 8.900781 GTTTGGTTTAGAAGTTCTAGGACTTTT 58.099 33.333 17.72 14.42 39.84 2.27
198 199 8.050930 TGTTTGGTTTAGAAGTTCTAGGACTTT 58.949 33.333 17.72 10.12 39.84 2.66
199 200 7.498239 GTGTTTGGTTTAGAAGTTCTAGGACTT 59.502 37.037 16.69 16.69 42.31 3.01
200 201 6.990939 GTGTTTGGTTTAGAAGTTCTAGGACT 59.009 38.462 19.53 0.00 29.56 3.85
201 202 6.204301 GGTGTTTGGTTTAGAAGTTCTAGGAC 59.796 42.308 12.28 13.98 29.56 3.85
202 203 6.293698 GGTGTTTGGTTTAGAAGTTCTAGGA 58.706 40.000 12.28 3.75 29.56 2.94
203 204 5.472478 GGGTGTTTGGTTTAGAAGTTCTAGG 59.528 44.000 12.28 0.00 29.56 3.02
204 205 5.472478 GGGGTGTTTGGTTTAGAAGTTCTAG 59.528 44.000 12.28 0.00 29.56 2.43
205 206 5.379187 GGGGTGTTTGGTTTAGAAGTTCTA 58.621 41.667 8.59 8.59 0.00 2.10
206 207 4.212716 GGGGTGTTTGGTTTAGAAGTTCT 58.787 43.478 10.87 10.87 0.00 3.01
207 208 3.319972 GGGGGTGTTTGGTTTAGAAGTTC 59.680 47.826 0.00 0.00 0.00 3.01
208 209 3.052414 AGGGGGTGTTTGGTTTAGAAGTT 60.052 43.478 0.00 0.00 0.00 2.66
209 210 2.516702 AGGGGGTGTTTGGTTTAGAAGT 59.483 45.455 0.00 0.00 0.00 3.01
210 211 3.238788 AGGGGGTGTTTGGTTTAGAAG 57.761 47.619 0.00 0.00 0.00 2.85
211 212 3.691698 AAGGGGGTGTTTGGTTTAGAA 57.308 42.857 0.00 0.00 0.00 2.10
212 213 3.181430 GGTAAGGGGGTGTTTGGTTTAGA 60.181 47.826 0.00 0.00 0.00 2.10
213 214 3.159472 GGTAAGGGGGTGTTTGGTTTAG 58.841 50.000 0.00 0.00 0.00 1.85
214 215 2.790585 AGGTAAGGGGGTGTTTGGTTTA 59.209 45.455 0.00 0.00 0.00 2.01
215 216 1.576757 AGGTAAGGGGGTGTTTGGTTT 59.423 47.619 0.00 0.00 0.00 3.27
216 217 1.237661 AGGTAAGGGGGTGTTTGGTT 58.762 50.000 0.00 0.00 0.00 3.67
217 218 1.133294 CAAGGTAAGGGGGTGTTTGGT 60.133 52.381 0.00 0.00 0.00 3.67
218 219 1.627864 CAAGGTAAGGGGGTGTTTGG 58.372 55.000 0.00 0.00 0.00 3.28
219 220 0.966179 GCAAGGTAAGGGGGTGTTTG 59.034 55.000 0.00 0.00 0.00 2.93
220 221 0.538746 CGCAAGGTAAGGGGGTGTTT 60.539 55.000 0.00 0.00 0.00 2.83
221 222 1.074248 CGCAAGGTAAGGGGGTGTT 59.926 57.895 0.00 0.00 0.00 3.32
222 223 1.205460 ATCGCAAGGTAAGGGGGTGT 61.205 55.000 0.00 0.00 38.47 4.16
223 224 0.748005 CATCGCAAGGTAAGGGGGTG 60.748 60.000 0.00 0.00 38.47 4.61
224 225 1.607612 CATCGCAAGGTAAGGGGGT 59.392 57.895 0.00 0.00 38.47 4.95
225 226 1.823899 GCATCGCAAGGTAAGGGGG 60.824 63.158 0.00 0.00 38.47 5.40
226 227 2.180204 CGCATCGCAAGGTAAGGGG 61.180 63.158 0.00 0.00 38.47 4.79
227 228 1.449601 ACGCATCGCAAGGTAAGGG 60.450 57.895 0.00 0.00 38.47 3.95
228 229 1.705337 CCACGCATCGCAAGGTAAGG 61.705 60.000 0.00 0.00 38.47 2.69
269 272 1.198759 CGAGGGTTGGAAGGGAAGGA 61.199 60.000 0.00 0.00 0.00 3.36
318 323 0.810031 GAGCGGCGAAAGGATAAGCA 60.810 55.000 12.98 0.00 0.00 3.91
367 376 3.312285 TTTTGCGGGGCCATGCATG 62.312 57.895 20.19 20.19 41.42 4.06
368 377 3.001994 TTTTGCGGGGCCATGCAT 61.002 55.556 21.26 0.00 41.42 3.96
369 378 3.693471 CTTTTGCGGGGCCATGCA 61.693 61.111 17.51 17.51 39.81 3.96
380 399 0.304401 CAAACTTTGGCGCCTTTTGC 59.696 50.000 29.70 0.00 0.00 3.68
413 432 7.308782 GTCCTATGACTTATGAACCAAACAG 57.691 40.000 0.00 0.00 38.53 3.16
440 459 7.757611 TGGGACTTATAAGTTGGGACTAAAAA 58.242 34.615 18.96 0.00 39.88 1.94
