AutoCloner

Multiple sequence alignment - TraesCS2B01G432200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS2B01G432200	chr2B	100.000	3097	0	0	1	3097	621263137	621260041	0.000000e+00	5720.0
1	TraesCS2B01G432200	chr2B	95.804	572	22	2	3	574	657469138	657468569	0.000000e+00	922.0
2	TraesCS2B01G432200	chr2B	95.708	466	18	2	117	582	765408678	765409141	0.000000e+00	749.0
3	TraesCS2B01G432200	chr2B	86.555	119	16	0	1260	1378	621219403	621219285	6.970000e-27	132.0
4	TraesCS2B01G432200	chr2B	95.238	63	1	2	1	63	765408623	765408683	7.070000e-17	99.0
5	TraesCS2B01G432200	chr2A	93.091	2417	111	26	721	3097	670672035	670669635	0.000000e+00	3487.0
6	TraesCS2B01G432200	chr2A	93.934	577	30	4	1	574	656688784	656688210	0.000000e+00	867.0
7	TraesCS2B01G432200	chr2A	93.496	123	4	2	573	691	670672155	670672033	2.450000e-41	180.0
8	TraesCS2B01G432200	chr2A	73.077	416	95	15	1260	1665	670666204	670665796	6.970000e-27	132.0
9	TraesCS2B01G432200	chr2D	93.440	1433	68	16	1688	3097	526117031	526118460	0.000000e+00	2102.0
10	TraesCS2B01G432200	chr2D	93.944	611	28	7	590	1194	526115545	526116152	0.000000e+00	915.0
11	TraesCS2B01G432200	chr2D	94.375	480	20	5	1207	1679	526116513	526116992	0.000000e+00	730.0
12	TraesCS2B01G432200	chr2D	85.714	119	17	0	1260	1378	526124414	526124532	3.240000e-25	126.0
13	TraesCS2B01G432200	chr5A	95.812	573	21	3	1	572	398894294	398893724	0.000000e+00	922.0
14	TraesCS2B01G432200	chr4D	81.359	574	81	16	1	572	82481001	82480452	7.880000e-121	444.0
15	TraesCS2B01G432200	chr6B	85.166	391	45	7	193	572	178209714	178210102	3.750000e-104	388.0
16	TraesCS2B01G432200	chr4A	86.581	313	40	2	194	506	534802024	534801714	8.220000e-91	344.0
17	TraesCS2B01G432200	chr4A	95.946	74	3	0	499	572	534793829	534793756	1.510000e-23	121.0
18	TraesCS2B01G432200	chr1D	96.835	158	3	2	416	572	423260969	423260813	2.370000e-66	263.0
19	TraesCS2B01G432200	chr1D	97.368	38	1	0	1558	1595	300718729	300718692	7.170000e-07	65.8
20	TraesCS2B01G432200	chr3B	92.135	89	5	2	490	576	747813132	747813044	1.170000e-24	124.0
21	TraesCS2B01G432200	chr3A	88.889	54	6	0	518	571	693448946	693448999	1.990000e-07	67.6
22	TraesCS2B01G432200	chr3A	95.122	41	2	0	1555	1595	711203530	711203570	7.170000e-07	65.8
23	TraesCS2B01G432200	chr5B	93.023	43	3	0	1553	1595	96765017	96764975	2.580000e-06	63.9
24	TraesCS2B01G432200	chr6D	94.737	38	2	0	1558	1595	276456311	276456274	3.340000e-05	60.2

