Multiple sequence alignment - TraesCS2B01G431900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G431900 chr2B 100.000 4234 0 0 1 4234 621065573 621061340 0.000000e+00 7819.0
1 TraesCS2B01G431900 chr2B 84.754 610 70 17 3636 4234 209833200 209833797 1.310000e-164 590.0
2 TraesCS2B01G431900 chr2B 94.891 137 7 0 3497 3633 66767212 66767348 9.220000e-52 215.0
3 TraesCS2B01G431900 chr2D 94.625 2958 106 21 1 2941 524967725 524964804 0.000000e+00 4532.0
4 TraesCS2B01G431900 chr2D 94.426 305 12 3 3044 3348 524964810 524964511 8.290000e-127 464.0
5 TraesCS2B01G431900 chr2D 91.954 261 19 2 3237 3497 524964510 524964252 8.650000e-97 364.0
6 TraesCS2B01G431900 chr2A 93.019 2994 127 39 1 2934 670461788 670458817 0.000000e+00 4296.0
7 TraesCS2B01G431900 chr2A 91.768 328 17 6 3046 3367 670458818 670458495 8.350000e-122 448.0
8 TraesCS2B01G431900 chr2A 94.406 143 7 1 3497 3639 746961531 746961672 7.130000e-53 219.0
9 TraesCS2B01G431900 chr2A 94.928 138 6 1 3502 3639 281117981 281118117 9.220000e-52 215.0
10 TraesCS2B01G431900 chr2A 99.107 112 1 0 2936 3047 180979266 180979155 7.180000e-48 202.0
11 TraesCS2B01G431900 chr2A 100.000 108 0 0 2940 3047 650256700 650256593 2.580000e-47 200.0
12 TraesCS2B01G431900 chr7B 91.528 602 44 5 3636 4233 596746467 596745869 0.000000e+00 822.0
13 TraesCS2B01G431900 chr7B 90.050 603 53 5 3636 4234 402160246 402159647 0.000000e+00 774.0
14 TraesCS2B01G431900 chr7B 86.525 564 62 11 3634 4191 220159983 220160538 3.620000e-170 608.0
15 TraesCS2B01G431900 chr5B 89.718 603 44 8 3636 4234 570110025 570110613 0.000000e+00 754.0
16 TraesCS2B01G431900 chr5B 93.706 143 8 1 3497 3639 591559011 591558870 3.320000e-51 213.0
17 TraesCS2B01G431900 chr5B 97.414 116 2 1 2940 3054 622393552 622393437 3.340000e-46 196.0
18 TraesCS2B01G431900 chr1B 86.401 603 69 11 3635 4234 655636715 655636123 0.000000e+00 647.0
19 TraesCS2B01G431900 chr3B 87.770 556 58 8 3636 4187 366143524 366144073 3.570000e-180 641.0
20 TraesCS2B01G431900 chr3B 85.938 576 67 11 3630 4200 501107392 501106826 1.680000e-168 603.0
21 TraesCS2B01G431900 chr4D 85.857 601 75 8 3637 4234 430826992 430827585 7.730000e-177 630.0
22 TraesCS2B01G431900 chr4D 93.706 143 8 1 3497 3639 235505156 235505297 3.320000e-51 213.0
23 TraesCS2B01G431900 chr6B 94.558 147 8 0 3497 3643 692642741 692642595 1.180000e-55 228.0
24 TraesCS2B01G431900 chr6B 87.500 104 13 0 2287 2390 499022358 499022461 2.070000e-23 121.0
25 TraesCS2B01G431900 chr4A 96.296 135 5 0 3497 3631 706881547 706881413 5.510000e-54 222.0
26 TraesCS2B01G431900 chr4A 82.051 78 12 2 1943 2019 113579783 113579707 9.830000e-07 65.8
27 TraesCS2B01G431900 chr7A 96.241 133 4 1 3507 3639 729950076 729950207 2.560000e-52 217.0
28 TraesCS2B01G431900 chr7A 100.000 110 0 0 2938 3047 188030337 188030228 2.000000e-48 204.0
29 TraesCS2B01G431900 chr1D 92.414 145 10 1 3495 3639 399342466 399342323 5.550000e-49 206.0
30 TraesCS2B01G431900 chr5A 99.099 111 1 0 2940 3050 9649937 9649827 2.580000e-47 200.0
31 TraesCS2B01G431900 chr5A 93.750 128 5 3 2928 3054 606350662 606350787 5.590000e-44 189.0
32 TraesCS2B01G431900 chr1A 98.246 114 2 0 2934 3047 384334442 384334555 2.580000e-47 200.0
33 TraesCS2B01G431900 chr3A 97.414 116 3 0 2932 3047 614468540 614468425 9.290000e-47 198.0
34 TraesCS2B01G431900 chr3A 95.082 122 5 1 2935 3055 697472336 697472457 1.550000e-44 191.0
35 TraesCS2B01G431900 chr6A 88.000 125 15 0 1931 2055 461833407 461833283 9.480000e-32 148.0
36 TraesCS2B01G431900 chr6A 84.000 125 20 0 2287 2411 461833051 461832927 2.070000e-23 121.0
37 TraesCS2B01G431900 chr6D 87.500 104 13 0 2287 2390 324514843 324514740 2.070000e-23 121.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G431900 chr2B 621061340 621065573 4233 True 7819.000000 7819 100.000000 1 4234 1 chr2B.!!$R1 4233
1 TraesCS2B01G431900 chr2B 209833200 209833797 597 False 590.000000 590 84.754000 3636 4234 1 chr2B.!!$F2 598
2 TraesCS2B01G431900 chr2D 524964252 524967725 3473 True 1786.666667 4532 93.668333 1 3497 3 chr2D.!!$R1 3496
3 TraesCS2B01G431900 chr2A 670458495 670461788 3293 True 2372.000000 4296 92.393500 1 3367 2 chr2A.!!$R3 3366
4 TraesCS2B01G431900 chr7B 596745869 596746467 598 True 822.000000 822 91.528000 3636 4233 1 chr7B.!!$R2 597
5 TraesCS2B01G431900 chr7B 402159647 402160246 599 True 774.000000 774 90.050000 3636 4234 1 chr7B.!!$R1 598
6 TraesCS2B01G431900 chr7B 220159983 220160538 555 False 608.000000 608 86.525000 3634 4191 1 chr7B.!!$F1 557
7 TraesCS2B01G431900 chr5B 570110025 570110613 588 False 754.000000 754 89.718000 3636 4234 1 chr5B.!!$F1 598
8 TraesCS2B01G431900 chr1B 655636123 655636715 592 True 647.000000 647 86.401000 3635 4234 1 chr1B.!!$R1 599
9 TraesCS2B01G431900 chr3B 366143524 366144073 549 False 641.000000 641 87.770000 3636 4187 1 chr3B.!!$F1 551
10 TraesCS2B01G431900 chr3B 501106826 501107392 566 True 603.000000 603 85.938000 3630 4200 1 chr3B.!!$R1 570
11 TraesCS2B01G431900 chr4D 430826992 430827585 593 False 630.000000 630 85.857000 3637 4234 1 chr4D.!!$F2 597

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
121 136 0.171903 GTGCATCACTTGGCATCACC 59.828 55.0 0.00 0.0 42.75 4.02 F
1105 1165 0.663153 GTTTGCGTTTCCACAGAGCT 59.337 50.0 0.00 0.0 0.00 4.09 F
1834 1895 0.462759 GGGAGAAGGCCTCATCAACG 60.463 60.0 5.23 0.0 43.76 4.10 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1118 1178 0.988832 ATGTGGCGGGGAGAAGTTAA 59.011 50.0 0.0 0.0 0.0 2.01 R
2151 2212 0.109597 GCGTTTGTCCTGGCATCAAG 60.110 55.0 0.0 0.0 0.0 3.02 R
3599 3773 0.183014 TAGCCACAACCCAAACCGAA 59.817 50.0 0.0 0.0 0.0 4.30 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 42 7.094933 ACAGTTTAAATTCGTGGTAATCACCTC 60.095 37.037 0.00 0.00 45.98 3.85
58 59 0.745468 CTCGTAGGTACCCCTTGCTC 59.255 60.000 8.74 0.00 42.66 4.26
59 60 1.033746 TCGTAGGTACCCCTTGCTCG 61.034 60.000 8.74 3.68 42.66 5.03
60 61 1.033746 CGTAGGTACCCCTTGCTCGA 61.034 60.000 8.74 0.00 42.66 4.04
