Multiple sequence alignment - TraesCS2B01G433200
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS2B01G433200 | chr2B | 100.000 | 3206 | 0 | 0 | 1 | 3206 | 622655952 | 622659157 | 0.000000e+00 | 5921.0 |
1 | TraesCS2B01G433200 | chr2B | 97.222 | 180 | 5 | 0 | 2176 | 2355 | 622658307 | 622658486 | 4.020000e-79 | 305.0 |
2 | TraesCS2B01G433200 | chr2B | 74.728 | 368 | 84 | 8 | 170 | 531 | 47814766 | 47815130 | 4.280000e-34 | 156.0 |
3 | TraesCS2B01G433200 | chr2A | 90.519 | 2215 | 141 | 29 | 1 | 2176 | 671281128 | 671283312 | 0.000000e+00 | 2863.0 |
4 | TraesCS2B01G433200 | chr2D | 93.257 | 1572 | 53 | 21 | 619 | 2174 | 526344801 | 526346335 | 0.000000e+00 | 2266.0 |
5 | TraesCS2B01G433200 | chr2D | 86.897 | 580 | 63 | 5 | 21 | 588 | 526343867 | 526344445 | 3.490000e-179 | 638.0 |
6 | TraesCS2B01G433200 | chr2D | 77.126 | 341 | 69 | 8 | 214 | 547 | 186635368 | 186635706 | 4.220000e-44 | 189.0 |
7 | TraesCS2B01G433200 | chr2D | 79.661 | 236 | 36 | 9 | 392 | 625 | 639967166 | 639967391 | 3.310000e-35 | 159.0 |
8 | TraesCS2B01G433200 | chr2D | 76.489 | 319 | 57 | 12 | 318 | 624 | 525408540 | 525408228 | 1.190000e-34 | 158.0 |
9 | TraesCS2B01G433200 | chr2D | 74.933 | 375 | 74 | 20 | 14 | 379 | 596575666 | 596576029 | 1.540000e-33 | 154.0 |
10 | TraesCS2B01G433200 | chr2D | 72.578 | 547 | 107 | 34 | 20 | 546 | 513098222 | 513097699 | 4.310000e-29 | 139.0 |
11 | TraesCS2B01G433200 | chr2D | 77.714 | 175 | 29 | 10 | 19 | 189 | 555857516 | 555857684 | 7.320000e-17 | 99.0 |
12 | TraesCS2B01G433200 | chr7A | 98.825 | 851 | 10 | 0 | 2356 | 3206 | 635097548 | 635098398 | 0.000000e+00 | 1517.0 |
13 | TraesCS2B01G433200 | chr7A | 98.476 | 853 | 11 | 2 | 2355 | 3206 | 75213988 | 75213137 | 0.000000e+00 | 1502.0 |
14 | TraesCS2B01G433200 | chr7A | 98.239 | 852 | 15 | 0 | 2355 | 3206 | 518158911 | 518158060 | 0.000000e+00 | 1491.0 |
15 | TraesCS2B01G433200 | chr7A | 97.790 | 181 | 4 | 0 | 2175 | 2355 | 635097547 | 635097727 | 2.400000e-81 | 313.0 |
16 | TraesCS2B01G433200 | chr7A | 97.222 | 180 | 5 | 0 | 2176 | 2355 | 75213987 | 75213808 | 4.020000e-79 | 305.0 |
17 | TraesCS2B01G433200 | chr7A | 96.667 | 180 | 6 | 0 | 2176 | 2355 | 518158910 | 518158731 | 1.870000e-77 | 300.0 |
18 | TraesCS2B01G433200 | chr7A | 85.252 | 278 | 41 | 0 | 1688 | 1965 | 484525275 | 484525552 | 1.460000e-73 | 287.0 |
19 | TraesCS2B01G433200 | chr7A | 73.288 | 584 | 126 | 22 | 51 | 623 | 80568518 | 80569082 | 1.520000e-43 | 187.0 |
20 | TraesCS2B01G433200 | chr7A | 71.024 | 635 | 158 | 19 | 14 | 633 | 149029468 | 149028845 | 2.600000e-26 | 130.0 |
21 | TraesCS2B01G433200 | chr1B | 98.709 | 852 | 11 | 0 | 2355 | 3206 | 417413814 | 417414665 | 0.000000e+00 | 1513.0 |
22 | TraesCS2B01G433200 | chr1B | 71.603 | 574 | 137 | 22 | 23 | 578 | 588332171 | 588332736 | 2.010000e-27 | 134.0 |
23 | TraesCS2B01G433200 | chr1A | 98.595 | 854 | 12 | 0 | 2353 | 3206 | 86132524 | 86133377 | 0.000000e+00 | 1511.0 |
24 | TraesCS2B01G433200 | chr1A | 97.222 | 180 | 5 | 0 | 2176 | 2355 | 86132527 | 86132706 | 4.020000e-79 | 305.0 |
25 | TraesCS2B01G433200 | chr1A | 73.197 | 638 | 136 | 28 | 5 | 625 | 556085900 | 556086519 | 7.020000e-47 | 198.0 |
26 | TraesCS2B01G433200 | chr3B | 98.592 | 852 | 12 | 0 | 2355 | 3206 | 690455390 | 690454539 | 0.000000e+00 | 1507.0 |
27 | TraesCS2B01G433200 | chr3B | 96.703 | 182 | 6 | 0 | 2173 | 2354 | 51223297 | 51223478 | 1.450000e-78 | 303.0 |
28 | TraesCS2B01G433200 | chr3B | 80.435 | 276 | 46 | 6 | 1695 | 1966 | 826725618 | 826725889 | 1.510000e-48 | 204.0 |
29 | TraesCS2B01G433200 | chr6A | 98.590 | 851 | 12 | 0 | 2356 | 3206 | 513105384 | 513106234 | 0.000000e+00 | 1506.0 |
30 | TraesCS2B01G433200 | chr6A | 90.909 | 374 | 31 | 2 | 1647 | 2017 | 464538478 | 464538851 | 1.720000e-137 | 499.0 |
31 | TraesCS2B01G433200 | chr6A | 90.226 | 133 | 13 | 0 | 1094 | 1226 | 464537913 | 464538045 | 1.180000e-39 | 174.0 |
32 | TraesCS2B01G433200 | chr4A | 98.361 | 854 | 14 | 0 | 2353 | 3206 | 721824310 | 721825163 | 0.000000e+00 | 1500.0 |
33 | TraesCS2B01G433200 | chr4A | 97.222 | 180 | 5 | 0 | 2176 | 2355 | 721824313 | 721824492 | 4.020000e-79 | 305.0 |
34 | TraesCS2B01G433200 | chr6B | 98.355 | 851 | 14 | 0 | 2356 | 3206 | 516869819 | 516870669 | 0.000000e+00 | 1495.0 |
35 | TraesCS2B01G433200 | chr6B | 83.219 | 727 | 101 | 13 | 1297 | 2020 | 497216539 | 497215831 | 0.000000e+00 | 647.0 |
36 | TraesCS2B01G433200 | chr6B | 96.685 | 181 | 6 | 0 | 2175 | 2355 | 516869818 | 516869998 | 5.200000e-78 | 302.0 |
37 | TraesCS2B01G433200 | chr6D | 84.828 | 725 | 87 | 15 | 1297 | 2017 | 325755903 | 325756608 | 0.000000e+00 | 708.0 |
38 | TraesCS2B01G433200 | chr6D | 73.927 | 629 | 137 | 22 | 14 | 628 | 121158998 | 121158383 | 8.950000e-56 | 228.0 |
39 | TraesCS2B01G433200 | chr6D | 74.024 | 589 | 125 | 19 | 51 | 625 | 454064714 | 454064140 | 6.970000e-52 | 215.0 |
40 | TraesCS2B01G433200 | chr6D | 73.466 | 603 | 107 | 35 | 39 | 625 | 467150410 | 467149845 | 9.140000e-41 | 178.0 |
41 | TraesCS2B01G433200 | chr6D | 73.154 | 596 | 109 | 37 | 45 | 624 | 61601374 | 61600814 | 1.980000e-37 | 167.0 |
42 | TraesCS2B01G433200 | chr6D | 88.722 | 133 | 15 | 0 | 1094 | 1226 | 325755666 | 325755798 | 2.560000e-36 | 163.0 |
43 | TraesCS2B01G433200 | chr6D | 78.970 | 233 | 44 | 4 | 393 | 625 | 13074848 | 13075075 | 1.540000e-33 | 154.0 |
44 | TraesCS2B01G433200 | chr6D | 76.144 | 306 | 61 | 9 | 328 | 625 | 460272500 | 460272199 | 1.990000e-32 | 150.0 |
45 | TraesCS2B01G433200 | chr6D | 75.316 | 316 | 64 | 10 | 328 | 635 | 5735732 | 5735423 | 4.310000e-29 | 139.0 |
46 | TraesCS2B01G433200 | chrUn | 94.150 | 359 | 20 | 1 | 2175 | 2532 | 433954279 | 433953921 | 2.170000e-151 | 545.0 |