441 460 7.332433 TGGGACTTATAAGTTGGGACTAAAA 57.668 36.000 18.96 0.00 39.88 1.52
442 461 6.956102 TGGGACTTATAAGTTGGGACTAAA 57.044 37.500 18.96 0.00 39.88 1.85
443 462 6.502863 ACTTGGGACTTATAAGTTGGGACTAA 59.497 38.462 18.96 10.32 39.88 2.24
444 463 6.027482 ACTTGGGACTTATAAGTTGGGACTA 58.973 40.000 18.96 3.96 39.88 2.59
445 464 4.850386 ACTTGGGACTTATAAGTTGGGACT 59.150 41.667 18.96 0.00 39.88 3.85
446 465 5.175388 ACTTGGGACTTATAAGTTGGGAC 57.825 43.478 18.96 6.19 39.88 4.46
447 466 5.280830 GGAACTTGGGACTTATAAGTTGGGA 60.281 44.000 18.96 6.15 42.75 4.37
448 467 4.948004 GGAACTTGGGACTTATAAGTTGGG 59.052 45.833 18.96 10.37 42.75 4.12
449 468 5.816682 AGGAACTTGGGACTTATAAGTTGG 58.183 41.667 18.96 10.07 42.75 3.77
450 469 8.857694 TTTAGGAACTTGGGACTTATAAGTTG 57.142 34.615 18.96 9.81 42.75 3.16
451 470 9.516546 CTTTTAGGAACTTGGGACTTATAAGTT 57.483 33.333 18.96 3.45 44.67 2.66
452 471 8.107729 CCTTTTAGGAACTTGGGACTTATAAGT 58.892 37.037 18.05 18.05 40.66 2.24
453 472 8.107729 ACCTTTTAGGAACTTGGGACTTATAAG 58.892 37.037 11.05 11.05 41.75 1.73
454 473 7.992295 ACCTTTTAGGAACTTGGGACTTATAA 58.008 34.615 0.00 0.00 41.75 0.98
455 474 7.311486 GGACCTTTTAGGAACTTGGGACTTATA 60.311 40.741 0.00 0.00 41.75 0.98
456 475 6.464530 ACCTTTTAGGAACTTGGGACTTAT 57.535 37.500 0.00 0.00 41.75 1.73
457 476 5.221986 GGACCTTTTAGGAACTTGGGACTTA 60.222 44.000 0.00 0.00 41.75 2.24
458 477 4.447325 GGACCTTTTAGGAACTTGGGACTT 60.447 45.833 0.00 0.00 41.75 3.01
459 478 3.074094 GGACCTTTTAGGAACTTGGGACT 59.926 47.826 0.00 0.00 41.75 3.85
460 479 3.418995 GGACCTTTTAGGAACTTGGGAC 58.581 50.000 0.00 0.00 41.75 4.46
461 480 2.377531 GGGACCTTTTAGGAACTTGGGA 59.622 50.000 0.00 0.00 41.75 4.37
462 481 2.378886 AGGGACCTTTTAGGAACTTGGG 59.621 50.000 0.00 0.00 41.75 4.12
463 482 3.808834 AGGGACCTTTTAGGAACTTGG 57.191 47.619 0.00 0.00 41.75 3.61
464 483 4.586884 GGTAGGGACCTTTTAGGAACTTG 58.413 47.826 0.00 0.00 43.16 3.16
465 484 4.923516 GGTAGGGACCTTTTAGGAACTT 57.076 45.455 0.00 0.00 43.16 2.66
485 504 3.739401 AAGTCCCAGGAACCAAATAGG 57.261 47.619 0.00 0.00 45.67 2.57
486 505 6.719829 ACTTAAAAGTCCCAGGAACCAAATAG 59.280 38.462 0.00 0.00 32.86 1.73
487 506 6.616577 ACTTAAAAGTCCCAGGAACCAAATA 58.383 36.000 0.00 0.00 32.86 1.40
488 507 5.464069 ACTTAAAAGTCCCAGGAACCAAAT 58.536 37.500 0.00 0.00 32.86 2.32
489 508 4.874199 ACTTAAAAGTCCCAGGAACCAAA 58.126 39.130 0.00 0.00 32.86 3.28
490 509 4.529716 ACTTAAAAGTCCCAGGAACCAA 57.470 40.909 0.00 0.00 32.86 3.67
502 521 5.899631 TGGTCTTGTAGGGACTTAAAAGT 57.100 39.130 0.00 0.00 43.16 2.66
504 523 9.895138 GTAATATGGTCTTGTAGGGACTTAAAA 57.105 33.333 0.00 0.00 41.75 1.52
505 524 9.049050 TGTAATATGGTCTTGTAGGGACTTAAA 57.951 33.333 0.00 0.00 41.75 1.52
506 525 8.612486 TGTAATATGGTCTTGTAGGGACTTAA 57.388 34.615 0.00 0.00 41.75 1.85
507 526 8.480501 GTTGTAATATGGTCTTGTAGGGACTTA 58.519 37.037 0.00 0.00 41.75 2.24
508 527 7.182206 AGTTGTAATATGGTCTTGTAGGGACTT 59.818 37.037 0.00 0.00 41.75 3.01
509 528 6.672657 AGTTGTAATATGGTCTTGTAGGGACT 59.327 38.462 0.00 0.00 46.37 3.85
