Multiple sequence alignment - TraesCS2B01G432500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G432500 chr2B 100.000 3936 0 0 1 3936 621663742 621667677 0.000000e+00 7269.0
1 TraesCS2B01G432500 chr2A 91.897 2567 121 33 959 3483 670791891 670794412 0.000000e+00 3507.0
2 TraesCS2B01G432500 chr2A 91.721 459 26 4 3482 3934 670794443 670794895 9.280000e-176 627.0
3 TraesCS2B01G432500 chr2A 85.492 386 41 12 186 561 84004862 84004482 4.770000e-104 388.0
4 TraesCS2B01G432500 chr2A 95.918 49 2 0 3238 3286 670794187 670794139 3.260000e-11 80.5
5 TraesCS2B01G432500 chr2D 93.061 2277 107 25 869 3129 525937763 525935522 0.000000e+00 3282.0
6 TraesCS2B01G432500 chr2D 93.062 418 23 1 3517 3934 525934988 525934577 1.210000e-169 606.0
7 TraesCS2B01G432500 chr2D 94.429 359 16 4 3127 3483 525935415 525935059 2.070000e-152 549.0
8 TraesCS2B01G432500 chr2D 84.921 252 33 5 567 815 569681484 569681235 2.350000e-62 250.0
9 TraesCS2B01G432500 chr3B 82.383 579 71 20 1 555 292020331 292019760 3.560000e-130 475.0
10 TraesCS2B01G432500 chr3B 85.882 255 33 3 567 820 19741452 19741704 6.480000e-68 268.0
11 TraesCS2B01G432500 chr5B 85.558 457 47 15 109 556 467046943 467046497 9.970000e-126 460.0
12 TraesCS2B01G432500 chr7D 80.862 580 82 19 1 556 92225706 92226280 2.810000e-116 429.0
13 TraesCS2B01G432500 chr7D 85.751 386 39 14 188 561 80510969 80510588 1.030000e-105 394.0
14 TraesCS2B01G432500 chr3D 86.005 393 45 8 169 555 527706355 527705967 2.830000e-111 412.0
15 TraesCS2B01G432500 chr3D 86.472 377 38 10 188 554 11333238 11332865 6.130000e-108 401.0
16 TraesCS2B01G432500 chr3D 85.751 386 39 13 189 561 613585024 613585406 1.030000e-105 394.0
17 TraesCS2B01G432500 chr7B 85.564 381 45 8 188 561 641178480 641178857 1.330000e-104 390.0
18 TraesCS2B01G432500 chr7B 84.861 251 34 4 567 815 641178917 641179165 2.350000e-62 250.0
19 TraesCS2B01G432500 chr3A 80.403 546 69 20 3 513 686164284 686164826 7.980000e-102 381.0
20 TraesCS2B01G432500 chr3A 85.259 251 32 5 573 821 66833897 66834144 1.820000e-63 254.0
21 TraesCS2B01G432500 chr7A 87.352 253 25 6 567 815 80728552 80728801 2.320000e-72 283.0
22 TraesCS2B01G432500 chr6D 84.861 251 35 3 567 815 471528147 471527898 2.350000e-62 250.0
23 TraesCS2B01G432500 chr6D 84.400 250 38 1 567 815 387797122 387797371 1.090000e-60 244.0
24 TraesCS2B01G432500 chrUn 84.861 251 32 5 567 815 63257781 63258027 8.450000e-62 248.0
25 TraesCS2B01G432500 chr5A 85.417 240 30 5 567 803 457386879 457386642 1.090000e-60 244.0
26 TraesCS2B01G432500 chr5D 83.550 231 30 5 3 232 541940775 541940998 3.990000e-50 209.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G432500 chr2B 621663742 621667677 3935 False 7269 7269 100.000000 1 3936 1 chr2B.!!$F1 3935
1 TraesCS2B01G432500 chr2A 670791891 670794895 3004 False 2067 3507 91.809000 959 3934 2 chr2A.!!$F1 2975
2 TraesCS2B01G432500 chr2D 525934577 525937763 3186 True 1479 3282 93.517333 869 3934 3 chr2D.!!$R2 3065
3 TraesCS2B01G432500 chr3B 292019760 292020331 571 True 475 475 82.383000 1 555 1 chr3B.!!$R1 554
4 TraesCS2B01G432500 chr7D 92225706 92226280 574 False 429 429 80.862000 1 556 1 chr7D.!!$F1 555
5 TraesCS2B01G432500 chr7B 641178480 641179165 685 False 320 390 85.212500 188 815 2 chr7B.!!$F1 627
6 TraesCS2B01G432500 chr3A 686164284 686164826 542 False 381 381 80.403000 3 513 1 chr3A.!!$F2 510

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
849 992 0.034477 CCGGGCTGGTTTATTGGACT 60.034 55.0 3.48 0.0 0.0 3.85 F
2063 2223 0.323725 CTTGGAAGATGGGGTGGTGG 60.324 60.0 0.00 0.0 0.0 4.61 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2511 2679 0.678950 AAGGGCATGAAAACCGTTGG 59.321 50.0 0.0 0.0 33.01 3.77 R
3511 3851 1.279496 TGGAGCCTGCTGTTATCTGT 58.721 50.0 0.0 0.0 0.00 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
85 97 5.699438 TTTCGGCTTTTTAAACGGTTTTC 57.301 34.783 11.87 0.00 0.00 2.29
86 98 3.704512 TCGGCTTTTTAAACGGTTTTCC 58.295 40.909 11.87 3.69 0.00 3.13
