Multiple sequence alignment - TraesCS2B01G434700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G434700 chr2B 100.000 2198 0 0 1 2198 624540443 624542640 0.000000e+00 4060.0
1 TraesCS2B01G434700 chr2D 89.272 1333 66 32 499 1785 527393031 527394332 0.000000e+00 1598.0
2 TraesCS2B01G434700 chr2D 86.880 343 29 8 1866 2198 527394340 527394676 9.590000e-99 370.0
3 TraesCS2B01G434700 chr2D 87.558 217 9 4 1 201 527392657 527392871 3.650000e-58 235.0
4 TraesCS2B01G434700 chr2A 84.975 985 66 40 716 1637 672348492 672349457 0.000000e+00 924.0
5 TraesCS2B01G434700 chr2A 87.879 132 13 1 1663 1791 672349457 672349588 3.780000e-33 152.0
6 TraesCS2B01G434700 chr2A 92.308 91 7 0 6 96 672347898 672347988 1.770000e-26 130.0
7 TraesCS2B01G434700 chr4B 89.954 219 13 2 992 1201 576745592 576745810 7.730000e-70 274.0
8 TraesCS2B01G434700 chr4D 89.401 217 14 2 994 1201 461465772 461465988 4.650000e-67 265.0
9 TraesCS2B01G434700 chr4A 89.302 215 14 4 994 1199 7177029 7176815 6.020000e-66 261.0
10 TraesCS2B01G434700 chr4A 81.407 199 21 9 648 841 7177256 7177069 4.890000e-32 148.0
11 TraesCS2B01G434700 chr4A 80.357 112 19 1 2005 2113 118634622 118634511 5.030000e-12 82.4
12 TraesCS2B01G434700 chr1B 93.878 49 2 1 1820 1867 218012126 218012078 3.030000e-09 73.1
13 TraesCS2B01G434700 chr3A 85.507 69 9 1 1989 2056 453822972 453823040 1.090000e-08 71.3
14 TraesCS2B01G434700 chr3A 100.000 36 0 0 1820 1855 301332690 301332655 1.410000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G434700 chr2B 624540443 624542640 2197 False 4060.000000 4060 100.000000 1 2198 1 chr2B.!!$F1 2197
1 TraesCS2B01G434700 chr2D 527392657 527394676 2019 False 734.333333 1598 87.903333 1 2198 3 chr2D.!!$F1 2197
2 TraesCS2B01G434700 chr2A 672347898 672349588 1690 False 402.000000 924 88.387333 6 1791 3 chr2A.!!$F1 1785

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
914 1038 0.478589 AAGGGAAAGGGAGGGAAGCT 60.479 55.0 0.0 0.0 0.0 3.74 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1861 2045 0.036388 ACCAACCACAGCGACATAGG 60.036 55.0 0.0 0.0 0.0 2.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
49 50 1.065551 GTTGTTGATGGCTTATCCGGC 59.934 52.381 0.00 0.00 37.80 6.13
91 92 1.468520 CGGGACACATGGATCAAACAC 59.531 52.381 0.00 0.00 0.00 3.32
100 101 2.080693 TGGATCAAACACGGCACATAC 58.919 47.619 0.00 0.00 0.00 2.39
108 109 2.226330 ACACGGCACATACACACAAAT 58.774 42.857 0.00 0.00 0.00 2.32
109 110 2.225491 ACACGGCACATACACACAAATC 59.775 45.455 0.00 0.00 0.00 2.17
110 111 2.225255 CACGGCACATACACACAAATCA 59.775 45.455 0.00 0.00 0.00 2.57
111 112 2.225491 ACGGCACATACACACAAATCAC 59.775 45.455 0.00 0.00 0.00 3.06
112 113 2.414029 CGGCACATACACACAAATCACC 60.414 50.000 0.00 0.00 0.00 4.02
206 279 2.739913 CGGTTACACGTCATGGTTCATT 59.260 45.455 0.00 0.00 0.00 2.57
225 298 2.957402 TGAGGCATCAAGTGGACTTT 57.043 45.000 0.00 0.00 33.11 2.66
282 355 7.361713 CGTTTGTGAAAATAGCTATTCCCAAGA 60.362 37.037 19.11 9.11 0.00 3.02
296 369 7.704047 GCTATTCCCAAGATGATCAAGTTTTTC 59.296 37.037 0.00 0.00 0.00 2.29
300 373 8.021898 TCCCAAGATGATCAAGTTTTTCTTTT 57.978 30.769 0.00 0.00 33.63 2.27
339 412 9.574516 AAAAGTGTTATTACTCAGGAATCAAGT 57.425 29.630 0.00 0.00 0.00 3.16
340 413 9.574516 AAAGTGTTATTACTCAGGAATCAAGTT 57.425 29.630 0.00 0.00 0.00 2.66
350 423 8.894768 ACTCAGGAATCAAGTTATATACAAGC 57.105 34.615 0.00 0.00 0.00 4.01
351 424 8.709308 ACTCAGGAATCAAGTTATATACAAGCT 58.291 33.333 0.00 0.00 0.00 3.74
352 425 9.202273 CTCAGGAATCAAGTTATATACAAGCTC 57.798 37.037 0.00 0.00 0.00 4.09
353 426 8.150945 TCAGGAATCAAGTTATATACAAGCTCC 58.849 37.037 0.00 0.00 0.00 4.70
354 427 7.933577 CAGGAATCAAGTTATATACAAGCTCCA 59.066 37.037 0.00 0.00 0.00 3.86
