Multiple sequence alignment - TraesCS2B01G434200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G434200 chr2B 100.000 2720 0 0 1 2720 624288454 624285735 0.000000e+00 5024
1 TraesCS2B01G434200 chr2B 87.119 295 31 5 1121 1413 623869995 623869706 7.260000e-86 327
2 TraesCS2B01G434200 chr2D 91.923 2278 107 28 2 2223 527273754 527271498 0.000000e+00 3116
3 TraesCS2B01G434200 chr2D 87.415 294 30 5 1122 1413 527004248 527003960 5.610000e-87 331
4 TraesCS2B01G434200 chr2D 88.976 254 11 10 2223 2460 527271457 527271205 5.690000e-77 298
5 TraesCS2B01G434200 chr2A 90.320 2283 128 45 9 2223 672266860 672264603 0.000000e+00 2905
6 TraesCS2B01G434200 chr2A 90.688 247 11 9 2223 2460 672264574 672264331 4.370000e-83 318
7 TraesCS2B01G434200 chr2A 87.170 265 17 7 2459 2718 672264289 672264037 4.430000e-73 285
8 TraesCS2B01G434200 chr6A 88.542 288 30 1 1130 1414 465316673 465316960 2.000000e-91 346
9 TraesCS2B01G434200 chr6D 88.194 288 31 1 1130 1414 326572779 326573066 9.330000e-90 340


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G434200 chr2B 624285735 624288454 2719 True 5024.000000 5024 100.000000 1 2720 1 chr2B.!!$R2 2719
1 TraesCS2B01G434200 chr2D 527271205 527273754 2549 True 1707.000000 3116 90.449500 2 2460 2 chr2D.!!$R2 2458
2 TraesCS2B01G434200 chr2A 672264037 672266860 2823 True 1169.333333 2905 89.392667 9 2718 3 chr2A.!!$R1 2709

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
559 600 0.532573 TTTTGCACAACGGAAAGCCA 59.467 45.0 0.0 0.0 36.19 4.75 F
987 1065 0.852777 CTTGTCAGTTGTCACGTCGG 59.147 55.0 0.0 0.0 0.00 4.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1575 1662 0.451628 CGTCGAGAAACGCGTAGTCA 60.452 55.0 14.46 0.0 42.26 3.41 R
2208 2311 0.597118 GCTGGCAACACGCAAAATGA 60.597 50.0 0.00 0.0 46.17 2.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
73 74 1.216064 ACATTATGCAGGGAGAGCCA 58.784 50.000 0.00 0.00 35.15 4.75
81 82 1.474143 GCAGGGAGAGCCACATTAGTC 60.474 57.143 0.00 0.00 35.15 2.59
156 170 3.602265 CGCTTTACTTTGCTTTGCTTTGC 60.602 43.478 0.00 0.00 0.00 3.68
157 171 3.557185 GCTTTACTTTGCTTTGCTTTGCT 59.443 39.130 0.00 0.00 0.00 3.91
158 172 4.034394 GCTTTACTTTGCTTTGCTTTGCTT 59.966 37.500 0.00 0.00 0.00 3.91
159 173 5.447683 GCTTTACTTTGCTTTGCTTTGCTTT 60.448 36.000 0.00 0.00 0.00 3.51
160 174 5.467902 TTACTTTGCTTTGCTTTGCTTTG 57.532 34.783 0.00 0.00 0.00 2.77
225 239 3.689649 CCTCTAACGAACCCATTTTCCTG 59.310 47.826 0.00 0.00 0.00 3.86
238 252 0.895100 TTTCCTGTGCCATCTGCCAC 60.895 55.000 0.00 0.00 40.16 5.01