220 262 1.329599 GAGTCACGGTTTTGCTTTCGT 59.670 47.619 0.00 0.00 36.19 3.85
405 466 4.124351 CCGCGAGAGGCACGGTTA 62.124 66.667 8.23 0.00 43.84 2.85
442 528 3.207669 GCCATGCCTCCTCGCAAG 61.208 66.667 0.00 0.00 43.24 4.01
494 582 0.592637 TCGCGAGAGTCACGGTTTTA 59.407 50.000 3.71 0.00 34.84 1.52
496 584 1.774639 GCGAGAGTCACGGTTTTACA 58.225 50.000 11.95 0.00 0.00 2.41
549 637 3.626924 ACGGGCGTGCCTCTTTCT 61.627 61.111 11.25 0.00 36.10 2.52
558 646 2.175236 GCCTCTTTCTGAAAGGCGG 58.825 57.895 25.32 24.20 45.55 6.13
561 649 2.079925 CCTCTTTCTGAAAGGCGGAAG 58.920 52.381 25.32 16.30 42.57 3.46
562 650 2.079925 CTCTTTCTGAAAGGCGGAAGG 58.920 52.381 25.32 3.36 42.57 3.46
563 651 1.420138 TCTTTCTGAAAGGCGGAAGGT 59.580 47.619 25.32 0.00 42.57 3.50
564 652 2.158667 TCTTTCTGAAAGGCGGAAGGTT 60.159 45.455 25.32 0.00 42.57 3.50
565 653 1.604604 TTCTGAAAGGCGGAAGGTTG 58.395 50.000 0.00 0.00 36.97 3.77
569 710 1.953686 TGAAAGGCGGAAGGTTGAAAG 59.046 47.619 0.00 0.00 0.00 2.62
572 713 2.586648 AGGCGGAAGGTTGAAAGAAT 57.413 45.000 0.00 0.00 0.00 2.40
581 722 6.270064 GGAAGGTTGAAAGAATTCGTCAAAA 58.730 36.000 21.78 6.03 38.46 2.44
583 724 6.202516 AGGTTGAAAGAATTCGTCAAAACA 57.797 33.333 21.78 5.20 38.46 2.83
584 725 6.805713 AGGTTGAAAGAATTCGTCAAAACAT 58.194 32.000 21.78 11.46 38.46 2.71
585 726 7.936584 AGGTTGAAAGAATTCGTCAAAACATA 58.063 30.769 21.78 4.36 38.46 2.29
586 727 8.576442 AGGTTGAAAGAATTCGTCAAAACATAT 58.424 29.630 21.78 8.15 38.46 1.78
587 728 8.850452 GGTTGAAAGAATTCGTCAAAACATATC 58.150 33.333 21.78 11.98 38.46 1.63
589 730 9.958234 TTGAAAGAATTCGTCAAAACATATCAA 57.042 25.926 19.30 9.19 38.46 2.57
617 758 5.245075 GGGATCTAGTTTGGAAGATCTCGAT 59.755 44.000 11.05 0.00 44.94 3.59
619 760 6.239176 GGATCTAGTTTGGAAGATCTCGATGT 60.239 42.308 11.05 0.00 44.94 3.06
668 809 0.674534 ATTTGGGCGCACGGTTTAAA 59.325 45.000 10.83 1.28 0.00 1.52
669 810 0.458669 TTTGGGCGCACGGTTTAAAA 59.541 45.000 10.83 0.00 0.00 1.52
677 818 4.860352 GGCGCACGGTTTAAAAGATAAAAT 59.140 37.500 10.83 0.00 0.00 1.82
678 819 6.028987 GGCGCACGGTTTAAAAGATAAAATA 58.971 36.000 10.83 0.00 0.00 1.40
732 875 1.227823 CCCAGGTTGCGACAAGTGA 60.228 57.895 6.39 0.00 0.00 3.41
733 876 0.606401 CCCAGGTTGCGACAAGTGAT 60.606 55.000 6.39 0.00 0.00 3.06
737 880 0.523072 GGTTGCGACAAGTGATGCAT 59.477 50.000 6.39 0.00 37.17 3.96
757 900 4.154015 GCATATGCAGTACGCCATTTATCA 59.846 41.667 22.84 0.00 41.33 2.15
766 909 1.405105 CGCCATTTATCACAACCTGGG 59.595 52.381 0.00 0.00 0.00 4.45
770 913 4.381932 GCCATTTATCACAACCTGGGAAAG 60.382 45.833 0.00 0.00 31.08 2.62
772 915 5.245977 CCATTTATCACAACCTGGGAAAGTT 59.754 40.000 0.00 0.00 31.08 2.66
773 916 6.435904 CCATTTATCACAACCTGGGAAAGTTA 59.564 38.462 0.00 0.00 31.08 2.24
774 917 7.039363 CCATTTATCACAACCTGGGAAAGTTAA 60.039 37.037 0.00 0.00 31.08 2.01
783 926 7.290014 ACAACCTGGGAAAGTTAAAATGATCTT 59.710 33.333 0.00 0.00 0.00 2.40
784 927 7.855784 ACCTGGGAAAGTTAAAATGATCTTT 57.144 32.000 0.00 0.00 33.64 2.52
789 932 8.156165 TGGGAAAGTTAAAATGATCTTTGCAAT 58.844 29.630 0.00 0.00 39.02 3.56
803 946 8.721478 TGATCTTTGCAATGAGTACTTCTTAAC 58.279 33.333 18.58 0.00 0.00 2.01
805 948 8.087982 TCTTTGCAATGAGTACTTCTTAACTG 57.912 34.615 10.76 0.00 0.00 3.16
815 958 6.989659 AGTACTTCTTAACTGGTGATTTCGA 58.010 36.000 0.00 0.00 0.00 3.71
816 959 6.867293 AGTACTTCTTAACTGGTGATTTCGAC 59.133 38.462 0.00 0.00 0.00 4.20
817 960 4.684703 ACTTCTTAACTGGTGATTTCGACG 59.315 41.667 0.00 0.00 0.00 5.12
818 961 4.508461 TCTTAACTGGTGATTTCGACGA 57.492 40.909 0.00 0.00 0.00 4.20
819 962 4.482386 TCTTAACTGGTGATTTCGACGAG 58.518 43.478 0.00 0.00 0.00 4.18
820 963 4.216902 TCTTAACTGGTGATTTCGACGAGA 59.783 41.667 0.00 0.00 0.00 4.04
821 964 3.594603 AACTGGTGATTTCGACGAGAT 57.405 42.857 0.00 0.00 0.00 2.75
822 965 4.713824 AACTGGTGATTTCGACGAGATA 57.286 40.909 0.20 0.00 0.00 1.98
823 966 4.920640 ACTGGTGATTTCGACGAGATAT 57.079 40.909 0.20 0.00 0.00 1.63
824 967 6.387041 AACTGGTGATTTCGACGAGATATA 57.613 37.500 0.20 0.00 0.00 0.86