355 428 8.494433 AGGAATCAAGTTATATACAAGCTCCAA 58.506 33.333 0.00 0.00 0.00 3.53
356 429 9.120538 GGAATCAAGTTATATACAAGCTCCAAA 57.879 33.333 0.00 0.00 0.00 3.28
360 433 9.461312 TCAAGTTATATACAAGCTCCAAATTGT 57.539 29.630 0.00 0.00 42.15 2.71
361 434 9.507280 CAAGTTATATACAAGCTCCAAATTGTG 57.493 33.333 1.02 0.00 39.83 3.33
362 435 8.807948 AGTTATATACAAGCTCCAAATTGTGT 57.192 30.769 1.02 0.00 39.83 3.72
363 436 9.899661 AGTTATATACAAGCTCCAAATTGTGTA 57.100 29.630 1.02 0.00 39.83 2.90
390 463 9.985730 ACAATTCTTTGTTGGCATTATATATGG 57.014 29.630 0.00 0.00 43.57 2.74
395 468 8.359642 TCTTTGTTGGCATTATATATGGAAAGC 58.640 33.333 0.00 0.00 0.00 3.51
396 469 6.588719 TGTTGGCATTATATATGGAAAGCC 57.411 37.500 7.31 7.31 41.15 4.35
417 490 3.623960 CCAATGGCCGACTACGAAATAAA 59.376 43.478 0.00 0.00 42.66 1.40
423 496 4.171754 GCCGACTACGAAATAAACACTCT 58.828 43.478 0.00 0.00 42.66 3.24
425 498 4.561606 CCGACTACGAAATAAACACTCTGG 59.438 45.833 0.00 0.00 42.66 3.86
426 499 5.396484 CGACTACGAAATAAACACTCTGGA 58.604 41.667 0.00 0.00 42.66 3.86
427 500 5.860182 CGACTACGAAATAAACACTCTGGAA 59.140 40.000 0.00 0.00 42.66 3.53
430 503 8.617290 ACTACGAAATAAACACTCTGGAAAAT 57.383 30.769 0.00 0.00 0.00 1.82
435 508 9.893305 CGAAATAAACACTCTGGAAAATAACTT 57.107 29.630 0.00 0.00 0.00 2.66
437 510 9.893305 AAATAAACACTCTGGAAAATAACTTCG 57.107 29.630 0.00 0.00 0.00 3.79
440 513 5.790593 ACACTCTGGAAAATAACTTCGCTA 58.209 37.500 0.00 0.00 0.00 4.26
441 514 6.228258 ACACTCTGGAAAATAACTTCGCTAA 58.772 36.000 0.00 0.00 0.00 3.09
443 516 7.015877 CACTCTGGAAAATAACTTCGCTAAAC 58.984 38.462 0.00 0.00 0.00 2.01
446 519 9.099454 CTCTGGAAAATAACTTCGCTAAACTAT 57.901 33.333 0.00 0.00 0.00 2.12
495 568 9.640963 GCTAAACTATATATAGGTGTCACAAGG 57.359 37.037 21.20 4.32 34.69 3.61
527 623 2.526873 ACAGCTCCCCACGGTCTT 60.527 61.111 0.00 0.00 0.00 3.01
604 711 2.202388 CGCAAGTCGCCAGCAATG 60.202 61.111 0.00 0.00 37.30 2.82
622 729 4.917415 GCAATGATAAGTTCAAAACGCACT 59.083 37.500 0.00 0.00 38.03 4.40
638 745 6.795098 AACGCACTGAGAACAATAATTACA 57.205 33.333 0.00 0.00 0.00 2.41
639 746 6.795098 ACGCACTGAGAACAATAATTACAA 57.205 33.333 0.00 0.00 0.00 2.41
640 747 7.197071 ACGCACTGAGAACAATAATTACAAA 57.803 32.000 0.00 0.00 0.00 2.83
672 779 4.656041 GCACTGACAACAATCATTAGAGC 58.344 43.478 0.00 0.00 0.00 4.09
686 794 4.665009 TCATTAGAGCCAGGGGATGTAAAT 59.335 41.667 0.00 0.00 31.02 1.40
696 804 2.034179 GGGGATGTAAATTAAGCGCCAC 59.966 50.000 2.29 0.00 0.00 5.01
849 962 2.221906 GAAAGCTACCTCGCCCGTGA 62.222 60.000 0.00 0.00 0.00 4.35
898 1018 0.539051 ATCTTGCTCCGTGGAGAAGG 59.461 55.000 19.98 9.93 44.53 3.46
914 1038 0.478589 AAGGGAAAGGGAGGGAAGCT 60.479 55.000 0.00 0.00 0.00 3.74
922 1046 1.253593 GGGAGGGAAGCTTGCAAAGG 61.254 60.000 20.27 0.00 46.35 3.11
941 1065 1.785041 GCACAGCAACTGCCGAGAAA 61.785 55.000 0.00 0.00 43.38 2.52
959 1083 1.627297 AACCTGGGCGGGAAGAGATC 61.627 60.000 0.00 0.00 36.97 2.75
960 1085 2.066393 CCTGGGCGGGAAGAGATCA 61.066 63.158 0.00 0.00 0.00 2.92
961 1086 1.445095 CTGGGCGGGAAGAGATCAG 59.555 63.158 0.00 0.00 0.00 2.90
964 1089 1.221840 GGCGGGAAGAGATCAGCAA 59.778 57.895 0.00 0.00 35.66 3.91
1288 1429 1.452108 GCCAAGGTGGGGAGATTCG 60.452 63.158 0.00 0.00 38.19 3.34
1324 1465 8.832735 AGGTTGGAGTTTTCTTATAGGATTACA 58.167 33.333 0.00 0.00 0.00 2.41
1353 1497 5.230942 CCAATCATTGTACCTAGATCGTCC 58.769 45.833 0.00 0.00 0.00 4.79
1393 1540 2.231964 TCCTTCTTGCCATTGTCATTGC 59.768 45.455 0.00 0.00 0.00 3.56
1413 1560 3.705043 CCTGTTCAGGCATATCTTTGC 57.295 47.619 5.89 0.00 42.01 3.68
1414 1561 3.018856 CCTGTTCAGGCATATCTTTGCA 58.981 45.455 5.89 0.00 44.59 4.08
1415 1562 3.066342 CCTGTTCAGGCATATCTTTGCAG 59.934 47.826 5.89 0.00 44.59 4.41