510 529 6.885922 AGTTGTAATATGGTCTTGTAGGGAC 58.114 40.000 0.00 0.00 0.00 4.46
511 530 8.792830 ATAGTTGTAATATGGTCTTGTAGGGA 57.207 34.615 0.00 0.00 0.00 4.20
517 536 9.490379 GGGACTTATAGTTGTAATATGGTCTTG 57.510 37.037 0.00 0.00 0.00 3.02
518 537 9.448587 AGGGACTTATAGTTGTAATATGGTCTT 57.551 33.333 0.00 0.00 27.25 3.01
529 548 9.102453 GAGGGATTTATAGGGACTTATAGTTGT 57.898 37.037 0.00 0.00 41.75 3.32
530 549 8.541234 GGAGGGATTTATAGGGACTTATAGTTG 58.459 40.741 0.00 0.00 41.75 3.16
531 550 8.474268 AGGAGGGATTTATAGGGACTTATAGTT 58.526 37.037 0.00 0.00 41.75 2.24
532 551 8.025299 AGGAGGGATTTATAGGGACTTATAGT 57.975 38.462 0.00 0.00 41.75 2.12
533 552 8.919018 AAGGAGGGATTTATAGGGACTTATAG 57.081 38.462 0.00 0.00 41.75 1.31
535 554 9.340223 CTTAAGGAGGGATTTATAGGGACTTAT 57.660 37.037 0.00 0.00 41.75 1.73
536 555 8.525577 TCTTAAGGAGGGATTTATAGGGACTTA 58.474 37.037 1.85 0.00 41.75 2.24
537 556 7.379139 TCTTAAGGAGGGATTTATAGGGACTT 58.621 38.462 1.85 0.00 41.75 3.01
538 557 6.946526 TCTTAAGGAGGGATTTATAGGGACT 58.053 40.000 1.85 0.00 46.37 3.85
539 558 6.788456 ACTCTTAAGGAGGGATTTATAGGGAC 59.212 42.308 1.85 0.00 45.83 4.46
540 559 6.946526 ACTCTTAAGGAGGGATTTATAGGGA 58.053 40.000 1.85 0.00 45.83 4.20
541 560 7.020009 AGACTCTTAAGGAGGGATTTATAGGG 58.980 42.308 1.85 0.00 45.83 3.53
542 561 8.499288 AAGACTCTTAAGGAGGGATTTATAGG 57.501 38.462 1.85 0.00 45.83 2.57
547 566 8.836735 TGAAATAAGACTCTTAAGGAGGGATTT 58.163 33.333 1.85 2.87 45.83 2.17
548 567 8.393959 TGAAATAAGACTCTTAAGGAGGGATT 57.606 34.615 1.85 0.00 45.83 3.01
549 568 7.996758 TGAAATAAGACTCTTAAGGAGGGAT 57.003 36.000 1.85 0.00 45.83 3.85
550 569 7.996758 ATGAAATAAGACTCTTAAGGAGGGA 57.003 36.000 1.85 0.00 45.83 4.20
566 585 9.762381 AGTGGGTATTTGGAACTTATGAAATAA 57.238 29.630 0.00 0.00 36.20 1.40
567 586 9.762381 AAGTGGGTATTTGGAACTTATGAAATA 57.238 29.630 0.00 0.00 29.56 1.40
568 587 8.664669 AAGTGGGTATTTGGAACTTATGAAAT 57.335 30.769 0.00 0.00 29.56 2.17
569 588 8.485578 AAAGTGGGTATTTGGAACTTATGAAA 57.514 30.769 0.00 0.00 31.09 2.69
570 589 9.589461 TTAAAGTGGGTATTTGGAACTTATGAA 57.411 29.630 0.00 0.00 31.09 2.57
571 590 9.238368 CTTAAAGTGGGTATTTGGAACTTATGA 57.762 33.333 0.00 0.00 31.09 2.15
572 591 9.020731 ACTTAAAGTGGGTATTTGGAACTTATG 57.979 33.333 0.00 0.00 31.09 1.90
573 592 9.239551 GACTTAAAGTGGGTATTTGGAACTTAT 57.760 33.333 0.00 0.00 31.09 1.73
574 593 7.666804 GGACTTAAAGTGGGTATTTGGAACTTA 59.333 37.037 0.00 0.00 31.09 2.24
575 594 6.492429 GGACTTAAAGTGGGTATTTGGAACTT 59.508 38.462 0.00 0.00 32.60 2.66
576 595 6.008331 GGACTTAAAGTGGGTATTTGGAACT 58.992 40.000 0.00 0.00 0.00 3.01
577 596 6.008331 AGGACTTAAAGTGGGTATTTGGAAC 58.992 40.000 0.00 0.00 0.00 3.62
578 597 6.208840 AGGACTTAAAGTGGGTATTTGGAA 57.791 37.500 0.00 0.00 0.00 3.53
579 598 5.853572 AGGACTTAAAGTGGGTATTTGGA 57.146 39.130 0.00 0.00 0.00 3.53
580 599 9.689501 TTATAAGGACTTAAAGTGGGTATTTGG 57.310 33.333 0.00 0.00 0.00 3.28
584 603 8.712103 GGACTTATAAGGACTTAAAGTGGGTAT 58.288 37.037 16.73 0.00 32.26 2.73
585 604 7.126268 GGGACTTATAAGGACTTAAAGTGGGTA 59.874 40.741 16.73 0.00 32.26 3.69