97 112 2.791560 CACTTGACGTCAGAAGACAGTG 59.208 50.000 23.79 23.79 45.23 3.66
121 136 0.171903 GTGCATCACTTGGCATCACC 59.828 55.000 0.00 0.00 42.75 4.02
148 163 4.462508 TGTTTGGTGAGTTTTTGATGCA 57.537 36.364 0.00 0.00 0.00 3.96
155 170 7.459795 TGGTGAGTTTTTGATGCAATGTATA 57.540 32.000 0.00 0.00 0.00 1.47
161 176 7.118723 AGTTTTTGATGCAATGTATAGGAGGA 58.881 34.615 0.00 0.00 0.00 3.71
181 196 2.206322 AATGGGGAGGGTGCTATACA 57.794 50.000 0.00 0.00 0.00 2.29
370 389 7.452880 TTTCATGGTAGAGAAAAACAGGATG 57.547 36.000 0.00 0.00 34.71 3.51
420 443 4.609301 AGAAAGAGTGTGGCTAGATCTCT 58.391 43.478 0.00 0.00 37.12 3.10
426 449 2.164624 GTGTGGCTAGATCTCTGTCGTT 59.835 50.000 0.00 0.00 0.00 3.85
510 533 5.436410 CACAGATGTCTACGTAAGATCTCG 58.564 45.833 11.68 0.00 43.62 4.04
570 594 5.378230 AGATTTAGCAATCCCAGTCATGA 57.622 39.130 0.00 0.00 39.95 3.07
579 603 3.369242 TCCCAGTCATGATGAATTGCA 57.631 42.857 0.00 0.00 0.00 4.08
619 647 4.953579 ACAGGCTTGTTTTTAAAGGAGTGA 59.046 37.500 0.00 0.00 32.28 3.41
672 700 7.450074 TGGTTTTTAGAATCTGCTAGAACTCA 58.550 34.615 0.00 0.00 0.00 3.41
674 702 8.951243 GGTTTTTAGAATCTGCTAGAACTCATT 58.049 33.333 0.00 0.00 0.00 2.57
996 1025 8.980481 ATATAAACCTAGCTAAACTTGTGCAT 57.020 30.769 0.00 0.00 0.00 3.96
1005 1034 6.438763 AGCTAAACTTGTGCATAACAGTTTC 58.561 36.000 14.30 4.64 40.74 2.78
1069 1128 4.831674 ACTCATGTGTGAATCTCCATCA 57.168 40.909 0.00 0.00 33.05 3.07
1105 1165 0.663153 GTTTGCGTTTCCACAGAGCT 59.337 50.000 0.00 0.00 0.00 4.09
1115 1175 5.062308 CGTTTCCACAGAGCTATACTTTGAC 59.938 44.000 0.00 0.00 34.59 3.18
1118 1178 3.452627 CCACAGAGCTATACTTTGACCCT 59.547 47.826 0.00 0.00 34.59 4.34
1122 1182 6.535508 CACAGAGCTATACTTTGACCCTTAAC 59.464 42.308 0.00 0.00 34.59 2.01
1834 1895 0.462759 GGGAGAAGGCCTCATCAACG 60.463 60.000 5.23 0.00 43.76 4.10
1931 1992 2.280186 CAATACGCCTCGCCCCTC 60.280 66.667 0.00 0.00 0.00 4.30
2142 2203 0.857287 CGTCGATGTCATCCATGCAG 59.143 55.000 7.25 0.00 32.56 4.41
2606 2667 0.521291 CGTCCCCGTCGTTGTACTTA 59.479 55.000 0.00 0.00 0.00 2.24
2748 2809 0.954452 CGTCAAGAAGGCCAAGCTTT 59.046 50.000 5.01 0.00 0.00 3.51
2762 2823 4.015084 CCAAGCTTTGTGATCTCAAGGAT 58.985 43.478 20.05 12.97 37.37 3.24
2950 3011 8.228353 TGGTACATATATAGTACTCCCTCTGT 57.772 38.462 17.45 2.18 41.16 3.41
2951 3012 8.676020 TGGTACATATATAGTACTCCCTCTGTT 58.324 37.037 17.45 0.00 41.16 3.16
2952 3013 9.176460 GGTACATATATAGTACTCCCTCTGTTC 57.824 40.741 17.45 0.00 41.16 3.18
2953 3014 9.736414 GTACATATATAGTACTCCCTCTGTTCA 57.264 37.037 0.00 0.00 38.95 3.18
2954 3015 8.638629 ACATATATAGTACTCCCTCTGTTCAC 57.361 38.462 0.00 0.00 0.00 3.18
2955 3016 8.449625 ACATATATAGTACTCCCTCTGTTCACT 58.550 37.037 0.00 0.00 0.00 3.41
2956 3017 9.303116 CATATATAGTACTCCCTCTGTTCACTT 57.697 37.037 0.00 0.00 0.00 3.16
2957 3018 9.884814 ATATATAGTACTCCCTCTGTTCACTTT 57.115 33.333 0.00 0.00 0.00 2.66
2958 3019 6.936968 ATAGTACTCCCTCTGTTCACTTTT 57.063 37.500 0.00 0.00 0.00 2.27
2959 3020 9.710818 ATATAGTACTCCCTCTGTTCACTTTTA 57.289 33.333 0.00 0.00 0.00 1.52
2960 3021 6.936968 AGTACTCCCTCTGTTCACTTTTAT 57.063 37.500 0.00 0.00 0.00 1.40
2961 3022 9.710818 ATAGTACTCCCTCTGTTCACTTTTATA 57.289 33.333 0.00 0.00 0.00 0.98
2962 3023 8.431910 AGTACTCCCTCTGTTCACTTTTATAA 57.568 34.615 0.00 0.00 0.00 0.98
2963 3024 8.532819 AGTACTCCCTCTGTTCACTTTTATAAG 58.467 37.037 0.00 0.00 37.40 1.73
2964 3025 7.554959 ACTCCCTCTGTTCACTTTTATAAGA 57.445 36.000 0.00 0.00 35.30 2.10
2965 3026 7.387643 ACTCCCTCTGTTCACTTTTATAAGAC 58.612 38.462 0.00 0.00 35.30 3.01
2966 3027 6.708285 TCCCTCTGTTCACTTTTATAAGACC 58.292 40.000 0.00 0.00 35.30 3.85
2967 3028 6.500751 TCCCTCTGTTCACTTTTATAAGACCT 59.499 38.462 0.00 0.00 35.30 3.85
2968 3029 7.017254 TCCCTCTGTTCACTTTTATAAGACCTT 59.983 37.037 0.00 0.00 35.30 3.50
2969 3030 7.119846 CCCTCTGTTCACTTTTATAAGACCTTG 59.880 40.741 0.00 0.00 35.30 3.61
2970 3031 7.878127 CCTCTGTTCACTTTTATAAGACCTTGA 59.122 37.037 0.00 0.00 35.30 3.02
2971 3032 9.273016 CTCTGTTCACTTTTATAAGACCTTGAA 57.727 33.333 0.00 0.00 35.30 2.69
2972 3033 9.273016 TCTGTTCACTTTTATAAGACCTTGAAG 57.727 33.333 0.00 0.00 35.30 3.02
2973 3034 9.273016 CTGTTCACTTTTATAAGACCTTGAAGA 57.727 33.333 0.00 0.00 35.30 2.87
2974 3035 9.052759 TGTTCACTTTTATAAGACCTTGAAGAC 57.947 33.333 0.00 0.00 35.30 3.01
2975 3036 9.052759 GTTCACTTTTATAAGACCTTGAAGACA 57.947 33.333 0.00 0.00 35.30 3.41
2976 3037 9.793259 TTCACTTTTATAAGACCTTGAAGACAT 57.207 29.630 0.00 0.00 35.30 3.06
2977 3038 9.793259 TCACTTTTATAAGACCTTGAAGACATT 57.207 29.630 0.00 0.00 35.30 2.71
2983 3044 7.913674 ATAAGACCTTGAAGACATTTCAGAC 57.086 36.000 0.00 0.00 0.00 3.51
2984 3045 5.296151 AGACCTTGAAGACATTTCAGACA 57.704 39.130 0.00 0.00 0.00 3.41
2985 3046 5.684704 AGACCTTGAAGACATTTCAGACAA 58.315 37.500 0.00 0.00 0.00 3.18
2986 3047 6.302269 AGACCTTGAAGACATTTCAGACAAT 58.698 36.000 0.00 0.00 0.00 2.71
2987 3048 7.453393 AGACCTTGAAGACATTTCAGACAATA 58.547 34.615 0.00 0.00 0.00 1.90
2988 3049 8.105829 AGACCTTGAAGACATTTCAGACAATAT 58.894 33.333 0.00 0.00 0.00 1.28
2989 3050 8.048534 ACCTTGAAGACATTTCAGACAATATG 57.951 34.615 0.00 0.00 0.00 1.78
2990 3051 6.971184 CCTTGAAGACATTTCAGACAATATGC 59.029 38.462 0.00 0.00 0.00 3.14
2991 3052 7.362315 CCTTGAAGACATTTCAGACAATATGCA 60.362 37.037 0.00 0.00 0.00 3.96
2992 3053 7.451501 TGAAGACATTTCAGACAATATGCAA 57.548 32.000 0.00 0.00 0.00 4.08
2993 3054 7.884257 TGAAGACATTTCAGACAATATGCAAA 58.116 30.769 0.00 0.00 0.00 3.68
2994 3055 8.358895 TGAAGACATTTCAGACAATATGCAAAA 58.641 29.630 0.00 0.00 0.00 2.44
2995 3056 8.524870 AAGACATTTCAGACAATATGCAAAAC 57.475 30.769 0.00 0.00 0.00 2.43
2996 3057 7.660112 AGACATTTCAGACAATATGCAAAACA 58.340 30.769 0.00 0.00 0.00 2.83
2997 3058 7.811236 AGACATTTCAGACAATATGCAAAACAG 59.189 33.333 0.00 0.00 0.00 3.16
2998 3059 6.366877 ACATTTCAGACAATATGCAAAACAGC 59.633 34.615 0.00 0.00 0.00 4.40
2999 3060 4.439305 TCAGACAATATGCAAAACAGCC 57.561 40.909 0.00 0.00 0.00 4.85