1436 1612 5.508872 CAGTCTTGCTGTCAGAAAAGAAAG 58.491 41.667 15.98 10.16 40.27 2.62
1453 1629 9.730420 GAAAAGAAAGAACAAATACTAAGCACA 57.270 29.630 0.00 0.00 0.00 4.57
1460 1636 6.546034 AGAACAAATACTAAGCACAGTGGTTT 59.454 34.615 22.57 8.94 39.08 3.27
1489 1665 3.684305 TGTGTGCTTTCAATCTGTATCCG 59.316 43.478 0.00 0.00 0.00 4.18
1490 1666 3.932710 GTGTGCTTTCAATCTGTATCCGA 59.067 43.478 0.00 0.00 0.00 4.55
1491 1667 3.932710 TGTGCTTTCAATCTGTATCCGAC 59.067 43.478 0.00 0.00 0.00 4.79
1492 1668 3.932710 GTGCTTTCAATCTGTATCCGACA 59.067 43.478 0.00 0.00 36.35 4.35
1493 1669 4.572389 GTGCTTTCAATCTGTATCCGACAT 59.428 41.667 0.00 0.00 37.45 3.06
1494 1670 4.571984 TGCTTTCAATCTGTATCCGACATG 59.428 41.667 0.00 0.00 37.45 3.21
1495 1671 4.572389 GCTTTCAATCTGTATCCGACATGT 59.428 41.667 0.00 0.00 37.45 3.21
1496 1672 5.503031 GCTTTCAATCTGTATCCGACATGTG 60.503 44.000 1.15 0.00 37.45 3.21
1497 1673 4.736126 TCAATCTGTATCCGACATGTGT 57.264 40.909 1.15 0.00 37.45 3.72
1498 1674 5.084818 TCAATCTGTATCCGACATGTGTT 57.915 39.130 1.15 0.00 37.45 3.32
1499 1675 5.487433 TCAATCTGTATCCGACATGTGTTT 58.513 37.500 1.15 0.00 37.45 2.83
1500 1676 5.580691 TCAATCTGTATCCGACATGTGTTTC 59.419 40.000 1.15 0.00 37.45 2.78
1501 1677 3.857052 TCTGTATCCGACATGTGTTTCC 58.143 45.455 1.15 0.00 37.45 3.13
1502 1678 3.259625 TCTGTATCCGACATGTGTTTCCA 59.740 43.478 1.15 0.00 37.45 3.53
1503 1679 3.595173 TGTATCCGACATGTGTTTCCAG 58.405 45.455 1.15 0.00 31.20 3.86
1504 1680 2.113860 ATCCGACATGTGTTTCCAGG 57.886 50.000 1.15 0.00 0.00 4.45
1505 1681 0.605319 TCCGACATGTGTTTCCAGGC 60.605 55.000 1.15 0.00 0.00 4.85
1506 1682 1.497278 CGACATGTGTTTCCAGGCG 59.503 57.895 1.15 0.00 0.00 5.52
1507 1683 1.210155 GACATGTGTTTCCAGGCGC 59.790 57.895 1.15 0.00 0.00 6.53
1508 1684 1.514678 GACATGTGTTTCCAGGCGCA 61.515 55.000 10.83 0.00 0.00 6.09
1509 1685 0.895100 ACATGTGTTTCCAGGCGCAT 60.895 50.000 10.83 0.00 36.40 4.73
1510 1686 0.457166 CATGTGTTTCCAGGCGCATG 60.457 55.000 16.49 16.49 43.87 4.06
1521 1697 2.024305 GCGCATGATGAGCTGCAC 59.976 61.111 13.96 0.00 40.12 4.57
1643 1823 1.100510 GTTTTGGCTACCGAATCCCC 58.899 55.000 0.00 0.00 0.00 4.81
1644 1824 0.033894 TTTTGGCTACCGAATCCCCC 60.034 55.000 0.00 0.00 0.00 5.40
1665 1845 3.589139 AAAAACCCGGGAGAGGCT 58.411 55.556 32.02 0.00 0.00 4.58
1681 1861 0.390209 GGCTAGAAACGCGGTTACCA 60.390 55.000 10.60 0.00 0.00 3.25
1682 1862 0.997196 GCTAGAAACGCGGTTACCAG 59.003 55.000 10.60 8.51 0.00 4.00
1695 1875 5.454736 CGGTTACCAGAAAATACCGTTAC 57.545 43.478 1.13 0.00 44.90 2.50
1703 1883 2.836479 AAATACCGTTACAATGCCGC 57.164 45.000 0.00 0.00 0.00 6.53
1715 1895 4.250116 ACAATGCCGCTCAAAATTTACA 57.750 36.364 0.00 0.00 0.00 2.41
1726 1907 8.494347 CCGCTCAAAATTTACAAATGAATTTCA 58.506 29.630 0.75 0.75 34.00 2.69
1791 1975 7.492524 ACTCATATTAGACAAAAGATCGCTCA 58.507 34.615 0.00 0.00 0.00 4.26
1792 1976 7.651304 ACTCATATTAGACAAAAGATCGCTCAG 59.349 37.037 0.00 0.00 0.00 3.35
1793 1977 7.716612 TCATATTAGACAAAAGATCGCTCAGA 58.283 34.615 0.00 0.00 0.00 3.27
1794 1978 8.197439 TCATATTAGACAAAAGATCGCTCAGAA 58.803 33.333 0.00 0.00 0.00 3.02
1795 1979 6.654793 ATTAGACAAAAGATCGCTCAGAAC 57.345 37.500 0.00 0.00 0.00 3.01
1796 1980 4.264460 AGACAAAAGATCGCTCAGAACT 57.736 40.909 0.00 0.00 33.01 3.01
1797 1981 4.636249 AGACAAAAGATCGCTCAGAACTT 58.364 39.130 0.00 0.00 42.74 2.66
1799 1983 5.178438 AGACAAAAGATCGCTCAGAACTTTC 59.822 40.000 4.34 0.00 46.77 2.62
1800 1984 4.214332 ACAAAAGATCGCTCAGAACTTTCC 59.786 41.667 4.34 0.00 46.77 3.13
1801 1985 3.971245 AAGATCGCTCAGAACTTTCCT 57.029 42.857 0.00 0.00 38.61 3.36
1802 1986 3.971245 AGATCGCTCAGAACTTTCCTT 57.029 42.857 0.00 0.00 0.00 3.36