586 605 6.069789 GGGACTTATAAGGACTTAAAGTGGGT 60.070 42.308 16.73 0.00 32.26 4.51
587 606 6.158169 AGGGACTTATAAGGACTTAAAGTGGG 59.842 42.308 16.73 0.00 27.25 4.61
588 607 7.196637 AGGGACTTATAAGGACTTAAAGTGG 57.803 40.000 16.73 0.00 27.25 4.00
607 626 5.510690 CCCATCTAAACCAAACAAAAGGGAC 60.511 44.000 0.00 0.00 33.23 4.46
608 627 4.591072 CCCATCTAAACCAAACAAAAGGGA 59.409 41.667 0.00 0.00 33.23 4.20
609 628 4.591072 TCCCATCTAAACCAAACAAAAGGG 59.409 41.667 0.00 0.00 0.00 3.95
610 629 5.304357 AGTCCCATCTAAACCAAACAAAAGG 59.696 40.000 0.00 0.00 0.00 3.11
611 630 6.405278 AGTCCCATCTAAACCAAACAAAAG 57.595 37.500 0.00 0.00 0.00 2.27
612 631 6.800072 AAGTCCCATCTAAACCAAACAAAA 57.200 33.333 0.00 0.00 0.00 2.44
613 632 9.238368 CTATAAGTCCCATCTAAACCAAACAAA 57.762 33.333 0.00 0.00 0.00 2.83
614 633 7.832187 CCTATAAGTCCCATCTAAACCAAACAA 59.168 37.037 0.00 0.00 0.00 2.83
615 634 7.343357 CCTATAAGTCCCATCTAAACCAAACA 58.657 38.462 0.00 0.00 0.00 2.83
616 635 6.771267 CCCTATAAGTCCCATCTAAACCAAAC 59.229 42.308 0.00 0.00 0.00 2.93
617 636 6.679303 TCCCTATAAGTCCCATCTAAACCAAA 59.321 38.462 0.00 0.00 0.00 3.28
618 637 6.100714 GTCCCTATAAGTCCCATCTAAACCAA 59.899 42.308 0.00 0.00 0.00 3.67
619 638 5.605488 GTCCCTATAAGTCCCATCTAAACCA 59.395 44.000 0.00 0.00 0.00 3.67
620 639 5.845065 AGTCCCTATAAGTCCCATCTAAACC 59.155 44.000 0.00 0.00 0.00 3.27
621 640 6.997942 AGTCCCTATAAGTCCCATCTAAAC 57.002 41.667 0.00 0.00 0.00 2.01
622 641 8.401955 AAAAGTCCCTATAAGTCCCATCTAAA 57.598 34.615 0.00 0.00 0.00 1.85
623 642 8.401955 AAAAAGTCCCTATAAGTCCCATCTAA 57.598 34.615 0.00 0.00 0.00 2.10
625 644 6.910259 AAAAAGTCCCTATAAGTCCCATCT 57.090 37.500 0.00 0.00 0.00 2.90
645 664 8.755028 GGATTTATTGGCTTAGGGACTTAAAAA 58.245 33.333 0.00 0.00 41.75 1.94
646 665 8.119891 AGGATTTATTGGCTTAGGGACTTAAAA 58.880 33.333 0.00 0.00 41.75 1.52
647 666 7.648770 AGGATTTATTGGCTTAGGGACTTAAA 58.351 34.615 0.00 0.00 41.75 1.52
648 667 7.220890 AGGATTTATTGGCTTAGGGACTTAA 57.779 36.000 0.00 0.00 41.75 1.85
649 668 6.841781 AGGATTTATTGGCTTAGGGACTTA 57.158 37.500 0.00 0.00 41.75 2.24
650 669 5.734031 AGGATTTATTGGCTTAGGGACTT 57.266 39.130 0.00 0.00 41.75 3.01
651 670 5.449553 CAAGGATTTATTGGCTTAGGGACT 58.550 41.667 0.00 0.00 46.37 3.85
652 671 4.584743 CCAAGGATTTATTGGCTTAGGGAC 59.415 45.833 0.00 0.00 40.74 4.46
653 672 4.480537 TCCAAGGATTTATTGGCTTAGGGA 59.519 41.667 0.00 0.00 45.69 4.20
654 673 4.803452 TCCAAGGATTTATTGGCTTAGGG 58.197 43.478 0.00 0.00 45.69 3.53
655 674 6.154363 TGTTTCCAAGGATTTATTGGCTTAGG 59.846 38.462 0.00 0.00 45.69 2.69
656 675 7.169158 TGTTTCCAAGGATTTATTGGCTTAG 57.831 36.000 0.00 0.00 45.69 2.18
657 676 7.546250 TTGTTTCCAAGGATTTATTGGCTTA 57.454 32.000 0.00 0.00 45.69 3.09
658 677 6.432403 TTGTTTCCAAGGATTTATTGGCTT 57.568 33.333 0.00 0.00 45.69 4.35
659 678 6.183361 TGTTTGTTTCCAAGGATTTATTGGCT 60.183 34.615 0.00 0.00 45.69 4.75
660 679 5.994668 TGTTTGTTTCCAAGGATTTATTGGC 59.005 36.000 0.00 0.00 45.69 4.52
662 681 6.426633 GGGTGTTTGTTTCCAAGGATTTATTG 59.573 38.462 0.00 0.00 0.00 1.90