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS2B01G432200	chr2B	621260041	621263137	3096	True	5720.000000	5720	100.000000	1	3097	1	chr2B.!!$R2	3096
1	TraesCS2B01G432200	chr2B	657468569	657469138	569	True	922.000000	922	95.804000	3	574	1	chr2B.!!$R3	571
2	TraesCS2B01G432200	chr2B	765408623	765409141	518	False	424.000000	749	95.473000	1	582	2	chr2B.!!$F1	581
3	TraesCS2B01G432200	chr2A	670665796	670672155	6359	True	1266.333333	3487	86.554667	573	3097	3	chr2A.!!$R2	2524
4	TraesCS2B01G432200	chr2A	656688210	656688784	574	True	867.000000	867	93.934000	1	574	1	chr2A.!!$R1	573
5	TraesCS2B01G432200	chr2D	526115545	526118460	2915	False	1249.000000	2102	93.919667	590	3097	3	chr2D.!!$F2	2507
6	TraesCS2B01G432200	chr5A	398893724	398894294	570	True	922.000000	922	95.812000	1	572	1	chr5A.!!$R1	571
7	TraesCS2B01G432200	chr4D	82480452	82481001	549	True	444.000000	444	81.359000	1	572	1	chr4D.!!$R1	571

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
629	636	0.398696	AGTATTTGACCCCACGTGCA	59.601	50.0	10.91	0.0	0.00	4.57	F
1192	1203	0.247735	CAGCGACGGTAAGTCTCTCG	60.248	60.0	0.00	0.0	42.51	4.04	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1431	1800	0.110056	CATCCACTTTGCACGCTGAC	60.110	55.000	0.0	0.0	0.0	3.51	R
2383	2791	1.075896	AAGTTTCGGCACCCCCAAA	60.076	52.632	0.0	0.0	0.0	3.28	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
107	108	8.594687	GCTTTATTAAAATCAATGTTGACGCAT	58.405	29.630	0.00	0.00	40.49	4.73
191	192	2.315925	TCTTGGCTCGTCCATGATTC	57.684	50.000	0.00	0.00	46.04	2.52
216	217	3.736094	TCCATGGGTTAGTTGATCCTCT	58.264	45.455	13.02	0.00	0.00	3.69
217	218	3.711704	TCCATGGGTTAGTTGATCCTCTC	59.288	47.826	13.02	0.00	0.00	3.20
282	286	5.391310	CGCAAGATCTTGGCATGGAATATAC	60.391	44.000	31.41	12.64	40.74	1.47
288	292	5.065914	TCTTGGCATGGAATATACTCAAGC	58.934	41.667	0.00	0.00	32.82	4.01
335	339	0.478072	ACACATTCACCAGGGAGCAA	59.522	50.000	0.00	0.00	0.00	3.91
523	527	5.418524	CACATGACCCAATTGTAATTCCTGA	59.581	40.000	0.00	0.00	0.00	3.86
613	617	1.626321	TCAAGATGGGCCGTTTGAGTA	59.374	47.619	15.08	0.41	0.00	2.59
622	629	1.471287	GCCGTTTGAGTATTTGACCCC	59.529	52.381	0.00	0.00	0.00	4.95
623	630	2.785562	CCGTTTGAGTATTTGACCCCA	58.214	47.619	0.00	0.00	0.00	4.96
624	631	2.486592	CCGTTTGAGTATTTGACCCCAC	59.513	50.000	0.00	0.00	0.00	4.61
625	632	2.158841	CGTTTGAGTATTTGACCCCACG	59.841	50.000	0.00	0.00	0.00	4.94
626	633	3.143728	GTTTGAGTATTTGACCCCACGT	58.856	45.455	0.00	0.00	0.00	4.49