3000 3061 4.081406 TCAGACAATATGCAAAACAGCCT 58.919 39.130 0.00 0.00 0.00 4.58
3001 3062 5.252547 TCAGACAATATGCAAAACAGCCTA 58.747 37.500 0.00 0.00 0.00 3.93
3002 3063 5.887598 TCAGACAATATGCAAAACAGCCTAT 59.112 36.000 0.00 0.00 0.00 2.57
3003 3064 6.377996 TCAGACAATATGCAAAACAGCCTATT 59.622 34.615 0.00 0.00 36.27 1.73
3004 3065 7.037438 CAGACAATATGCAAAACAGCCTATTT 58.963 34.615 0.00 0.00 34.49 1.40
3005 3066 7.546667 CAGACAATATGCAAAACAGCCTATTTT 59.453 33.333 0.00 0.00 34.49 1.82
3006 3067 7.546667 AGACAATATGCAAAACAGCCTATTTTG 59.453 33.333 3.83 3.83 45.68 2.44
3007 3068 7.385267 ACAATATGCAAAACAGCCTATTTTGA 58.615 30.769 12.19 0.00 45.75 2.69
3008 3069 7.546667 ACAATATGCAAAACAGCCTATTTTGAG 59.453 33.333 12.19 0.00 45.75 3.02
3009 3070 4.935352 TGCAAAACAGCCTATTTTGAGT 57.065 36.364 12.19 0.00 45.75 3.41
3010 3071 5.275067 TGCAAAACAGCCTATTTTGAGTT 57.725 34.783 12.19 0.00 45.75 3.01
3011 3072 5.049167 TGCAAAACAGCCTATTTTGAGTTG 58.951 37.500 12.19 4.12 45.75 3.16
3012 3073 5.049828 GCAAAACAGCCTATTTTGAGTTGT 58.950 37.500 12.19 0.00 45.75 3.32
3013 3074 5.175673 GCAAAACAGCCTATTTTGAGTTGTC 59.824 40.000 12.19 0.00 45.75 3.18
3014 3075 6.507023 CAAAACAGCCTATTTTGAGTTGTCT 58.493 36.000 1.96 0.00 45.75 3.41
3015 3076 5.695851 AACAGCCTATTTTGAGTTGTCTG 57.304 39.130 0.00 0.00 0.00 3.51
3016 3077 4.973168 ACAGCCTATTTTGAGTTGTCTGA 58.027 39.130 0.00 0.00 0.00 3.27
3017 3078 5.376625 ACAGCCTATTTTGAGTTGTCTGAA 58.623 37.500 0.00 0.00 0.00 3.02
3018 3079 5.827797 ACAGCCTATTTTGAGTTGTCTGAAA 59.172 36.000 0.00 0.00 0.00 2.69
3019 3080 6.145535 CAGCCTATTTTGAGTTGTCTGAAAC 58.854 40.000 0.00 0.00 0.00 2.78
3020 3081 5.049405 AGCCTATTTTGAGTTGTCTGAAACG 60.049 40.000 0.00 0.00 35.13 3.60
3021 3082 5.049680 GCCTATTTTGAGTTGTCTGAAACGA 60.050 40.000 0.00 0.00 35.13 3.85
3022 3083 6.363473 CCTATTTTGAGTTGTCTGAAACGAC 58.637 40.000 0.00 0.00 41.93 4.34
3033 3094 6.102006 TGTCTGAAACGACTTACAAAAGTG 57.898 37.500 0.00 0.00 46.09 3.16
3034 3095 5.870433 TGTCTGAAACGACTTACAAAAGTGA 59.130 36.000 0.00 0.00 46.09 3.41
3035 3096 6.369340 TGTCTGAAACGACTTACAAAAGTGAA 59.631 34.615 0.00 0.00 46.09 3.18
3036 3097 6.681599 GTCTGAAACGACTTACAAAAGTGAAC 59.318 38.462 0.00 0.00 46.09 3.18
3037 3098 5.552807 TGAAACGACTTACAAAAGTGAACG 58.447 37.500 0.00 0.00 46.09 3.95
3038 3099 4.525411 AACGACTTACAAAAGTGAACGG 57.475 40.909 0.00 0.00 46.09 4.44
3039 3100 3.784338 ACGACTTACAAAAGTGAACGGA 58.216 40.909 0.00 0.00 46.09 4.69
3040 3101 3.800506 ACGACTTACAAAAGTGAACGGAG 59.199 43.478 0.00 0.00 46.09 4.63
3041 3102 3.183775 CGACTTACAAAAGTGAACGGAGG 59.816 47.826 0.00 0.00 46.09 4.30
3042 3103 3.473625 ACTTACAAAAGTGAACGGAGGG 58.526 45.455 0.00 0.00 44.40 4.30
3075 3136 9.696917 AAGTTCTTTGGTTATTTTGATGATGAC 57.303 29.630 0.00 0.00 0.00 3.06
3119 3180 7.643764 GTGTAGCATTTGCATATATTGTTTCGT 59.356 33.333 5.20 0.00 45.16 3.85
3143 3204 6.564854 ACGCGTATGTACTTTAGTGATTTC 57.435 37.500 11.67 0.00 0.00 2.17
3271 3338 1.915489 ACCATCCAGGCATCACTTACA 59.085 47.619 0.00 0.00 43.14 2.41
3352 3526 3.644966 TTTGAGATTGCTAATCGGGGT 57.355 42.857 0.00 0.00 42.75 4.95
3354 3528 3.194005 TGAGATTGCTAATCGGGGTTC 57.806 47.619 0.00 0.00 42.75 3.62
3356 3530 3.199946 TGAGATTGCTAATCGGGGTTCTT 59.800 43.478 0.00 0.00 42.75 2.52
3380 3554 2.688958 CCGGTCTCCCTTAGTGTAAGAG 59.311 54.545 0.00 0.00 38.02 2.85
3383 3557 1.749634 TCTCCCTTAGTGTAAGAGCGC 59.250 52.381 0.00 0.00 38.02 5.92
3394 3568 3.062234 GTGTAAGAGCGCTACAATTCCAC 59.938 47.826 11.50 6.99 0.00 4.02
3434 3608 6.775629 TCAGCCATTTTTAGGACAGTAAAACT 59.224 34.615 0.00 0.00 32.77 2.66
3473 3647 6.627243 CCTTCTCATGCATTTGAAGATTTGA 58.373 36.000 27.12 8.93 38.42 2.69
3490 3664 8.763984 AAGATTTGAGCCATTAGATCAAGAAT 57.236 30.769 0.00 0.00 34.64 2.40
3491 3665 9.857656 AAGATTTGAGCCATTAGATCAAGAATA 57.142 29.630 0.00 0.00 34.64 1.75
3497 3671 7.237471 TGAGCCATTAGATCAAGAATATGGGTA 59.763 37.037 0.00 0.00 42.17 3.69
3498 3672 7.988937 AGCCATTAGATCAAGAATATGGGTAA 58.011 34.615 0.00 0.00 40.82 2.85
3499 3673 8.448008 AGCCATTAGATCAAGAATATGGGTAAA 58.552 33.333 0.00 0.00 40.82 2.01
3500 3674 9.077885 GCCATTAGATCAAGAATATGGGTAAAA 57.922 33.333 0.00 0.00 34.49 1.52
3506 3680 9.225682 AGATCAAGAATATGGGTAAAACTAGGA 57.774 33.333 0.00 0.00 0.00 2.94
3507 3681 9.847224 GATCAAGAATATGGGTAAAACTAGGAA 57.153 33.333 0.00 0.00 0.00 3.36
3515 3689 9.862149 ATATGGGTAAAACTAGGAATAGTTTGG 57.138 33.333 12.71 0.00 46.18 3.28
3516 3690 7.332433 TGGGTAAAACTAGGAATAGTTTGGA 57.668 36.000 12.71 3.79 46.18 3.53
3517 3691 7.935405 TGGGTAAAACTAGGAATAGTTTGGAT 58.065 34.615 12.71 2.62 46.18 3.41
3518 3692 8.050930 TGGGTAAAACTAGGAATAGTTTGGATC 58.949 37.037 12.71 6.14 46.18 3.36
3519 3693 8.050930 GGGTAAAACTAGGAATAGTTTGGATCA 58.949 37.037 12.71 0.00 46.18 2.92
3520 3694 9.457436 GGTAAAACTAGGAATAGTTTGGATCAA 57.543 33.333 12.71 0.00 46.18 2.57
3525 3699 9.588096 AACTAGGAATAGTTTGGATCAAAACTT 57.412 29.630 28.83 15.19 45.84 2.66
3529 3703 9.588096 AGGAATAGTTTGGATCAAAACTTAGTT 57.412 29.630 28.83 21.02 45.84 2.24
3533 3707 9.893305 ATAGTTTGGATCAAAACTTAGTTTTCG 57.107 29.630 28.83 14.35 45.84 3.46
3534 3708 7.200455 AGTTTGGATCAAAACTTAGTTTTCGG 58.800 34.615 20.58 10.17 45.84 4.30
3535 3709 6.702716 TTGGATCAAAACTTAGTTTTCGGT 57.297 33.333 18.82 11.55 42.78 4.69
3536 3710 6.702716 TGGATCAAAACTTAGTTTTCGGTT 57.297 33.333 18.82 5.81 42.78 4.44
3537 3711 7.102847 TGGATCAAAACTTAGTTTTCGGTTT 57.897 32.000 18.82 4.08 42.78 3.27
3538 3712 6.975772 TGGATCAAAACTTAGTTTTCGGTTTG 59.024 34.615 18.82 8.96 42.78 2.93
3539 3713 6.419710 GGATCAAAACTTAGTTTTCGGTTTGG 59.580 38.462 18.82 7.60 42.78 3.28
3540 3714 6.270156 TCAAAACTTAGTTTTCGGTTTGGT 57.730 33.333 18.82 0.00 42.78 3.67
3541 3715 6.689554 TCAAAACTTAGTTTTCGGTTTGGTT 58.310 32.000 18.82 0.00 42.78 3.67
3542 3716 7.153315 TCAAAACTTAGTTTTCGGTTTGGTTT 58.847 30.769 18.82 0.00 42.78 3.27
3543 3717 7.656542 TCAAAACTTAGTTTTCGGTTTGGTTTT 59.343 29.630 18.82 0.00 42.78 2.43
3544 3718 7.966246 AAACTTAGTTTTCGGTTTGGTTTTT 57.034 28.000 4.30 0.00 31.10 1.94