825 968 6.387041 ACTGGTGATTTCGACGAGATATAA 57.613 37.500 0.20 0.00 0.00 0.98
826 969 6.207213 ACTGGTGATTTCGACGAGATATAAC 58.793 40.000 0.20 1.16 0.00 1.89
827 970 6.039493 ACTGGTGATTTCGACGAGATATAACT 59.961 38.462 0.20 0.00 0.00 2.24
828 971 6.436261 TGGTGATTTCGACGAGATATAACTC 58.564 40.000 0.20 0.00 0.00 3.01
829 972 6.262496 TGGTGATTTCGACGAGATATAACTCT 59.738 38.462 8.23 0.00 35.06 3.24
830 973 6.797995 GGTGATTTCGACGAGATATAACTCTC 59.202 42.308 8.23 1.44 38.64 3.20
831 974 6.797995 GTGATTTCGACGAGATATAACTCTCC 59.202 42.308 8.23 0.00 38.78 3.71
832 975 4.986875 TTCGACGAGATATAACTCTCCG 57.013 45.455 8.23 10.27 38.78 4.63
833 976 3.324117 TCGACGAGATATAACTCTCCGG 58.676 50.000 15.43 0.00 38.78 5.14
834 977 2.415857 CGACGAGATATAACTCTCCGGG 59.584 54.545 0.00 0.00 38.78 5.73
835 978 2.161030 ACGAGATATAACTCTCCGGGC 58.839 52.381 0.00 0.00 38.78 6.13
836 979 2.224818 ACGAGATATAACTCTCCGGGCT 60.225 50.000 0.00 0.00 38.78 5.19
837 980 2.162608 CGAGATATAACTCTCCGGGCTG 59.837 54.545 0.00 0.00 38.78 4.85
838 981 2.494073 GAGATATAACTCTCCGGGCTGG 59.506 54.545 5.83 5.83 36.47 4.85
839 982 2.158295 AGATATAACTCTCCGGGCTGGT 60.158 50.000 13.14 0.00 39.52 4.00
840 983 2.170012 TATAACTCTCCGGGCTGGTT 57.830 50.000 13.14 1.36 39.52 3.67
841 984 1.286248 ATAACTCTCCGGGCTGGTTT 58.714 50.000 13.14 4.55 39.52 3.27
842 985 1.941377 TAACTCTCCGGGCTGGTTTA 58.059 50.000 13.14 3.59 39.52 2.01
843 986 1.286248 AACTCTCCGGGCTGGTTTAT 58.714 50.000 13.14 0.00 39.52 1.40
844 987 1.286248 ACTCTCCGGGCTGGTTTATT 58.714 50.000 13.14 0.00 39.52 1.40
845 988 1.065418 ACTCTCCGGGCTGGTTTATTG 60.065 52.381 13.14 1.06 39.52 1.90
846 989 0.254747 TCTCCGGGCTGGTTTATTGG 59.745 55.000 13.14 0.00 39.52 3.16
847 990 0.254747 CTCCGGGCTGGTTTATTGGA 59.745 55.000 13.14 0.00 39.52 3.53
848 991 0.034863 TCCGGGCTGGTTTATTGGAC 60.035 55.000 13.14 0.00 39.52 4.02
849 992 0.034477 CCGGGCTGGTTTATTGGACT 60.034 55.000 3.48 0.00 0.00 3.85
850 993 1.615919 CCGGGCTGGTTTATTGGACTT 60.616 52.381 3.48 0.00 0.00 3.01
851 994 1.472480 CGGGCTGGTTTATTGGACTTG 59.528 52.381 0.00 0.00 0.00 3.16
852 995 2.802719 GGGCTGGTTTATTGGACTTGA 58.197 47.619 0.00 0.00 0.00 3.02
853 996 3.365472 GGGCTGGTTTATTGGACTTGAT 58.635 45.455 0.00 0.00 0.00 2.57
854 997 3.769300 GGGCTGGTTTATTGGACTTGATT 59.231 43.478 0.00 0.00 0.00 2.57
855 998 4.381932 GGGCTGGTTTATTGGACTTGATTG 60.382 45.833 0.00 0.00 0.00 2.67
856 999 4.381932 GGCTGGTTTATTGGACTTGATTGG 60.382 45.833 0.00 0.00 0.00 3.16
857 1000 4.747810 CTGGTTTATTGGACTTGATTGGC 58.252 43.478 0.00 0.00 0.00 4.52
858 1001 3.513515 TGGTTTATTGGACTTGATTGGCC 59.486 43.478 0.00 0.00 0.00 5.36
859 1002 3.769300 GGTTTATTGGACTTGATTGGCCT 59.231 43.478 3.32 0.00 0.00 5.19
860 1003 4.953579 GGTTTATTGGACTTGATTGGCCTA 59.046 41.667 3.32 0.00 0.00 3.93
861 1004 5.598417 GGTTTATTGGACTTGATTGGCCTAT 59.402 40.000 3.32 0.02 0.00 2.57
862 1005 6.461509 GGTTTATTGGACTTGATTGGCCTATG 60.462 42.308 3.77 0.00 0.00 2.23
863 1006 3.737559 TTGGACTTGATTGGCCTATGT 57.262 42.857 3.77 0.00 0.00 2.29
864 1007 3.737559 TGGACTTGATTGGCCTATGTT 57.262 42.857 3.77 0.00 0.00 2.71
865 1008 4.046286 TGGACTTGATTGGCCTATGTTT 57.954 40.909 3.77 0.00 0.00 2.83
866 1009 5.186256 TGGACTTGATTGGCCTATGTTTA 57.814 39.130 3.77 0.00 0.00 2.01
867 1010 5.765510 TGGACTTGATTGGCCTATGTTTAT 58.234 37.500 3.77 0.00 0.00 1.40
881 1024 1.004979 TGTTTATTTAGCCCAGCCCGT 59.995 47.619 0.00 0.00 0.00 5.28
919 1062 5.919755 AGGCTCTAAAGTAATTACTCCAGC 58.080 41.667 18.28 19.28 34.99 4.85
1363 1506 4.966787 GCAACGCCCCCACCTTCA 62.967 66.667 0.00 0.00 0.00 3.02
1407 1550 1.810030 GGTCATCGACGTTCCAGGC 60.810 63.158 0.00 0.00 32.65 4.85
1440 1583 2.511600 GTCATCACCTTCCCGCCG 60.512 66.667 0.00 0.00 0.00 6.46
1513 1656 5.485620 GAGTAAATTTTCGGTAGGACCTGT 58.514 41.667 3.53 0.00 35.66 4.00
1560 1704 6.899393 ACTGCATTCTTGTTATTTGAAGGA 57.101 33.333 0.00 0.00 0.00 3.36
1565 1709 7.025963 GCATTCTTGTTATTTGAAGGAGTGAG 58.974 38.462 0.00 0.00 0.00 3.51
1566 1710 7.533426 CATTCTTGTTATTTGAAGGAGTGAGG 58.467 38.462 0.00 0.00 0.00 3.86