1803 1987 3.594134 AGATCGCTCAGAACTTTCCTTG 58.406 45.455 0.00 0.00 0.00 3.61
1804 1988 1.512926 TCGCTCAGAACTTTCCTTGC 58.487 50.000 0.00 0.00 0.00 4.01
1805 1989 0.164647 CGCTCAGAACTTTCCTTGCG 59.835 55.000 0.00 0.00 34.86 4.85
1806 1990 1.512926 GCTCAGAACTTTCCTTGCGA 58.487 50.000 0.00 0.00 0.00 5.10
1807 1991 1.462670 GCTCAGAACTTTCCTTGCGAG 59.537 52.381 0.00 0.00 0.00 5.03
1808 1992 2.760374 CTCAGAACTTTCCTTGCGAGT 58.240 47.619 0.00 0.00 0.00 4.18
1809 1993 3.134458 CTCAGAACTTTCCTTGCGAGTT 58.866 45.455 0.00 0.00 36.40 3.01
1810 1994 3.541632 TCAGAACTTTCCTTGCGAGTTT 58.458 40.909 0.00 0.00 34.02 2.66
1811 1995 3.560068 TCAGAACTTTCCTTGCGAGTTTC 59.440 43.478 0.00 0.00 34.02 2.78
1812 1996 2.879026 AGAACTTTCCTTGCGAGTTTCC 59.121 45.455 0.00 0.00 34.02 3.13
1813 1997 2.640316 ACTTTCCTTGCGAGTTTCCT 57.360 45.000 0.00 0.00 0.00 3.36
1814 1998 2.932261 ACTTTCCTTGCGAGTTTCCTT 58.068 42.857 0.00 0.00 0.00 3.36
1815 1999 4.081322 ACTTTCCTTGCGAGTTTCCTTA 57.919 40.909 0.00 0.00 0.00 2.69
1816 2000 4.065789 ACTTTCCTTGCGAGTTTCCTTAG 58.934 43.478 0.00 0.00 0.00 2.18
1817 2001 2.094762 TCCTTGCGAGTTTCCTTAGC 57.905 50.000 0.00 0.00 0.00 3.09
1818 2002 1.087501 CCTTGCGAGTTTCCTTAGCC 58.912 55.000 0.00 0.00 0.00 3.93
1819 2003 1.610624 CCTTGCGAGTTTCCTTAGCCA 60.611 52.381 0.00 0.00 0.00 4.75
1820 2004 2.151202 CTTGCGAGTTTCCTTAGCCAA 58.849 47.619 0.00 0.00 0.00 4.52
1821 2005 2.489938 TGCGAGTTTCCTTAGCCAAT 57.510 45.000 0.00 0.00 0.00 3.16
1822 2006 2.790433 TGCGAGTTTCCTTAGCCAATT 58.210 42.857 0.00 0.00 0.00 2.32
1823 2007 3.945346 TGCGAGTTTCCTTAGCCAATTA 58.055 40.909 0.00 0.00 0.00 1.40
1824 2008 4.328536 TGCGAGTTTCCTTAGCCAATTAA 58.671 39.130 0.00 0.00 0.00 1.40
1825 2009 4.762765 TGCGAGTTTCCTTAGCCAATTAAA 59.237 37.500 0.00 0.00 0.00 1.52
1826 2010 5.106317 TGCGAGTTTCCTTAGCCAATTAAAG 60.106 40.000 0.00 0.00 0.00 1.85
1827 2011 5.106277 GCGAGTTTCCTTAGCCAATTAAAGT 60.106 40.000 0.00 0.00 0.00 2.66
1828 2012 6.093082 GCGAGTTTCCTTAGCCAATTAAAGTA 59.907 38.462 0.00 0.00 0.00 2.24
1829 2013 7.201705 GCGAGTTTCCTTAGCCAATTAAAGTAT 60.202 37.037 0.00 0.00 0.00 2.12
1830 2014 8.674607 CGAGTTTCCTTAGCCAATTAAAGTATT 58.325 33.333 0.00 0.00 0.00 1.89
1860 2044 6.755542 TCAAAATTTGAAAATGGGGGTAGT 57.244 33.333 5.87 0.00 36.59 2.73
1861 2045 6.764379 TCAAAATTTGAAAATGGGGGTAGTC 58.236 36.000 5.87 0.00 36.59 2.59
1862 2046 5.755409 AAATTTGAAAATGGGGGTAGTCC 57.245 39.130 0.00 0.00 0.00 3.85
1863 2047 4.692523 ATTTGAAAATGGGGGTAGTCCT 57.307 40.909 0.00 0.00 35.33 3.85
1864 2048 5.806955 ATTTGAAAATGGGGGTAGTCCTA 57.193 39.130 0.00 0.00 35.33 2.94
1869 2053 2.011122 ATGGGGGTAGTCCTATGTCG 57.989 55.000 0.00 0.00 35.33 4.35
1909 2093 4.656117 CAACGCCGGCCCCAAAAC 62.656 66.667 23.46 0.00 0.00 2.43
1968 2153 1.043816 CGGATGGTGATACAGGAGCT 58.956 55.000 0.00 0.00 0.00 4.09
1971 2156 0.471617 ATGGTGATACAGGAGCTGGC 59.528 55.000 0.00 0.00 35.51 4.85
1973 2158 1.147153 GTGATACAGGAGCTGGCCC 59.853 63.158 0.00 0.00 35.51 5.80
1993 2178 2.671396 CCTCCAATTCTCACCGTAAACG 59.329 50.000 0.00 0.00 39.44 3.60
2032 2218 8.504815 CAAACAAATTTGGACATAATTCATGCA 58.495 29.630 21.74 0.00 41.39 3.96
2034 2220 8.618702 ACAAATTTGGACATAATTCATGCAAA 57.381 26.923 21.74 5.91 38.29 3.68
2035 2221 8.505625 ACAAATTTGGACATAATTCATGCAAAC 58.494 29.630 21.74 0.00 38.29 2.93
2036 2222 8.504815 CAAATTTGGACATAATTCATGCAAACA 58.495 29.630 10.49 0.00 38.29 2.83
2037 2223 7.599630 ATTTGGACATAATTCATGCAAACAC 57.400 32.000 0.00 0.00 38.29 3.32
2038 2224 4.731720 TGGACATAATTCATGCAAACACG 58.268 39.130 0.00 0.00 38.29 4.49
2039 2225 4.457257 TGGACATAATTCATGCAAACACGA 59.543 37.500 0.00 0.00 38.29 4.35
2040 2226 4.793216 GGACATAATTCATGCAAACACGAC 59.207 41.667 0.00 0.00 38.29 4.34