47 | TraesCS2B01G433200 | chrUn | 73.743 | 537 | 100 | 27 | 23 | 546 | 443024879 | 443025387 | 4.250000e-39 | 172.0 |
48 | TraesCS2B01G433200 | chrUn | 73.455 | 550 | 105 | 30 | 39 | 577 | 51394101 | 51393582 | 5.500000e-38 | 169.0 |
49 | TraesCS2B01G433200 | chrUn | 73.796 | 519 | 97 | 28 | 39 | 546 | 278334614 | 278335104 | 5.500000e-38 | 169.0 |
50 | TraesCS2B01G433200 | chrUn | 73.524 | 525 | 101 | 27 | 48 | 563 | 273858576 | 273858081 | 7.120000e-37 | 165.0 |
51 | TraesCS2B01G433200 | chrUn | 73.140 | 551 | 105 | 30 | 39 | 577 | 35558332 | 35558851 | 1.190000e-34 | 158.0 |
52 | TraesCS2B01G433200 | chrUn | 72.801 | 614 | 112 | 34 | 26 | 625 | 143907059 | 143907631 | 1.190000e-34 | 158.0 |
53 | TraesCS2B01G433200 | chrUn | 78.571 | 224 | 44 | 4 | 402 | 625 | 99838213 | 99837994 | 9.270000e-31 | 145.0 |
54 | TraesCS2B01G433200 | chrUn | 72.373 | 590 | 118 | 31 | 48 | 625 | 257412207 | 257411651 | 9.270000e-31 | 145.0 |
55 | TraesCS2B01G433200 | chrUn | 71.986 | 589 | 126 | 26 | 45 | 624 | 21234246 | 21234804 | 1.550000e-28 | 137.0 |
56 | TraesCS2B01G433200 | chrUn | 75.079 | 317 | 65 | 9 | 318 | 624 | 32936614 | 32936302 | 5.580000e-28 | 135.0 |
57 | TraesCS2B01G433200 | chrUn | 82.468 | 154 | 27 | 0 | 393 | 546 | 33277977 | 33277824 | 5.580000e-28 | 135.0 |
58 | TraesCS2B01G433200 | chrUn | 82.468 | 154 | 27 | 0 | 393 | 546 | 400230557 | 400230710 | 5.580000e-28 | 135.0 |
59 | TraesCS2B01G433200 | chrUn | 76.891 | 238 | 48 | 4 | 393 | 630 | 60959896 | 60959666 | 9.340000e-26 | 128.0 |
60 | TraesCS2B01G433200 | chr7D | 85.507 | 276 | 40 | 0 | 1690 | 1965 | 433876570 | 433876845 | 4.050000e-74 | 289.0 |
61 | TraesCS2B01G433200 | chr7D | 73.885 | 628 | 132 | 20 | 14 | 625 | 475154786 | 475155397 | 4.160000e-54 | 222.0 |
62 | TraesCS2B01G433200 | chr7D | 76.708 | 322 | 57 | 11 | 318 | 628 | 7568125 | 7568439 | 2.560000e-36 | 163.0 |
63 | TraesCS2B01G433200 | chr7D | 73.797 | 374 | 80 | 16 | 214 | 577 | 43881981 | 43882346 | 7.220000e-27 | 132.0 |
64 | TraesCS2B01G433200 | chr7B | 84.483 | 290 | 45 | 0 | 1690 | 1979 | 451289912 | 451290201 | 1.460000e-73 | 287.0 |
65 | TraesCS2B01G433200 | chr7B | 73.565 | 575 | 110 | 28 | 62 | 625 | 721070528 | 721071071 | 7.060000e-42 | 182.0 |
66 | TraesCS2B01G433200 | chr1D | 75.258 | 582 | 95 | 32 | 20 | 585 | 431763614 | 431764162 | 6.920000e-57 | 231.0 |
67 | TraesCS2B01G433200 | chr1D | 74.320 | 588 | 124 | 17 | 51 | 625 | 466406552 | 466407125 | 1.160000e-54 | 224.0 |
68 | TraesCS2B01G433200 | chr1D | 73.301 | 618 | 137 | 25 | 21 | 624 | 418405418 | 418404815 | 5.420000e-48 | 202.0 |
69 | TraesCS2B01G433200 | chr1D | 73.473 | 573 | 116 | 24 | 63 | 628 | 491722015 | 491721472 | 1.960000e-42 | 183.0 |
70 | TraesCS2B01G433200 | chr3D | 74.450 | 591 | 118 | 27 | 51 | 625 | 300618140 | 300618713 | 1.160000e-54 | 224.0 |
71 | TraesCS2B01G433200 | chr3D | 74.204 | 597 | 116 | 28 | 45 | 624 | 49458665 | 49459240 | 6.970000e-52 | 215.0 |
72 | TraesCS2B01G433200 | chr3D | 80.444 | 225 | 41 | 3 | 402 | 626 | 526190285 | 526190506 | 5.500000e-38 | 169.0 |
73 | TraesCS2B01G433200 | chr3D | 79.574 | 235 | 39 | 7 | 393 | 625 | 24641228 | 24641455 | 3.310000e-35 | 159.0 |
74 | TraesCS2B01G433200 | chr3D | 72.488 | 418 | 88 | 23 | 20 | 422 | 590232273 | 590232678 | 3.380000e-20 | 110.0 |
75 | TraesCS2B01G433200 | chr3D | 72.727 | 187 | 46 | 5 | 74 | 256 | 577778325 | 577778510 | 1.240000e-04 | 58.4 |
76 | TraesCS2B01G433200 | chr4D | 73.642 | 626 | 125 | 29 | 20 | 624 | 19338410 | 19339016 | 4.190000e-49 | 206.0 |
77 | TraesCS2B01G433200 | chr4D | 74.245 | 563 | 97 | 33 | 39 | 585 | 69656501 | 69657031 | 3.260000e-45 | 193.0 |
78 | TraesCS2B01G433200 | chr4D | 72.884 | 579 | 116 | 32 | 44 | 612 | 319083612 | 319084159 | 9.200000e-36 | 161.0 |
79 | TraesCS2B01G433200 | chr4D | 72.712 | 590 | 121 | 31 | 39 | 622 | 450150602 | 450150047 | 9.200000e-36 | 161.0 |
80 | TraesCS2B01G433200 | chr3A | 74.732 | 467 | 92 | 17 | 172 | 624 | 644817072 | 644817526 | 5.460000e-43 | 185.0 |
81 | TraesCS2B01G433200 | chr3A | 77.987 | 159 | 34 | 1 | 229 | 386 | 121316019 | 121315861 | 7.320000e-17 | 99.0 |
82 | TraesCS2B01G433200 | chr5A | 73.230 | 579 | 117 | 26 | 66 | 628 | 547713820 | 547713264 | 3.290000e-40 | 176.0 |
83 | TraesCS2B01G433200 | chr5A | 73.333 | 510 | 103 | 26 | 44 | 531 | 443586483 | 443586981 | 1.190000e-34 | 158.0 |
84 | TraesCS2B01G433200 | chr5A | 71.511 | 523 | 109 | 26 | 105 | 613 | 684708401 | 684708897 | 1.570000e-18 | 104.0 |
85 | TraesCS2B01G433200 | chr5D | 77.303 | 304 | 51 | 10 | 332 | 625 | 539226255 | 539225960 | 2.560000e-36 | 163.0 |
86 | TraesCS2B01G433200 | chr5D | 71.927 | 545 | 125 | 23 | 20 | 546 | 476718522 | 476717988 | 2.010000e-27 | 134.0 |
87 | TraesCS2B01G433200 | chr4B | 76.871 | 294 | 58 | 10 | 284 | 575 | 52403915 | 52404200 | 1.190000e-34 | 158.0 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS2B01G433200 | chr2B | 622655952 | 622659157 | 3205 | False | 3113.0 | 5921 | 98.6110 | 1 | 3206 | 2 | chr2B.!!$F2 | 3205 |
1 | TraesCS2B01G433200 | chr2A | 671281128 | 671283312 | 2184 | False | 2863.0 | 2863 | 90.5190 | 1 | 2176 | 1 | chr2A.!!$F1 | 2175 |
2 | TraesCS2B01G433200 | chr2D | 526343867 | 526346335 | 2468 | False | 1452.0 | 2266 | 90.0770 | 21 | 2174 | 2 | chr2D.!!$F5 | 2153 |
3 | TraesCS2B01G433200 | chr7A | 635097547 | 635098398 | 851 | False | 915.0 | 1517 | 98.3075 | 2175 | 3206 | 2 | chr7A.!!$F3 | 1031 |
4 | TraesCS2B01G433200 | chr7A | 75213137 | 75213988 | 851 | True | 903.5 | 1502 | 97.8490 | 2176 | 3206 | 2 | chr7A.!!$R2 | 1030 |
5 | TraesCS2B01G433200 | chr7A | 518158060 | 518158911 | 851 | True | 895.5 | 1491 | 97.4530 | 2176 | 3206 | 2 | chr7A.!!$R3 | 1030 |
6 | TraesCS2B01G433200 | chr1B | 417413814 | 417414665 | 851 | False | 1513.0 | 1513 | 98.7090 | 2355 | 3206 | 1 | chr1B.!!$F1 | 851 |