627	634	2.465860	TGAGTATTTGACCCCACGTG	57.534	50.000	9.08	9.08	0.00	4.49
628	635	1.084289	GAGTATTTGACCCCACGTGC	58.916	55.000	10.91	0.00	0.00	5.34
629	636	0.398696	AGTATTTGACCCCACGTGCA	59.601	50.000	10.91	0.00	0.00	4.57
630	637	0.519961	GTATTTGACCCCACGTGCAC	59.480	55.000	10.91	6.82	0.00	4.57
729	737	2.275089	CCATGGCCCCGTCATCAA	59.725	61.111	0.00	0.00	0.00	2.57
749	757	4.899239	GATGGCCCGCTCCGTCTG	62.899	72.222	0.00	0.00	38.74	3.51
758	766	1.666011	GCTCCGTCTGAGTTGACCA	59.334	57.895	0.00	0.00	43.48	4.02
760	768	0.673985	CTCCGTCTGAGTTGACCACA	59.326	55.000	0.00	0.00	36.27	4.17
807	815	1.822990	CCTAAACCTCAGTAGTCGCCA	59.177	52.381	0.00	0.00	0.00	5.69
808	816	2.159226	CCTAAACCTCAGTAGTCGCCAG	60.159	54.545	0.00	0.00	0.00	4.85
872	880	1.322338	CGCTCCCACGTTTATAACACG	59.678	52.381	14.50	14.50	43.52	4.49
934	942	1.597937	GCAAGCAACACCGAGTTCTTG	60.598	52.381	17.62	17.62	42.17	3.02
942	953	2.560105	ACACCGAGTTCTTGGTACTACC	59.440	50.000	10.97	0.00	36.50	3.18
995	1006	5.700183	TGTCTCCTGACTGATAGCTAGATT	58.300	41.667	0.00	0.00	43.29	2.40
1192	1203	0.247735	CAGCGACGGTAAGTCTCTCG	60.248	60.000	0.00	0.00	42.51	4.04
1193	1204	2.859933	CAGCGACGGTAAGTCTCTCGT	61.860	57.143	0.00	0.00	42.51	4.18
1194	1205	4.664176	CAGCGACGGTAAGTCTCTCGTC	62.664	59.091	0.00	0.00	42.51	4.20
1237	1601	4.052159	ACACTTGTCAGACTGAGACTTG	57.948	45.455	5.10	6.74	36.94	3.16
1252	1616	2.158813	AGACTTGCTCTTTTTCCGTGGA	60.159	45.455	0.00	0.00	0.00	4.02
1386	1754	5.983720	GTGCATGTTATCAGGTACGTAGATT	59.016	40.000	0.00	0.00	32.39	2.40
1393	1761	1.747355	CAGGTACGTAGATTGGTCGGT	59.253	52.381	0.00	0.00	0.00	4.69
1399	1767	6.595716	AGGTACGTAGATTGGTCGGTATATAC	59.404	42.308	4.14	4.14	0.00	1.47
1403	1771	6.183360	ACGTAGATTGGTCGGTATATACGATG	60.183	42.308	13.90	0.11	41.77	3.84
1431	1800	9.499585	CATTTAGATTTAGCACTTTCATGTGAG	57.500	33.333	0.00	0.00	40.12	3.51
1820	2228	0.749649	ACCTCTCCGTGCTGATCATC	59.250	55.000	0.00	0.00	0.00	2.92
1895	2303	4.715523	CCCGGCCACCACAACGAT	62.716	66.667	2.24	0.00	0.00	3.73
2383	2791	2.489938	TTTATCGCTCAGGCTTTGGT	57.510	45.000	0.00	0.00	36.09	3.67
2394	2802	3.147132	CTTTGGTTTGGGGGTGCC	58.853	61.111	0.00	0.00	0.00	5.01
2434	2842	4.806640	ATGGCCACGAAATCAGAAAAAT	57.193	36.364	8.16	0.00	0.00	1.82
2439	2847	6.152661	TGGCCACGAAATCAGAAAAATAAGAT	59.847	34.615	0.00	0.00	0.00	2.40
2569	2978	6.688073	ACTTGGATTCTGAACTAGAGGAAA	57.312	37.500	0.00	0.00	36.61	3.13