2041 2227 5.369685 ACATAATTCATGCAAACACGACA 57.630 34.783 0.00 0.00 38.29 4.35
2055 2241 6.144402 GCAAACACGACAGAATTCATTCAAAT 59.856 34.615 8.44 0.00 39.23 2.32
2059 2245 6.016360 ACACGACAGAATTCATTCAAATGGAA 60.016 34.615 8.44 0.00 39.23 3.53
2169 2363 2.746277 GGCGGCACCTTCGTCATT 60.746 61.111 3.07 0.00 34.51 2.57
2170 2364 2.332654 GGCGGCACCTTCGTCATTT 61.333 57.895 3.07 0.00 34.51 2.32
2179 2373 4.492570 GCACCTTCGTCATTTTCTATGTCG 60.493 45.833 0.00 0.00 33.25 4.35
2180 2374 3.617263 ACCTTCGTCATTTTCTATGTCGC 59.383 43.478 0.00 0.00 32.33 5.19
2186 2380 1.014352 ATTTTCTATGTCGCCGTGGC 58.986 50.000 0.00 0.00 37.85 5.01
2190 2384 3.071837 TATGTCGCCGTGGCCAGA 61.072 61.111 5.11 0.00 37.98 3.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
64 65 1.543607 TCCATGTGTCCCGTAACGTA 58.456 50.000 0.00 0.00 0.00 3.57
91 92 2.414029 GGTGATTTGTGTGTATGTGCCG 60.414 50.000 0.00 0.00 0.00 5.69
100 101 2.318578 GCATGTTCGGTGATTTGTGTG 58.681 47.619 0.00 0.00 0.00 3.82
108 109 0.036858 TTGATCGGCATGTTCGGTGA 60.037 50.000 9.90 0.00 0.00 4.02
109 110 1.016627 ATTGATCGGCATGTTCGGTG 58.983 50.000 9.90 0.00 0.00 4.94
110 111 2.613026 TATTGATCGGCATGTTCGGT 57.387 45.000 9.90 3.80 0.00 4.69
111 112 3.066380 TCATATTGATCGGCATGTTCGG 58.934 45.455 9.90 0.00 0.00 4.30
112 113 4.457810 GTTCATATTGATCGGCATGTTCG 58.542 43.478 0.00 0.00 0.00 3.95
144 166 2.820197 CCCAGCTTAAAGAAACAGGACC 59.180 50.000 0.00 0.00 0.00 4.46
206 279 2.106338 TCAAAGTCCACTTGATGCCTCA 59.894 45.455 0.00 0.00 36.12 3.86
262 335 8.219868 TGATCATCTTGGGAATAGCTATTTTCA 58.780 33.333 19.77 16.78 0.00 2.69
330 403 8.677148 TTGGAGCTTGTATATAACTTGATTCC 57.323 34.615 0.00 0.00 0.00 3.01
334 407 9.461312 ACAATTTGGAGCTTGTATATAACTTGA 57.539 29.630 0.78 0.00 33.96 3.02
335 408 9.507280 CACAATTTGGAGCTTGTATATAACTTG 57.493 33.333 0.78 0.00 33.96 3.16
336 409 9.243105 ACACAATTTGGAGCTTGTATATAACTT 57.757 29.630 0.78 0.00 33.96 2.66
337 410 8.807948 ACACAATTTGGAGCTTGTATATAACT 57.192 30.769 0.78 0.00 33.96 2.24
340 413 9.674068 TGTTACACAATTTGGAGCTTGTATATA 57.326 29.630 0.78 0.00 33.96 0.86
341 414 8.574251 TGTTACACAATTTGGAGCTTGTATAT 57.426 30.769 0.78 0.00 33.96 0.86
342 415 7.987750 TGTTACACAATTTGGAGCTTGTATA 57.012 32.000 0.78 0.00 33.96 1.47
343 416 6.892658 TGTTACACAATTTGGAGCTTGTAT 57.107 33.333 0.78 0.00 33.96 2.29
344 417 6.701145 TTGTTACACAATTTGGAGCTTGTA 57.299 33.333 0.78 0.00 32.34 2.41
345 418 5.590530 TTGTTACACAATTTGGAGCTTGT 57.409 34.783 0.78 0.00 32.34 3.16
369 442 8.359642 GCTTTCCATATATAATGCCAACAAAGA 58.640 33.333 0.00 0.00 0.00 2.52
370 443 7.599998 GGCTTTCCATATATAATGCCAACAAAG 59.400 37.037 15.42 0.00 42.51 2.77
371 444 7.070447 TGGCTTTCCATATATAATGCCAACAAA 59.930 33.333 18.64 3.27 46.73 2.83
372 445 6.552725 TGGCTTTCCATATATAATGCCAACAA 59.447 34.615 18.64 3.53 46.73 2.83
373 446 6.073981 TGGCTTTCCATATATAATGCCAACA 58.926 36.000 18.64 3.79 46.73 3.33
374 447 6.588719 TGGCTTTCCATATATAATGCCAAC 57.411 37.500 18.64 1.96 46.73 3.77
377 450 6.576185 CCATTGGCTTTCCATATATAATGCC 58.424 40.000 14.19 14.19 43.05 4.40
378 451 6.044682 GCCATTGGCTTTCCATATATAATGC 58.955 40.000 20.66 0.00 46.69 3.56
395 468 1.663695 ATTTCGTAGTCGGCCATTGG 58.336 50.000 2.24 0.00 37.69 3.16
396 469 4.093703 TGTTTATTTCGTAGTCGGCCATTG 59.906 41.667 2.24 0.00 37.69 2.82
397 470 4.093850 GTGTTTATTTCGTAGTCGGCCATT 59.906 41.667 2.24 0.00 37.69 3.16
398 471 3.619929 GTGTTTATTTCGTAGTCGGCCAT 59.380 43.478 2.24 0.00 37.69 4.40
399 472 2.995258 GTGTTTATTTCGTAGTCGGCCA 59.005 45.455 2.24 0.00 37.69 5.36
400 473 3.256558 AGTGTTTATTTCGTAGTCGGCC 58.743 45.455 0.00 0.00 37.69 6.13
401 474 4.031426 CAGAGTGTTTATTTCGTAGTCGGC 59.969 45.833 0.00 0.00 37.69 5.54