1638 1782 1.388133 GGGCAATTGGGAGGTTCCT 59.612 57.895 7.72 0.00 36.57 3.36
1685 1829 2.854185 GAGTGCACAAGAGTTTGTTTGC 59.146 45.455 21.04 0.00 45.01 3.68
1715 1867 7.644945 ACATTAGCTTTACAAAACCACGTAAAC 59.355 33.333 0.00 0.00 34.68 2.01
1717 1869 5.952033 AGCTTTACAAAACCACGTAAACAA 58.048 33.333 0.00 0.00 34.68 2.83
1731 1884 6.427150 CACGTAAACAAAACAGATGTAAGCT 58.573 36.000 0.00 0.00 0.00 3.74
1923 2077 9.775854 CTAACATTTTCTATCTCATCCTCACAT 57.224 33.333 0.00 0.00 0.00 3.21
1939 2093 4.455877 CCTCACATCAACCTCTTGTAAACC 59.544 45.833 0.00 0.00 0.00 3.27
1965 2119 2.093075 TCCGTGTTTGGTGTAAACCTCA 60.093 45.455 3.10 0.00 46.44 3.86
2017 2171 1.153449 GATCCGCCGTGGTTGATCA 60.153 57.895 12.17 0.00 39.52 2.92
2018 2172 0.742990 GATCCGCCGTGGTTGATCAA 60.743 55.000 3.38 3.38 39.52 2.57
2028 2183 4.390603 CCGTGGTTGATCAATAAAAGTCGA 59.609 41.667 12.12 0.00 0.00 4.20
2063 2223 0.323725 CTTGGAAGATGGGGTGGTGG 60.324 60.000 0.00 0.00 0.00 4.61
2097 2257 3.887621 TTCCAGATTCAGTTAGGTCCG 57.112 47.619 0.00 0.00 0.00 4.79
2157 2317 4.385754 GGATTTAGGAGCCTTTCTCACCAT 60.386 45.833 0.00 0.00 43.70 3.55
2181 2341 7.439157 TCAGATTTGTAAATGGTGTCTTCAG 57.561 36.000 0.00 0.00 0.00 3.02
2195 2355 8.547967 TGGTGTCTTCAGTTCTTCATTATTAC 57.452 34.615 0.00 0.00 0.00 1.89
2221 2381 1.893315 TCCATAAGAACAGGAGGGGG 58.107 55.000 0.00 0.00 0.00 5.40
2255 2415 5.302823 GGCATGGAAGGTAGAATGCTTTATT 59.697 40.000 6.46 0.00 43.87 1.40
2282 2442 3.827008 ATGATTAGCGGTCTCACATGT 57.173 42.857 0.00 0.00 0.00 3.21
2293 2453 4.034394 CGGTCTCACATGTTATTGTCATGG 59.966 45.833 0.00 1.17 44.57 3.66
2511 2679 7.281324 TCAGACTAGAAGCTAGATGTGTAAGAC 59.719 40.741 8.36 0.00 0.00 3.01
2547 2715 5.684704 TGCCCTTCTTTCCTTGTCTATATG 58.315 41.667 0.00 0.00 0.00 1.78
2596 2764 9.131791 AGAAAAGCTTAATCAACCTTAACTTGA 57.868 29.630 0.00 0.00 32.24 3.02
2607 2775 7.509546 TCAACCTTAACTTGATTCTCTTCAGT 58.490 34.615 0.00 0.00 0.00 3.41
2619 2787 3.351740 TCTCTTCAGTCAGTGAGCTAGG 58.648 50.000 0.00 0.00 36.21 3.02
2621 2789 3.953612 CTCTTCAGTCAGTGAGCTAGGAT 59.046 47.826 0.00 0.00 36.21 3.24
2668 2836 6.202516 TGGGTCCTTTTATTTATTTGAGCG 57.797 37.500 0.00 0.00 0.00 5.03
2725 2893 7.775053 AATGAAGACCAAAAGGCTAAATACA 57.225 32.000 0.00 0.00 0.00 2.29
2930 3099 3.270027 CGTGCTCCATATTCTTGGAACA 58.730 45.455 0.00 0.00 45.03 3.18
3022 3191 4.314522 TTGCAGGACCTCATAATTTCCA 57.685 40.909 0.00 0.00 0.00 3.53
3031 3200 4.706962 ACCTCATAATTTCCAAGCAAGTCC 59.293 41.667 0.00 0.00 0.00 3.85
3173 3453 7.584987 CACTGTAGTTTCTTATGGTTGGAAAG 58.415 38.462 0.00 0.00 30.98 2.62
3265 3571 1.732259 CCCACTAAAGTAAGCAGTGCG 59.268 52.381 10.00 0.00 38.67 5.34
3360 3667 4.550076 AAGGTATCATGCTCTCTATGGC 57.450 45.455 0.00 0.00 0.00 4.40
3381 3688 7.118496 TGGCTTTTCCTTTTGACAAAATAGA 57.882 32.000 13.55 10.75 35.26 1.98
3388 3695 8.698973 TTCCTTTTGACAAAATAGACATGGTA 57.301 30.769 13.55 1.75 0.00 3.25
3447 3754 9.726438 ACATAAATATACAAAGATCTAGTGGCC 57.274 33.333 10.19 0.00 0.00 5.36
3451 3758 0.830648 CAAAGATCTAGTGGCCGGGA 59.169 55.000 2.18 0.00 0.00 5.14
3483 3790 8.721019 AAATGCATGGTAAGTTCAATTTATGG 57.279 30.769 0.00 0.00 0.00 2.74
3484 3791 5.659463 TGCATGGTAAGTTCAATTTATGGC 58.341 37.500 0.00 0.00 0.00 4.40
3491 3830 7.885922 TGGTAAGTTCAATTTATGGCTAAGACA 59.114 33.333 0.00 0.00 0.00 3.41
3500 3839 6.662414 TTTATGGCTAAGACATCAAAGTCG 57.338 37.500 0.00 0.00 43.24 4.18
3504 3844 4.020928 TGGCTAAGACATCAAAGTCGGTAA 60.021 41.667 0.00 0.00 43.24 2.85
3505 3845 5.116882 GGCTAAGACATCAAAGTCGGTAAT 58.883 41.667 0.00 0.00 43.24 1.89
3506 3846 6.127281 TGGCTAAGACATCAAAGTCGGTAATA 60.127 38.462 0.00 0.00 43.24 0.98
3508 3848 7.116519 GGCTAAGACATCAAAGTCGGTAATATC 59.883 40.741 0.00 0.00 43.24 1.63
3509 3849 7.148950 GCTAAGACATCAAAGTCGGTAATATCG 60.149 40.741 0.00 0.00 43.24 2.92
3510 3850 6.145338 AGACATCAAAGTCGGTAATATCGT 57.855 37.500 0.00 0.00 43.24 3.73
3511 3851 7.268199 AGACATCAAAGTCGGTAATATCGTA 57.732 36.000 0.00 0.00 43.24 3.43
3512 3852 7.137426 AGACATCAAAGTCGGTAATATCGTAC 58.863 38.462 0.00 0.00 43.24 3.67