3545 3719 6.954616 ACTTAGTTTTCGGTTTGGTTTTTG 57.045 33.333 0.00 0.00 0.00 2.44
3546 3720 6.689554 ACTTAGTTTTCGGTTTGGTTTTTGA 58.310 32.000 0.00 0.00 0.00 2.69
3547 3721 7.324935 ACTTAGTTTTCGGTTTGGTTTTTGAT 58.675 30.769 0.00 0.00 0.00 2.57
3548 3722 7.820386 ACTTAGTTTTCGGTTTGGTTTTTGATT 59.180 29.630 0.00 0.00 0.00 2.57
3549 3723 8.549338 TTAGTTTTCGGTTTGGTTTTTGATTT 57.451 26.923 0.00 0.00 0.00 2.17
3550 3724 6.836953 AGTTTTCGGTTTGGTTTTTGATTTG 58.163 32.000 0.00 0.00 0.00 2.32
3551 3725 5.803020 TTTCGGTTTGGTTTTTGATTTGG 57.197 34.783 0.00 0.00 0.00 3.28
3552 3726 4.473477 TCGGTTTGGTTTTTGATTTGGT 57.527 36.364 0.00 0.00 0.00 3.67
3553 3727 4.434520 TCGGTTTGGTTTTTGATTTGGTC 58.565 39.130 0.00 0.00 0.00 4.02
3554 3728 4.160626 TCGGTTTGGTTTTTGATTTGGTCT 59.839 37.500 0.00 0.00 0.00 3.85
3555 3729 4.506288 CGGTTTGGTTTTTGATTTGGTCTC 59.494 41.667 0.00 0.00 0.00 3.36
3556 3730 5.423886 GGTTTGGTTTTTGATTTGGTCTCA 58.576 37.500 0.00 0.00 0.00 3.27
3557 3731 5.293324 GGTTTGGTTTTTGATTTGGTCTCAC 59.707 40.000 0.00 0.00 0.00 3.51
3558 3732 5.930837 TTGGTTTTTGATTTGGTCTCACT 57.069 34.783 0.00 0.00 0.00 3.41
3559 3733 7.262048 GTTTGGTTTTTGATTTGGTCTCACTA 58.738 34.615 0.00 0.00 0.00 2.74
3560 3734 6.633500 TGGTTTTTGATTTGGTCTCACTAG 57.367 37.500 0.00 0.00 0.00 2.57
3561 3735 6.126409 TGGTTTTTGATTTGGTCTCACTAGT 58.874 36.000 0.00 0.00 0.00 2.57
3562 3736 6.605594 TGGTTTTTGATTTGGTCTCACTAGTT 59.394 34.615 0.00 0.00 0.00 2.24
3563 3737 7.123547 TGGTTTTTGATTTGGTCTCACTAGTTT 59.876 33.333 0.00 0.00 0.00 2.66
3564 3738 7.435192 GGTTTTTGATTTGGTCTCACTAGTTTG 59.565 37.037 0.00 0.00 0.00 2.93
3565 3739 6.633500 TTTGATTTGGTCTCACTAGTTTGG 57.367 37.500 0.00 0.00 0.00 3.28
3566 3740 5.304686 TGATTTGGTCTCACTAGTTTGGT 57.695 39.130 0.00 0.00 0.00 3.67
3567 3741 5.305585 TGATTTGGTCTCACTAGTTTGGTC 58.694 41.667 0.00 0.00 0.00 4.02
3568 3742 5.071788 TGATTTGGTCTCACTAGTTTGGTCT 59.928 40.000 0.00 0.00 0.00 3.85
3569 3743 4.602340 TTGGTCTCACTAGTTTGGTCTC 57.398 45.455 0.00 0.00 0.00 3.36
3570 3744 2.897969 TGGTCTCACTAGTTTGGTCTCC 59.102 50.000 0.00 0.00 0.00 3.71
3571 3745 2.897969 GGTCTCACTAGTTTGGTCTCCA 59.102 50.000 0.00 0.00 0.00 3.86
3572 3746 3.306156 GGTCTCACTAGTTTGGTCTCCAC 60.306 52.174 0.00 0.00 30.78 4.02
3573 3747 3.574826 GTCTCACTAGTTTGGTCTCCACT 59.425 47.826 0.00 0.00 30.78 4.00
3574 3748 3.574396 TCTCACTAGTTTGGTCTCCACTG 59.426 47.826 0.00 0.00 30.78 3.66
3575 3749 2.632996 TCACTAGTTTGGTCTCCACTGG 59.367 50.000 0.00 0.00 30.78 4.00
3576 3750 2.632996 CACTAGTTTGGTCTCCACTGGA 59.367 50.000 0.00 0.00 30.78 3.86
3577 3751 3.261897 CACTAGTTTGGTCTCCACTGGAT 59.738 47.826 0.00 0.00 30.78 3.41
3578 3752 3.910627 ACTAGTTTGGTCTCCACTGGATT 59.089 43.478 0.00 0.00 30.78 3.01
3579 3753 3.884037 AGTTTGGTCTCCACTGGATTT 57.116 42.857 0.00 0.00 30.78 2.17
3580 3754 4.993705 AGTTTGGTCTCCACTGGATTTA 57.006 40.909 0.00 0.00 30.78 1.40
3581 3755 4.911390 AGTTTGGTCTCCACTGGATTTAG 58.089 43.478 0.00 0.00 30.78 1.85
3582 3756 4.597507 AGTTTGGTCTCCACTGGATTTAGA 59.402 41.667 0.00 0.00 30.78 2.10
3583 3757 5.251700 AGTTTGGTCTCCACTGGATTTAGAT 59.748 40.000 0.00 0.00 30.78 1.98
3584 3758 4.760530 TGGTCTCCACTGGATTTAGATG 57.239 45.455 0.00 0.00 0.00 2.90
3585 3759 3.455910 TGGTCTCCACTGGATTTAGATGG 59.544 47.826 0.00 0.00 0.00 3.51
3586 3760 3.711704 GGTCTCCACTGGATTTAGATGGA 59.288 47.826 0.00 0.00 37.11 3.41
3587 3761 4.443598 GGTCTCCACTGGATTTAGATGGAC 60.444 50.000 0.00 0.07 34.50 4.02
3588 3762 4.162320 GTCTCCACTGGATTTAGATGGACA 59.838 45.833 0.00 0.00 34.50 4.02
3589 3763 4.782691 TCTCCACTGGATTTAGATGGACAA 59.217 41.667 0.00 0.00 34.50 3.18
3590 3764 5.250543 TCTCCACTGGATTTAGATGGACAAA 59.749 40.000 0.00 0.00 34.50 2.83
3591 3765 5.253330 TCCACTGGATTTAGATGGACAAAC 58.747 41.667 0.00 0.00 34.50 2.93
3592 3766 5.009631 CCACTGGATTTAGATGGACAAACA 58.990 41.667 0.00 0.00 31.69 2.83
3593 3767 5.476599 CCACTGGATTTAGATGGACAAACAA 59.523 40.000 0.00 0.00 31.69 2.83
3594 3768 6.153340 CCACTGGATTTAGATGGACAAACAAT 59.847 38.462 0.00 0.00 31.69 2.71
3595 3769 7.309990 CCACTGGATTTAGATGGACAAACAATT 60.310 37.037 0.00 0.00 31.69 2.32
3596 3770 7.756722 CACTGGATTTAGATGGACAAACAATTC 59.243 37.037 0.00 0.00 0.00 2.17
3597 3771 6.851609 TGGATTTAGATGGACAAACAATTCG 58.148 36.000 0.00 0.00 0.00 3.34
3598 3772 6.127758 TGGATTTAGATGGACAAACAATTCGG 60.128 38.462 0.00 0.00 0.00 4.30
3599 3773 6.127730 GGATTTAGATGGACAAACAATTCGGT 60.128 38.462 0.00 0.00 0.00 4.69
3600 3774 6.642707 TTTAGATGGACAAACAATTCGGTT 57.357 33.333 0.00 0.00 0.00 4.44
3601 3775 4.766404 AGATGGACAAACAATTCGGTTC 57.234 40.909 0.00 0.00 0.00 3.62
3602 3776 3.188460 AGATGGACAAACAATTCGGTTCG 59.812 43.478 0.00 0.00 0.00 3.95
3603 3777 1.604755 TGGACAAACAATTCGGTTCGG 59.395 47.619 0.00 0.00 0.00 4.30
3604 3778 1.605232 GGACAAACAATTCGGTTCGGT 59.395 47.619 0.00 0.00 0.00 4.69
3605 3779 2.033675 GGACAAACAATTCGGTTCGGTT 59.966 45.455 0.00 0.00 0.00 4.44
3606 3780 3.489568 GGACAAACAATTCGGTTCGGTTT 60.490 43.478 0.00 0.00 32.33 3.27
3608 3782 2.785713 AACAATTCGGTTCGGTTTGG 57.214 45.000 0.00 0.00 0.00 3.28
3609 3783 0.955905 ACAATTCGGTTCGGTTTGGG 59.044 50.000 0.00 0.00 0.00 4.12
3610 3784 0.955905 CAATTCGGTTCGGTTTGGGT 59.044 50.000 0.00 0.00 0.00 4.51
3611 3785 1.338655 CAATTCGGTTCGGTTTGGGTT 59.661 47.619 0.00 0.00 0.00 4.11
3612 3786 0.955905 ATTCGGTTCGGTTTGGGTTG 59.044 50.000 0.00 0.00 0.00 3.77
3613 3787 0.394080 TTCGGTTCGGTTTGGGTTGT 60.394 50.000 0.00 0.00 0.00 3.32
3614 3788 1.096386 TCGGTTCGGTTTGGGTTGTG 61.096 55.000 0.00 0.00 0.00 3.33
3615 3789 1.737201 GGTTCGGTTTGGGTTGTGG 59.263 57.895 0.00 0.00 0.00 4.17
3616 3790 1.066752 GTTCGGTTTGGGTTGTGGC 59.933 57.895 0.00 0.00 0.00 5.01
3617 3791 1.076632 TTCGGTTTGGGTTGTGGCT 60.077 52.632 0.00 0.00 0.00 4.75
3618 3792 0.183014 TTCGGTTTGGGTTGTGGCTA 59.817 50.000 0.00 0.00 0.00 3.93
3619 3793 0.183014 TCGGTTTGGGTTGTGGCTAA 59.817 50.000 0.00 0.00 0.00 3.09
3620 3794 1.202952 TCGGTTTGGGTTGTGGCTAAT 60.203 47.619 0.00 0.00 0.00 1.73