663 682 6.328934 AGGGTGTTTGTTTCCAAGGATTTATT 59.671 34.615 0.00 0.00 0.00 1.40
664 683 5.843969 AGGGTGTTTGTTTCCAAGGATTTAT 59.156 36.000 0.00 0.00 0.00 1.40
665 684 5.212745 AGGGTGTTTGTTTCCAAGGATTTA 58.787 37.500 0.00 0.00 0.00 1.40
666 685 4.037222 AGGGTGTTTGTTTCCAAGGATTT 58.963 39.130 0.00 0.00 0.00 2.17
667 686 3.641436 GAGGGTGTTTGTTTCCAAGGATT 59.359 43.478 0.00 0.00 0.00 3.01
668 687 3.230976 GAGGGTGTTTGTTTCCAAGGAT 58.769 45.455 0.00 0.00 0.00 3.24
669 688 2.024846 TGAGGGTGTTTGTTTCCAAGGA 60.025 45.455 0.00 0.00 0.00 3.36
670 689 2.362077 CTGAGGGTGTTTGTTTCCAAGG 59.638 50.000 0.00 0.00 0.00 3.61
671 690 3.287222 TCTGAGGGTGTTTGTTTCCAAG 58.713 45.455 0.00 0.00 0.00 3.61
672 691 3.287222 CTCTGAGGGTGTTTGTTTCCAA 58.713 45.455 0.00 0.00 0.00 3.53
673 692 2.241176 ACTCTGAGGGTGTTTGTTTCCA 59.759 45.455 9.85 0.00 0.00 3.53
674 693 2.932261 ACTCTGAGGGTGTTTGTTTCC 58.068 47.619 9.85 0.00 0.00 3.13
675 694 3.694566 ACAACTCTGAGGGTGTTTGTTTC 59.305 43.478 9.85 0.00 30.40 2.78
676 695 3.697166 ACAACTCTGAGGGTGTTTGTTT 58.303 40.909 9.85 0.00 30.40 2.83
677 696 3.366052 ACAACTCTGAGGGTGTTTGTT 57.634 42.857 9.85 0.00 30.40 2.83
678 697 4.141482 ACATACAACTCTGAGGGTGTTTGT 60.141 41.667 22.14 22.14 30.40 2.83
679 698 4.389374 ACATACAACTCTGAGGGTGTTTG 58.611 43.478 21.30 21.30 30.40 2.93
680 699 4.706842 ACATACAACTCTGAGGGTGTTT 57.293 40.909 17.76 10.02 30.40 2.83
681 700 5.104900 GGATACATACAACTCTGAGGGTGTT 60.105 44.000 17.76 6.62 32.66 3.32
682 701 4.406003 GGATACATACAACTCTGAGGGTGT 59.594 45.833 17.01 17.01 0.00 4.16
683 702 4.651503 AGGATACATACAACTCTGAGGGTG 59.348 45.833 9.85 9.10 41.41 4.61
684 703 4.884961 AGGATACATACAACTCTGAGGGT 58.115 43.478 9.85 9.28 41.41 4.34
685 704 5.878406 AAGGATACATACAACTCTGAGGG 57.122 43.478 9.85 3.42 41.41 4.30
686 705 6.051717 CCAAAGGATACATACAACTCTGAGG 58.948 44.000 9.85 0.00 41.41 3.86
687 706 6.644347 ACCAAAGGATACATACAACTCTGAG 58.356 40.000 2.45 2.45 41.41 3.35
688 707 6.351881 GGACCAAAGGATACATACAACTCTGA 60.352 42.308 0.00 0.00 41.41 3.27
689 708 5.817816 GGACCAAAGGATACATACAACTCTG 59.182 44.000 0.00 0.00 41.41 3.35
709 728 4.735599 AGGACCCCGGGAAGGACC 62.736 72.222 26.32 15.57 45.00 4.46
710 729 3.082055 GAGGACCCCGGGAAGGAC 61.082 72.222 26.32 5.48 45.00 3.85
711 730 4.410033 GGAGGACCCCGGGAAGGA 62.410 72.222 26.32 0.00 45.00 3.36
712 731 4.733725 TGGAGGACCCCGGGAAGG 62.734 72.222 26.32 8.13 40.63 3.46
713 732 3.400054 GTGGAGGACCCCGGGAAG 61.400 72.222 26.32 9.05 34.81 3.46
714 733 3.936566 AGTGGAGGACCCCGGGAA 61.937 66.667 26.32 0.00 34.81 3.97
715 734 4.715130 CAGTGGAGGACCCCGGGA 62.715 72.222 26.32 0.00 34.81 5.14
718 737 3.706373 CCACAGTGGAGGACCCCG 61.706 72.222 15.35 0.00 40.96 5.73
740 792 1.217001 CTTAGCACGCAACAGACACA 58.783 50.000 0.00 0.00 0.00 3.72
786 839 4.766404 AAAGGAGACGCCATTTTTACAG 57.234 40.909 0.00 0.00 40.02 2.74
877 1015 3.407424 TCTACATCTTGCTGCACTGTT 57.593 42.857 14.43 0.00 0.00 3.16
904 1042 2.554032 CCTCGGGGACAAATGCATTATC 59.446 50.000 13.39 13.14 33.58 1.75
