Multiple sequence alignment - TraesCS2B01G431800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G431800 chr2B 100.000 2930 0 0 1 2930 620862711 620859782 0.000000e+00 5411.0
1 TraesCS2B01G431800 chr2B 98.561 278 4 0 296 573 164086622 164086345 2.620000e-135 492.0
2 TraesCS2B01G431800 chr2D 88.776 1871 84 43 574 2375 524932952 524931139 0.000000e+00 2176.0
3 TraesCS2B01G431800 chr2D 85.256 312 14 14 1 298 524933242 524932949 2.860000e-75 292.0
4 TraesCS2B01G431800 chr2D 90.052 191 9 3 2518 2704 524930999 524930815 3.770000e-59 239.0
5 TraesCS2B01G431800 chr2A 84.643 1973 107 73 588 2495 670315511 670313670 0.000000e+00 1784.0
6 TraesCS2B01G431800 chr2A 93.162 117 3 2 4 120 670315776 670315665 1.810000e-37 167.0
7 TraesCS2B01G431800 chr2A 81.871 171 23 3 2742 2912 670313572 670313410 1.420000e-28 137.0
8 TraesCS2B01G431800 chr2A 91.667 84 6 1 216 298 670315608 670315525 6.640000e-22 115.0
9 TraesCS2B01G431800 chrUn 99.644 281 1 0 296 576 40187665 40187385 5.600000e-142 514.0
10 TraesCS2B01G431800 chr1A 99.639 277 1 0 295 571 583816551 583816275 9.370000e-140 507.0
11 TraesCS2B01G431800 chr1A 98.556 277 4 0 295 571 521619951 521620227 9.440000e-135 490.0
12 TraesCS2B01G431800 chr1A 98.545 275 4 0 296 570 406174760 406175034 1.220000e-133 486.0
13 TraesCS2B01G431800 chr6A 99.281 278 2 0 296 573 50270111 50269834 1.210000e-138 503.0
14 TraesCS2B01G431800 chr6A 76.514 958 146 52 993 1903 461644941 461645866 1.600000e-122 449.0
15 TraesCS2B01G431800 chr3B 99.281 278 2 0 298 575 813141023 813141300 1.210000e-138 503.0
16 TraesCS2B01G431800 chr5B 99.635 274 1 0 298 571 9012357 9012084 4.360000e-138 501.0
17 TraesCS2B01G431800 chr7A 97.895 285 6 0 290 574 19268539 19268823 7.290000e-136 494.0
18 TraesCS2B01G431800 chr6D 75.833 960 152 53 993 1903 324248449 324249377 5.840000e-112 414.0
19 TraesCS2B01G431800 chr6B 75.574 958 155 56 993 1903 499578644 499577719 1.640000e-107 399.0
20 TraesCS2B01G431800 chr1D 90.625 64 6 0 1516 1579 300025613 300025550 5.200000e-13 86.1
21 TraesCS2B01G431800 chr1B 90.625 64 6 0 1516 1579 404897886 404897823 5.200000e-13 86.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G431800 chr2B 620859782 620862711 2929 True 5411.000000 5411 100.00000 1 2930 1 chr2B.!!$R2 2929
1 TraesCS2B01G431800 chr2D 524930815 524933242 2427 True 902.333333 2176 88.02800 1 2704 3 chr2D.!!$R1 2703
2 TraesCS2B01G431800 chr2A 670313410 670315776 2366 True 550.750000 1784 87.83575 4 2912 4 chr2A.!!$R1 2908
3 TraesCS2B01G431800 chr6A 461644941 461645866 925 False 449.000000 449 76.51400 993 1903 1 chr6A.!!$F1 910
4 TraesCS2B01G431800 chr6D 324248449 324249377 928 False 414.000000 414 75.83300 993 1903 1 chr6D.!!$F1 910
5 TraesCS2B01G431800 chr6B 499577719 499578644 925 True 399.000000 399 75.57400 993 1903 1 chr6B.!!$R1 910

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
524 568 0.040351 CTCTCTCCTCCACCTCACCA 59.96 60.0 0.0 0.0 0.0 4.17 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2518 2767 0.105039 GAAAGGAGGCGATCACCGAT 59.895 55.0 0.0 0.0 41.76 4.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 42 2.905415 TGGATGGATGGGAATATGGC 57.095 50.000 0.00 0.00 0.00 4.40
42 43 1.358787 TGGATGGATGGGAATATGGCC 59.641 52.381 0.00 0.00 0.00 5.36
43 44 1.342374 GGATGGATGGGAATATGGCCC 60.342 57.143 0.00 6.92 46.22 5.80
48 49 2.931921 GGGAATATGGCCCGGGTT 59.068 61.111 24.63 7.86 35.50 4.11
93 94 3.138304 GTCATATTGCGCAAGTCCCATA 58.862 45.455 28.62 14.78 41.68 2.74
132 133 3.144506 GCCATGTGCTGATGCTAATAGT 58.855 45.455 0.00 0.00 40.48 2.12