3514 3854 6.916387 ACATCAAAGTCGGTAATATCGTACAG 59.084 38.462 0.00 0.00 0.00 2.74
3515 3855 6.682423 TCAAAGTCGGTAATATCGTACAGA 57.318 37.500 0.00 0.00 0.00 3.41
3532 3877 2.040278 ACAGATAACAGCAGGCTCCAAA 59.960 45.455 0.00 0.00 0.00 3.28
3538 3883 3.931907 ACAGCAGGCTCCAAACATATA 57.068 42.857 0.00 0.00 0.00 0.86
3548 3893 5.473504 GGCTCCAAACATATACTGGTTATGG 59.526 44.000 0.00 0.00 31.23 2.74
3576 3921 3.005367 AGGTTGTAAAACGCCTCAATTGG 59.995 43.478 5.42 0.00 39.71 3.16
3622 3967 8.079211 TGTCAGACTTCTTAAGCTTGGTATAT 57.921 34.615 9.86 0.00 0.00 0.86
3623 3968 9.197306 TGTCAGACTTCTTAAGCTTGGTATATA 57.803 33.333 9.86 0.00 0.00 0.86
3624 3969 9.685828 GTCAGACTTCTTAAGCTTGGTATATAG 57.314 37.037 9.86 0.10 0.00 1.31
3625 3970 9.642343 TCAGACTTCTTAAGCTTGGTATATAGA 57.358 33.333 9.86 0.00 0.00 1.98
3786 4131 5.248248 TCCTCATTTGAGTCAGGTCAATGTA 59.752 40.000 12.71 2.95 40.48 2.29
3802 4147 8.299570 AGGTCAATGTATCATTTTCACAAGAAC 58.700 33.333 0.00 0.00 32.39 3.01
3821 4166 9.023962 ACAAGAACATTATATGTGGTGTTTCAT 57.976 29.630 0.00 0.00 44.07 2.57
3849 4194 1.995376 TCTCTTTGGGAAAAGTGGCC 58.005 50.000 0.00 0.00 0.00 5.36
3897 4242 7.013083 CAGAGGGGAAAATTAAGATGTCTGATG 59.987 40.741 0.00 0.00 31.32 3.07
3898 4243 6.973642 AGGGGAAAATTAAGATGTCTGATGA 58.026 36.000 0.00 0.00 0.00 2.92
3909 4254 5.728471 AGATGTCTGATGAGTAACCACTTG 58.272 41.667 0.00 0.00 34.21 3.16
3934 4279 3.616219 TGTTACCCAAGGCACATGATAC 58.384 45.455 0.00 0.00 0.00 2.24
3935 4280 3.265737 TGTTACCCAAGGCACATGATACT 59.734 43.478 0.00 0.00 0.00 2.12
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
85 97 3.310246 CAAAACGTCAAAATAACCCGGG 58.690 45.455 22.25 22.25 0.00 5.73
86 98 3.243468 ACCAAAACGTCAAAATAACCCGG 60.243 43.478 0.00 0.00 0.00 5.73
93 105 5.163943 CGTTGGAAAACCAAAACGTCAAAAT 60.164 36.000 3.20 0.00 40.26 1.82
114 128 3.194968 TCGAAAAGCTAGGGAAGATCGTT 59.805 43.478 0.00 0.00 0.00 3.85
115 129 2.758979 TCGAAAAGCTAGGGAAGATCGT 59.241 45.455 0.00 0.00 0.00 3.73
118 132 2.838202 TGGTCGAAAAGCTAGGGAAGAT 59.162 45.455 0.00 0.00 0.00 2.40
272 322 3.654414 ACCATGACTCTCGTGAAAGAAC 58.346 45.455 0.00 0.00 35.46 3.01
428 512 2.803155 TTTCGCTTGCGAGGAGGCAT 62.803 55.000 17.06 0.00 43.52 4.40
463 551 4.569162 TGACTCTCGCGAAAGAAAGAAAAA 59.431 37.500 17.91 0.00 0.00 1.94
494 582 4.498520 CGTGCCTCTCGCGGATGT 62.499 66.667 6.13 0.00 44.36 3.06
549 637 1.953686 CTTTCAACCTTCCGCCTTTCA 59.046 47.619 0.00 0.00 0.00 2.69
556 644 3.496884 TGACGAATTCTTTCAACCTTCCG 59.503 43.478 3.52 0.00 0.00 4.30
558 646 6.750039 TGTTTTGACGAATTCTTTCAACCTTC 59.250 34.615 15.35 9.11 0.00 3.46
561 649 8.742554 ATATGTTTTGACGAATTCTTTCAACC 57.257 30.769 15.35 11.13 0.00 3.77
562 650 9.393249 TGATATGTTTTGACGAATTCTTTCAAC 57.607 29.630 15.35 9.15 0.00 3.18
563 651 9.958234 TTGATATGTTTTGACGAATTCTTTCAA 57.042 25.926 12.85 12.85 0.00 2.69
569 710 9.398170 CCCATATTGATATGTTTTGACGAATTC 57.602 33.333 9.47 0.00 38.73 2.17
572 713 8.690203 ATCCCATATTGATATGTTTTGACGAA 57.310 30.769 9.47 0.00 38.73 3.85
581 722 9.116080 TCCAAACTAGATCCCATATTGATATGT 57.884 33.333 0.00 0.00 38.73 2.29
584 725 9.392506 TCTTCCAAACTAGATCCCATATTGATA 57.607 33.333 0.00 0.00 0.00 2.15
585 726 8.280258 TCTTCCAAACTAGATCCCATATTGAT 57.720 34.615 0.00 0.00 0.00 2.57
586 727 7.690454 TCTTCCAAACTAGATCCCATATTGA 57.310 36.000 0.00 0.00 0.00 2.57
587 728 8.381636 AGATCTTCCAAACTAGATCCCATATTG 58.618 37.037 0.00 0.00 45.05 1.90
589 730 7.093552 CGAGATCTTCCAAACTAGATCCCATAT 60.094 40.741 0.00 0.00 45.05 1.78
590 731 6.209589 CGAGATCTTCCAAACTAGATCCCATA 59.790 42.308 0.00 0.00 45.05 2.74
617 758 5.531634 GCTTTCACAATTGGATTTCTCACA 58.468 37.500 10.83 0.00 0.00 3.58
619 760 4.321156 CCGCTTTCACAATTGGATTTCTCA 60.321 41.667 10.83 0.00 0.00 3.27
623 764 4.306600 GAACCGCTTTCACAATTGGATTT 58.693 39.130 10.83 0.00 33.94 2.17
631 772 2.163818 ATCTCGAACCGCTTTCACAA 57.836 45.000 0.00 0.00 33.24 3.33
632 773 2.163818 AATCTCGAACCGCTTTCACA 57.836 45.000 0.00 0.00 33.24 3.58