3621 3795 2.040012 TCGGTTTGGGTTGTGGCTAATA 59.960 45.455 0.00 0.00 0.00 0.98
3622 3796 2.820787 CGGTTTGGGTTGTGGCTAATAA 59.179 45.455 0.00 0.00 0.00 1.40
3623 3797 3.366577 CGGTTTGGGTTGTGGCTAATAAC 60.367 47.826 0.00 0.00 0.00 1.89
3624 3798 3.366577 GGTTTGGGTTGTGGCTAATAACG 60.367 47.826 0.00 0.00 0.00 3.18
3625 3799 2.116827 TGGGTTGTGGCTAATAACGG 57.883 50.000 0.00 0.00 0.00 4.44
3626 3800 1.629353 TGGGTTGTGGCTAATAACGGA 59.371 47.619 0.00 0.00 0.00 4.69
3627 3801 2.240160 TGGGTTGTGGCTAATAACGGAT 59.760 45.455 0.00 0.00 0.00 4.18
3628 3802 3.284617 GGGTTGTGGCTAATAACGGATT 58.715 45.455 0.00 0.00 0.00 3.01
3632 3806 4.431416 TGTGGCTAATAACGGATTGGAT 57.569 40.909 0.71 0.00 0.00 3.41
3806 3988 5.670792 TCTAACATGGTATCAGTTTCCGT 57.329 39.130 0.00 0.00 0.00 4.69
3821 4006 4.590222 AGTTTCCGTGTTCTAAACCCTAGA 59.410 41.667 0.00 0.00 34.39 2.43
3822 4007 4.525912 TTCCGTGTTCTAAACCCTAGAC 57.474 45.455 0.00 0.00 0.00 2.59
3823 4008 2.489329 TCCGTGTTCTAAACCCTAGACG 59.511 50.000 0.00 0.00 0.00 4.18
3880 4065 2.351276 GTTGGCCTCCATGACCGT 59.649 61.111 3.32 0.00 31.53 4.83
4004 4190 1.344942 CTCTCGCCGGTCGTTTTGAG 61.345 60.000 16.00 14.33 39.67 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
58 59 0.817654 TGGCTCACATACAGAGGTCG 59.182 55.000 0.00 0.00 33.72 4.79
59 60 1.827969 AGTGGCTCACATACAGAGGTC 59.172 52.381 7.86 0.00 36.74 3.85
60 61 1.944177 AGTGGCTCACATACAGAGGT 58.056 50.000 7.86 0.00 36.74 3.85
97 112 3.566742 TGATGCCAAGTGATGCACATATC 59.433 43.478 0.00 0.00 40.88 1.63
121 136 5.577835 TCAAAAACTCACCAAACATCTTCG 58.422 37.500 0.00 0.00 0.00 3.79
148 163 4.603610 CCTCCCCATTTCCTCCTATACATT 59.396 45.833 0.00 0.00 0.00 2.71
155 170 0.921256 CACCCTCCCCATTTCCTCCT 60.921 60.000 0.00 0.00 0.00 3.69
161 176 2.498441 TGTATAGCACCCTCCCCATTT 58.502 47.619 0.00 0.00 0.00 2.32
257 272 5.705441 TGTTCTACCGCAATGATCTCTTTTT 59.295 36.000 0.00 0.00 0.00 1.94
258 273 5.245531 TGTTCTACCGCAATGATCTCTTTT 58.754 37.500 0.00 0.00 0.00 2.27
266 281 3.119280 TCTCGAATGTTCTACCGCAATGA 60.119 43.478 0.00 0.00 0.00 2.57
420 443 4.761975 ACTTGGTTAAGTCTCAAACGACA 58.238 39.130 0.00 0.00 43.53 4.35
486 509 5.176407 AGATCTTACGTAGACATCTGTGC 57.824 43.478 10.57 0.00 35.19 4.57
491 514 4.469625 TGCGAGATCTTACGTAGACATC 57.530 45.455 0.00 0.00 35.19 3.06
494 517 8.945758 TTATATTTGCGAGATCTTACGTAGAC 57.054 34.615 0.00 0.00 35.19 2.59
510 533 7.253354 CGAAGTCTCGGTCGATATTATATTTGC 60.253 40.741 0.00 0.00 41.57 3.68
547 571 5.759059 TCATGACTGGGATTGCTAAATCTT 58.241 37.500 0.00 0.00 41.74 2.40
570 594 6.613699 TCCATATTACCCTCTTGCAATTCAT 58.386 36.000 0.00 0.00 0.00 2.57
579 603 3.648545 GCCTGTCTCCATATTACCCTCTT 59.351 47.826 0.00 0.00 0.00 2.85
693 721 8.740123 TCCTCGATCTCATAAGACCTATATTC 57.260 38.462 0.00 0.00 33.32 1.75
727 755 1.993370 CATCCGTTCGAGTTGGAGTTC 59.007 52.381 8.13 0.00 34.75 3.01
993 1022 1.003866 GATCGCGGGAAACTGTTATGC 60.004 52.381 6.13 0.00 39.64 3.14
995 1024 1.134907 ACGATCGCGGGAAACTGTTAT 60.135 47.619 16.60 0.00 43.17 1.89
996 1025 0.244450 ACGATCGCGGGAAACTGTTA 59.756 50.000 16.60 0.00 43.17 2.41
1005 1034 2.358193 TAACCATGGACGATCGCGGG 62.358 60.000 21.47 11.89 43.17 6.13
1069 1128 4.929808 CGCAAACACTTAAGTACCAGAGAT 59.070 41.667 8.04 0.00 0.00 2.75
1105 1165 6.157471 GGGGAGAAGTTAAGGGTCAAAGTATA 59.843 42.308 0.00 0.00 0.00 1.47
1115 1175 1.223763 GGCGGGGAGAAGTTAAGGG 59.776 63.158 0.00 0.00 0.00 3.95
1118 1178 0.988832 ATGTGGCGGGGAGAAGTTAA 59.011 50.000 0.00 0.00 0.00 2.01
1122 1182 1.002134 AACATGTGGCGGGGAGAAG 60.002 57.895 0.00 0.00 0.00 2.85
1367 1428 2.367202 GGACGGCCCATCTTCTCCA 61.367 63.158 0.00 0.00 34.14 3.86
1571 1632 2.687805 CGCGTCCTCCTCTTCGTCA 61.688 63.158 0.00 0.00 0.00 4.35
1688 1749 1.826054 CTCCTCGTCCTCGCCAGAT 60.826 63.158 0.00 0.00 36.96 2.90
1731 1792 1.289066 CCTTGGACGACGAGAGCAA 59.711 57.895 0.00 0.00 31.73 3.91
1931 1992 2.280524 TCGAACAAGCCACGTGGG 60.281 61.111 34.58 20.99 40.85 4.61
1979 2040 4.069232 CCGCCGAGAGCTTGGTGA 62.069 66.667 17.02 0.00 45.40 4.02
2048 2109 2.260434 GTTCCACCGACGCTGCTA 59.740 61.111 0.00 0.00 0.00 3.49
2121 2182 1.224069 GCATGGATGACATCGACGGG 61.224 60.000 9.31 1.13 37.84 5.28
2151 2212 0.109597 GCGTTTGTCCTGGCATCAAG 60.110 55.000 0.00 0.00 0.00 3.02
2225 2286 1.026182 TCGTGATGGCCATTGACAGC 61.026 55.000 21.84 6.27 0.00 4.40
2598 2659 0.672401 GCCGCTGGCTGTAAGTACAA 60.672 55.000 11.61 0.00 46.69 2.41
2748 2809 3.618263 GCACTCACATCCTTGAGATCACA 60.618 47.826 7.12 0.00 45.19 3.58
2886 2947 1.869767 GGTTCAGTCACTTCAGTGCTG 59.130 52.381 18.05 18.05 45.25 4.41
2887 2948 1.539065 CGGTTCAGTCACTTCAGTGCT 60.539 52.381 1.74 0.66 45.25 4.40
2933 2994 8.611051 AAAAGTGAACAGAGGGAGTACTATAT 57.389 34.615 0.00 0.00 0.00 0.86
2934 2995 9.710818 ATAAAAGTGAACAGAGGGAGTACTATA 57.289 33.333 0.00 0.00 0.00 1.31
2935 2996 6.936968 AAAAGTGAACAGAGGGAGTACTAT 57.063 37.500 0.00 0.00 0.00 2.12
2936 2997 9.537852 TTATAAAAGTGAACAGAGGGAGTACTA 57.462 33.333 0.00 0.00 0.00 1.82
2937 2998 6.936968 ATAAAAGTGAACAGAGGGAGTACT 57.063 37.500 0.00 0.00 0.00 2.73
2938 2999 8.529476 TCTTATAAAAGTGAACAGAGGGAGTAC 58.471 37.037 0.00 0.00 34.13 2.73
2939 3000 8.529476 GTCTTATAAAAGTGAACAGAGGGAGTA 58.471 37.037 0.00 0.00 34.13 2.59
2940 3001 7.387643 GTCTTATAAAAGTGAACAGAGGGAGT 58.612 38.462 0.00 0.00 34.13 3.85
2941 3002 6.819146 GGTCTTATAAAAGTGAACAGAGGGAG 59.181 42.308 0.00 0.00 34.13 4.30
2942 3003 6.500751 AGGTCTTATAAAAGTGAACAGAGGGA 59.499 38.462 0.00 0.00 34.13 4.20
2943 3004 6.712276 AGGTCTTATAAAAGTGAACAGAGGG 58.288 40.000 0.00 0.00 34.13 4.30
2944 3005 7.878127 TCAAGGTCTTATAAAAGTGAACAGAGG 59.122 37.037 0.00 0.00 34.13 3.69
2945 3006 8.833231 TCAAGGTCTTATAAAAGTGAACAGAG 57.167 34.615 0.00 0.00 34.13 3.35
2946 3007 9.273016 CTTCAAGGTCTTATAAAAGTGAACAGA 57.727 33.333 0.00 0.00 34.13 3.41
2947 3008 9.273016 TCTTCAAGGTCTTATAAAAGTGAACAG 57.727 33.333 0.00 0.00 34.13 3.16
2948 3009 9.052759 GTCTTCAAGGTCTTATAAAAGTGAACA 57.947 33.333 0.00 0.00 34.13 3.18