2570	2979	6.706295	ACTTGGATTCTGAACTAGAGGAAAG	58.294	40.000	0.00	0.00	36.61	2.62
2571	2980	6.271159	ACTTGGATTCTGAACTAGAGGAAAGT	59.729	38.462	0.00	0.00	36.61	2.66
2643	3058	7.751732	TGCACTTGTGCAGAAGTAATATTAAG	58.248	34.615	26.87	14.07	40.23	1.85
2649	3064	8.292444	TGTGCAGAAGTAATATTAAGGCATTT	57.708	30.769	0.00	0.00	0.00	2.32
2826	3244	2.260844	CTCAACCACTTGAGGCTTCA	57.739	50.000	0.00	0.00	46.87	3.02
2857	3275	3.629398	CCAGCCACTCTTATGTCCATTTC	59.371	47.826	0.00	0.00	0.00	2.17
2858	3276	4.264253	CAGCCACTCTTATGTCCATTTCA	58.736	43.478	0.00	0.00	0.00	2.69
2878	3296	0.179200	GATGCGTTTGGTAGGTTGCG	60.179	55.000	0.00	0.00	0.00	4.85
2918	3350	4.009675	GCATCTGTGGGTTGAGTGAATAA	58.990	43.478	0.00	0.00	0.00	1.40
2920	3352	5.392380	GCATCTGTGGGTTGAGTGAATAAAG	60.392	44.000	0.00	0.00	0.00	1.85
2928	3360	7.435192	GTGGGTTGAGTGAATAAAGACAAAAAG	59.565	37.037	0.00	0.00	0.00	2.27
2950	3384	8.856490	AAAGAAAGTTCATGTTTCACACATAC	57.144	30.769	9.25	0.00	45.06	2.39
2963	3397	5.420725	TCACACATACTTTGGCTATCTGT	57.579	39.130	0.00	0.00	0.00	3.41
2965	3399	7.124573	TCACACATACTTTGGCTATCTGTAT	57.875	36.000	0.00	0.00	0.00	2.29
2966	3400	6.986231	TCACACATACTTTGGCTATCTGTATG	59.014	38.462	12.54	12.54	43.32	2.39
2967	3401	5.760253	ACACATACTTTGGCTATCTGTATGC	59.240	40.000	13.45	0.00	42.18	3.14
2968	3402	5.759763	CACATACTTTGGCTATCTGTATGCA	59.240	40.000	13.45	0.00	42.18	3.96
2969	3403	5.760253	ACATACTTTGGCTATCTGTATGCAC	59.240	40.000	13.45	0.00	42.18	4.57
3002	3443	2.106566	TGACAAGTGTTTGGTTGGCAT	58.893	42.857	0.00	0.00	36.75	4.40
3010	3451	3.568007	GTGTTTGGTTGGCATGAGTTCTA	59.432	43.478	0.00	0.00	0.00	2.10
3035	3476	7.388437	AGATTATGGTTGTCAATGTGCAAAAT	58.612	30.769	0.00	0.00	0.00	1.82
3042	3483	6.591062	GGTTGTCAATGTGCAAAATATGATGT	59.409	34.615	0.00	0.00	0.00	3.06
3049	3490	7.599630	ATGTGCAAAATATGATGTTTGGTTC	57.400	32.000	0.00	0.00	35.66	3.62
3057	3498	6.971726	ATATGATGTTTGGTTCTGCATGAT	57.028	33.333	0.00	0.00	0.00	2.45

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
121	122	0.751277	TTGTTGTGCCCACAGTCTGG	60.751	55.000	4.53	0.00	42.94	3.86
191	192	4.103785	AGGATCAACTAACCCATGGATCAG	59.896	45.833	15.22	9.06	34.34	2.90
335	339	3.435275	TGATAGCGCCATAATCTCCTCT	58.565	45.455	2.29	0.00	0.00	3.69
523	527	7.332678	GGCTTTATTGATCAGCTGAAATGTTTT	59.667	33.333	22.50	1.08	33.76	2.43
584	588	1.134610	GGCCCATCTTGAGCAAATTGG	60.135	52.381	0.00	0.00	0.00	3.16
590	594	1.074775	AAACGGCCCATCTTGAGCA	59.925	52.632	0.00	0.00	0.00	4.26