1515 2218 8.970691 TGCAGCAAGAAGAAGAAAATATAAAC 57.029 30.769 0.00 0.00 0.00 2.01
1532 2244 1.030488 CCCACCAGATCTGCAGCAAG 61.030 60.000 17.76 5.06 0.00 4.01
1560 2272 6.716934 ACCTTGTCGATGTATTCTACAGAT 57.283 37.500 0.00 0.00 42.77 2.90
1677 2518 2.552315 ACTTAGTCATGCCGGTTTGTTG 59.448 45.455 1.90 0.00 0.00 3.33
1678 2519 2.858745 ACTTAGTCATGCCGGTTTGTT 58.141 42.857 1.90 0.00 0.00 2.83
1679 2520 2.561478 ACTTAGTCATGCCGGTTTGT 57.439 45.000 1.90 0.00 0.00 2.83
1680 2521 2.347452 CGTACTTAGTCATGCCGGTTTG 59.653 50.000 1.90 0.64 0.00 2.93
1760 2711 6.212388 ACTCTCACAAGTCTATCAACAGGAAT 59.788 38.462 0.00 0.00 0.00 3.01
1785 2736 3.325870 CATACCGAAACTGAGTCAGCAA 58.674 45.455 20.31 0.00 34.37 3.91
1904 2984 4.904241 ACATGTTCTCTTAAGCAGCTTCT 58.096 39.130 12.07 0.00 0.00 2.85
1905 2985 6.370166 AGTTACATGTTCTCTTAAGCAGCTTC 59.630 38.462 12.07 0.00 0.00 3.86
1935 3034 2.856222 AGCCTGAAAGTGTTCTTCAGG 58.144 47.619 21.90 21.90 43.49 3.86
1944 3043 5.129485 TCCTAAGAATCCTAGCCTGAAAGTG 59.871 44.000 0.00 0.00 0.00 3.16
2000 3106 1.004560 GGCAGCAGCACAGAGTACA 60.005 57.895 2.65 0.00 44.61 2.90
2106 3217 8.738645 ATAAATAGAAGAAGTGTGAATCCACC 57.261 34.615 0.00 0.00 42.53 4.61
2133 3250 1.953686 TCAGGGCTGTTAAACTTGTGC 59.046 47.619 0.00 0.00 0.00 4.57
2295 3429 7.065324 AGGCGACATATAAAATCTCGACAAAAA 59.935 33.333 0.00 0.00 34.70 1.94
2296 3430 6.537301 AGGCGACATATAAAATCTCGACAAAA 59.463 34.615 0.00 0.00 34.70 2.44
2297 3431 6.046593 AGGCGACATATAAAATCTCGACAAA 58.953 36.000 0.00 0.00 34.70 2.83
2298 3432 5.597806 AGGCGACATATAAAATCTCGACAA 58.402 37.500 0.00 0.00 34.70 3.18
2299 3433 5.196341 AGGCGACATATAAAATCTCGACA 57.804 39.130 0.00 0.00 34.70 4.35
2300 3434 6.526566 AAAGGCGACATATAAAATCTCGAC 57.473 37.500 0.00 0.00 32.28 4.20
2301 3435 8.651391 TTAAAAGGCGACATATAAAATCTCGA 57.349 30.769 0.00 0.00 0.00 4.04
2302 3436 9.370126 CTTTAAAAGGCGACATATAAAATCTCG 57.630 33.333 0.00 0.00 0.00 4.04
2312 3446 9.778741 AGAATATGATCTTTAAAAGGCGACATA 57.221 29.630 0.00 0.00 0.00 2.29
2313 3447 8.682936 AGAATATGATCTTTAAAAGGCGACAT 57.317 30.769 0.00 0.00 0.00 3.06
2314 3448 8.506168 AAGAATATGATCTTTAAAAGGCGACA 57.494 30.769 0.00 0.00 36.23 4.35
2406 3540 2.485479 GCTGTTCCAGGAGTTGACAGAA 60.485 50.000 19.48 0.00 39.97 3.02
2495 3629 8.591940 TGAGCTTGATAATACTAATGAGCAGAT 58.408 33.333 0.00 0.00 0.00 2.90
2496 3640 7.955918 TGAGCTTGATAATACTAATGAGCAGA 58.044 34.615 0.00 0.00 0.00 4.26
2502 3646 6.649973 AGCAGCTGAGCTTGATAATACTAATG 59.350 38.462 20.43 0.00 43.70 1.90
2504 3648 6.166984 AGCAGCTGAGCTTGATAATACTAA 57.833 37.500 20.43 0.00 43.70 2.24
2512 3656 0.614294 ACTGAGCAGCTGAGCTTGAT 59.386 50.000 20.43 0.00 46.75 2.57
2573 3735 6.424207 ACCGAGTTTCTTTTTGATACAGTCTC 59.576 38.462 0.00 0.00 0.00 3.36
2610 3774 6.372381 GCATGAAGCATATACATCATACACCA 59.628 38.462 0.00 0.00 44.79 4.17
2816 4067 4.940046 CAGAGCAACAAATCAGTGATACCT 59.060 41.667 5.94 0.00 0.00 3.08
2876 4127 3.664107 TGTCAAGTGCTCGAATTTAGCT 58.336 40.909 13.10 0.00 40.73 3.32
2901 4152 4.380531 CCATATGAATTCGTGGTACTGCT 58.619 43.478 10.54 0.00 0.00 4.24