2949 3010 9.052759 TGTCTTCAAGGTCTTATAAAAGTGAAC 57.947 33.333 0.00 0.00 34.13 3.18
2950 3011 9.793259 ATGTCTTCAAGGTCTTATAAAAGTGAA 57.207 29.630 0.00 0.00 34.13 3.18
2951 3012 9.793259 AATGTCTTCAAGGTCTTATAAAAGTGA 57.207 29.630 0.00 0.00 34.13 3.41
2957 3018 9.436957 GTCTGAAATGTCTTCAAGGTCTTATAA 57.563 33.333 0.00 0.00 0.00 0.98
2958 3019 8.593679 TGTCTGAAATGTCTTCAAGGTCTTATA 58.406 33.333 0.00 0.00 0.00 0.98
2959 3020 7.453393 TGTCTGAAATGTCTTCAAGGTCTTAT 58.547 34.615 0.00 0.00 0.00 1.73
2960 3021 6.826668 TGTCTGAAATGTCTTCAAGGTCTTA 58.173 36.000 0.00 0.00 0.00 2.10
2961 3022 5.684704 TGTCTGAAATGTCTTCAAGGTCTT 58.315 37.500 0.00 0.00 0.00 3.01
2962 3023 5.296151 TGTCTGAAATGTCTTCAAGGTCT 57.704 39.130 0.00 0.00 0.00 3.85
2963 3024 6.566197 ATTGTCTGAAATGTCTTCAAGGTC 57.434 37.500 0.00 0.00 0.00 3.85
2964 3025 7.362401 GCATATTGTCTGAAATGTCTTCAAGGT 60.362 37.037 0.00 0.00 0.00 3.50
2965 3026 6.971184 GCATATTGTCTGAAATGTCTTCAAGG 59.029 38.462 0.00 0.00 0.00 3.61
2966 3027 7.532571 TGCATATTGTCTGAAATGTCTTCAAG 58.467 34.615 0.00 0.00 0.00 3.02
2967 3028 7.451501 TGCATATTGTCTGAAATGTCTTCAA 57.548 32.000 0.00 0.00 0.00 2.69
2968 3029 7.451501 TTGCATATTGTCTGAAATGTCTTCA 57.548 32.000 0.00 0.00 0.00 3.02
2969 3030 8.642020 GTTTTGCATATTGTCTGAAATGTCTTC 58.358 33.333 0.00 0.00 0.00 2.87
2970 3031 8.143193 TGTTTTGCATATTGTCTGAAATGTCTT 58.857 29.630 0.00 0.00 0.00 3.01
2971 3032 7.660112 TGTTTTGCATATTGTCTGAAATGTCT 58.340 30.769 0.00 0.00 0.00 3.41
2972 3033 7.411157 GCTGTTTTGCATATTGTCTGAAATGTC 60.411 37.037 0.00 0.00 0.00 3.06
2973 3034 6.366877 GCTGTTTTGCATATTGTCTGAAATGT 59.633 34.615 0.00 0.00 0.00 2.71
2974 3035 6.183360 GGCTGTTTTGCATATTGTCTGAAATG 60.183 38.462 0.00 0.00 34.04 2.32
2975 3036 5.870978 GGCTGTTTTGCATATTGTCTGAAAT 59.129 36.000 0.00 0.00 34.04 2.17
2976 3037 5.010922 AGGCTGTTTTGCATATTGTCTGAAA 59.989 36.000 0.00 0.00 34.04 2.69
2977 3038 4.523943 AGGCTGTTTTGCATATTGTCTGAA 59.476 37.500 0.00 0.00 34.04 3.02
2978 3039 4.081406 AGGCTGTTTTGCATATTGTCTGA 58.919 39.130 0.00 0.00 34.04 3.27
2979 3040 4.445452 AGGCTGTTTTGCATATTGTCTG 57.555 40.909 0.00 0.00 34.04 3.51
2980 3041 6.780457 AATAGGCTGTTTTGCATATTGTCT 57.220 33.333 0.00 0.00 44.65 3.41
2981 3042 7.545265 TCAAAATAGGCTGTTTTGCATATTGTC 59.455 33.333 32.24 0.00 45.29 3.18
2982 3043 7.385267 TCAAAATAGGCTGTTTTGCATATTGT 58.615 30.769 32.24 5.49 45.29 2.71
2983 3044 7.546667 ACTCAAAATAGGCTGTTTTGCATATTG 59.453 33.333 32.24 21.86 45.29 1.90
2985 3046 7.174107 ACTCAAAATAGGCTGTTTTGCATAT 57.826 32.000 32.24 19.64 43.04 1.78
2986 3047 6.588719 ACTCAAAATAGGCTGTTTTGCATA 57.411 33.333 32.24 20.43 43.04 3.14
2987 3048 5.473066 ACTCAAAATAGGCTGTTTTGCAT 57.527 34.783 32.24 23.33 43.04 3.96
2988 3049 4.935352 ACTCAAAATAGGCTGTTTTGCA 57.065 36.364 32.24 23.09 43.04 4.08
2989 3050 5.049828 ACAACTCAAAATAGGCTGTTTTGC 58.950 37.500 32.24 0.00 43.04 3.68
2990 3051 6.418819 CAGACAACTCAAAATAGGCTGTTTTG 59.581 38.462 31.63 31.63 44.10 2.44
2991 3052 6.321181 TCAGACAACTCAAAATAGGCTGTTTT 59.679 34.615 15.20 15.20 0.00 2.43
2992 3053 5.827797 TCAGACAACTCAAAATAGGCTGTTT 59.172 36.000 3.12 3.12 0.00 2.83
2993 3054 5.376625 TCAGACAACTCAAAATAGGCTGTT 58.623 37.500 0.00 0.00 0.00 3.16
2994 3055 4.973168 TCAGACAACTCAAAATAGGCTGT 58.027 39.130 0.00 0.00 0.00 4.40
2995 3056 5.947228 TTCAGACAACTCAAAATAGGCTG 57.053 39.130 0.00 0.00 0.00 4.85
2996 3057 5.049405 CGTTTCAGACAACTCAAAATAGGCT 60.049 40.000 0.00 0.00 0.00 4.58
2997 3058 5.049680 TCGTTTCAGACAACTCAAAATAGGC 60.050 40.000 0.00 0.00 0.00 3.93
2998 3059 6.202954 AGTCGTTTCAGACAACTCAAAATAGG 59.797 38.462 0.00 0.00 43.24 2.57
2999 3060 7.178712 AGTCGTTTCAGACAACTCAAAATAG 57.821 36.000 0.00 0.00 43.24 1.73
3000 3061 7.548196 AAGTCGTTTCAGACAACTCAAAATA 57.452 32.000 0.00 0.00 43.24 1.40
3001 3062 6.436843 AAGTCGTTTCAGACAACTCAAAAT 57.563 33.333 0.00 0.00 43.24 1.82
3002 3063 5.873179 AAGTCGTTTCAGACAACTCAAAA 57.127 34.783 0.00 0.00 43.24 2.44
3003 3064 5.870433 TGTAAGTCGTTTCAGACAACTCAAA 59.130 36.000 0.00 0.00 43.24 2.69
3004 3065 5.412640 TGTAAGTCGTTTCAGACAACTCAA 58.587 37.500 0.00 0.00 43.24 3.02
3005 3066 5.001237 TGTAAGTCGTTTCAGACAACTCA 57.999 39.130 0.00 0.00 43.24 3.41
3006 3067 5.961395 TTGTAAGTCGTTTCAGACAACTC 57.039 39.130 0.00 0.00 43.24 3.01
3007 3068 6.370718 ACTTTTGTAAGTCGTTTCAGACAACT 59.629 34.615 0.00 0.00 40.60 3.16
3008 3069 6.464834 CACTTTTGTAAGTCGTTTCAGACAAC 59.535 38.462 0.00 0.00 42.67 3.32
3009 3070 6.369340 TCACTTTTGTAAGTCGTTTCAGACAA 59.631 34.615 0.00 0.00 42.67 3.18
3010 3071 5.870433 TCACTTTTGTAAGTCGTTTCAGACA 59.130 36.000 0.00 0.00 42.67 3.41
3011 3072 6.340537 TCACTTTTGTAAGTCGTTTCAGAC 57.659 37.500 0.00 0.00 42.67 3.51
3012 3073 6.454583 CGTTCACTTTTGTAAGTCGTTTCAGA 60.455 38.462 0.00 0.00 42.67 3.27
3013 3074 5.671140 CGTTCACTTTTGTAAGTCGTTTCAG 59.329 40.000 0.00 0.00 42.67 3.02
3014 3075 5.446206 CCGTTCACTTTTGTAAGTCGTTTCA 60.446 40.000 0.00 0.00 42.67 2.69
3015 3076 4.959757 CCGTTCACTTTTGTAAGTCGTTTC 59.040 41.667 0.00 0.00 42.67 2.78
3016 3077 4.630940 TCCGTTCACTTTTGTAAGTCGTTT 59.369 37.500 0.00 0.00 42.67 3.60
3017 3078 4.183101 TCCGTTCACTTTTGTAAGTCGTT 58.817 39.130 0.00 0.00 42.67 3.85
3018 3079 3.784338 TCCGTTCACTTTTGTAAGTCGT 58.216 40.909 0.00 0.00 42.67 4.34
3019 3080 3.183775 CCTCCGTTCACTTTTGTAAGTCG 59.816 47.826 0.00 0.00 42.67 4.18
3020 3081 3.497262 CCCTCCGTTCACTTTTGTAAGTC 59.503 47.826 0.00 0.00 42.67 3.01
3021 3082 3.135167 TCCCTCCGTTCACTTTTGTAAGT 59.865 43.478 0.00 0.00 45.40 2.24
3022 3083 3.735591 TCCCTCCGTTCACTTTTGTAAG 58.264 45.455 0.00 0.00 37.40 2.34
3023 3084 3.135167 ACTCCCTCCGTTCACTTTTGTAA 59.865 43.478 0.00 0.00 0.00 2.41
3024 3085 2.701951 ACTCCCTCCGTTCACTTTTGTA 59.298 45.455 0.00 0.00 0.00 2.41
3025 3086 1.489230 ACTCCCTCCGTTCACTTTTGT 59.511 47.619 0.00 0.00 0.00 2.83
3026 3087 2.256117 ACTCCCTCCGTTCACTTTTG 57.744 50.000 0.00 0.00 0.00 2.44
3027 3088 2.970640 ACTACTCCCTCCGTTCACTTTT 59.029 45.455 0.00 0.00 0.00 2.27