613	617	0.539438	ATGTGCACGTGGGGTCAAAT	60.539	50.000	18.88	4.17	0.00	2.32
622	629	1.348250	GCGTCCATATGTGCACGTG	59.652	57.895	21.92	12.28	34.69	4.49
623	630	0.672091	TTGCGTCCATATGTGCACGT	60.672	50.000	17.19	17.19	37.01	4.49
624	631	0.657312	ATTGCGTCCATATGTGCACG	59.343	50.000	13.13	0.97	37.01	5.34
625	632	1.670295	TGATTGCGTCCATATGTGCAC	59.330	47.619	10.75	10.75	37.01	4.57
626	633	1.670295	GTGATTGCGTCCATATGTGCA	59.330	47.619	9.63	9.63	35.15	4.57
627	634	1.333169	CGTGATTGCGTCCATATGTGC	60.333	52.381	1.24	3.58	0.00	4.57
628	635	1.333169	GCGTGATTGCGTCCATATGTG	60.333	52.381	1.24	0.00	0.00	3.21
629	636	0.937304	GCGTGATTGCGTCCATATGT	59.063	50.000	1.24	0.00	0.00	2.29
630	637	0.936600	TGCGTGATTGCGTCCATATG	59.063	50.000	0.00	0.00	37.81	1.78
671	679	4.227527	ACTCCGGAGATTTTGGGTAAAGAT	59.772	41.667	37.69	6.35	0.00	2.40
749	757	0.308993	GCTTGCACTGTGGTCAACTC	59.691	55.000	10.21	0.00	0.00	3.01
779	787	0.833949	CTGAGGTTTAGGGAGAGGGC	59.166	60.000	0.00	0.00	0.00	5.19
807	815	0.178068	ATTATGGAGGCGAACGTGCT	59.822	50.000	0.00	0.00	34.52	4.40
808	816	1.003866	GAATTATGGAGGCGAACGTGC	60.004	52.381	0.00	0.00	0.00	5.34
872	880	7.418254	CGGGGTGGTATATATAGGATGGTTTAC	60.418	44.444	0.00	0.00	0.00	2.01
879	887	5.773680	CGATTCGGGGTGGTATATATAGGAT	59.226	44.000	0.00	0.00	0.00	3.24
934	942	3.262660	AGCTAGGTTTGTTGGGTAGTACC	59.737	47.826	11.20	11.20	37.60	3.34
942	953	1.004277	TGGGCTAGCTAGGTTTGTTGG	59.996	52.381	22.10	0.00	0.00	3.77
1170	1181	2.260434	GACTTACCGTCGCTGCCA	59.740	61.111	0.00	0.00	32.04	4.92
1192	1203	8.393366	TGTTTATACTCTGTACATGTACGAGAC	58.607	37.037	36.60	29.13	38.64	3.36
1193	1204	8.393366	GTGTTTATACTCTGTACATGTACGAGA	58.607	37.037	36.60	30.70	38.64	4.04
1194	1205	8.396390	AGTGTTTATACTCTGTACATGTACGAG	58.604	37.037	32.65	32.65	39.83	4.18
1195	1206	8.272545	AGTGTTTATACTCTGTACATGTACGA	57.727	34.615	26.59	23.52	38.85	3.43
1196	1207	8.795341	CAAGTGTTTATACTCTGTACATGTACG	58.205	37.037	26.59	21.22	38.85	3.67
1237	1601	1.223187	TTCGTCCACGGAAAAAGAGC	58.777	50.000	0.00	0.00	40.29	4.09
1252	1616	3.737172	GCGCCACCTGCATTTCGT	61.737	61.111	0.00	0.00	41.33	3.85
1303	1667	3.481009	GGCGATCATCGACGAGAAT	57.519	52.632	12.38	0.00	43.74	2.40
1333	1697	0.396435	TGCCGCTCTTGAAGAAGGAA	59.604	50.000	17.23	6.73	0.00	3.36
1386	1754	5.970317	AATGTCATCGTATATACCGACCA	57.030	39.130	16.33	11.04	37.12	4.02
1399	1767	8.390354	TGAAAGTGCTAAATCTAAATGTCATCG	58.610	33.333	0.00	0.00	0.00	3.84