252 266 2.677875 CCACCTGCCTTGCCCTTC 60.678 66.667 0.00 0.00 0.00 3.46
327 350 2.091541 TGCATTACAAGTAAGCAGGCC 58.908 47.619 0.00 0.00 31.07 5.19
363 387 8.924511 TCTTTTGGATCTAAGAACAGTGATTT 57.075 30.769 0.00 0.00 0.00 2.17
500 532 2.586914 TCGCGCTCGATCGTCCTA 60.587 61.111 15.94 0.00 40.21 2.94
504 536 1.500512 GCGCTCGATCGTCCTACTCT 61.501 60.000 15.94 0.00 0.00 3.24
505 537 1.780806 CGCTCGATCGTCCTACTCTA 58.219 55.000 15.94 0.00 0.00 2.43
506 538 1.456544 CGCTCGATCGTCCTACTCTAC 59.543 57.143 15.94 0.00 0.00 2.59
508 540 2.806019 GCTCGATCGTCCTACTCTACCA 60.806 54.545 15.94 0.00 0.00 3.25
510 542 3.201290 TCGATCGTCCTACTCTACCAAC 58.799 50.000 15.94 0.00 0.00 3.77
511 543 2.033065 CGATCGTCCTACTCTACCAACG 60.033 54.545 7.03 0.00 0.00 4.10
515 547 2.686915 CGTCCTACTCTACCAACGGAAT 59.313 50.000 0.00 0.00 0.00 3.01
516 548 3.879295 CGTCCTACTCTACCAACGGAATA 59.121 47.826 0.00 0.00 0.00 1.75
517 549 4.260948 CGTCCTACTCTACCAACGGAATAC 60.261 50.000 0.00 0.00 0.00 1.89
518 550 4.641989 GTCCTACTCTACCAACGGAATACA 59.358 45.833 0.00 0.00 0.00 2.29
519 551 4.641989 TCCTACTCTACCAACGGAATACAC 59.358 45.833 0.00 0.00 0.00 2.90
520 552 3.881937 ACTCTACCAACGGAATACACC 57.118 47.619 0.00 0.00 0.00 4.16
523 555 5.018809 ACTCTACCAACGGAATACACCTAA 58.981 41.667 0.00 0.00 0.00 2.69
533 574 4.317558 CGGAATACACCTAATAAACACGCG 60.318 45.833 3.53 3.53 0.00 6.01
559 600 0.532573 TTTTGCACAACGGAAAGCCA 59.467 45.000 0.00 0.00 36.19 4.75
588 639 1.062428 CCATGGGGTGGTAGTAGGAGA 60.062 57.143 2.85 0.00 43.44 3.71
627 678 1.524621 ATGTAGCAGCATGACGGCC 60.525 57.895 0.00 0.00 40.83 6.13
741 810 3.424829 GCATGTCATTCACATTTCGTCGT 60.425 43.478 0.00 0.00 43.89 4.34
800 869 2.125106 ATTGACTTCCGGCGAGGC 60.125 61.111 9.30 0.01 40.77 4.70
801 870 4.735132 TTGACTTCCGGCGAGGCG 62.735 66.667 9.30 12.20 40.77 5.52
821 890 3.214845 GGAGATCCGTACGGGCGT 61.215 66.667 32.80 19.49 34.94 5.68
866 939 1.136000 CGCATCGCACTCATCAAACAA 60.136 47.619 0.00 0.00 0.00 2.83
867 940 2.512885 GCATCGCACTCATCAAACAAG 58.487 47.619 0.00 0.00 0.00 3.16
874 947 3.243168 GCACTCATCAAACAAGCAACTCA 60.243 43.478 0.00 0.00 0.00 3.41
987 1065 0.852777 CTTGTCAGTTGTCACGTCGG 59.147 55.000 0.00 0.00 0.00 4.79
1206 1287 3.580319 ACCTGGGGCAAGTGGGTC 61.580 66.667 0.00 0.00 0.00 4.46
1395 1476 3.636231 CCCAAGGACGTCCAGGCA 61.636 66.667 35.00 0.00 38.89 4.75
1554 1641 1.137675 CTGATCGAGAATGCAGGACCA 59.862 52.381 0.00 0.00 0.00 4.02
1575 1662 2.041701 GAATATGGTGGCATTGGGCTT 58.958 47.619 0.00 0.00 44.01 4.35
1611 1698 2.050350 CGTGCCGGACTTCCTCCTA 61.050 63.158 5.05 0.00 36.80 2.94