402 475 4.561606 CCAGAGTGTTTATTTCGTAGTCGG 59.438 45.833 0.00 0.00 37.69 4.79
403 476 5.396484 TCCAGAGTGTTTATTTCGTAGTCG 58.604 41.667 0.00 0.00 38.55 4.18
404 477 7.647907 TTTCCAGAGTGTTTATTTCGTAGTC 57.352 36.000 0.00 0.00 0.00 2.59
408 481 9.063615 AGTTATTTTCCAGAGTGTTTATTTCGT 57.936 29.630 0.00 0.00 0.00 3.85
417 490 4.642429 AGCGAAGTTATTTTCCAGAGTGT 58.358 39.130 0.00 0.00 0.00 3.55
469 542 9.640963 CCTTGTGACACCTATATATAGTTTAGC 57.359 37.037 16.78 4.99 0.00 3.09
473 546 9.830186 ATCTCCTTGTGACACCTATATATAGTT 57.170 33.333 16.78 1.62 0.00 2.24
474 547 9.830186 AATCTCCTTGTGACACCTATATATAGT 57.170 33.333 16.78 1.48 0.00 2.12
480 553 8.585881 GCTATTAATCTCCTTGTGACACCTATA 58.414 37.037 2.45 0.00 0.00 1.31
482 555 6.183360 GGCTATTAATCTCCTTGTGACACCTA 60.183 42.308 2.45 0.00 0.00 3.08
484 557 4.816925 GGCTATTAATCTCCTTGTGACACC 59.183 45.833 2.45 0.00 0.00 4.16
485 558 5.525378 CAGGCTATTAATCTCCTTGTGACAC 59.475 44.000 0.00 0.00 0.00 3.67
486 559 5.425217 TCAGGCTATTAATCTCCTTGTGACA 59.575 40.000 5.85 0.00 0.00 3.58
487 560 5.755861 GTCAGGCTATTAATCTCCTTGTGAC 59.244 44.000 5.85 7.80 0.00 3.67
488 561 5.425217 TGTCAGGCTATTAATCTCCTTGTGA 59.575 40.000 5.85 0.90 0.00 3.58
490 563 5.686124 GCTGTCAGGCTATTAATCTCCTTGT 60.686 44.000 1.14 0.00 0.00 3.16
491 564 4.754114 GCTGTCAGGCTATTAATCTCCTTG 59.246 45.833 1.14 3.67 0.00 3.61
492 565 4.657969 AGCTGTCAGGCTATTAATCTCCTT 59.342 41.667 1.14 0.00 41.16 3.36
493 566 4.230455 AGCTGTCAGGCTATTAATCTCCT 58.770 43.478 1.14 0.00 41.16 3.69
494 567 4.562552 GGAGCTGTCAGGCTATTAATCTCC 60.563 50.000 1.14 2.13 43.20 3.71
495 568 4.562552 GGGAGCTGTCAGGCTATTAATCTC 60.563 50.000 1.14 0.00 43.20 2.75
496 569 3.326297 GGGAGCTGTCAGGCTATTAATCT 59.674 47.826 1.14 0.00 43.20 2.40
597 704 4.916831 TGCGTTTTGAACTTATCATTGCTG 59.083 37.500 0.00 0.00 38.03 4.41
604 711 5.591643 TCTCAGTGCGTTTTGAACTTATC 57.408 39.130 0.00 0.00 32.40 1.75
672 779 2.293399 GCGCTTAATTTACATCCCCTGG 59.707 50.000 0.00 0.00 0.00 4.45
686 794 0.455972 GTACGTACGGTGGCGCTTAA 60.456 55.000 21.06 0.00 0.00 1.85
750 858 7.587037 TGCTTGCATATATAGCCTTCTTTTT 57.413 32.000 4.93 0.00 34.03 1.94
849 962 2.663196 GCCGTGTGCTCCCTACTT 59.337 61.111 0.00 0.00 36.87 2.24
898 1018 0.967887 GCAAGCTTCCCTCCCTTTCC 60.968 60.000 0.00 0.00 0.00 3.13
941 1065 2.041265 ATCTCTTCCCGCCCAGGT 59.959 61.111 0.00 0.00 38.74 4.00
950 1074 1.135915 TCTCGCTTGCTGATCTCTTCC 59.864 52.381 0.00 0.00 0.00 3.46
959 1083 1.412250 CTCTCGCTTCTCGCTTGCTG 61.412 60.000 0.00 0.00 38.27 4.41
960 1085 1.153862 CTCTCGCTTCTCGCTTGCT 60.154 57.895 0.00 0.00 38.27 3.91
961 1086 2.797462 GCTCTCGCTTCTCGCTTGC 61.797 63.158 0.00 0.00 38.27 4.01
964 1089 3.436055 ACGCTCTCGCTTCTCGCT 61.436 61.111 0.00 0.00 39.84 4.93
998 1123 1.542767 CCAGCTCCAGTATCAGCATGG 60.543 57.143 0.00 0.00 38.18 3.66
1218 1350 2.809601 CACGACGAAGGGCGAAGG 60.810 66.667 0.00 0.00 44.57 3.46
1324 1465 7.526192 CGATCTAGGTACAATGATTGGGAATCT 60.526 40.741 10.27 3.18 38.72 2.40
1353 1497 4.285863 AGGAGAAGAGGTATTCACAGAGG 58.714 47.826 0.00 0.00 0.00 3.69
1414 1561 5.431765 TCTTTCTTTTCTGACAGCAAGACT 58.568 37.500 13.63 0.00 0.00 3.24
1415 1562 5.741388 TCTTTCTTTTCTGACAGCAAGAC 57.259 39.130 13.63 0.00 0.00 3.01
1436 1612 5.941948 ACCACTGTGCTTAGTATTTGTTC 57.058 39.130 1.29 0.00 0.00 3.18
1480 1656 3.259625 TGGAAACACATGTCGGATACAGA 59.740 43.478 0.00 0.00 37.08 3.41
1481 1657 3.595173 TGGAAACACATGTCGGATACAG 58.405 45.455 0.00 0.00 37.08 2.74
1485 1661 1.950484 GCCTGGAAACACATGTCGGAT 60.950 52.381 0.00 0.00 35.60 4.18
1489 1665 1.210155 GCGCCTGGAAACACATGTC 59.790 57.895 0.00 0.00 35.60 3.06
1490 1666 0.895100 ATGCGCCTGGAAACACATGT 60.895 50.000 4.18 0.00 35.60 3.21