7 | TraesCS2B01G433200 | chr1A | 86132524 | 86133377 | 853 | False | 908.0 | 1511 | 97.9085 | 2176 | 3206 | 2 | chr1A.!!$F2 | 1030 |
8 | TraesCS2B01G433200 | chr3B | 690454539 | 690455390 | 851 | True | 1507.0 | 1507 | 98.5920 | 2355 | 3206 | 1 | chr3B.!!$R1 | 851 |
9 | TraesCS2B01G433200 | chr6A | 513105384 | 513106234 | 850 | False | 1506.0 | 1506 | 98.5900 | 2356 | 3206 | 1 | chr6A.!!$F1 | 850 |
10 | TraesCS2B01G433200 | chr6A | 464537913 | 464538851 | 938 | False | 336.5 | 499 | 90.5675 | 1094 | 2017 | 2 | chr6A.!!$F2 | 923 |
11 | TraesCS2B01G433200 | chr4A | 721824310 | 721825163 | 853 | False | 902.5 | 1500 | 97.7915 | 2176 | 3206 | 2 | chr4A.!!$F1 | 1030 |
12 | TraesCS2B01G433200 | chr6B | 516869818 | 516870669 | 851 | False | 898.5 | 1495 | 97.5200 | 2175 | 3206 | 2 | chr6B.!!$F1 | 1031 |
13 | TraesCS2B01G433200 | chr6B | 497215831 | 497216539 | 708 | True | 647.0 | 647 | 83.2190 | 1297 | 2020 | 1 | chr6B.!!$R1 | 723 |
14 | TraesCS2B01G433200 | chr6D | 325755666 | 325756608 | 942 | False | 435.5 | 708 | 86.7750 | 1094 | 2017 | 2 | chr6D.!!$F2 | 923 |
15 | TraesCS2B01G433200 | chr6D | 121158383 | 121158998 | 615 | True | 228.0 | 228 | 73.9270 | 14 | 628 | 1 | chr6D.!!$R3 | 614 |
16 | TraesCS2B01G433200 | chr6D | 454064140 | 454064714 | 574 | True | 215.0 | 215 | 74.0240 | 51 | 625 | 1 | chr6D.!!$R4 | 574 |
17 | TraesCS2B01G433200 | chr7D | 475154786 | 475155397 | 611 | False | 222.0 | 222 | 73.8850 | 14 | 625 | 1 | chr7D.!!$F4 | 611 |
18 | TraesCS2B01G433200 | chr1D | 431763614 | 431764162 | 548 | False | 231.0 | 231 | 75.2580 | 20 | 585 | 1 | chr1D.!!$F1 | 565 |
19 | TraesCS2B01G433200 | chr1D | 466406552 | 466407125 | 573 | False | 224.0 | 224 | 74.3200 | 51 | 625 | 1 | chr1D.!!$F2 | 574 |
20 | TraesCS2B01G433200 | chr1D | 418404815 | 418405418 | 603 | True | 202.0 | 202 | 73.3010 | 21 | 624 | 1 | chr1D.!!$R1 | 603 |
21 | TraesCS2B01G433200 | chr3D | 300618140 | 300618713 | 573 | False | 224.0 | 224 | 74.4500 | 51 | 625 | 1 | chr3D.!!$F3 | 574 |
22 | TraesCS2B01G433200 | chr3D | 49458665 | 49459240 | 575 | False | 215.0 | 215 | 74.2040 | 45 | 624 | 1 | chr3D.!!$F2 | 579 |
23 | TraesCS2B01G433200 | chr4D | 19338410 | 19339016 | 606 | False | 206.0 | 206 | 73.6420 | 20 | 624 | 1 | chr4D.!!$F1 | 604 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
500 | 519 | 0.168348 | GACACGTCTTCAGCTCGCTA | 59.832 | 55.0 | 0.00 | 0.0 | 0.0 | 4.26 | F |
1544 | 1965 | 0.179020 | CCTCCTGCAGTTTGTCACCA | 60.179 | 55.0 | 13.81 | 0.0 | 0.0 | 4.17 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
2247 | 2698 | 0.180171 | TGGGACTAATCATGCGGTGG | 59.820 | 55.000 | 0.00 | 0.0 | 0.0 | 4.61 | R |
2494 | 2945 | 7.023575 | GTCAGTCAATGTAAATTGCTAAGTGG | 58.976 | 38.462 | 0.22 | 0.0 | 0.0 | 4.00 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
17 | 18 | 4.572571 | GTTGTCACACCCCCGCCA | 62.573 | 66.667 | 0.00 | 0.00 | 0.00 | 5.69 |
18 | 19 | 4.263572 | TTGTCACACCCCCGCCAG | 62.264 | 66.667 | 0.00 | 0.00 | 0.00 | 4.85 |
37 | 38 | 1.142748 | CGATCTGCCTCGCCTCTTT | 59.857 | 57.895 | 0.00 | 0.00 | 0.00 | 2.52 |
72 | 73 | 2.204291 | AGGGCTGGTGGATCCCAA | 60.204 | 61.111 | 9.90 | 0.00 | 42.52 | 4.12 |
103 | 105 | 0.179034 | GGGAGGGCTCTTGCTATGTG | 60.179 | 60.000 | 0.00 | 0.00 | 39.59 | 3.21 |
261 | 268 | 0.386985 | GAGGTGTGTCTCCGACGAAC | 60.387 | 60.000 | 0.00 | 0.00 | 34.95 | 3.95 |
265 | 272 | 0.250858 | TGTGTCTCCGACGAACCCTA | 60.251 | 55.000 | 0.00 | 0.00 | 34.95 | 3.53 |
449 | 467 | 9.856488 | GTGTCTGTCTACTACAATAAGATTTGA | 57.144 | 33.333 | 0.00 | 0.00 | 37.74 | 2.69 |
482 | 501 | 2.276116 | GGAGGGGCGATGATAGCGA | 61.276 | 63.158 | 0.00 | 0.00 | 35.00 | 4.93 |
492 | 511 | 2.538939 | CGATGATAGCGACACGTCTTCA | 60.539 | 50.000 | 0.00 | 0.00 | 0.00 | 3.02 |
500 | 519 | 0.168348 | GACACGTCTTCAGCTCGCTA | 59.832 | 55.000 | 0.00 | 0.00 | 0.00 | 4.26 |
566 | 590 | 8.773404 | TGTAAGGTTTCTCTTACTTCTATTGC | 57.227 | 34.615 | 13.60 | 0.00 | 45.51 | 3.56 |
578 | 602 | 8.035394 | TCTTACTTCTATTGCTCTTTGTACTGG | 58.965 | 37.037 | 0.00 | 0.00 | 0.00 | 4.00 |
596 | 620 | 4.142790 | ACTGGGATGATGCTTGATGAATC | 58.857 | 43.478 | 0.00 | 0.00 | 0.00 | 2.52 |
606 | 630 | 6.915843 | TGATGCTTGATGAATCGATCAAAATG | 59.084 | 34.615 | 0.00 | 0.00 | 40.89 | 2.32 |
614 | 638 | 8.306038 | TGATGAATCGATCAAAATGTTTTCCTT | 58.694 | 29.630 | 0.00 | 0.00 | 42.54 | 3.36 |
615 | 639 | 7.872163 | TGAATCGATCAAAATGTTTTCCTTG | 57.128 | 32.000 | 0.00 | 0.00 | 34.30 | 3.61 |
616 | 640 | 6.867816 | TGAATCGATCAAAATGTTTTCCTTGG | 59.132 | 34.615 | 0.00 | 0.00 | 34.30 | 3.61 |
678 | 1027 | 8.007405 | TGATCTCACCTAATTTCAATAGACGA | 57.993 | 34.615 | 0.00 | 0.00 | 0.00 | 4.20 |
790 | 1140 | 5.931724 | CACTGTCTTGTGGTGTATCATAACA | 59.068 | 40.000 | 0.00 | 0.00 | 34.56 | 2.41 |
949 | 1317 | 4.073052 | TGCGTGTTTTAGGCAGGG | 57.927 | 55.556 | 0.00 | 0.00 | 44.54 | 4.45 |
950 | 1318 | 2.265182 | TGCGTGTTTTAGGCAGGGC | 61.265 | 57.895 | 0.00 | 0.00 | 44.54 | 5.19 |
951 | 1319 | 2.265182 | GCGTGTTTTAGGCAGGGCA | 61.265 | 57.895 | 0.00 | 0.00 | 39.88 | 5.36 |
979 | 1347 | 1.676916 | CCATCAGTGCCATCTCACGTT | 60.677 | 52.381 | 0.00 | 0.00 | 41.61 | 3.99 |
987 | 1355 | 6.092122 | TCAGTGCCATCTCACGTTTATAAAAG | 59.908 | 38.462 | 9.27 | 9.27 | 41.61 | 2.27 |
999 | 1367 | 5.235831 | ACGTTTATAAAAGGAGCGCCTAATC | 59.764 | 40.000 | 10.31 | 0.00 | 46.28 | 1.75 |
1010 | 1378 | 1.123928 | CGCCTAATCAGAGGGAAGGT | 58.876 | 55.000 | 0.00 | 0.00 | 37.06 | 3.50 |
1070 | 1438 | 2.926838 | CTCTTTAGCTTGAAGACCTCGC | 59.073 | 50.000 | 0.00 | 0.00 | 0.00 | 5.03 |
1088 | 1459 | 2.551032 | TCGCTGAGAAAACAGTCGAGTA | 59.449 | 45.455 | 0.00 | 0.00 | 39.41 | 2.59 |
1226 | 1597 | 1.369625 | GCCATTTCCTACGGTGAGTG | 58.630 | 55.000 | 0.00 | 0.00 | 0.00 | 3.51 |