3028 3089 2.606378 ACTACTCCCTCCGTTCACTTT 58.394 47.619 0.00 0.00 0.00 2.66
3029 3090 2.305858 ACTACTCCCTCCGTTCACTT 57.694 50.000 0.00 0.00 0.00 3.16
3030 3091 3.245193 ACTTACTACTCCCTCCGTTCACT 60.245 47.826 0.00 0.00 0.00 3.41
3031 3092 3.087781 ACTTACTACTCCCTCCGTTCAC 58.912 50.000 0.00 0.00 0.00 3.18
3032 3093 3.446442 ACTTACTACTCCCTCCGTTCA 57.554 47.619 0.00 0.00 0.00 3.18
3033 3094 4.015764 AGAACTTACTACTCCCTCCGTTC 58.984 47.826 0.00 0.00 0.00 3.95
3034 3095 4.044946 AGAACTTACTACTCCCTCCGTT 57.955 45.455 0.00 0.00 0.00 4.44
3035 3096 3.735720 AGAACTTACTACTCCCTCCGT 57.264 47.619 0.00 0.00 0.00 4.69
3036 3097 4.381718 CCAAAGAACTTACTACTCCCTCCG 60.382 50.000 0.00 0.00 0.00 4.63
3037 3098 4.531339 ACCAAAGAACTTACTACTCCCTCC 59.469 45.833 0.00 0.00 0.00 4.30
3038 3099 5.741962 ACCAAAGAACTTACTACTCCCTC 57.258 43.478 0.00 0.00 0.00 4.30
3039 3100 7.809880 ATAACCAAAGAACTTACTACTCCCT 57.190 36.000 0.00 0.00 0.00 4.20
3040 3101 8.859236 AAATAACCAAAGAACTTACTACTCCC 57.141 34.615 0.00 0.00 0.00 4.30
3075 3136 3.403038 ACACTTGCAAGCTACTGTTAGG 58.597 45.455 26.27 0.00 0.00 2.69
3119 3180 6.692681 GGAAATCACTAAAGTACATACGCGTA 59.307 38.462 22.94 22.94 0.00 4.42
3143 3204 9.570488 CGTACTAGCTAGCCTATAAAAATTAGG 57.430 37.037 20.91 3.27 39.44 2.69
3271 3338 6.977244 ATTGATATAAGCACTAAGGGGGAT 57.023 37.500 0.00 0.00 0.00 3.85
3313 3487 6.015856 TCTCAAATCCTAAAATTGTCGCCAAA 60.016 34.615 0.00 0.00 33.44 3.28
3314 3488 5.475220 TCTCAAATCCTAAAATTGTCGCCAA 59.525 36.000 0.00 0.00 34.45 4.52
3315 3489 5.007034 TCTCAAATCCTAAAATTGTCGCCA 58.993 37.500 0.00 0.00 0.00 5.69
3325 3499 6.486657 CCCGATTAGCAATCTCAAATCCTAAA 59.513 38.462 7.12 0.00 35.73 1.85
3380 3554 0.304705 CATCCGTGGAATTGTAGCGC 59.695 55.000 0.00 0.00 0.00 5.92
3383 3557 3.493350 CCTCCTCATCCGTGGAATTGTAG 60.493 52.174 0.00 0.00 34.44 2.74
3394 3568 1.542108 GGCTGATTTCCTCCTCATCCG 60.542 57.143 0.00 0.00 0.00 4.18
3434 3608 1.428912 AGAAGGCCAGGATTGGTTTCA 59.571 47.619 5.01 0.00 46.80 2.69
3442 3616 0.851469 ATGCATGAGAAGGCCAGGAT 59.149 50.000 5.01 0.00 0.00 3.24
3447 3621 2.756760 TCTTCAAATGCATGAGAAGGCC 59.243 45.455 27.63 0.00 38.35 5.19
3450 3624 6.253727 GCTCAAATCTTCAAATGCATGAGAAG 59.746 38.462 24.76 24.76 38.98 2.85
3473 3647 6.460103 ACCCATATTCTTGATCTAATGGCT 57.540 37.500 0.00 0.00 33.94 4.75
3503 3677 9.588096 AACTAAGTTTTGATCCAAACTATTCCT 57.412 29.630 21.49 10.78 32.79 3.36
3507 3681 9.893305 CGAAAACTAAGTTTTGATCCAAACTAT 57.107 29.630 21.49 14.94 44.33 2.12
3508 3682 8.347035 CCGAAAACTAAGTTTTGATCCAAACTA 58.653 33.333 21.49 11.32 44.33 2.24
3509 3683 7.147966 ACCGAAAACTAAGTTTTGATCCAAACT 60.148 33.333 16.96 16.96 44.33 2.66
3510 3684 6.976349 ACCGAAAACTAAGTTTTGATCCAAAC 59.024 34.615 13.20 13.20 44.33 2.93
3511 3685 7.102847 ACCGAAAACTAAGTTTTGATCCAAA 57.897 32.000 0.00 0.00 44.33 3.28
3512 3686 6.702716 ACCGAAAACTAAGTTTTGATCCAA 57.297 33.333 0.00 0.00 44.33 3.53
3513 3687 6.702716 AACCGAAAACTAAGTTTTGATCCA 57.297 33.333 0.00 0.00 44.33 3.41
3514 3688 6.419710 CCAAACCGAAAACTAAGTTTTGATCC 59.580 38.462 0.00 0.00 44.33 3.36
3515 3689 6.976349 ACCAAACCGAAAACTAAGTTTTGATC 59.024 34.615 0.00 0.00 44.33 2.92
3516 3690 6.869695 ACCAAACCGAAAACTAAGTTTTGAT 58.130 32.000 0.00 0.00 44.33 2.57
3517 3691 6.270156 ACCAAACCGAAAACTAAGTTTTGA 57.730 33.333 0.00 0.00 44.33 2.69
3518 3692 6.954616 AACCAAACCGAAAACTAAGTTTTG 57.045 33.333 0.00 0.37 44.33 2.44
3519 3693 7.966246 AAAACCAAACCGAAAACTAAGTTTT 57.034 28.000 0.00 0.00 46.51 2.43
3520 3694 7.656542 TCAAAAACCAAACCGAAAACTAAGTTT 59.343 29.630 0.00 0.00 37.34 2.66
3521 3695 7.153315 TCAAAAACCAAACCGAAAACTAAGTT 58.847 30.769 0.00 0.00 0.00 2.66
3522 3696 6.689554 TCAAAAACCAAACCGAAAACTAAGT 58.310 32.000 0.00 0.00 0.00 2.24
3523 3697 7.764695 ATCAAAAACCAAACCGAAAACTAAG 57.235 32.000 0.00 0.00 0.00 2.18
3524 3698 8.443937 CAAATCAAAAACCAAACCGAAAACTAA 58.556 29.630 0.00 0.00 0.00 2.24
3525 3699 7.064728 CCAAATCAAAAACCAAACCGAAAACTA 59.935 33.333 0.00 0.00 0.00 2.24
3526 3700 6.128145 CCAAATCAAAAACCAAACCGAAAACT 60.128 34.615 0.00 0.00 0.00 2.66
3527 3701 6.024664 CCAAATCAAAAACCAAACCGAAAAC 58.975 36.000 0.00 0.00 0.00 2.43
3528 3702 5.705905 ACCAAATCAAAAACCAAACCGAAAA 59.294 32.000 0.00 0.00 0.00 2.29
3529 3703 5.246307 ACCAAATCAAAAACCAAACCGAAA 58.754 33.333 0.00 0.00 0.00 3.46
3530 3704 4.833390 ACCAAATCAAAAACCAAACCGAA 58.167 34.783 0.00 0.00 0.00 4.30
3531 3705 4.160626 AGACCAAATCAAAAACCAAACCGA 59.839 37.500 0.00 0.00 0.00 4.69
3532 3706 4.438148 AGACCAAATCAAAAACCAAACCG 58.562 39.130 0.00 0.00 0.00 4.44
3533 3707 5.293324 GTGAGACCAAATCAAAAACCAAACC 59.707 40.000 0.00 0.00 0.00 3.27
3534 3708 6.106003 AGTGAGACCAAATCAAAAACCAAAC 58.894 36.000 0.00 0.00 0.00 2.93
3535 3709 6.293004 AGTGAGACCAAATCAAAAACCAAA 57.707 33.333 0.00 0.00 0.00 3.28
3536 3710 5.930837 AGTGAGACCAAATCAAAAACCAA 57.069 34.783 0.00 0.00 0.00 3.67
3537 3711 6.126409 ACTAGTGAGACCAAATCAAAAACCA 58.874 36.000 0.00 0.00 0.00 3.67
3538 3712 6.635030 ACTAGTGAGACCAAATCAAAAACC 57.365 37.500 0.00 0.00 0.00 3.27
3539 3713 7.435192 CCAAACTAGTGAGACCAAATCAAAAAC 59.565 37.037 0.00 0.00 0.00 2.43
3540 3714 7.123547 ACCAAACTAGTGAGACCAAATCAAAAA 59.876 33.333 0.00 0.00 0.00 1.94
3541 3715 6.605594 ACCAAACTAGTGAGACCAAATCAAAA 59.394 34.615 0.00 0.00 0.00 2.44
3542 3716 6.126409 ACCAAACTAGTGAGACCAAATCAAA 58.874 36.000 0.00 0.00 0.00 2.69
3543 3717 5.690865 ACCAAACTAGTGAGACCAAATCAA 58.309 37.500 0.00 0.00 0.00 2.57
3544 3718 5.071788 AGACCAAACTAGTGAGACCAAATCA 59.928 40.000 0.00 0.00 0.00 2.57
3545 3719 5.552178 AGACCAAACTAGTGAGACCAAATC 58.448 41.667 0.00 0.00 0.00 2.17
3546 3720 5.513267 GGAGACCAAACTAGTGAGACCAAAT 60.513 44.000 0.00 0.00 0.00 2.32
3547 3721 4.202326 GGAGACCAAACTAGTGAGACCAAA 60.202 45.833 0.00 0.00 0.00 3.28
3548 3722 3.323979 GGAGACCAAACTAGTGAGACCAA 59.676 47.826 0.00 0.00 0.00 3.67
3549 3723 2.897969 GGAGACCAAACTAGTGAGACCA 59.102 50.000 0.00 0.00 0.00 4.02
3550 3724 2.897969 TGGAGACCAAACTAGTGAGACC 59.102 50.000 0.00 0.00 0.00 3.85