1491 1667 0.457166 CATGCGCCTGGAAACACATG 60.457 55.000 4.18 0.00 35.59 3.21
1492 1668 0.608856 TCATGCGCCTGGAAACACAT 60.609 50.000 12.90 0.00 35.60 3.21
1493 1669 0.608856 ATCATGCGCCTGGAAACACA 60.609 50.000 12.90 0.00 35.60 3.72
1494 1670 0.179156 CATCATGCGCCTGGAAACAC 60.179 55.000 12.90 0.00 35.60 3.32
1495 1671 0.322366 TCATCATGCGCCTGGAAACA 60.322 50.000 12.90 0.00 39.59 2.83
1496 1672 0.379669 CTCATCATGCGCCTGGAAAC 59.620 55.000 12.90 0.00 0.00 2.78
1497 1673 1.378882 GCTCATCATGCGCCTGGAAA 61.379 55.000 12.90 0.00 0.00 3.13
1498 1674 1.820906 GCTCATCATGCGCCTGGAA 60.821 57.895 12.90 0.00 0.00 3.53
1499 1675 2.203112 GCTCATCATGCGCCTGGA 60.203 61.111 12.90 3.98 0.00 3.86
1500 1676 2.203167 AGCTCATCATGCGCCTGG 60.203 61.111 12.90 0.00 35.28 4.45
1501 1677 3.023118 CAGCTCATCATGCGCCTG 58.977 61.111 4.18 5.39 35.28 4.85
1502 1678 2.900838 GCAGCTCATCATGCGCCT 60.901 61.111 4.18 0.00 35.28 5.52
1503 1679 3.206957 TGCAGCTCATCATGCGCC 61.207 61.111 4.18 0.00 45.54 6.53
1504 1680 2.024305 GTGCAGCTCATCATGCGC 59.976 61.111 0.00 0.00 45.54 6.09
1505 1681 1.650314 TTGGTGCAGCTCATCATGCG 61.650 55.000 18.08 0.00 45.54 4.73
1506 1682 0.100682 CTTGGTGCAGCTCATCATGC 59.899 55.000 18.08 0.00 42.86 4.06
1507 1683 0.100682 GCTTGGTGCAGCTCATCATG 59.899 55.000 18.08 0.00 42.31 3.07
1508 1684 1.035932 GGCTTGGTGCAGCTCATCAT 61.036 55.000 18.08 0.00 45.15 2.45
1509 1685 1.676635 GGCTTGGTGCAGCTCATCA 60.677 57.895 18.08 0.00 45.15 3.07
1510 1686 1.378250 AGGCTTGGTGCAGCTCATC 60.378 57.895 18.08 4.75 45.15 2.92
1621 1800 2.164338 GGATTCGGTAGCCAAAACCAA 58.836 47.619 0.00 0.00 36.78 3.67
1622 1801 1.614850 GGGATTCGGTAGCCAAAACCA 60.615 52.381 0.00 0.00 36.78 3.67
1652 1832 0.976590 GTTTCTAGCCTCTCCCGGGT 60.977 60.000 22.86 1.40 38.53 5.28
1655 1835 1.227002 GCGTTTCTAGCCTCTCCCG 60.227 63.158 0.00 0.00 0.00 5.14
1659 1839 1.135170 GTAACCGCGTTTCTAGCCTCT 60.135 52.381 4.92 0.00 0.00 3.69
1665 1845 3.383620 TTTCTGGTAACCGCGTTTCTA 57.616 42.857 4.92 0.00 0.00 2.10
1681 1861 3.181504 GCGGCATTGTAACGGTATTTTCT 60.182 43.478 0.00 0.00 0.00 2.52
1682 1862 3.103007 GCGGCATTGTAACGGTATTTTC 58.897 45.455 0.00 0.00 0.00 2.29
1692 1872 5.773575 TGTAAATTTTGAGCGGCATTGTAA 58.226 33.333 1.45 0.00 0.00 2.41
1693 1873 5.378292 TGTAAATTTTGAGCGGCATTGTA 57.622 34.783 1.45 0.00 0.00 2.41
1694 1874 4.250116 TGTAAATTTTGAGCGGCATTGT 57.750 36.364 1.45 0.00 0.00 2.71
1695 1875 5.588568 TTTGTAAATTTTGAGCGGCATTG 57.411 34.783 1.45 0.00 0.00 2.82
1791 1975 2.879026 GGAAACTCGCAAGGAAAGTTCT 59.121 45.455 0.00 0.00 31.58 3.01
1792 1976 2.879026 AGGAAACTCGCAAGGAAAGTTC 59.121 45.455 0.00 0.00 32.90 3.01
1793 1977 2.932261 AGGAAACTCGCAAGGAAAGTT 58.068 42.857 0.00 0.00 32.90 2.66
1794 1978 2.640316 AGGAAACTCGCAAGGAAAGT 57.360 45.000 0.00 0.00 32.90 2.66
1795 1979 3.120165 GCTAAGGAAACTCGCAAGGAAAG 60.120 47.826 0.00 0.00 42.68 2.62
1796 1980 2.812011 GCTAAGGAAACTCGCAAGGAAA 59.188 45.455 0.00 0.00 42.68 3.13
1797 1981 2.423577 GCTAAGGAAACTCGCAAGGAA 58.576 47.619 0.00 0.00 42.68 3.36
1798 1982 1.338769 GGCTAAGGAAACTCGCAAGGA 60.339 52.381 0.00 0.00 42.68 3.36
1799 1983 1.087501 GGCTAAGGAAACTCGCAAGG 58.912 55.000 0.00 0.00 42.68 3.61
1800 1984 1.808411 TGGCTAAGGAAACTCGCAAG 58.192 50.000 0.00 0.00 42.68 4.01
1801 1985 2.264005 TTGGCTAAGGAAACTCGCAA 57.736 45.000 0.00 0.00 42.68 4.85
1802 1986 2.489938 ATTGGCTAAGGAAACTCGCA 57.510 45.000 0.00 0.00 42.68 5.10
1803 1987 4.957759 TTAATTGGCTAAGGAAACTCGC 57.042 40.909 0.00 0.00 42.68 5.03
1804 1988 6.496338 ACTTTAATTGGCTAAGGAAACTCG 57.504 37.500 0.00 0.00 42.68 4.18
1837 2021 6.239743 GGACTACCCCCATTTTCAAATTTTGA 60.240 38.462 7.74 7.74 38.04 2.69