1249 | 1620 | 0.532417 | CCTGCTAGCTGGTGATCTGC | 60.532 | 60.000 | 27.73 | 0.00 | 40.14 | 4.26 |
1277 | 1652 | 1.195115 | TCTGGCTTACTCCATCGCTT | 58.805 | 50.000 | 0.00 | 0.00 | 35.22 | 4.68 |
1288 | 1663 | 1.209504 | TCCATCGCTTACCAAAGAGGG | 59.790 | 52.381 | 0.00 | 0.00 | 43.89 | 4.30 |
1309 | 1730 | 1.419762 | TCTTCTTGTGCAGGGCAACTA | 59.580 | 47.619 | 0.00 | 0.00 | 41.47 | 2.24 |
1544 | 1965 | 0.179020 | CCTCCTGCAGTTTGTCACCA | 60.179 | 55.000 | 13.81 | 0.00 | 0.00 | 4.17 |
1576 | 1999 | 2.158871 | TGGCGTTCAACTCAGTACCTTT | 60.159 | 45.455 | 0.00 | 0.00 | 0.00 | 3.11 |
1602 | 2026 | 4.351192 | GAACACGTCTGCAACAAATCTTT | 58.649 | 39.130 | 0.00 | 0.00 | 0.00 | 2.52 |
1643 | 2078 | 6.374565 | AGTACTTACTGGCTTCTATGTACG | 57.625 | 41.667 | 0.00 | 0.00 | 34.72 | 3.67 |
1712 | 2150 | 0.384309 | GCGTGGTGATGGAGATCGTA | 59.616 | 55.000 | 0.00 | 0.00 | 0.00 | 3.43 |
1931 | 2369 | 3.315949 | GTGTACTGGGTCGGGCCA | 61.316 | 66.667 | 4.39 | 0.00 | 39.65 | 5.36 |
2046 | 2484 | 1.069358 | GGATCCGAACCTAGCTTCCTG | 59.931 | 57.143 | 0.00 | 0.00 | 0.00 | 3.86 |
2047 | 2485 | 1.069358 | GATCCGAACCTAGCTTCCTGG | 59.931 | 57.143 | 0.00 | 0.00 | 0.00 | 4.45 |
2048 | 2486 | 0.976073 | TCCGAACCTAGCTTCCTGGG | 60.976 | 60.000 | 0.00 | 0.00 | 44.74 | 4.45 |
2049 | 2487 | 1.153349 | CGAACCTAGCTTCCTGGGC | 60.153 | 63.158 | 0.00 | 0.00 | 43.12 | 5.36 |
2050 | 2488 | 1.617947 | CGAACCTAGCTTCCTGGGCT | 61.618 | 60.000 | 0.00 | 2.98 | 43.12 | 5.19 |
2179 | 2630 | 5.642063 | TCTGCGTTTTTCCGAAATCTTCTAT | 59.358 | 36.000 | 0.00 | 0.00 | 0.00 | 1.98 |
2180 | 2631 | 6.814644 | TCTGCGTTTTTCCGAAATCTTCTATA | 59.185 | 34.615 | 0.00 | 0.00 | 0.00 | 1.31 |
2181 | 2632 | 6.768078 | TGCGTTTTTCCGAAATCTTCTATAC | 58.232 | 36.000 | 0.00 | 0.00 | 0.00 | 1.47 |
2182 | 2633 | 6.592607 | TGCGTTTTTCCGAAATCTTCTATACT | 59.407 | 34.615 | 0.00 | 0.00 | 0.00 | 2.12 |
2183 | 2634 | 7.760794 | TGCGTTTTTCCGAAATCTTCTATACTA | 59.239 | 33.333 | 0.00 | 0.00 | 0.00 | 1.82 |
2184 | 2635 | 8.054819 | GCGTTTTTCCGAAATCTTCTATACTAC | 58.945 | 37.037 | 0.00 | 0.00 | 0.00 | 2.73 |
2185 | 2636 | 9.298774 | CGTTTTTCCGAAATCTTCTATACTACT | 57.701 | 33.333 | 0.00 | 0.00 | 0.00 | 2.57 |
2232 | 2683 | 5.968528 | TTTAAGTGCATCCCATAAAACGT | 57.031 | 34.783 | 0.00 | 0.00 | 0.00 | 3.99 |
2233 | 2684 | 7.450124 | TTTTAAGTGCATCCCATAAAACGTA | 57.550 | 32.000 | 0.00 | 0.00 | 0.00 | 3.57 |
2234 | 2685 | 4.957759 | AAGTGCATCCCATAAAACGTAC | 57.042 | 40.909 | 0.00 | 0.00 | 0.00 | 3.67 |
2235 | 2686 | 3.945346 | AGTGCATCCCATAAAACGTACA | 58.055 | 40.909 | 0.00 | 0.00 | 0.00 | 2.90 |
2236 | 2687 | 3.687698 | AGTGCATCCCATAAAACGTACAC | 59.312 | 43.478 | 0.00 | 0.00 | 0.00 | 2.90 |
2237 | 2688 | 2.673862 | TGCATCCCATAAAACGTACACG | 59.326 | 45.455 | 0.00 | 0.00 | 46.33 | 4.49 |
2238 | 2689 | 2.031191 | GCATCCCATAAAACGTACACGG | 59.969 | 50.000 | 6.72 | 0.00 | 44.95 | 4.94 |
2239 | 2690 | 3.523547 | CATCCCATAAAACGTACACGGA | 58.476 | 45.455 | 6.72 | 0.00 | 44.95 | 4.69 |
2240 | 2691 | 3.891422 | TCCCATAAAACGTACACGGAT | 57.109 | 42.857 | 6.72 | 0.00 | 44.95 | 4.18 |
2241 | 2692 | 4.998671 | TCCCATAAAACGTACACGGATA | 57.001 | 40.909 | 6.72 | 0.00 | 44.95 | 2.59 |
2242 | 2693 | 4.681744 | TCCCATAAAACGTACACGGATAC | 58.318 | 43.478 | 6.72 | 0.00 | 44.95 | 2.24 |
2243 | 2694 | 4.159321 | TCCCATAAAACGTACACGGATACA | 59.841 | 41.667 | 6.72 | 0.00 | 44.95 | 2.29 |
2244 | 2695 | 5.051816 | CCCATAAAACGTACACGGATACAT | 58.948 | 41.667 | 6.72 | 0.00 | 44.95 | 2.29 |
2245 | 2696 | 5.524646 | CCCATAAAACGTACACGGATACATT | 59.475 | 40.000 | 6.72 | 0.00 | 44.95 | 2.71 |
2246 | 2697 | 6.700960 | CCCATAAAACGTACACGGATACATTA | 59.299 | 38.462 | 6.72 | 0.00 | 44.95 | 1.90 |
2247 | 2698 | 7.306749 | CCCATAAAACGTACACGGATACATTAC | 60.307 | 40.741 | 6.72 | 0.00 | 44.95 | 1.89 |
2248 | 2699 | 7.306749 | CCATAAAACGTACACGGATACATTACC | 60.307 | 40.741 | 6.72 | 0.00 | 44.95 | 2.85 |
2249 | 2700 | 4.717233 | AACGTACACGGATACATTACCA | 57.283 | 40.909 | 6.72 | 0.00 | 44.95 | 3.25 |
2250 | 2701 | 4.032703 | ACGTACACGGATACATTACCAC | 57.967 | 45.455 | 6.72 | 0.00 | 44.95 | 4.16 |
2251 | 2702 | 3.181487 | ACGTACACGGATACATTACCACC | 60.181 | 47.826 | 6.72 | 0.00 | 44.95 | 4.61 |
2253 | 2704 | 1.214367 | CACGGATACATTACCACCGC | 58.786 | 55.000 | 0.00 | 0.00 | 46.18 | 5.68 |
2254 | 2705 | 0.825410 | ACGGATACATTACCACCGCA | 59.175 | 50.000 | 0.00 | 0.00 | 46.18 | 5.69 |
2255 | 2706 | 1.414919 | ACGGATACATTACCACCGCAT | 59.585 | 47.619 | 0.00 | 0.00 | 46.18 | 4.73 |
2256 | 2707 | 1.798223 | CGGATACATTACCACCGCATG | 59.202 | 52.381 | 0.00 | 0.00 | 37.32 | 4.06 |
2257 | 2708 | 2.547007 | CGGATACATTACCACCGCATGA | 60.547 | 50.000 | 0.00 | 0.00 | 37.32 | 3.07 |
2258 | 2709 | 3.674997 | GGATACATTACCACCGCATGAT | 58.325 | 45.455 | 0.00 | 0.00 | 0.00 | 2.45 |
2259 | 2710 | 4.072131 | GGATACATTACCACCGCATGATT | 58.928 | 43.478 | 0.00 | 0.00 | 0.00 | 2.57 |
2260 | 2711 | 5.242434 | GGATACATTACCACCGCATGATTA | 58.758 | 41.667 | 0.00 | 0.00 | 0.00 | 1.75 |
2261 | 2712 | 5.351465 | GGATACATTACCACCGCATGATTAG | 59.649 | 44.000 | 0.00 | 0.00 | 0.00 | 1.73 |
2262 | 2713 | 4.150897 | ACATTACCACCGCATGATTAGT | 57.849 | 40.909 | 0.00 | 0.00 | 0.00 | 2.24 |
2263 | 2714 | 4.127171 | ACATTACCACCGCATGATTAGTC | 58.873 | 43.478 | 0.00 | 0.00 | 0.00 | 2.59 |
2264 | 2715 | 2.902705 | TACCACCGCATGATTAGTCC | 57.097 | 50.000 | 0.00 | 0.00 | 0.00 | 3.85 |
2265 | 2716 | 0.180406 | ACCACCGCATGATTAGTCCC | 59.820 | 55.000 | 0.00 | 0.00 | 0.00 | 4.46 |
2266 | 2717 | 0.180171 | CCACCGCATGATTAGTCCCA | 59.820 | 55.000 | 0.00 | 0.00 | 0.00 | 4.37 |
2267 | 2718 | 1.299541 | CACCGCATGATTAGTCCCAC | 58.700 | 55.000 | 0.00 | 0.00 | 0.00 | 4.61 |
2268 | 2719 | 1.134401 | CACCGCATGATTAGTCCCACT | 60.134 | 52.381 | 0.00 | 0.00 | 0.00 | 4.00 |