634 775 1.804151 CCAAATCTCGAACCGCTTTCA 59.196 47.619 0.00 0.00 33.24 2.69
702 843 2.434336 GCAACCTGGGAGTTTTTCCTTT 59.566 45.455 0.00 0.00 45.98 3.11
715 858 0.518636 CATCACTTGTCGCAACCTGG 59.481 55.000 0.00 0.00 0.00 4.45
745 888 2.091541 CCAGGTTGTGATAAATGGCGT 58.908 47.619 0.00 0.00 0.00 5.68
751 894 7.899648 TTTAACTTTCCCAGGTTGTGATAAA 57.100 32.000 0.00 0.00 0.00 1.40
754 897 6.553100 TCATTTTAACTTTCCCAGGTTGTGAT 59.447 34.615 0.00 0.00 0.00 3.06
757 900 6.782494 AGATCATTTTAACTTTCCCAGGTTGT 59.218 34.615 0.00 0.00 0.00 3.32
770 913 9.846248 AGTACTCATTGCAAAGATCATTTTAAC 57.154 29.630 1.71 0.00 0.00 2.01
773 916 8.800332 AGAAGTACTCATTGCAAAGATCATTTT 58.200 29.630 1.71 0.00 0.00 1.82
774 917 8.345724 AGAAGTACTCATTGCAAAGATCATTT 57.654 30.769 1.71 0.00 0.00 2.32
783 926 6.204688 CACCAGTTAAGAAGTACTCATTGCAA 59.795 38.462 0.00 0.00 0.00 4.08
784 927 5.700832 CACCAGTTAAGAAGTACTCATTGCA 59.299 40.000 0.00 0.00 0.00 4.08
789 932 6.866770 CGAAATCACCAGTTAAGAAGTACTCA 59.133 38.462 0.00 0.00 0.00 3.41
797 940 4.216902 TCTCGTCGAAATCACCAGTTAAGA 59.783 41.667 0.00 0.00 0.00 2.10
803 946 6.439599 AGTTATATCTCGTCGAAATCACCAG 58.560 40.000 0.00 0.00 0.00 4.00
805 948 6.670233 AGAGTTATATCTCGTCGAAATCACC 58.330 40.000 0.00 0.00 39.21 4.02
815 958 2.161030 GCCCGGAGAGTTATATCTCGT 58.839 52.381 0.73 0.00 45.60 4.18
816 959 2.162608 CAGCCCGGAGAGTTATATCTCG 59.837 54.545 0.73 0.00 45.60 4.04
817 960 2.494073 CCAGCCCGGAGAGTTATATCTC 59.506 54.545 0.73 3.01 44.21 2.75
818 961 2.158295 ACCAGCCCGGAGAGTTATATCT 60.158 50.000 0.73 0.00 38.63 1.98
819 962 2.249139 ACCAGCCCGGAGAGTTATATC 58.751 52.381 0.73 0.00 38.63 1.63
820 963 2.400467 ACCAGCCCGGAGAGTTATAT 57.600 50.000 0.73 0.00 38.63 0.86
821 964 2.170012 AACCAGCCCGGAGAGTTATA 57.830 50.000 0.73 0.00 38.63 0.98
822 965 1.286248 AAACCAGCCCGGAGAGTTAT 58.714 50.000 0.73 0.00 38.63 1.89
823 966 1.941377 TAAACCAGCCCGGAGAGTTA 58.059 50.000 0.73 0.00 38.63 2.24
824 967 1.286248 ATAAACCAGCCCGGAGAGTT 58.714 50.000 0.73 0.00 38.63 3.01
825 968 1.065418 CAATAAACCAGCCCGGAGAGT 60.065 52.381 0.73 0.00 38.63 3.24
826 969 1.668419 CAATAAACCAGCCCGGAGAG 58.332 55.000 0.73 0.00 38.63 3.20
827 970 0.254747 CCAATAAACCAGCCCGGAGA 59.745 55.000 0.73 0.00 38.63 3.71
828 971 0.254747 TCCAATAAACCAGCCCGGAG 59.745 55.000 0.73 0.00 38.63 4.63
829 972 0.034863 GTCCAATAAACCAGCCCGGA 60.035 55.000 0.73 0.00 38.63 5.14
830 973 0.034477 AGTCCAATAAACCAGCCCGG 60.034 55.000 0.00 0.00 42.50 5.73
831 974 1.472480 CAAGTCCAATAAACCAGCCCG 59.528 52.381 0.00 0.00 0.00 6.13
832 975 2.802719 TCAAGTCCAATAAACCAGCCC 58.197 47.619 0.00 0.00 0.00 5.19
833 976 4.381932 CCAATCAAGTCCAATAAACCAGCC 60.382 45.833 0.00 0.00 0.00 4.85
834 977 4.747810 CCAATCAAGTCCAATAAACCAGC 58.252 43.478 0.00 0.00 0.00 4.85
835 978 4.381932 GGCCAATCAAGTCCAATAAACCAG 60.382 45.833 0.00 0.00 0.00 4.00
836 979 3.513515 GGCCAATCAAGTCCAATAAACCA 59.486 43.478 0.00 0.00 0.00 3.67
837 980 3.769300 AGGCCAATCAAGTCCAATAAACC 59.231 43.478 5.01 0.00 0.00 3.27
838 981 6.096846 ACATAGGCCAATCAAGTCCAATAAAC 59.903 38.462 5.01 0.00 0.00 2.01
839 982 6.194235 ACATAGGCCAATCAAGTCCAATAAA 58.806 36.000 5.01 0.00 0.00 1.40
840 983 5.765510 ACATAGGCCAATCAAGTCCAATAA 58.234 37.500 5.01 0.00 0.00 1.40
841 984 5.387113 ACATAGGCCAATCAAGTCCAATA 57.613 39.130 5.01 0.00 0.00 1.90
842 985 4.255510 ACATAGGCCAATCAAGTCCAAT 57.744 40.909 5.01 0.00 0.00 3.16
843 986 3.737559 ACATAGGCCAATCAAGTCCAA 57.262 42.857 5.01 0.00 0.00 3.53
844 987 3.737559 AACATAGGCCAATCAAGTCCA 57.262 42.857 5.01 0.00 0.00 4.02
845 988 6.715347 AATAAACATAGGCCAATCAAGTCC 57.285 37.500 5.01 0.00 0.00 3.85
846 989 7.862873 GCTAAATAAACATAGGCCAATCAAGTC 59.137 37.037 5.01 0.00 0.00 3.01
847 990 7.201911 GGCTAAATAAACATAGGCCAATCAAGT 60.202 37.037 5.01 0.00 38.16 3.16
848 991 7.147976 GGCTAAATAAACATAGGCCAATCAAG 58.852 38.462 5.01 0.00 38.16 3.02
849 992 7.049799 GGCTAAATAAACATAGGCCAATCAA 57.950 36.000 5.01 0.00 38.16 2.57
850 993 6.648879 GGCTAAATAAACATAGGCCAATCA 57.351 37.500 5.01 0.00 38.16 2.57