1838 2022 5.937540 GGACTACCCCCATTTTCAAATTTTG 59.062 40.000 2.59 2.59 0.00 2.44
1839 2023 5.849475 AGGACTACCCCCATTTTCAAATTTT 59.151 36.000 0.00 0.00 36.73 1.82
1840 2024 5.411493 AGGACTACCCCCATTTTCAAATTT 58.589 37.500 0.00 0.00 36.73 1.82
1841 2025 5.023514 AGGACTACCCCCATTTTCAAATT 57.976 39.130 0.00 0.00 36.73 1.82
1842 2026 4.692523 AGGACTACCCCCATTTTCAAAT 57.307 40.909 0.00 0.00 36.73 2.32
1843 2027 5.015817 ACATAGGACTACCCCCATTTTCAAA 59.984 40.000 0.00 0.00 36.73 2.69
1844 2028 4.542525 ACATAGGACTACCCCCATTTTCAA 59.457 41.667 0.00 0.00 36.73 2.69
1845 2029 4.116113 ACATAGGACTACCCCCATTTTCA 58.884 43.478 0.00 0.00 36.73 2.69
1846 2030 4.715713 GACATAGGACTACCCCCATTTTC 58.284 47.826 0.00 0.00 36.73 2.29
1847 2031 3.135895 CGACATAGGACTACCCCCATTTT 59.864 47.826 0.00 0.00 36.73 1.82
1848 2032 2.704065 CGACATAGGACTACCCCCATTT 59.296 50.000 0.00 0.00 36.73 2.32
1849 2033 2.326428 CGACATAGGACTACCCCCATT 58.674 52.381 0.00 0.00 36.73 3.16
1850 2034 2.011122 CGACATAGGACTACCCCCAT 57.989 55.000 0.00 0.00 36.73 4.00
1851 2035 0.757935 GCGACATAGGACTACCCCCA 60.758 60.000 0.00 0.00 36.73 4.96
1852 2036 0.469518 AGCGACATAGGACTACCCCC 60.470 60.000 0.00 0.00 36.73 5.40
1853 2037 0.674534 CAGCGACATAGGACTACCCC 59.325 60.000 0.00 0.00 36.73 4.95
1854 2038 1.067212 CACAGCGACATAGGACTACCC 59.933 57.143 0.00 0.00 36.73 3.69
1855 2039 1.067212 CCACAGCGACATAGGACTACC 59.933 57.143 0.00 0.00 0.00 3.18
1856 2040 1.749634 ACCACAGCGACATAGGACTAC 59.250 52.381 0.00 0.00 0.00 2.73
1857 2041 2.139323 ACCACAGCGACATAGGACTA 57.861 50.000 0.00 0.00 0.00 2.59
1858 2042 1.066858 CAACCACAGCGACATAGGACT 60.067 52.381 0.00 0.00 0.00 3.85
1859 2043 1.359848 CAACCACAGCGACATAGGAC 58.640 55.000 0.00 0.00 0.00 3.85
1860 2044 0.249120 CCAACCACAGCGACATAGGA 59.751 55.000 0.00 0.00 0.00 2.94
1861 2045 0.036388 ACCAACCACAGCGACATAGG 60.036 55.000 0.00 0.00 0.00 2.57
1862 2046 1.337728 TGACCAACCACAGCGACATAG 60.338 52.381 0.00 0.00 0.00 2.23
1863 2047 0.682292 TGACCAACCACAGCGACATA 59.318 50.000 0.00 0.00 0.00 2.29
1864 2048 0.603707 CTGACCAACCACAGCGACAT 60.604 55.000 0.00 0.00 0.00 3.06
1869 2053 0.250901 ATGACCTGACCAACCACAGC 60.251 55.000 0.00 0.00 33.40 4.40
1944 2129 1.345741 CCTGTATCACCATCCGCAGAT 59.654 52.381 0.00 0.00 0.00 2.90
1947 2132 0.752658 CTCCTGTATCACCATCCGCA 59.247 55.000 0.00 0.00 0.00 5.69
1957 2142 1.751563 GAGGGCCAGCTCCTGTATC 59.248 63.158 6.18 0.00 34.21 2.24
1968 2153 1.691219 GGTGAGAATTGGAGGGCCA 59.309 57.895 6.18 0.00 44.17 5.36
1971 2156 3.007635 GTTTACGGTGAGAATTGGAGGG 58.992 50.000 0.00 0.00 0.00 4.30
1973 2158 3.323243 ACGTTTACGGTGAGAATTGGAG 58.677 45.455 7.24 0.00 44.95 3.86
1993 2178 3.357166 TTTGTTTGTATTGTGGCCGAC 57.643 42.857 0.00 0.00 0.00 4.79
2032 2218 6.642131 CCATTTGAATGAATTCTGTCGTGTTT 59.358 34.615 7.05 0.00 38.70 2.83
2034 2220 5.473162 TCCATTTGAATGAATTCTGTCGTGT 59.527 36.000 7.05 0.00 38.70 4.49
2035 2221 5.941733 TCCATTTGAATGAATTCTGTCGTG 58.058 37.500 7.05 4.93 38.70 4.35
2036 2222 6.573664 TTCCATTTGAATGAATTCTGTCGT 57.426 33.333 7.05 0.00 38.70 4.34
2037 2223 9.571810 TTAATTCCATTTGAATGAATTCTGTCG 57.428 29.630 7.05 0.00 42.97 4.35
2136 2330 2.258591 CCGACCAGTCACTGTCCG 59.741 66.667 3.56 6.58 0.00 4.79
2137 2331 2.048127 GCCGACCAGTCACTGTCC 60.048 66.667 3.56 0.00 0.00 4.02
2163 2357 1.924524 ACGGCGACATAGAAAATGACG 59.075 47.619 16.62 5.68 39.43 4.35
2167 2361 1.014352 GCCACGGCGACATAGAAAAT 58.986 50.000 16.62 0.00 0.00 1.82
2169 2363 1.448893 GGCCACGGCGACATAGAAA 60.449 57.895 16.62 0.00 43.06 2.52
2170 2364 2.185867 GGCCACGGCGACATAGAA 59.814 61.111 16.62 0.00 43.06 2.10
2180 2374 4.394712 GGACCACTCTGGCCACGG 62.395 72.222 0.00 2.26 42.67 4.94


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.