1680 1767 1.069378 GGGATGACGTCGACGACAAC 61.069 60.000 41.52 35.52 45.56 3.32
1754 1841 2.908428 GGCCGGATGCATGCATGA 60.908 61.111 36.73 15.31 43.89 3.07
1784 1871 3.072915 TCTTTTGCTGGATCTCTTGGTCA 59.927 43.478 0.00 0.00 0.00 4.02
1815 1902 7.117236 GCATGCTAGTGTTACAACTTACTAACA 59.883 37.037 11.37 0.00 31.77 2.41
1834 1921 3.863942 TCGTCGATCGACACTAACG 57.136 52.632 38.62 27.57 44.77 3.18
1849 1936 5.467705 ACACTAACGTCTTCGCTAAAGATT 58.532 37.500 0.00 0.00 45.57 2.40
1979 2066 3.643159 ACTTTGATTTCCCGCTTTCAC 57.357 42.857 0.00 0.00 0.00 3.18
2021 2112 4.781087 AGGTTCAGCTTGTAATAGGGTACA 59.219 41.667 0.00 0.00 32.11 2.90
2082 2174 2.121564 TTTTGCACTGCAGCTCGAGC 62.122 55.000 30.01 30.01 40.61 5.03
2156 2258 6.596497 GTGTAAGATCCGTTTTCCCATCTTTA 59.404 38.462 0.00 0.00 36.98 1.85
2255 2403 2.545952 GGTCTCCACACACACAGTACTG 60.546 54.545 21.44 21.44 0.00 2.74
2267 2415 3.377485 ACACAGTACTGGTAGCGTATGAG 59.623 47.826 26.12 0.00 34.19 2.90
2424 2580 2.094234 GTCTCTTCTTGTCCTCAGGCTC 60.094 54.545 0.00 0.00 0.00 4.70
2431 2587 0.035725 TGTCCTCAGGCTCAGCATTG 60.036 55.000 0.00 0.00 0.00 2.82
2432 2588 0.251354 GTCCTCAGGCTCAGCATTGA 59.749 55.000 0.00 0.35 0.00 2.57
2447 2609 1.860950 CATTGAGTATGCTCGTTCCCG 59.139 52.381 6.32 0.00 44.48 5.14
2453 2615 0.800012 TATGCTCGTTCCCGTTTTGC 59.200 50.000 0.00 0.00 35.01 3.68
2475 2680 1.677633 GCCGGCCCACTACAACAAT 60.678 57.895 18.11 0.00 0.00 2.71
2482 2687 4.202223 CGGCCCACTACAACAATACTATCT 60.202 45.833 0.00 0.00 0.00 1.98
2546 2752 2.167693 TGATTGTAGCCGTCCGAGAAAT 59.832 45.455 0.00 0.00 0.00 2.17
2579 2785 0.239879 GCATACGGTTGTGGTTGGTG 59.760 55.000 0.00 0.00 0.00 4.17
2580 2786 1.600023 CATACGGTTGTGGTTGGTGT 58.400 50.000 0.00 0.00 0.00 4.16
2581 2787 2.768698 CATACGGTTGTGGTTGGTGTA 58.231 47.619 0.00 0.00 0.00 2.90
2589 2795 4.382291 GTTGTGGTTGGTGTAGTATGTCA 58.618 43.478 0.00 0.00 0.00 3.58
2626 2832 7.278424 TGGTTAGTGGCATAGTATTTTTCGTAC 59.722 37.037 0.00 0.00 0.00 3.67
2633 2839 7.442666 TGGCATAGTATTTTTCGTACATGCATA 59.557 33.333 0.00 0.00 37.78 3.14
2647 2853 3.242518 CATGCATATGGGACGTACGTAG 58.757 50.000 22.87 6.59 0.00 3.51
2652 2858 3.814268 GGGACGTACGTAGGCGCA 61.814 66.667 22.87 0.00 42.83 6.09
2653 2859 2.577911 GGACGTACGTAGGCGCAC 60.578 66.667 22.87 6.68 42.83 5.34
2677 2883 9.507329 CACCAAAACTATATAGCAATGTATCCT 57.493 33.333 9.78 0.00 0.00 3.24
2684 2890 9.367444 ACTATATAGCAATGTATCCTTTTACGC 57.633 33.333 9.78 0.00 0.00 4.42
2685 2891 5.941948 ATAGCAATGTATCCTTTTACGCC 57.058 39.130 0.00 0.00 0.00 5.68