1403	1771	9.282247	CACATGAAAGTGCTAAATCTAAATGTC	57.718	33.333	0.00	0.00	32.04	3.06
1431	1800	0.110056	CATCCACTTTGCACGCTGAC	60.110	55.000	0.00	0.00	0.00	3.51
1515	1884	2.426023	GTCGGGGCAGTTGTCAGT	59.574	61.111	0.00	0.00	0.00	3.41
1517	1886	4.308458	CCGTCGGGGCAGTTGTCA	62.308	66.667	2.34	0.00	0.00	3.58
1711	2119	5.305585	TGAGGAAATTAACTGACCAGTGTC	58.694	41.667	3.13	0.00	41.58	3.67
2111	2519	5.236047	CAGAACCAGATCTAAAGCATACAGC	59.764	44.000	0.00	0.00	46.19	4.40
2383	2791	1.075896	AAGTTTCGGCACCCCCAAA	60.076	52.632	0.00	0.00	0.00	3.28
2394	2802	5.025826	GCCATTTTCGTATACCAAGTTTCG	58.974	41.667	0.00	0.00	0.00	3.46
2434	2842	8.836268	TTCCGCTTTTAGTTAACAAGATCTTA	57.164	30.769	7.86	0.00	0.00	2.10
2439	2847	9.834628	CATATTTTCCGCTTTTAGTTAACAAGA	57.165	29.630	8.61	0.00	0.00	3.02
2536	2945	8.480643	AGTTCAGAATCCAAGTAAAATCTACG	57.519	34.615	0.00	0.00	0.00	3.51
2643	3058	1.997606	GCTCTGTGATTTGCAAATGCC	59.002	47.619	28.67	17.86	41.18	4.40
2649	3064	2.786777	AGTCATGCTCTGTGATTTGCA	58.213	42.857	0.00	0.00	39.83	4.08
2826	3244	6.845908	ACATAAGAGTGGCTGGATATGATTT	58.154	36.000	0.00	0.00	0.00	2.17
2857	3275	1.135689	GCAACCTACCAAACGCATCTG	60.136	52.381	0.00	0.00	0.00	2.90
2858	3276	1.165270	GCAACCTACCAAACGCATCT	58.835	50.000	0.00	0.00	0.00	2.90
2878	3296	3.676291	TGCAAATAGCCCAAAAAGGAC	57.324	42.857	0.00	0.00	44.83	3.85
2918	3350	8.925700	GTGAAACATGAACTTTCTTTTTGTCTT	58.074	29.630	0.00	0.00	36.32	3.01
2920	3352	8.238481	TGTGAAACATGAACTTTCTTTTTGTC	57.762	30.769	0.00	0.00	45.67	3.18
2950	3384	4.445453	TCAGTGCATACAGATAGCCAAAG	58.555	43.478	0.00	0.00	0.00	2.77
2966	3400	4.023707	ACTTGTCATAAAACTGCTCAGTGC	60.024	41.667	2.97	0.00	41.58	4.40
2967	3401	5.008019	ACACTTGTCATAAAACTGCTCAGTG	59.992	40.000	2.97	0.00	41.58	3.66
2968	3402	5.126067	ACACTTGTCATAAAACTGCTCAGT	58.874	37.500	0.00	0.00	44.94	3.41
2969	3403	5.679734	ACACTTGTCATAAAACTGCTCAG	57.320	39.130	0.00	0.00	0.00	3.35
2976	3417	5.006261	GCCAACCAAACACTTGTCATAAAAC	59.994	40.000	0.00	0.00	0.00	2.43
3002	3443	8.321353	ACATTGACAACCATAATCTAGAACTCA	58.679	33.333	0.00	0.00	0.00	3.41
3010	3451	5.981088	TTGCACATTGACAACCATAATCT	57.019	34.783	0.00	0.00	0.00	2.40
3035	3476	6.124340	AGATCATGCAGAACCAAACATCATA	58.876	36.000	0.00	0.00	0.00	2.15
3042	3483	5.711506	ACAACATAGATCATGCAGAACCAAA	59.288	36.000	0.00	0.00	38.29	3.28
3049	3490	4.034858	GTGACCACAACATAGATCATGCAG	59.965	45.833	0.00	0.00	38.29	4.41

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.