2946 4197 4.202367 GGATACTGAACTTCATAGGTGGGG 60.202 50.000 0.00 0.00 0.00 4.96
2961 4219 3.411446 CCACAAACAAGCTGGATACTGA 58.589 45.455 0.00 0.00 37.83 3.41
3022 4282 1.462283 CATCAGTCCGAACAGCAACAG 59.538 52.381 0.00 0.00 0.00 3.16
3036 4296 4.003648 GAGGAAATTCGGTTCACATCAGT 58.996 43.478 0.00 0.00 0.00 3.41
3038 4298 3.009033 AGGAGGAAATTCGGTTCACATCA 59.991 43.478 0.00 0.00 0.00 3.07
3043 4303 2.159382 GCAAGGAGGAAATTCGGTTCA 58.841 47.619 0.00 0.00 0.00 3.18
3058 4318 1.139163 GTTGGCATTTTGACGCAAGG 58.861 50.000 0.00 0.00 46.39 3.61
3059 4319 4.550639 GAAAAGTTGGCATTTTGACGCAAG 60.551 41.667 3.68 0.00 34.87 4.01
3060 4320 2.593346 AAGTTGGCATTTTGACGCAA 57.407 40.000 0.00 0.00 0.00 4.85
3063 4323 3.862267 TGTGAAAAGTTGGCATTTTGACG 59.138 39.130 10.03 0.00 36.80 4.35
3101 4371 0.743345 GCCGGCCAGTAACTTGTAGG 60.743 60.000 18.11 0.00 0.00 3.18
3105 4375 2.750237 GGGCCGGCCAGTAACTTG 60.750 66.667 44.46 0.00 37.98 3.16
3118 4391 1.876156 CTCGCAGAATCTAAATGGGCC 59.124 52.381 0.00 0.00 34.09 5.80
3210 4483 1.404851 GCTCCGAGACTTTCTGGAAGG 60.405 57.143 0.00 0.00 39.79 3.46
3211 4484 1.404851 GGCTCCGAGACTTTCTGGAAG 60.405 57.143 0.00 0.00 41.32 3.46
3212 4485 0.608640 GGCTCCGAGACTTTCTGGAA 59.391 55.000 0.00 0.00 31.32 3.53
3213 4486 1.595993 CGGCTCCGAGACTTTCTGGA 61.596 60.000 1.35 0.00 42.83 3.86
3214 4487 1.153745 CGGCTCCGAGACTTTCTGG 60.154 63.158 1.35 0.00 42.83 3.86
3215 4488 1.153745 CCGGCTCCGAGACTTTCTG 60.154 63.158 10.28 0.00 42.83 3.02
3216 4489 3.007973 GCCGGCTCCGAGACTTTCT 62.008 63.158 22.15 0.00 42.83 2.52
3217 4490 2.508586 AAGCCGGCTCCGAGACTTTC 62.509 60.000 32.93 0.00 42.83 2.62
3218 4491 2.113243 AAAGCCGGCTCCGAGACTTT 62.113 55.000 32.93 15.26 42.83 2.66
3219 4492 2.508586 GAAAGCCGGCTCCGAGACTT 62.509 60.000 32.93 19.01 42.83 3.01
3224 4497 0.536460 AAAAAGAAAGCCGGCTCCGA 60.536 50.000 32.93 0.00 42.83 4.55
3326 4603 8.946085 TCGAGCAGAATTGTTTTTCAATAGTAT 58.054 29.630 0.00 0.00 44.85 2.12
3327 4604 8.227791 GTCGAGCAGAATTGTTTTTCAATAGTA 58.772 33.333 0.00 0.00 44.85 1.82
3334 4611 4.489679 AGGTCGAGCAGAATTGTTTTTC 57.510 40.909 18.15 0.00 0.00 2.29
3340 4617 3.904136 ACAAAAGGTCGAGCAGAATTG 57.096 42.857 18.15 16.42 0.00 2.32
3343 4620 2.912771 TGAACAAAAGGTCGAGCAGAA 58.087 42.857 18.15 0.00 0.00 3.02
3345 4622 6.851222 ATATATGAACAAAAGGTCGAGCAG 57.149 37.500 18.15 6.14 0.00 4.24
3375 4652 8.910666 CAAATTTTTGTTTGAAAAAGTGAACCC 58.089 29.630 0.00 0.00 40.64 4.11
3376 4653 9.670719 TCAAATTTTTGTTTGAAAAAGTGAACC 57.329 25.926 3.18 0.00 43.12 3.62
3529 4808 6.993902 ACACAAAATTCAGAAAATGGAAGCAT 59.006 30.769 0.00 0.00 0.00 3.79
3531 4810 6.849588 ACACAAAATTCAGAAAATGGAAGC 57.150 33.333 0.00 0.00 0.00 3.86
3562 4841 8.878769 ACTTTTTGAAAATGCGAACATACTTTT 58.121 25.926 3.76 0.00 34.62 2.27
3567 4846 7.704472 AGAACACTTTTTGAAAATGCGAACATA 59.296 29.630 3.76 0.00 34.62 2.29
3573 4852 5.947503 TCAGAACACTTTTTGAAAATGCG 57.052 34.783 3.76 0.00 0.00 4.73
3625 4904 1.133199 ACAGGAGGCCATGAAACCAAA 60.133 47.619 5.01 0.00 0.00 3.28
3627 4906 1.281867 CTACAGGAGGCCATGAAACCA 59.718 52.381 5.01 0.00 0.00 3.67