2269 | 2720 | 2.102420 | CACCGCATGATTAGTCCCACTA | 59.898 | 50.000 | 0.00 | 0.00 | 0.00 | 2.74 |
2270 | 2721 | 2.769663 | ACCGCATGATTAGTCCCACTAA | 59.230 | 45.455 | 0.00 | 0.00 | 43.95 | 2.24 |
2271 | 2722 | 3.199071 | ACCGCATGATTAGTCCCACTAAA | 59.801 | 43.478 | 0.00 | 0.00 | 43.16 | 1.85 |
2272 | 2723 | 3.560068 | CCGCATGATTAGTCCCACTAAAC | 59.440 | 47.826 | 0.00 | 0.00 | 43.16 | 2.01 |
2273 | 2724 | 4.442706 | CGCATGATTAGTCCCACTAAACT | 58.557 | 43.478 | 0.00 | 0.00 | 43.16 | 2.66 |
2274 | 2725 | 4.876107 | CGCATGATTAGTCCCACTAAACTT | 59.124 | 41.667 | 0.00 | 0.00 | 43.16 | 2.66 |
2275 | 2726 | 6.046593 | CGCATGATTAGTCCCACTAAACTTA | 58.953 | 40.000 | 0.00 | 0.00 | 43.16 | 2.24 |
2276 | 2727 | 6.537301 | CGCATGATTAGTCCCACTAAACTTAA | 59.463 | 38.462 | 0.00 | 0.00 | 43.16 | 1.85 |
2277 | 2728 | 7.226720 | CGCATGATTAGTCCCACTAAACTTAAT | 59.773 | 37.037 | 0.00 | 0.00 | 43.16 | 1.40 |
2278 | 2729 | 8.560374 | GCATGATTAGTCCCACTAAACTTAATC | 58.440 | 37.037 | 0.00 | 0.00 | 43.16 | 1.75 |
2279 | 2730 | 9.838339 | CATGATTAGTCCCACTAAACTTAATCT | 57.162 | 33.333 | 0.37 | 0.00 | 43.16 | 2.40 |
2283 | 2734 | 9.813446 | ATTAGTCCCACTAAACTTAATCTAACG | 57.187 | 33.333 | 0.37 | 0.00 | 43.16 | 3.18 |
2284 | 2735 | 6.637657 | AGTCCCACTAAACTTAATCTAACGG | 58.362 | 40.000 | 0.00 | 0.00 | 0.00 | 4.44 |
2285 | 2736 | 5.292834 | GTCCCACTAAACTTAATCTAACGGC | 59.707 | 44.000 | 0.00 | 0.00 | 0.00 | 5.68 |
2286 | 2737 | 5.188359 | TCCCACTAAACTTAATCTAACGGCT | 59.812 | 40.000 | 0.00 | 0.00 | 0.00 | 5.52 |
2287 | 2738 | 6.380846 | TCCCACTAAACTTAATCTAACGGCTA | 59.619 | 38.462 | 0.00 | 0.00 | 0.00 | 3.93 |
2288 | 2739 | 6.700520 | CCCACTAAACTTAATCTAACGGCTAG | 59.299 | 42.308 | 0.00 | 0.00 | 0.00 | 3.42 |
2289 | 2740 | 6.200475 | CCACTAAACTTAATCTAACGGCTAGC | 59.800 | 42.308 | 6.04 | 6.04 | 0.00 | 3.42 |
2290 | 2741 | 6.200475 | CACTAAACTTAATCTAACGGCTAGCC | 59.800 | 42.308 | 24.75 | 24.75 | 0.00 | 3.93 |
2291 | 2742 | 5.354842 | AAACTTAATCTAACGGCTAGCCT | 57.645 | 39.130 | 30.55 | 16.25 | 0.00 | 4.58 |
2292 | 2743 | 5.354842 | AACTTAATCTAACGGCTAGCCTT | 57.645 | 39.130 | 30.55 | 23.63 | 0.00 | 4.35 |
2293 | 2744 | 6.475596 | AACTTAATCTAACGGCTAGCCTTA | 57.524 | 37.500 | 30.55 | 23.50 | 0.00 | 2.69 |
2294 | 2745 | 6.475596 | ACTTAATCTAACGGCTAGCCTTAA | 57.524 | 37.500 | 30.55 | 23.07 | 0.00 | 1.85 |
2295 | 2746 | 6.279123 | ACTTAATCTAACGGCTAGCCTTAAC | 58.721 | 40.000 | 30.55 | 4.97 | 0.00 | 2.01 |
2296 | 2747 | 3.747854 | ATCTAACGGCTAGCCTTAACC | 57.252 | 47.619 | 30.55 | 4.19 | 0.00 | 2.85 |
2297 | 2748 | 2.743553 | TCTAACGGCTAGCCTTAACCT | 58.256 | 47.619 | 30.55 | 9.72 | 0.00 | 3.50 |
2298 | 2749 | 3.902218 | TCTAACGGCTAGCCTTAACCTA | 58.098 | 45.455 | 30.55 | 10.37 | 0.00 | 3.08 |
2299 | 2750 | 4.280819 | TCTAACGGCTAGCCTTAACCTAA | 58.719 | 43.478 | 30.55 | 6.51 | 0.00 | 2.69 |
2300 | 2751 | 4.897670 | TCTAACGGCTAGCCTTAACCTAAT | 59.102 | 41.667 | 30.55 | 7.85 | 0.00 | 1.73 |
2301 | 2752 | 6.070656 | TCTAACGGCTAGCCTTAACCTAATA | 58.929 | 40.000 | 30.55 | 8.60 | 0.00 | 0.98 |
2302 | 2753 | 5.820404 | AACGGCTAGCCTTAACCTAATAT | 57.180 | 39.130 | 30.55 | 0.55 | 0.00 | 1.28 |
2303 | 2754 | 5.148651 | ACGGCTAGCCTTAACCTAATATG | 57.851 | 43.478 | 30.55 | 12.97 | 0.00 | 1.78 |
2304 | 2755 | 4.591924 | ACGGCTAGCCTTAACCTAATATGT | 59.408 | 41.667 | 30.55 | 13.62 | 0.00 | 2.29 |
2305 | 2756 | 5.071384 | ACGGCTAGCCTTAACCTAATATGTT | 59.929 | 40.000 | 30.55 | 0.00 | 0.00 | 2.71 |
2306 | 2757 | 5.638234 | CGGCTAGCCTTAACCTAATATGTTC | 59.362 | 44.000 | 30.55 | 0.00 | 0.00 | 3.18 |
2307 | 2758 | 6.518537 | CGGCTAGCCTTAACCTAATATGTTCT | 60.519 | 42.308 | 30.55 | 0.00 | 0.00 | 3.01 |
2308 | 2759 | 6.874664 | GGCTAGCCTTAACCTAATATGTTCTC | 59.125 | 42.308 | 27.17 | 0.00 | 0.00 | 2.87 |
2309 | 2760 | 7.256368 | GGCTAGCCTTAACCTAATATGTTCTCT | 60.256 | 40.741 | 27.17 | 0.00 | 0.00 | 3.10 |
2310 | 2761 | 7.600752 | GCTAGCCTTAACCTAATATGTTCTCTG | 59.399 | 40.741 | 2.29 | 0.00 | 0.00 | 3.35 |
2311 | 2762 | 7.439108 | AGCCTTAACCTAATATGTTCTCTGT | 57.561 | 36.000 | 0.00 | 0.00 | 0.00 | 3.41 |
2312 | 2763 | 7.275920 | AGCCTTAACCTAATATGTTCTCTGTG | 58.724 | 38.462 | 0.00 | 0.00 | 0.00 | 3.66 |
2313 | 2764 | 7.048512 | GCCTTAACCTAATATGTTCTCTGTGT | 58.951 | 38.462 | 0.00 | 0.00 | 0.00 | 3.72 |
2314 | 2765 | 7.011482 | GCCTTAACCTAATATGTTCTCTGTGTG | 59.989 | 40.741 | 0.00 | 0.00 | 0.00 | 3.82 |
2315 | 2766 | 7.011482 | CCTTAACCTAATATGTTCTCTGTGTGC | 59.989 | 40.741 | 0.00 | 0.00 | 0.00 | 4.57 |
2316 | 2767 | 5.420725 | ACCTAATATGTTCTCTGTGTGCA | 57.579 | 39.130 | 0.00 | 0.00 | 0.00 | 4.57 |
2317 | 2768 | 5.178797 | ACCTAATATGTTCTCTGTGTGCAC | 58.821 | 41.667 | 10.75 | 10.75 | 0.00 | 4.57 |
2318 | 2769 | 5.046304 | ACCTAATATGTTCTCTGTGTGCACT | 60.046 | 40.000 | 19.41 | 0.00 | 0.00 | 4.40 |
2319 | 2770 | 5.877012 | CCTAATATGTTCTCTGTGTGCACTT | 59.123 | 40.000 | 19.41 | 1.31 | 0.00 | 3.16 |
2320 | 2771 | 7.041721 | CCTAATATGTTCTCTGTGTGCACTTA | 58.958 | 38.462 | 19.41 | 5.91 | 0.00 | 2.24 |
2321 | 2772 | 6.974932 | AATATGTTCTCTGTGTGCACTTAG | 57.025 | 37.500 | 19.41 | 15.55 | 0.00 | 2.18 |
2322 | 2773 | 2.483876 | TGTTCTCTGTGTGCACTTAGC | 58.516 | 47.619 | 19.41 | 6.38 | 45.96 | 3.09 |
2337 | 2788 | 6.859715 | GCACTTAGCAATTTACATTGACTG | 57.140 | 37.500 | 5.78 | 0.00 | 42.35 | 3.51 |
2338 | 2789 | 6.611381 | GCACTTAGCAATTTACATTGACTGA | 58.389 | 36.000 | 5.78 | 0.00 | 42.35 | 3.41 |
2339 | 2790 | 6.524586 | GCACTTAGCAATTTACATTGACTGAC | 59.475 | 38.462 | 5.78 | 0.00 | 42.35 | 3.51 |
2340 | 2791 | 7.023575 | CACTTAGCAATTTACATTGACTGACC | 58.976 | 38.462 | 5.78 | 0.00 | 42.35 | 4.02 |
2341 | 2792 | 4.685169 | AGCAATTTACATTGACTGACCG | 57.315 | 40.909 | 5.78 | 0.00 | 42.35 | 4.79 |
2342 | 2793 | 4.072131 | AGCAATTTACATTGACTGACCGT | 58.928 | 39.130 | 5.78 | 0.00 | 42.35 | 4.83 |