3551 3725 3.574826 AGTGGAGACCAAACTAGTGAGAC 59.425 47.826 0.00 0.00 34.18 3.36
3552 3726 3.574396 CAGTGGAGACCAAACTAGTGAGA 59.426 47.826 0.00 0.00 34.18 3.27
3553 3727 3.306364 CCAGTGGAGACCAAACTAGTGAG 60.306 52.174 1.68 0.00 34.18 3.51
3554 3728 2.632996 CCAGTGGAGACCAAACTAGTGA 59.367 50.000 1.68 0.00 34.18 3.41
3555 3729 2.632996 TCCAGTGGAGACCAAACTAGTG 59.367 50.000 8.12 0.00 34.18 2.74
3556 3730 2.972348 TCCAGTGGAGACCAAACTAGT 58.028 47.619 8.12 0.00 34.18 2.57
3557 3731 4.559862 AATCCAGTGGAGACCAAACTAG 57.440 45.455 18.69 0.00 34.18 2.57
3558 3732 4.993705 AAATCCAGTGGAGACCAAACTA 57.006 40.909 18.69 0.00 34.18 2.24
3559 3733 3.884037 AAATCCAGTGGAGACCAAACT 57.116 42.857 18.69 0.00 34.18 2.66
3560 3734 4.906618 TCTAAATCCAGTGGAGACCAAAC 58.093 43.478 18.69 0.00 34.18 2.93
3561 3735 5.500234 CATCTAAATCCAGTGGAGACCAAA 58.500 41.667 18.69 1.79 34.18 3.28
3562 3736 4.080356 CCATCTAAATCCAGTGGAGACCAA 60.080 45.833 18.69 3.45 34.18 3.67
3563 3737 3.455910 CCATCTAAATCCAGTGGAGACCA 59.544 47.826 18.69 0.50 34.05 4.02
3564 3738 3.711704 TCCATCTAAATCCAGTGGAGACC 59.288 47.826 18.69 0.00 34.05 3.85
3565 3739 4.162320 TGTCCATCTAAATCCAGTGGAGAC 59.838 45.833 18.69 15.95 39.47 3.36
3566 3740 4.361783 TGTCCATCTAAATCCAGTGGAGA 58.638 43.478 18.69 9.65 39.47 3.71
3567 3741 4.760530 TGTCCATCTAAATCCAGTGGAG 57.239 45.455 18.69 3.76 39.47 3.86
3568 3742 5.222027 TGTTTGTCCATCTAAATCCAGTGGA 60.222 40.000 15.88 15.88 36.66 4.02
3569 3743 5.009631 TGTTTGTCCATCTAAATCCAGTGG 58.990 41.667 1.40 1.40 0.00 4.00
3570 3744 6.573664 TTGTTTGTCCATCTAAATCCAGTG 57.426 37.500 0.00 0.00 0.00 3.66
3571 3745 7.362056 CGAATTGTTTGTCCATCTAAATCCAGT 60.362 37.037 0.00 0.00 0.00 4.00
3572 3746 6.968904 CGAATTGTTTGTCCATCTAAATCCAG 59.031 38.462 0.00 0.00 0.00 3.86
3573 3747 6.127758 CCGAATTGTTTGTCCATCTAAATCCA 60.128 38.462 0.00 0.00 0.00 3.41
3574 3748 6.127730 ACCGAATTGTTTGTCCATCTAAATCC 60.128 38.462 0.00 0.00 0.00 3.01
3575 3749 6.852664 ACCGAATTGTTTGTCCATCTAAATC 58.147 36.000 0.00 0.00 0.00 2.17
3576 3750 6.834168 ACCGAATTGTTTGTCCATCTAAAT 57.166 33.333 0.00 0.00 0.00 1.40
3577 3751 6.566942 CGAACCGAATTGTTTGTCCATCTAAA 60.567 38.462 0.00 0.00 0.00 1.85
3578 3752 5.106869 CGAACCGAATTGTTTGTCCATCTAA 60.107 40.000 0.00 0.00 0.00 2.10
3579 3753 4.390603 CGAACCGAATTGTTTGTCCATCTA 59.609 41.667 0.00 0.00 0.00 1.98
3580 3754 3.188460 CGAACCGAATTGTTTGTCCATCT 59.812 43.478 0.00 0.00 0.00 2.90
3581 3755 3.488489 CGAACCGAATTGTTTGTCCATC 58.512 45.455 0.00 0.00 0.00 3.51
3582 3756 2.227865 CCGAACCGAATTGTTTGTCCAT 59.772 45.455 0.00 0.00 0.00 3.41
3583 3757 1.604755 CCGAACCGAATTGTTTGTCCA 59.395 47.619 0.00 0.00 0.00 4.02
3584 3758 1.605232 ACCGAACCGAATTGTTTGTCC 59.395 47.619 0.00 0.00 0.00 4.02
3585 3759 3.343380 AACCGAACCGAATTGTTTGTC 57.657 42.857 0.00 0.00 0.00 3.18
3586 3760 3.440228 CAAACCGAACCGAATTGTTTGT 58.560 40.909 0.00 0.00 40.34 2.83
3587 3761 2.792116 CCAAACCGAACCGAATTGTTTG 59.208 45.455 0.00 0.00 43.21 2.93
3588 3762 2.223852 CCCAAACCGAACCGAATTGTTT 60.224 45.455 0.00 0.00 0.00 2.83
3589 3763 1.338655 CCCAAACCGAACCGAATTGTT 59.661 47.619 0.00 0.00 0.00 2.83
3590 3764 0.955905 CCCAAACCGAACCGAATTGT 59.044 50.000 0.00 0.00 0.00 2.71
3591 3765 0.955905 ACCCAAACCGAACCGAATTG 59.044 50.000 0.00 0.00 0.00 2.32
3592 3766 1.338655 CAACCCAAACCGAACCGAATT 59.661 47.619 0.00 0.00 0.00 2.17
3593 3767 0.955905 CAACCCAAACCGAACCGAAT 59.044 50.000 0.00 0.00 0.00 3.34
3594 3768 0.394080 ACAACCCAAACCGAACCGAA 60.394 50.000 0.00 0.00 0.00 4.30
3595 3769 1.096386 CACAACCCAAACCGAACCGA 61.096 55.000 0.00 0.00 0.00 4.69
3596 3770 1.357334 CACAACCCAAACCGAACCG 59.643 57.895 0.00 0.00 0.00 4.44
3597 3771 1.737201 CCACAACCCAAACCGAACC 59.263 57.895 0.00 0.00 0.00 3.62
3598 3772 1.066752 GCCACAACCCAAACCGAAC 59.933 57.895 0.00 0.00 0.00 3.95
3599 3773 0.183014 TAGCCACAACCCAAACCGAA 59.817 50.000 0.00 0.00 0.00 4.30
3600 3774 0.183014 TTAGCCACAACCCAAACCGA 59.817 50.000 0.00 0.00 0.00 4.69
3601 3775 1.253100 ATTAGCCACAACCCAAACCG 58.747 50.000 0.00 0.00 0.00 4.44
3602 3776 3.366577 CGTTATTAGCCACAACCCAAACC 60.367 47.826 0.00 0.00 0.00 3.27
3603 3777 3.366577 CCGTTATTAGCCACAACCCAAAC 60.367 47.826 0.00 0.00 0.00 2.93
3604 3778 2.820787 CCGTTATTAGCCACAACCCAAA 59.179 45.455 0.00 0.00 0.00 3.28
3605 3779 2.040012 TCCGTTATTAGCCACAACCCAA 59.960 45.455 0.00 0.00 0.00 4.12
3606 3780 1.629353 TCCGTTATTAGCCACAACCCA 59.371 47.619 0.00 0.00 0.00 4.51
3607 3781 2.406596 TCCGTTATTAGCCACAACCC 57.593 50.000 0.00 0.00 0.00 4.11
3608 3782 3.066203 CCAATCCGTTATTAGCCACAACC 59.934 47.826 0.00 0.00 0.00 3.77
3609 3783 3.942748 TCCAATCCGTTATTAGCCACAAC 59.057 43.478 0.00 0.00 0.00 3.32
3610 3784 4.223556 TCCAATCCGTTATTAGCCACAA 57.776 40.909 0.00 0.00 0.00 3.33
3611 3785 3.916359 TCCAATCCGTTATTAGCCACA 57.084 42.857 0.00 0.00 0.00 4.17
3612 3786 5.408604 CACTATCCAATCCGTTATTAGCCAC 59.591 44.000 0.00 0.00 0.00 5.01
3613 3787 5.071250 ACACTATCCAATCCGTTATTAGCCA 59.929 40.000 0.00 0.00 0.00 4.75
3614 3788 5.548406 ACACTATCCAATCCGTTATTAGCC 58.452 41.667 0.00 0.00 0.00 3.93
3615 3789 6.704493 TCAACACTATCCAATCCGTTATTAGC 59.296 38.462 0.00 0.00 0.00 3.09
3616 3790 7.926555 ACTCAACACTATCCAATCCGTTATTAG 59.073 37.037 0.00 0.00 0.00 1.73
3617 3791 7.788026 ACTCAACACTATCCAATCCGTTATTA 58.212 34.615 0.00 0.00 0.00 0.98
3618 3792 6.650120 ACTCAACACTATCCAATCCGTTATT 58.350 36.000 0.00 0.00 0.00 1.40
3619 3793 6.235231 ACTCAACACTATCCAATCCGTTAT 57.765 37.500 0.00 0.00 0.00 1.89
3620 3794 5.670792 ACTCAACACTATCCAATCCGTTA 57.329 39.130 0.00 0.00 0.00 3.18
3621 3795 4.553330 ACTCAACACTATCCAATCCGTT 57.447 40.909 0.00 0.00 0.00 4.44
3622 3796 5.871396 ATACTCAACACTATCCAATCCGT 57.129 39.130 0.00 0.00 0.00 4.69
3623 3797 7.872993 ACATTATACTCAACACTATCCAATCCG 59.127 37.037 0.00 0.00 0.00 4.18
3806 3988 1.203052 CGGCGTCTAGGGTTTAGAACA 59.797 52.381 0.00 0.00 0.00 3.18
4100 4288 3.766691 GAAGTAGCCGGCCGGTCA 61.767 66.667 42.53 28.72 37.65 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.