2686 2892 2.612212 AGCAATGTATCCTTTTACGCCG 59.388 45.455 0.00 0.00 0.00 6.46
2688 2894 1.589803 ATGTATCCTTTTACGCCGGC 58.410 50.000 19.07 19.07 0.00 6.13
2700 2908 4.597215 GCCGGCGCCGTTAGGTAT 62.597 66.667 43.12 0.00 40.50 2.73
2704 2912 0.599204 CGGCGCCGTTAGGTATGAAT 60.599 55.000 39.71 0.00 40.50 2.57
2705 2913 1.589803 GGCGCCGTTAGGTATGAATT 58.410 50.000 12.58 0.00 40.50 2.17
2706 2914 1.263217 GGCGCCGTTAGGTATGAATTG 59.737 52.381 12.58 0.00 40.50 2.32
2718 2926 3.673809 GGTATGAATTGCTACGATCGACC 59.326 47.826 24.34 10.27 0.00 4.79
2719 2927 2.951457 TGAATTGCTACGATCGACCA 57.049 45.000 24.34 12.24 0.00 4.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.004419 CGTTATTCCAGCGTGAGAGGATA 59.996 47.826 0.00 0.00 36.83 2.59
7 8 1.358725 GCTGCGTTATTCCAGCGTGA 61.359 55.000 0.00 0.00 44.12 4.35
20 21 6.238022 GGAATAGTTTAAGATAAACGCTGCGT 60.238 38.462 23.57 23.57 43.97 5.24
111 113 1.803334 CTGCCTAGCCGTGTGTTTTA 58.197 50.000 0.00 0.00 0.00 1.52
238 252 2.202236 TAGCAGAAGGGCAAGGCAGG 62.202 60.000 0.00 0.00 35.83 4.85
252 266 2.072298 GAGTGCCTTGTCAACTAGCAG 58.928 52.381 0.00 0.00 0.00 4.24
313 327 0.995024 ATCTGGGCCTGCTTACTTGT 59.005 50.000 4.53 0.00 0.00 3.16
314 328 1.673168 GATCTGGGCCTGCTTACTTG 58.327 55.000 4.53 0.00 0.00 3.16
327 350 7.712639 TCTTAGATCCAAAAGATTTCGATCTGG 59.287 37.037 17.58 12.29 37.08 3.86
363 387 7.980062 TCGTGCTAAGTATTAAAAATGCATCA 58.020 30.769 0.00 0.00 31.02 3.07
382 406 1.228552 ACCAAATTGGCCTCGTGCT 60.229 52.632 12.67 0.00 42.67 4.40
463 495 6.854892 GCGCGAGTAGACTAATGATTAAAGTA 59.145 38.462 12.10 0.00 0.00 2.24
500 532 3.438183 AGGTGTATTCCGTTGGTAGAGT 58.562 45.455 0.00 0.00 0.00 3.24
504 536 7.548780 GTGTTTATTAGGTGTATTCCGTTGGTA 59.451 37.037 0.00 0.00 0.00 3.25
505 537 6.372381 GTGTTTATTAGGTGTATTCCGTTGGT 59.628 38.462 0.00 0.00 0.00 3.67
506 538 6.455913 CGTGTTTATTAGGTGTATTCCGTTGG 60.456 42.308 0.00 0.00 0.00 3.77
508 540 5.063817 GCGTGTTTATTAGGTGTATTCCGTT 59.936 40.000 0.00 0.00 0.00 4.44
510 542 4.317558 CGCGTGTTTATTAGGTGTATTCCG 60.318 45.833 0.00 0.00 0.00 4.30
511 543 4.551410 GCGCGTGTTTATTAGGTGTATTCC 60.551 45.833 8.43 0.00 0.00 3.01
515 547 2.667481 GTGCGCGTGTTTATTAGGTGTA 59.333 45.455 8.43 0.00 0.00 2.90
516 548 1.461897 GTGCGCGTGTTTATTAGGTGT 59.538 47.619 8.43 0.00 0.00 4.16
517 549 1.461512 TGTGCGCGTGTTTATTAGGTG 59.538 47.619 8.43 0.00 0.00 4.00
518 550 1.461897 GTGTGCGCGTGTTTATTAGGT 59.538 47.619 8.43 0.00 0.00 3.08
519 551 1.461512 TGTGTGCGCGTGTTTATTAGG 59.538 47.619 8.43 0.00 0.00 2.69