856 999 3.255888 GGCTGGGCTAAATAAACATAGGC 59.744 47.826 0.00 0.00 34.80 3.93
857 1000 3.826729 GGGCTGGGCTAAATAAACATAGG 59.173 47.826 0.00 0.00 0.00 2.57
858 1001 3.502211 CGGGCTGGGCTAAATAAACATAG 59.498 47.826 0.00 0.00 0.00 2.23
859 1002 3.117813 ACGGGCTGGGCTAAATAAACATA 60.118 43.478 0.00 0.00 0.00 2.29
860 1003 2.306847 CGGGCTGGGCTAAATAAACAT 58.693 47.619 0.00 0.00 0.00 2.71
861 1004 1.004979 ACGGGCTGGGCTAAATAAACA 59.995 47.619 0.00 0.00 0.00 2.83
862 1005 1.404035 CACGGGCTGGGCTAAATAAAC 59.596 52.381 0.00 0.00 0.00 2.01
863 1006 1.282447 TCACGGGCTGGGCTAAATAAA 59.718 47.619 0.00 0.00 0.00 1.40
864 1007 0.913205 TCACGGGCTGGGCTAAATAA 59.087 50.000 0.00 0.00 0.00 1.40
865 1008 1.136828 ATCACGGGCTGGGCTAAATA 58.863 50.000 0.00 0.00 0.00 1.40
866 1009 1.136828 TATCACGGGCTGGGCTAAAT 58.863 50.000 0.00 0.00 0.00 1.40
867 1010 0.179468 GTATCACGGGCTGGGCTAAA 59.821 55.000 0.00 0.00 0.00 1.85
881 1024 6.525578 TTAGAGCCTTTCTTCTTCGTATCA 57.474 37.500 0.00 0.00 37.36 2.15
919 1062 1.645034 CTCACGTACTGATGCTTGGG 58.355 55.000 0.00 0.00 0.00 4.12
1101 1244 3.310860 GAAGAGGGCGCGGAGGAAA 62.311 63.158 8.83 0.00 0.00 3.13
1258 1401 2.202518 CGATACGGTGTCGGCGTT 60.203 61.111 18.02 0.00 41.39 4.84
1282 1425 4.021925 GGTGCCGGAGAGCTTGGT 62.022 66.667 5.05 0.00 0.00 3.67
1407 1550 0.174845 TGACGTTATTGAGGCTCCCG 59.825 55.000 12.86 8.81 0.00 5.14
1419 1562 0.108520 GCGGGAAGGTGATGACGTTA 60.109 55.000 0.00 0.00 30.31 3.18
1560 1704 2.240279 GTCGATATAGCACCCCTCACT 58.760 52.381 0.00 0.00 0.00 3.41
1565 1709 2.521105 AAACGTCGATATAGCACCCC 57.479 50.000 0.00 0.00 0.00 4.95
1638 1782 1.346068 CCTTTCCCAAATGGCGGAAAA 59.654 47.619 5.30 0.00 45.22 2.29
1685 1829 6.359617 CGTGGTTTTGTAAAGCTAATGTGAAG 59.640 38.462 0.00 0.00 0.00 3.02
1715 1867 5.931146 AGTCTCTGAGCTTACATCTGTTTTG 59.069 40.000 0.00 0.00 0.00 2.44
1717 1869 5.736951 AGTCTCTGAGCTTACATCTGTTT 57.263 39.130 0.00 0.00 0.00 2.83
1731 1884 1.895798 ACTGAATCGCCAAGTCTCTGA 59.104 47.619 0.00 0.00 0.00 3.27
1771 1924 7.655732 TCAGTGAAACACAATTCGAATCTTCTA 59.344 33.333 11.83 0.03 41.43 2.10
1778 1931 6.429791 TCTTTCAGTGAAACACAATTCGAA 57.570 33.333 14.35 0.00 41.43 3.71
1780 1933 7.684062 ATTTCTTTCAGTGAAACACAATTCG 57.316 32.000 14.35 2.86 41.43 3.34
1781 1934 8.872845 ACAATTTCTTTCAGTGAAACACAATTC 58.127 29.630 14.35 0.00 41.43 2.17
1868 2021 5.353394 AAGTTATTCATTAGGCACGGAGA 57.647 39.130 0.00 0.00 0.00 3.71
1905 2059 5.901853 AGGTTGATGTGAGGATGAGATAGAA 59.098 40.000 0.00 0.00 0.00 2.10
1907 2061 5.539574 AGAGGTTGATGTGAGGATGAGATAG 59.460 44.000 0.00 0.00 0.00 2.08
1923 2077 5.066764 CGGAAAAAGGTTTACAAGAGGTTGA 59.933 40.000 0.00 0.00 37.10 3.18
1939 2093 5.689927 GTTTACACCAAACACGGAAAAAG 57.310 39.130 0.00 0.00 45.01 2.27
1965 2119 3.438183 AGATTTCAAGAGGCTTGGCAAT 58.562 40.909 0.00 6.35 0.00 3.56
2028 2183 9.101655 CATCTTCCAAGAAGAAACAAAACAATT 57.898 29.630 10.83 0.00 38.77 2.32
2036 2191 3.140144 ACCCCATCTTCCAAGAAGAAACA 59.860 43.478 10.83 0.00 38.77 2.83
2037 2192 3.507622 CACCCCATCTTCCAAGAAGAAAC 59.492 47.826 10.83 0.00 38.77 2.78
2076 2236 3.775316 ACGGACCTAACTGAATCTGGAAT 59.225 43.478 0.00 0.00 0.00 3.01
2097 2257 7.592164 GCTCAATCTCCTCTTATTTCTACGTAC 59.408 40.741 0.00 0.00 0.00 3.67
2157 2317 6.998074 ACTGAAGACACCATTTACAAATCTGA 59.002 34.615 0.00 0.00 0.00 3.27
2195 2355 6.547510 CCCCTCCTGTTCTTATGGAAAAATAG 59.452 42.308 0.00 0.00 35.51 1.73
2221 2381 2.305009 CCTTCCATGCCAAGATTCTCC 58.695 52.381 4.58 0.00 0.00 3.71
2222 2382 3.010200 ACCTTCCATGCCAAGATTCTC 57.990 47.619 4.58 0.00 0.00 2.87
2255 2415 3.054728 TGAGACCGCTAATCATTTTCCCA 60.055 43.478 0.00 0.00 0.00 4.37
2282 2442 8.347004 TGATTTTTCTAGCACCATGACAATAA 57.653 30.769 0.00 0.00 0.00 1.40
2293 2453 8.774586 TCTCAAGTTAGTTGATTTTTCTAGCAC 58.225 33.333 2.71 0.00 44.44 4.40
2418 2586 8.172484 CCGTGTCGTTTAGATGAATAAATTGAA 58.828 33.333 0.00 0.00 0.00 2.69
2437 2605 2.941064 TCTTACTCAGATACCCGTGTCG 59.059 50.000 0.00 0.00 0.00 4.35
2511 2679 0.678950 AAGGGCATGAAAACCGTTGG 59.321 50.000 0.00 0.00 33.01 3.77