3628 4907 1.408822 CCTACAGGAGGCCATGAAACC 60.409 57.143 5.01 0.00 38.96 3.27
3629 4908 1.408822 CCCTACAGGAGGCCATGAAAC 60.409 57.143 5.01 0.00 45.17 2.78
3630 4909 0.918983 CCCTACAGGAGGCCATGAAA 59.081 55.000 5.01 0.00 45.17 2.69
3633 4912 4.399764 TCCCTACAGGAGGCCATG 57.600 61.111 5.01 2.81 45.17 3.66
3641 4920 2.287668 CGAATACGAGCTTCCCTACAGG 60.288 54.545 0.00 0.00 42.66 4.00
3642 4921 2.287668 CCGAATACGAGCTTCCCTACAG 60.288 54.545 0.00 0.00 42.66 2.74
3648 4927 1.152383 GGTGCCGAATACGAGCTTCC 61.152 60.000 0.00 0.00 42.66 3.46
3650 4929 0.249398 AAGGTGCCGAATACGAGCTT 59.751 50.000 0.00 0.00 42.66 3.74
3655 4934 2.606272 GGAGTTTAAGGTGCCGAATACG 59.394 50.000 0.00 0.00 39.43 3.06
3656 4935 3.602483 TGGAGTTTAAGGTGCCGAATAC 58.398 45.455 0.00 0.00 0.00 1.89
3670 4949 6.071051 TGCTTTTTGTCTAAGGTTTGGAGTTT 60.071 34.615 0.00 0.00 0.00 2.66
3671 4950 5.420739 TGCTTTTTGTCTAAGGTTTGGAGTT 59.579 36.000 0.00 0.00 0.00 3.01
3672 4951 4.953579 TGCTTTTTGTCTAAGGTTTGGAGT 59.046 37.500 0.00 0.00 0.00 3.85
3673 4952 5.067805 AGTGCTTTTTGTCTAAGGTTTGGAG 59.932 40.000 0.00 0.00 0.00 3.86
3674 4953 4.953579 AGTGCTTTTTGTCTAAGGTTTGGA 59.046 37.500 0.00 0.00 0.00 3.53
3675 4954 5.262588 AGTGCTTTTTGTCTAAGGTTTGG 57.737 39.130 0.00 0.00 0.00 3.28
3676 4955 6.438763 CCTAGTGCTTTTTGTCTAAGGTTTG 58.561 40.000 0.00 0.00 0.00 2.93
3677 4956 5.535030 CCCTAGTGCTTTTTGTCTAAGGTTT 59.465 40.000 0.00 0.00 0.00 3.27
3678 4957 5.070685 CCCTAGTGCTTTTTGTCTAAGGTT 58.929 41.667 0.00 0.00 0.00 3.50
3679 4958 4.652822 CCCTAGTGCTTTTTGTCTAAGGT 58.347 43.478 0.00 0.00 0.00 3.50
3680 4959 3.440522 GCCCTAGTGCTTTTTGTCTAAGG 59.559 47.826 0.00 0.00 0.00 2.69
3681 4960 3.125316 CGCCCTAGTGCTTTTTGTCTAAG 59.875 47.826 0.00 0.00 0.00 2.18
3682 4961 3.071479 CGCCCTAGTGCTTTTTGTCTAA 58.929 45.455 0.00 0.00 0.00 2.10
3683 4962 2.300723 TCGCCCTAGTGCTTTTTGTCTA 59.699 45.455 0.00 0.00 0.00 2.59
3684 4963 1.071699 TCGCCCTAGTGCTTTTTGTCT 59.928 47.619 0.00 0.00 0.00 3.41
3690 4969 0.685097 TGAGTTCGCCCTAGTGCTTT 59.315 50.000 0.00 0.00 0.00 3.51
3702 4981 7.406553 TCAAAATAGACAACAAAGTGAGTTCG 58.593 34.615 0.00 0.00 0.00 3.95
3746 5025 7.282224 ACAAGTTATGTTGTGCTACAAGAAAGA 59.718 33.333 2.52 0.00 40.06 2.52
3748 5027 7.328277 ACAAGTTATGTTGTGCTACAAGAAA 57.672 32.000 2.52 0.00 40.06 2.52
3754 5033 6.780706 ACTGTACAAGTTATGTTGTGCTAC 57.219 37.500 0.00 0.00 41.91 3.58
3766 5045 7.618512 AGACAGGGTATATGTACTGTACAAGTT 59.381 37.037 23.03 10.69 43.61 2.66
3768 5047 7.584122 AGACAGGGTATATGTACTGTACAAG 57.416 40.000 23.03 9.21 43.61 3.16
3769 5048 9.650714 AATAGACAGGGTATATGTACTGTACAA 57.349 33.333 23.03 13.33 43.61 2.41
3773 5052 8.750298 GCATAATAGACAGGGTATATGTACTGT 58.250 37.037 7.46 7.46 45.99 3.55
3774 5053 8.749354 TGCATAATAGACAGGGTATATGTACTG 58.251 37.037 0.00 0.00 37.01 2.74
3775 5054 8.895141 TGCATAATAGACAGGGTATATGTACT 57.105 34.615 0.00 0.00 0.00 2.73
3904 5189 6.847400 TCGTGAACTTTTCTCAAATTCACAA 58.153 32.000 13.91 0.00 46.09 3.33


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.