2343 | 2794 | 5.242434 | AGCAATTTACATTGACTGACCGTA | 58.758 | 37.500 | 5.78 | 0.00 | 42.35 | 4.02 |
2344 | 2795 | 5.880332 | AGCAATTTACATTGACTGACCGTAT | 59.120 | 36.000 | 5.78 | 0.00 | 42.35 | 3.06 |
2345 | 2796 | 6.374333 | AGCAATTTACATTGACTGACCGTATT | 59.626 | 34.615 | 5.78 | 0.00 | 42.35 | 1.89 |
2346 | 2797 | 6.687105 | GCAATTTACATTGACTGACCGTATTC | 59.313 | 38.462 | 5.78 | 0.00 | 42.35 | 1.75 |
2347 | 2798 | 6.920569 | ATTTACATTGACTGACCGTATTCC | 57.079 | 37.500 | 0.00 | 0.00 | 0.00 | 3.01 |
2348 | 2799 | 3.973206 | ACATTGACTGACCGTATTCCA | 57.027 | 42.857 | 0.00 | 0.00 | 0.00 | 3.53 |
2349 | 2800 | 3.596214 | ACATTGACTGACCGTATTCCAC | 58.404 | 45.455 | 0.00 | 0.00 | 0.00 | 4.02 |
2350 | 2801 | 2.754946 | TTGACTGACCGTATTCCACC | 57.245 | 50.000 | 0.00 | 0.00 | 0.00 | 4.61 |
2351 | 2802 | 0.528924 | TGACTGACCGTATTCCACCG | 59.471 | 55.000 | 0.00 | 0.00 | 0.00 | 4.94 |
2352 | 2803 | 0.529378 | GACTGACCGTATTCCACCGT | 59.471 | 55.000 | 0.00 | 0.00 | 0.00 | 4.83 |
2353 | 2804 | 0.245539 | ACTGACCGTATTCCACCGTG | 59.754 | 55.000 | 0.00 | 0.00 | 0.00 | 4.94 |
2494 | 2945 | 7.224949 | GCCTTAACCTAATATGTTCTCTGTGTC | 59.775 | 40.741 | 0.00 | 0.00 | 0.00 | 3.67 |
2925 | 3377 | 1.107114 | GGAGACATGCGAAGAGGAGA | 58.893 | 55.000 | 0.00 | 0.00 | 0.00 | 3.71 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
72 | 73 | 3.260100 | CCTCCCACCAGCAAGGGT | 61.260 | 66.667 | 0.00 | 0.00 | 45.64 | 4.34 |
127 | 131 | 3.998913 | TCATGAGCAGGATACAAACCA | 57.001 | 42.857 | 0.00 | 0.00 | 41.41 | 3.67 |
261 | 268 | 6.495872 | ACAATCATTCATCAAATCCCATAGGG | 59.504 | 38.462 | 0.00 | 0.00 | 46.11 | 3.53 |
265 | 272 | 7.469594 | CGAAGACAATCATTCATCAAATCCCAT | 60.470 | 37.037 | 0.00 | 0.00 | 0.00 | 4.00 |
282 | 289 | 4.443457 | CCATACAGATCCACCGAAGACAAT | 60.443 | 45.833 | 0.00 | 0.00 | 0.00 | 2.71 |
409 | 426 | 1.014352 | AGACACGAAGTTGTTGTGCC | 58.986 | 50.000 | 0.00 | 0.00 | 41.61 | 5.01 |
423 | 441 | 9.856488 | TCAAATCTTATTGTAGTAGACAGACAC | 57.144 | 33.333 | 0.00 | 0.00 | 39.88 | 3.67 |
424 | 442 | 9.856488 | GTCAAATCTTATTGTAGTAGACAGACA | 57.144 | 33.333 | 0.00 | 0.00 | 39.88 | 3.41 |
482 | 501 | 0.811915 | ATAGCGAGCTGAAGACGTGT | 59.188 | 50.000 | 7.99 | 0.00 | 0.00 | 4.49 |
492 | 511 | 2.952978 | ACTACAAGCACTATAGCGAGCT | 59.047 | 45.455 | 8.62 | 8.62 | 40.15 | 4.09 |
500 | 519 | 1.743958 | AGCGACGACTACAAGCACTAT | 59.256 | 47.619 | 0.00 | 0.00 | 0.00 | 2.12 |
566 | 590 | 4.148128 | AGCATCATCCCAGTACAAAGAG | 57.852 | 45.455 | 0.00 | 0.00 | 0.00 | 2.85 |
578 | 602 | 4.694037 | TGATCGATTCATCAAGCATCATCC | 59.306 | 41.667 | 0.00 | 0.00 | 29.41 | 3.51 |
596 | 620 | 7.475771 | TTTTCCAAGGAAAACATTTTGATCG | 57.524 | 32.000 | 20.08 | 0.00 | 45.59 | 3.69 |
678 | 1027 | 7.558444 | TGTTTTCTATGTAAGGTTGTGTCCTTT | 59.442 | 33.333 | 3.31 | 0.00 | 44.36 | 3.11 |
949 | 1317 | 1.530013 | GCACTGATGGCCCCATATGC | 61.530 | 60.000 | 0.00 | 7.96 | 36.70 | 3.14 |
950 | 1318 | 0.896940 | GGCACTGATGGCCCCATATG | 60.897 | 60.000 | 0.00 | 0.00 | 45.87 | 1.78 |
951 | 1319 | 1.462035 | GGCACTGATGGCCCCATAT | 59.538 | 57.895 | 0.00 | 0.00 | 45.87 | 1.78 |
979 | 1347 | 6.169557 | TCTGATTAGGCGCTCCTTTTATAA | 57.830 | 37.500 | 7.64 | 0.00 | 40.66 | 0.98 |
987 | 1355 | 1.115930 | TCCCTCTGATTAGGCGCTCC | 61.116 | 60.000 | 7.64 | 0.00 | 35.09 | 4.70 |
995 | 1363 | 4.007581 | TGGATGACCTTCCCTCTGATTA | 57.992 | 45.455 | 0.00 | 0.00 | 34.67 | 1.75 |
999 | 1367 | 2.104451 | CTGATGGATGACCTTCCCTCTG | 59.896 | 54.545 | 0.00 | 5.03 | 38.91 | 3.35 |
1058 | 1426 | 3.131396 | GTTTTCTCAGCGAGGTCTTCAA | 58.869 | 45.455 | 5.87 | 0.00 | 0.00 | 2.69 |
1070 | 1438 | 5.520632 | TCTTGTACTCGACTGTTTTCTCAG | 58.479 | 41.667 | 0.00 | 0.00 | 40.80 | 3.35 |
1088 | 1459 | 1.985473 | TGCAAGCTTCACCATCTTGT | 58.015 | 45.000 | 0.00 | 0.00 | 39.36 | 3.16 |
1136 | 1507 | 0.669077 | ATAGGATCTGACGGACGTGC | 59.331 | 55.000 | 0.53 | 0.00 | 0.00 | 5.34 |
1226 | 1597 | 1.068434 | GATCACCAGCTAGCAGGAGAC | 59.932 | 57.143 | 30.85 | 18.13 | 0.00 | 3.36 |
1277 | 1652 | 3.496160 | GCACAAGAAGACCCTCTTTGGTA | 60.496 | 47.826 | 0.00 | 0.00 | 39.24 | 3.25 |
1288 | 1663 | 0.312102 | GTTGCCCTGCACAAGAAGAC | 59.688 | 55.000 | 0.00 | 0.00 | 38.71 | 3.01 |
1348 | 1769 | 3.289834 | GCATGGGCGATGGCGATT | 61.290 | 61.111 | 11.58 | 0.00 | 41.24 | 3.34 |
1559 | 1980 | 6.256321 | TGTTCGTAAAAGGTACTGAGTTGAAC | 59.744 | 38.462 | 0.00 | 0.00 | 40.86 | 3.18 |
1607 | 2031 | 5.051240 | CCAGTAAGTACTTTTCACGTGTGAC | 60.051 | 44.000 | 14.49 | 1.57 | 35.17 | 3.67 |
1626 | 2054 | 2.100252 | GCACCGTACATAGAAGCCAGTA | 59.900 | 50.000 | 0.00 | 0.00 | 0.00 | 2.74 |
2046 | 2484 | 3.435186 | GCAACGAGCCAAGAGCCC | 61.435 | 66.667 | 0.00 | 0.00 | 45.47 | 5.19 |
2208 | 2659 | 6.750148 | ACGTTTTATGGGATGCACTTAAAAA | 58.250 | 32.000 | 0.00 | 0.00 | 32.69 | 1.94 |
2209 | 2660 | 6.334102 | ACGTTTTATGGGATGCACTTAAAA | 57.666 | 33.333 | 0.00 | 0.00 | 0.00 | 1.52 |
2210 | 2661 | 5.968528 | ACGTTTTATGGGATGCACTTAAA | 57.031 | 34.783 | 0.00 | 0.00 | 0.00 | 1.52 |
2211 | 2662 | 5.938710 | TGTACGTTTTATGGGATGCACTTAA | 59.061 | 36.000 | 0.00 | 0.00 | 0.00 | 1.85 |
2212 | 2663 | 5.352016 | GTGTACGTTTTATGGGATGCACTTA | 59.648 | 40.000 | 0.00 | 0.00 | 0.00 | 2.24 |
2213 | 2664 | 4.155280 | GTGTACGTTTTATGGGATGCACTT | 59.845 | 41.667 | 0.00 | 0.00 | 0.00 | 3.16 |
2214 | 2665 | 3.687698 | GTGTACGTTTTATGGGATGCACT | 59.312 | 43.478 | 0.00 | 0.00 | 0.00 | 4.40 |
2215 | 2666 | 3.484557 | CGTGTACGTTTTATGGGATGCAC | 60.485 | 47.826 | 0.00 | 0.00 | 34.11 | 4.57 |
2216 | 2667 | 2.673862 | CGTGTACGTTTTATGGGATGCA | 59.326 | 45.455 | 0.00 | 0.00 | 34.11 | 3.96 |
2217 | 2668 | 2.031191 | CCGTGTACGTTTTATGGGATGC | 59.969 | 50.000 | 0.00 | 0.00 | 37.74 | 3.91 |
2218 | 2669 | 3.523547 | TCCGTGTACGTTTTATGGGATG | 58.476 | 45.455 | 0.00 | 0.00 | 37.74 | 3.51 |
2219 | 2670 | 3.891422 | TCCGTGTACGTTTTATGGGAT | 57.109 | 42.857 | 0.00 | 0.00 | 37.74 | 3.85 |