2547 2715 4.654262 TCCCATGTCCTATCTCCTAACAAC 59.346 45.833 0.00 0.00 0.00 3.32
2596 2764 4.402155 CCTAGCTCACTGACTGAAGAGAAT 59.598 45.833 0.00 0.00 0.00 2.40
2607 2775 5.204292 ACTTGTCATATCCTAGCTCACTGA 58.796 41.667 0.00 0.00 0.00 3.41
2619 2787 5.594317 AGGGCCACATTAAACTTGTCATATC 59.406 40.000 6.18 0.00 0.00 1.63
2621 2789 4.929479 AGGGCCACATTAAACTTGTCATA 58.071 39.130 6.18 0.00 0.00 2.15
2668 2836 4.023707 GCATGTGTATTGAGAATACCTGGC 60.024 45.833 0.00 0.00 42.41 4.85
2743 2911 0.915364 GCAGAGGGAAGGATCAAGGT 59.085 55.000 0.00 0.00 0.00 3.50
2893 3062 3.670625 AGCACGCTCCACAACTAAATAA 58.329 40.909 0.00 0.00 0.00 1.40
2930 3099 5.476945 CCCACCAAAAACTTAGCAACTATCT 59.523 40.000 0.00 0.00 0.00 1.98
2943 3112 2.630580 TGGATAAGCACCCACCAAAAAC 59.369 45.455 0.00 0.00 0.00 2.43
3022 3191 6.415573 CCTAGTAAATGGTAAGGACTTGCTT 58.584 40.000 0.40 0.00 0.00 3.91
3031 3200 5.367945 TGAAGGGCCTAGTAAATGGTAAG 57.632 43.478 6.41 0.00 0.00 2.34
3244 3524 1.468914 GCACTGCTTACTTTAGTGGGC 59.531 52.381 0.00 0.00 41.52 5.36
3245 3525 1.732259 CGCACTGCTTACTTTAGTGGG 59.268 52.381 0.00 0.00 44.89 4.61
3246 3526 1.732259 CCGCACTGCTTACTTTAGTGG 59.268 52.381 0.00 0.00 41.52 4.00
3265 3571 7.904558 AAAATCCCATAAAAGAGGAAGATCC 57.095 36.000 0.00 0.00 36.58 3.36
3292 3599 3.087031 ACATTCACTCTGAAATGCTGGG 58.913 45.455 1.48 0.00 40.12 4.45
3354 3661 7.967890 ATTTTGTCAAAAGGAAAAGCCATAG 57.032 32.000 15.57 0.00 40.02 2.23
3360 3667 8.981647 CCATGTCTATTTTGTCAAAAGGAAAAG 58.018 33.333 15.57 8.74 33.22 2.27
3388 3695 7.547227 GTTTATCCAACCATCTTTAGCAACAT 58.453 34.615 0.00 0.00 0.00 2.71
3446 3753 2.553086 CATGCATTTTCCAAATCCCGG 58.447 47.619 0.00 0.00 0.00 5.73
3447 3754 2.093553 ACCATGCATTTTCCAAATCCCG 60.094 45.455 0.00 0.00 0.00 5.14
3451 3758 6.767456 TGAACTTACCATGCATTTTCCAAAT 58.233 32.000 0.00 0.00 0.00 2.32
3483 3790 7.148950 CGATATTACCGACTTTGATGTCTTAGC 60.149 40.741 0.00 0.00 35.00 3.09
3484 3791 7.861372 ACGATATTACCGACTTTGATGTCTTAG 59.139 37.037 0.00 0.00 35.00 2.18
3491 3830 7.268199 TCTGTACGATATTACCGACTTTGAT 57.732 36.000 0.00 0.00 0.00 2.57
3500 3839 6.807230 CCTGCTGTTATCTGTACGATATTACC 59.193 42.308 7.81 1.52 34.68 2.85
3504 3844 4.524714 AGCCTGCTGTTATCTGTACGATAT 59.475 41.667 7.81 0.00 34.68 1.63
3505 3845 3.889538 AGCCTGCTGTTATCTGTACGATA 59.110 43.478 0.00 4.10 33.48 2.92
3506 3846 2.695666 AGCCTGCTGTTATCTGTACGAT 59.304 45.455 0.00 5.71 36.11 3.73
3508 3848 2.464865 GAGCCTGCTGTTATCTGTACG 58.535 52.381 0.00 0.00 0.00 3.67
3509 3849 2.168521 TGGAGCCTGCTGTTATCTGTAC 59.831 50.000 0.00 0.00 0.00 2.90
3510 3850 2.466846 TGGAGCCTGCTGTTATCTGTA 58.533 47.619 0.00 0.00 0.00 2.74
3511 3851 1.279496 TGGAGCCTGCTGTTATCTGT 58.721 50.000 0.00 0.00 0.00 3.41
3512 3852 2.408271 TTGGAGCCTGCTGTTATCTG 57.592 50.000 0.00 0.00 0.00 2.90
3514 3854 2.436417 TGTTTGGAGCCTGCTGTTATC 58.564 47.619 0.00 0.00 0.00 1.75
3515 3855 2.584835 TGTTTGGAGCCTGCTGTTAT 57.415 45.000 0.00 0.00 0.00 1.89
3532 3877 5.280676 CCTGATGGCCATAACCAGTATATGT 60.281 44.000 20.84 0.00 44.71 2.29
3538 3883 1.298953 ACCTGATGGCCATAACCAGT 58.701 50.000 20.84 9.34 44.71 4.00
3548 3893 1.402325 GGCGTTTTACAACCTGATGGC 60.402 52.381 0.00 0.00 36.63 4.40
3576 3921 4.935808 ACAGTTCCCGAACATTTCATACTC 59.064 41.667 10.07 0.00 43.47 2.59
3622 3967 6.000246 TCATGGCCATGACAATTACTTCTA 58.000 37.500 38.91 16.52 42.42 2.10
3623 3968 4.858850 TCATGGCCATGACAATTACTTCT 58.141 39.130 38.91 1.56 42.42 2.85
3821 4166 8.367156 CCACTTTTCCCAAAGAGAAATCAATAA 58.633 33.333 1.73 0.00 41.97 1.40
3827 4172 3.324846 GGCCACTTTTCCCAAAGAGAAAT 59.675 43.478 0.00 0.00 41.97 2.17
3849 4194 6.000891 TGCTAAGTTTGCAACTGTAGATTG 57.999 37.500 9.62 0.00 41.91 2.67
3876 4221 7.872113 ACTCATCAGACATCTTAATTTTCCC 57.128 36.000 0.00 0.00 0.00 3.97
3897 4242 3.439129 GGTAACATGGCAAGTGGTTACTC 59.561 47.826 22.37 14.62 43.05 2.59
3898 4243 3.418047 GGTAACATGGCAAGTGGTTACT 58.582 45.455 22.37 2.53 43.05 2.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.