520 552 2.865556 TGTGTGCGCGTGTTTATTAG 57.134 45.000 8.43 0.00 0.00 1.73
523 555 2.697431 AAATGTGTGCGCGTGTTTAT 57.303 40.000 8.43 0.00 0.00 1.40
533 574 0.576328 CCGTTGTGCAAAATGTGTGC 59.424 50.000 8.04 0.00 42.55 4.57
588 639 5.824624 ACATGCATTCTTTATCATTCCTCGT 59.175 36.000 0.00 0.00 0.00 4.18
623 674 3.528370 CGACTACAGGGAGGGCCG 61.528 72.222 0.00 0.00 33.83 6.13
627 678 2.034812 GTCAATAGCGACTACAGGGAGG 59.965 54.545 0.00 0.00 32.92 4.30
741 810 2.468831 GCGCATTTGTTTTTGTCTCCA 58.531 42.857 0.30 0.00 0.00 3.86
800 869 2.259439 CCCGTACGGATCTCCCTCG 61.259 68.421 35.41 11.42 37.50 4.63
801 870 2.562876 GCCCGTACGGATCTCCCTC 61.563 68.421 35.41 9.49 37.50 4.30
862 931 2.880890 GTGATGGAGTGAGTTGCTTGTT 59.119 45.455 0.00 0.00 0.00 2.83
866 939 2.636893 AGAAGTGATGGAGTGAGTTGCT 59.363 45.455 0.00 0.00 0.00 3.91
867 940 3.051081 AGAAGTGATGGAGTGAGTTGC 57.949 47.619 0.00 0.00 0.00 4.17
874 947 5.280215 CCTTGGAACTTAGAAGTGATGGAGT 60.280 44.000 0.00 0.00 39.66 3.85
934 1012 2.825836 GGCGACCAAGCTGGATGG 60.826 66.667 8.91 5.34 40.96 3.51
961 1039 1.280710 TGACAACTGACAAGTGGTGGT 59.719 47.619 0.00 0.00 40.92 4.16
962 1040 1.670811 GTGACAACTGACAAGTGGTGG 59.329 52.381 0.00 0.00 40.92 4.61
963 1041 1.327460 CGTGACAACTGACAAGTGGTG 59.673 52.381 0.00 0.00 40.92 4.17
987 1065 2.219674 GTGCTCCATTTGATCGATCGAC 59.780 50.000 22.06 14.65 0.00 4.20
1251 1332 3.966026 CTCCGCGGTGTCGAAGGTC 62.966 68.421 27.15 0.00 39.00 3.85
1469 1550 1.613630 TCCTCAACCTCCAGCTCCC 60.614 63.158 0.00 0.00 0.00 4.30
1474 1555 1.338200 CGAAACCTCCTCAACCTCCAG 60.338 57.143 0.00 0.00 0.00 3.86
1475 1556 0.685097 CGAAACCTCCTCAACCTCCA 59.315 55.000 0.00 0.00 0.00 3.86
1554 1641 1.218704 AGCCCAATGCCACCATATTCT 59.781 47.619 0.00 0.00 42.71 2.40
1575 1662 0.451628 CGTCGAGAAACGCGTAGTCA 60.452 55.000 14.46 0.00 42.26 3.41
1611 1698 4.117661 GACGCGAGCCCGAACTCT 62.118 66.667 15.93 0.00 38.22 3.24
1754 1841 4.670765 AGATCCAGCAAAAGAATCTGGTT 58.329 39.130 7.31 0.00 45.67 3.67
1784 1871 7.630242 AAGTTGTAACACTAGCATGCATATT 57.370 32.000 21.98 9.00 0.00 1.28
1834 1921 5.607119 TTGGTTCAATCTTTAGCGAAGAC 57.393 39.130 7.58 0.00 46.66 3.01
1849 1936 9.804758 AAGTAACAAATTAAACGAATTGGTTCA 57.195 25.926 6.29 0.00 45.02 3.18
1921 2008 3.326889 CTTGACCGCAACCGCATGG 62.327 63.158 0.00 0.00 42.84 3.66
1979 2066 0.606401 TCGCCTCAGCTGGAAAAAGG 60.606 55.000 15.13 13.84 36.60 3.11
2021 2112 2.446435 AGCTAATGCACCCATCGTTTT 58.554 42.857 0.00 0.00 42.74 2.43
2082 2174 1.903404 AAAAACCCTGCTGCTCGGG 60.903 57.895 20.96 20.96 46.26 5.14