2220 | 2671 | 3.891422 | ATCCGTGTACGTTTTATGGGA | 57.109 | 42.857 | 0.00 | 0.00 | 37.74 | 4.37 |
2221 | 2672 | 4.431809 | TGTATCCGTGTACGTTTTATGGG | 58.568 | 43.478 | 0.00 | 0.00 | 37.74 | 4.00 |
2222 | 2673 | 6.592798 | AATGTATCCGTGTACGTTTTATGG | 57.407 | 37.500 | 0.00 | 0.00 | 37.74 | 2.74 |
2223 | 2674 | 7.222417 | TGGTAATGTATCCGTGTACGTTTTATG | 59.778 | 37.037 | 0.00 | 0.00 | 35.84 | 1.90 |
2224 | 2675 | 7.222611 | GTGGTAATGTATCCGTGTACGTTTTAT | 59.777 | 37.037 | 0.00 | 0.00 | 35.84 | 1.40 |
2225 | 2676 | 6.529829 | GTGGTAATGTATCCGTGTACGTTTTA | 59.470 | 38.462 | 0.00 | 0.00 | 35.84 | 1.52 |
2226 | 2677 | 5.348451 | GTGGTAATGTATCCGTGTACGTTTT | 59.652 | 40.000 | 0.00 | 0.00 | 35.84 | 2.43 |
2227 | 2678 | 4.864247 | GTGGTAATGTATCCGTGTACGTTT | 59.136 | 41.667 | 0.00 | 0.00 | 35.84 | 3.60 |
2228 | 2679 | 4.423732 | GTGGTAATGTATCCGTGTACGTT | 58.576 | 43.478 | 0.00 | 6.98 | 37.51 | 3.99 |
2229 | 2680 | 3.181487 | GGTGGTAATGTATCCGTGTACGT | 60.181 | 47.826 | 3.57 | 0.00 | 37.74 | 3.57 |
2230 | 2681 | 3.374745 | GGTGGTAATGTATCCGTGTACG | 58.625 | 50.000 | 0.00 | 0.00 | 39.44 | 3.67 |
2231 | 2682 | 3.374745 | CGGTGGTAATGTATCCGTGTAC | 58.625 | 50.000 | 0.00 | 0.00 | 36.99 | 2.90 |
2232 | 2683 | 2.223782 | GCGGTGGTAATGTATCCGTGTA | 60.224 | 50.000 | 0.00 | 0.00 | 42.62 | 2.90 |
2233 | 2684 | 1.472026 | GCGGTGGTAATGTATCCGTGT | 60.472 | 52.381 | 0.00 | 0.00 | 42.62 | 4.49 |
2234 | 2685 | 1.214367 | GCGGTGGTAATGTATCCGTG | 58.786 | 55.000 | 0.00 | 0.00 | 42.62 | 4.94 |
2235 | 2686 | 0.825410 | TGCGGTGGTAATGTATCCGT | 59.175 | 50.000 | 0.00 | 0.00 | 42.62 | 4.69 |
2236 | 2687 | 1.798223 | CATGCGGTGGTAATGTATCCG | 59.202 | 52.381 | 0.00 | 0.00 | 43.37 | 4.18 |
2237 | 2688 | 3.120321 | TCATGCGGTGGTAATGTATCC | 57.880 | 47.619 | 0.00 | 0.00 | 0.00 | 2.59 |
2238 | 2689 | 5.932303 | ACTAATCATGCGGTGGTAATGTATC | 59.068 | 40.000 | 0.00 | 0.00 | 0.00 | 2.24 |
2239 | 2690 | 5.865085 | ACTAATCATGCGGTGGTAATGTAT | 58.135 | 37.500 | 0.00 | 0.00 | 0.00 | 2.29 |
2240 | 2691 | 5.284861 | ACTAATCATGCGGTGGTAATGTA | 57.715 | 39.130 | 0.00 | 0.00 | 0.00 | 2.29 |
2241 | 2692 | 4.127171 | GACTAATCATGCGGTGGTAATGT | 58.873 | 43.478 | 0.00 | 0.00 | 0.00 | 2.71 |
2242 | 2693 | 3.498397 | GGACTAATCATGCGGTGGTAATG | 59.502 | 47.826 | 0.00 | 0.00 | 0.00 | 1.90 |
2243 | 2694 | 3.496160 | GGGACTAATCATGCGGTGGTAAT | 60.496 | 47.826 | 0.00 | 0.00 | 0.00 | 1.89 |
2244 | 2695 | 2.158871 | GGGACTAATCATGCGGTGGTAA | 60.159 | 50.000 | 0.00 | 0.00 | 0.00 | 2.85 |
2245 | 2696 | 1.414919 | GGGACTAATCATGCGGTGGTA | 59.585 | 52.381 | 0.00 | 0.00 | 0.00 | 3.25 |
2246 | 2697 | 0.180406 | GGGACTAATCATGCGGTGGT | 59.820 | 55.000 | 0.00 | 0.00 | 0.00 | 4.16 |
2247 | 2698 | 0.180171 | TGGGACTAATCATGCGGTGG | 59.820 | 55.000 | 0.00 | 0.00 | 0.00 | 4.61 |
2248 | 2699 | 1.134401 | AGTGGGACTAATCATGCGGTG | 60.134 | 52.381 | 0.00 | 0.00 | 0.00 | 4.94 |
2249 | 2700 | 1.204146 | AGTGGGACTAATCATGCGGT | 58.796 | 50.000 | 0.00 | 0.00 | 0.00 | 5.68 |
2250 | 2701 | 3.469008 | TTAGTGGGACTAATCATGCGG | 57.531 | 47.619 | 0.00 | 0.00 | 35.89 | 5.69 |
2251 | 2702 | 4.442706 | AGTTTAGTGGGACTAATCATGCG | 58.557 | 43.478 | 0.00 | 0.00 | 40.08 | 4.73 |
2252 | 2703 | 7.859325 | TTAAGTTTAGTGGGACTAATCATGC | 57.141 | 36.000 | 0.00 | 0.00 | 40.08 | 4.06 |
2253 | 2704 | 9.838339 | AGATTAAGTTTAGTGGGACTAATCATG | 57.162 | 33.333 | 0.00 | 0.00 | 40.08 | 3.07 |
2257 | 2708 | 9.813446 | CGTTAGATTAAGTTTAGTGGGACTAAT | 57.187 | 33.333 | 0.00 | 0.00 | 40.08 | 1.73 |
2258 | 2709 | 8.253113 | CCGTTAGATTAAGTTTAGTGGGACTAA | 58.747 | 37.037 | 0.00 | 0.00 | 38.79 | 2.24 |
2259 | 2710 | 7.631377 | GCCGTTAGATTAAGTTTAGTGGGACTA | 60.631 | 40.741 | 0.00 | 0.00 | 0.00 | 2.59 |
2260 | 2711 | 6.637657 | CCGTTAGATTAAGTTTAGTGGGACT | 58.362 | 40.000 | 0.00 | 0.00 | 0.00 | 3.85 |
2261 | 2712 | 5.292834 | GCCGTTAGATTAAGTTTAGTGGGAC | 59.707 | 44.000 | 0.00 | 0.00 | 0.00 | 4.46 |
2262 | 2713 | 5.188359 | AGCCGTTAGATTAAGTTTAGTGGGA | 59.812 | 40.000 | 0.00 | 0.00 | 0.00 | 4.37 |
2263 | 2714 | 5.425630 | AGCCGTTAGATTAAGTTTAGTGGG | 58.574 | 41.667 | 0.00 | 0.00 | 0.00 | 4.61 |
2264 | 2715 | 6.200475 | GCTAGCCGTTAGATTAAGTTTAGTGG | 59.800 | 42.308 | 2.29 | 0.00 | 0.00 | 4.00 |
2265 | 2716 | 6.200475 | GGCTAGCCGTTAGATTAAGTTTAGTG | 59.800 | 42.308 | 20.16 | 0.00 | 0.00 | 2.74 |
2266 | 2717 | 6.097981 | AGGCTAGCCGTTAGATTAAGTTTAGT | 59.902 | 38.462 | 27.83 | 0.51 | 41.95 | 2.24 |
2267 | 2718 | 6.514063 | AGGCTAGCCGTTAGATTAAGTTTAG | 58.486 | 40.000 | 27.83 | 0.00 | 41.95 | 1.85 |
2268 | 2719 | 6.475596 | AGGCTAGCCGTTAGATTAAGTTTA | 57.524 | 37.500 | 27.83 | 0.00 | 41.95 | 2.01 |
2269 | 2720 | 5.354842 | AGGCTAGCCGTTAGATTAAGTTT | 57.645 | 39.130 | 27.83 | 2.04 | 41.95 | 2.66 |
2270 | 2721 | 5.354842 | AAGGCTAGCCGTTAGATTAAGTT | 57.645 | 39.130 | 27.83 | 9.30 | 41.95 | 2.66 |
2271 | 2722 | 6.279123 | GTTAAGGCTAGCCGTTAGATTAAGT | 58.721 | 40.000 | 27.50 | 2.40 | 41.95 | 2.24 |
2272 | 2723 | 5.695363 | GGTTAAGGCTAGCCGTTAGATTAAG | 59.305 | 44.000 | 27.50 | 0.00 | 41.95 | 1.85 |
2273 | 2724 | 5.364735 | AGGTTAAGGCTAGCCGTTAGATTAA | 59.635 | 40.000 | 27.50 | 20.71 | 41.95 | 1.40 |
2274 | 2725 | 4.897670 | AGGTTAAGGCTAGCCGTTAGATTA | 59.102 | 41.667 | 27.50 | 16.17 | 41.95 | 1.75 |
2275 | 2726 | 3.710165 | AGGTTAAGGCTAGCCGTTAGATT | 59.290 | 43.478 | 27.50 | 17.21 | 41.95 | 2.40 |
2276 | 2727 | 3.306613 | AGGTTAAGGCTAGCCGTTAGAT | 58.693 | 45.455 | 27.50 | 11.35 | 41.95 | 1.98 |
2277 | 2728 | 2.743553 | AGGTTAAGGCTAGCCGTTAGA | 58.256 | 47.619 | 27.50 | 11.29 | 41.95 | 2.10 |
2278 | 2729 | 4.660789 | TTAGGTTAAGGCTAGCCGTTAG | 57.339 | 45.455 | 27.50 | 0.00 | 41.95 | 2.34 |
2279 | 2730 | 6.268387 | ACATATTAGGTTAAGGCTAGCCGTTA | 59.732 | 38.462 | 27.50 | 21.22 | 41.95 | 3.18 |
2280 | 2731 | 5.071384 | ACATATTAGGTTAAGGCTAGCCGTT | 59.929 | 40.000 | 27.50 | 22.19 | 41.95 | 4.44 |
2281 | 2732 | 4.591924 | ACATATTAGGTTAAGGCTAGCCGT | 59.408 | 41.667 | 27.83 | 26.74 | 41.95 | 5.68 |
2282 | 2733 | 5.148651 | ACATATTAGGTTAAGGCTAGCCG | 57.851 | 43.478 | 27.83 | 11.21 | 41.95 | 5.52 |
2283 | 2734 | 6.770542 | AGAACATATTAGGTTAAGGCTAGCC | 58.229 | 40.000 | 27.19 | 27.19 | 0.00 | 3.93 |
2284 | 2735 | 7.600752 | CAGAGAACATATTAGGTTAAGGCTAGC | 59.399 | 40.741 | 6.04 | 6.04 | 0.00 | 3.42 |
2285 | 2736 | 8.643324 | ACAGAGAACATATTAGGTTAAGGCTAG | 58.357 | 37.037 | 0.00 | 0.00 | 0.00 | 3.42 |
2286 | 2737 | 8.421784 | CACAGAGAACATATTAGGTTAAGGCTA | 58.578 | 37.037 | 0.00 | 0.00 | 0.00 | 3.93 |
2287 | 2738 | 7.092846 | ACACAGAGAACATATTAGGTTAAGGCT | 60.093 | 37.037 | 0.00 | 0.00 | 0.00 | 4.58 |
2288 | 2739 | 7.011482 | CACACAGAGAACATATTAGGTTAAGGC | 59.989 | 40.741 | 0.00 | 0.00 | 0.00 | 4.35 |
2289 | 2740 | 7.011482 | GCACACAGAGAACATATTAGGTTAAGG | 59.989 | 40.741 | 0.00 | 0.00 | 0.00 | 2.69 |
2290 | 2741 | 7.549134 | TGCACACAGAGAACATATTAGGTTAAG | 59.451 | 37.037 | 0.00 | 0.00 | 0.00 | 1.85 |
2291 | 2742 | 7.333423 | GTGCACACAGAGAACATATTAGGTTAA | 59.667 | 37.037 | 13.17 | 0.00 | 0.00 | 2.01 |
2292 | 2743 | 6.816640 | GTGCACACAGAGAACATATTAGGTTA | 59.183 | 38.462 | 13.17 | 0.00 | 0.00 | 2.85 |
2293 | 2744 | 5.643777 | GTGCACACAGAGAACATATTAGGTT | 59.356 | 40.000 | 13.17 | 0.00 | 0.00 | 3.50 |
2294 | 2745 | 5.046304 | AGTGCACACAGAGAACATATTAGGT | 60.046 | 40.000 | 21.04 | 0.00 | 0.00 | 3.08 |
2295 | 2746 | 5.423015 | AGTGCACACAGAGAACATATTAGG | 58.577 | 41.667 | 21.04 | 0.00 | 0.00 | 2.69 |
2296 | 2747 | 6.974932 | AAGTGCACACAGAGAACATATTAG | 57.025 | 37.500 | 21.04 | 0.00 | 0.00 | 1.73 |
2297 | 2748 | 6.535150 | GCTAAGTGCACACAGAGAACATATTA | 59.465 | 38.462 | 21.04 | 3.04 | 42.31 | 0.98 |
2298 | 2749 | 5.352569 | GCTAAGTGCACACAGAGAACATATT | 59.647 | 40.000 | 21.04 | 1.88 | 42.31 | 1.28 |
2299 | 2750 | 4.872691 | GCTAAGTGCACACAGAGAACATAT | 59.127 | 41.667 | 21.04 | 0.00 | 42.31 | 1.78 |
2300 | 2751 | 4.245660 | GCTAAGTGCACACAGAGAACATA | 58.754 | 43.478 | 21.04 | 0.00 | 42.31 | 2.29 |
2301 | 2752 | 3.070018 | GCTAAGTGCACACAGAGAACAT | 58.930 | 45.455 | 21.04 | 0.00 | 42.31 | 2.71 |
2302 | 2753 | 2.483876 | GCTAAGTGCACACAGAGAACA | 58.516 | 47.619 | 21.04 | 0.00 | 42.31 | 3.18 |
2314 | 2765 | 6.524586 | GTCAGTCAATGTAAATTGCTAAGTGC | 59.475 | 38.462 | 0.22 | 0.00 | 43.25 | 4.40 |
2315 | 2766 | 7.023575 | GGTCAGTCAATGTAAATTGCTAAGTG | 58.976 | 38.462 | 0.22 | 0.00 | 0.00 | 3.16 |
2316 | 2767 | 6.128282 | CGGTCAGTCAATGTAAATTGCTAAGT | 60.128 | 38.462 | 0.22 | 0.00 | 0.00 | 2.24 |
2317 | 2768 | 6.128282 | ACGGTCAGTCAATGTAAATTGCTAAG | 60.128 | 38.462 | 0.22 | 0.00 | 0.00 | 2.18 |
2318 | 2769 | 5.703592 | ACGGTCAGTCAATGTAAATTGCTAA | 59.296 | 36.000 | 0.22 | 0.00 | 0.00 | 3.09 |
2319 | 2770 | 5.242434 | ACGGTCAGTCAATGTAAATTGCTA | 58.758 | 37.500 | 0.22 | 0.00 | 0.00 | 3.49 |
2320 | 2771 | 4.072131 | ACGGTCAGTCAATGTAAATTGCT | 58.928 | 39.130 | 0.22 | 0.00 | 0.00 | 3.91 |
2321 | 2772 | 4.419522 | ACGGTCAGTCAATGTAAATTGC | 57.580 | 40.909 | 0.22 | 0.00 | 0.00 | 3.56 |
2322 | 2773 | 7.148323 | TGGAATACGGTCAGTCAATGTAAATTG | 60.148 | 37.037 | 0.00 | 0.00 | 0.00 | 2.32 |
2323 | 2774 | 6.882140 | TGGAATACGGTCAGTCAATGTAAATT | 59.118 | 34.615 | 0.00 | 0.00 | 0.00 | 1.82 |
2324 | 2775 | 6.315393 | GTGGAATACGGTCAGTCAATGTAAAT | 59.685 | 38.462 | 0.00 | 0.00 | 0.00 | 1.40 |
2325 | 2776 | 5.640357 | GTGGAATACGGTCAGTCAATGTAAA | 59.360 | 40.000 | 0.00 | 0.00 | 0.00 | 2.01 |
2326 | 2777 | 5.172934 | GTGGAATACGGTCAGTCAATGTAA | 58.827 | 41.667 | 0.00 | 0.00 | 0.00 | 2.41 |
2327 | 2778 | 4.382254 | GGTGGAATACGGTCAGTCAATGTA | 60.382 | 45.833 | 0.00 | 0.00 | 0.00 | 2.29 |
2328 | 2779 | 3.596214 | GTGGAATACGGTCAGTCAATGT | 58.404 | 45.455 | 0.00 | 0.00 | 0.00 | 2.71 |
2329 | 2780 | 2.936498 | GGTGGAATACGGTCAGTCAATG | 59.064 | 50.000 | 0.00 | 0.00 | 0.00 | 2.82 |
2330 | 2781 | 2.418197 | CGGTGGAATACGGTCAGTCAAT | 60.418 | 50.000 | 0.00 | 0.00 | 0.00 | 2.57 |
2331 | 2782 | 1.067425 | CGGTGGAATACGGTCAGTCAA | 60.067 | 52.381 | 0.00 | 0.00 | 0.00 | 3.18 |
2332 | 2783 | 0.528924 | CGGTGGAATACGGTCAGTCA | 59.471 | 55.000 | 0.00 | 0.00 | 0.00 | 3.41 |
2333 | 2784 | 0.529378 | ACGGTGGAATACGGTCAGTC | 59.471 | 55.000 | 0.00 | 0.00 | 38.30 | 3.51 |
2334 | 2785 | 0.245539 | CACGGTGGAATACGGTCAGT | 59.754 | 55.000 | 0.00 | 0.00 | 40.42 | 3.41 |
2335 | 2786 | 0.528924 | TCACGGTGGAATACGGTCAG | 59.471 | 55.000 | 8.50 | 0.00 | 40.42 | 3.51 |
2336 | 2787 | 1.135527 | GATCACGGTGGAATACGGTCA | 59.864 | 52.381 | 8.50 | 0.00 | 40.42 | 4.02 |
2337 | 2788 | 1.407979 | AGATCACGGTGGAATACGGTC | 59.592 | 52.381 | 8.50 | 0.00 | 40.42 | 4.79 |
2338 | 2789 | 1.481871 | AGATCACGGTGGAATACGGT | 58.518 | 50.000 | 8.50 | 0.00 | 42.80 | 4.83 |
2339 | 2790 | 3.936372 | ATAGATCACGGTGGAATACGG | 57.064 | 47.619 | 8.50 | 0.00 | 35.86 | 4.02 |
2340 | 2791 | 5.624344 | AGTATAGATCACGGTGGAATACG | 57.376 | 43.478 | 8.50 | 0.00 | 0.00 | 3.06 |
2341 | 2792 | 7.684937 | AGTAGTATAGATCACGGTGGAATAC | 57.315 | 40.000 | 8.50 | 10.52 | 0.00 | 1.89 |
2342 | 2793 | 9.970553 | ATAAGTAGTATAGATCACGGTGGAATA | 57.029 | 33.333 | 8.50 | 0.00 | 0.00 | 1.75 |
2343 | 2794 | 8.880991 | ATAAGTAGTATAGATCACGGTGGAAT | 57.119 | 34.615 | 8.50 | 0.00 | 0.00 | 3.01 |
2344 | 2795 | 9.797642 | TTATAAGTAGTATAGATCACGGTGGAA | 57.202 | 33.333 | 8.50 | 0.00 | 0.00 | 3.53 |
2345 | 2796 | 9.797642 | TTTATAAGTAGTATAGATCACGGTGGA | 57.202 | 33.333 | 8.50 | 0.00 | 0.00 | 4.02 |
2494 | 2945 | 7.023575 | GTCAGTCAATGTAAATTGCTAAGTGG | 58.976 | 38.462 | 0.22 | 0.00 | 0.00 | 4.00 |
2703 | 3155 | 7.665559 | TGATTAATTTCCTAATAGGATGCGCTT | 59.334 | 33.333 | 10.21 | 0.55 | 45.34 | 4.68 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.