2102 2194 3.834489 ACGCTACTACTAGCTACCAGA 57.166 47.619 4.25 0.00 43.07 3.86
2103 2195 4.575645 AGAAACGCTACTACTAGCTACCAG 59.424 45.833 0.00 0.00 43.07 4.00
2104 2196 4.334759 CAGAAACGCTACTACTAGCTACCA 59.665 45.833 0.00 0.00 43.07 3.25
2105 2197 4.789161 GCAGAAACGCTACTACTAGCTACC 60.789 50.000 0.00 0.00 43.07 3.18
2106 2198 4.201891 TGCAGAAACGCTACTACTAGCTAC 60.202 45.833 0.00 0.00 43.07 3.58
2107 2199 3.943381 TGCAGAAACGCTACTACTAGCTA 59.057 43.478 0.00 0.00 43.07 3.32
2108 2200 2.753452 TGCAGAAACGCTACTACTAGCT 59.247 45.455 0.00 0.00 43.07 3.32
2109 2201 2.853003 GTGCAGAAACGCTACTACTAGC 59.147 50.000 0.00 0.00 41.97 3.42
2110 2202 3.099362 CGTGCAGAAACGCTACTACTAG 58.901 50.000 0.00 0.00 36.65 2.57
2111 2203 3.127081 CGTGCAGAAACGCTACTACTA 57.873 47.619 0.00 0.00 36.65 1.82
2112 2204 1.978542 CGTGCAGAAACGCTACTACT 58.021 50.000 0.00 0.00 36.65 2.57
2156 2258 8.650143 AAAATACTCTGATTTACACCCAATGT 57.350 30.769 0.00 0.00 46.06 2.71
2208 2311 0.597118 GCTGGCAACACGCAAAATGA 60.597 50.000 0.00 0.00 46.17 2.57
2255 2403 2.135933 GATGTTGCCTCATACGCTACC 58.864 52.381 0.00 0.00 32.01 3.18
2267 2415 3.751175 TGCTGTTACTGTTAGATGTTGCC 59.249 43.478 0.00 0.00 0.00 4.52
2441 2597 2.338620 GCCCAGCAAAACGGGAAC 59.661 61.111 0.00 0.00 46.34 3.62
2442 2598 2.915137 GGCCCAGCAAAACGGGAA 60.915 61.111 0.00 0.00 46.34 3.97
2518 2723 2.009774 GACGGCTACAATCATGCAAGT 58.990 47.619 0.00 0.00 0.00 3.16
2531 2736 3.285484 AGACTAATTTCTCGGACGGCTA 58.715 45.455 0.00 0.00 0.00 3.93
2546 2752 8.347771 CACAACCGTATGCTATACTAAGACTAA 58.652 37.037 0.00 0.00 0.00 2.24
2579 2785 0.822164 ACCGGCCAGTGACATACTAC 59.178 55.000 0.00 0.00 37.60 2.73
2580 2786 0.821517 CACCGGCCAGTGACATACTA 59.178 55.000 14.31 0.00 40.34 1.82
2581 2787 1.192146 ACACCGGCCAGTGACATACT 61.192 55.000 25.94 0.00 40.34 2.12
2589 2795 2.144738 ACTAACCACACCGGCCAGT 61.145 57.895 0.00 0.00 39.03 4.00
2626 2832 2.148916 ACGTACGTCCCATATGCATG 57.851 50.000 16.72 0.00 0.00 4.06
2633 2839 3.113745 CGCCTACGTACGTCCCAT 58.886 61.111 26.53 1.72 33.53 4.00
2647 2853 2.875933 TGCTATATAGTTTTGGTGCGCC 59.124 45.455 10.11 10.11 0.00 6.53
2685 2891 0.599204 ATTCATACCTAACGGCGCCG 60.599 55.000 44.88 44.88 46.03 6.46
2686 2892 1.263217 CAATTCATACCTAACGGCGCC 59.737 52.381 19.07 19.07 0.00 6.53
2688 2894 2.210116 AGCAATTCATACCTAACGGCG 58.790 47.619 4.80 4.80 0.00 6.46
2691 2899 5.059343 CGATCGTAGCAATTCATACCTAACG 59.941 44.000 7.03 0.00 0.00 3.18
2700 2908 2.951457 TGGTCGATCGTAGCAATTCA 57.049 45.000 15.94 0.87 0.00 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.