133 134 4.318332 GCCATGTGCTGATGCTAATAGTA 58.682 43.478 0.00 0.00 40.48 1.82
134 135 4.756642 GCCATGTGCTGATGCTAATAGTAA 59.243 41.667 0.00 0.00 40.48 2.24
135 136 5.413833 GCCATGTGCTGATGCTAATAGTAAT 59.586 40.000 0.00 0.00 40.48 1.89
136 137 6.595326 GCCATGTGCTGATGCTAATAGTAATA 59.405 38.462 0.00 0.00 40.48 0.98
137 138 7.201591 GCCATGTGCTGATGCTAATAGTAATAG 60.202 40.741 0.00 0.00 40.48 1.73
181 188 6.038997 AGAGTAATAATGCCCGGTATTCTC 57.961 41.667 3.72 5.46 0.00 2.87
185 192 4.884257 TGCCCGGTATTCTCGCGC 62.884 66.667 0.00 0.00 32.76 6.86
203 217 1.135139 CGCTGACAGTAGGCACATACT 59.865 52.381 3.99 0.00 36.41 2.12
280 324 7.203218 GGTAACAAATAATGGCTTGATTCCTC 58.797 38.462 0.00 0.00 0.00 3.71
281 325 7.068716 GGTAACAAATAATGGCTTGATTCCTCT 59.931 37.037 0.00 0.00 0.00 3.69
283 327 6.870769 ACAAATAATGGCTTGATTCCTCTTG 58.129 36.000 0.00 0.00 0.00 3.02
288 332 2.305635 TGGCTTGATTCCTCTTGCTACA 59.694 45.455 0.00 0.00 0.00 2.74
292 336 5.397326 GCTTGATTCCTCTTGCTACAAAAG 58.603 41.667 0.00 0.00 0.00 2.27
293 337 5.182001 GCTTGATTCCTCTTGCTACAAAAGA 59.818 40.000 0.00 0.00 32.80 2.52
294 338 6.622462 GCTTGATTCCTCTTGCTACAAAAGAG 60.622 42.308 6.26 6.26 46.78 2.85
295 339 5.869579 TGATTCCTCTTGCTACAAAAGAGT 58.130 37.500 11.18 0.00 46.12 3.24
296 340 7.004555 TGATTCCTCTTGCTACAAAAGAGTA 57.995 36.000 11.18 1.54 46.12 2.59
298 342 7.604164 TGATTCCTCTTGCTACAAAAGAGTAAG 59.396 37.037 11.18 0.00 46.12 2.34
299 343 5.794894 TCCTCTTGCTACAAAAGAGTAAGG 58.205 41.667 11.18 0.00 46.12 2.69
300 344 4.938226 CCTCTTGCTACAAAAGAGTAAGGG 59.062 45.833 11.18 0.00 46.12 3.95
302 346 3.780804 TGCTACAAAAGAGTAAGGGCA 57.219 42.857 0.00 0.00 0.00 5.36
303 347 4.301072 TGCTACAAAAGAGTAAGGGCAT 57.699 40.909 0.00 0.00 0.00 4.40
304 348 4.009675 TGCTACAAAAGAGTAAGGGCATG 58.990 43.478 0.00 0.00 0.00 4.06
305 349 4.010349 GCTACAAAAGAGTAAGGGCATGT 58.990 43.478 0.00 0.00 0.00 3.21
306 350 5.183228 GCTACAAAAGAGTAAGGGCATGTA 58.817 41.667 0.00 0.00 0.00 2.29
307 351 5.064834 GCTACAAAAGAGTAAGGGCATGTAC 59.935 44.000 0.00 0.00 0.00 2.90
308 352 4.980573 ACAAAAGAGTAAGGGCATGTACA 58.019 39.130 0.00 0.00 0.00 2.90
309 353 5.381757 ACAAAAGAGTAAGGGCATGTACAA 58.618 37.500 0.00 0.00 0.00 2.41
310 354 6.010219 ACAAAAGAGTAAGGGCATGTACAAT 58.990 36.000 0.00 0.00 0.00 2.71
311 355 6.071952 ACAAAAGAGTAAGGGCATGTACAATG 60.072 38.462 0.00 0.12 0.00 2.82
312 356 4.156455 AGAGTAAGGGCATGTACAATGG 57.844 45.455 0.00 0.00 0.00 3.16
313 357 3.523564 AGAGTAAGGGCATGTACAATGGT 59.476 43.478 0.00 0.00 0.00 3.55
314 358 4.018415 AGAGTAAGGGCATGTACAATGGTT 60.018 41.667 0.00 0.00 0.00 3.67
315 359 4.016444 AGTAAGGGCATGTACAATGGTTG 58.984 43.478 0.00 0.00 0.00 3.77
316 360 2.897271 AGGGCATGTACAATGGTTGA 57.103 45.000 0.00 0.00 0.00 3.18
317 361 3.386932 AGGGCATGTACAATGGTTGAT 57.613 42.857 0.00 0.00 0.00 2.57
318 362 4.518278 AGGGCATGTACAATGGTTGATA 57.482 40.909 0.00 0.00 0.00 2.15
319 363 4.464008 AGGGCATGTACAATGGTTGATAG 58.536 43.478 0.00 0.00 0.00 2.08
320 364 3.569701 GGGCATGTACAATGGTTGATAGG 59.430 47.826 0.00 0.00 0.00 2.57
321 365 4.460263 GGCATGTACAATGGTTGATAGGA 58.540 43.478 0.00 0.00 0.00 2.94
322 366 4.275936 GGCATGTACAATGGTTGATAGGAC 59.724 45.833 0.00 0.00 0.00 3.85
323 367 4.881273 GCATGTACAATGGTTGATAGGACA 59.119 41.667 0.00 0.00 0.00 4.02
324 368 5.008019 GCATGTACAATGGTTGATAGGACAG 59.992 44.000 0.00 0.00 0.00 3.51
325 369 5.755409 TGTACAATGGTTGATAGGACAGT 57.245 39.130 0.00 0.00 0.00 3.55
326 370 5.730550 TGTACAATGGTTGATAGGACAGTC 58.269 41.667 0.00 0.00 0.00 3.51
327 371 5.483937 TGTACAATGGTTGATAGGACAGTCT 59.516 40.000 0.00 0.00 0.00 3.24
328 372 5.505181 ACAATGGTTGATAGGACAGTCTT 57.495 39.130 0.00 0.00 0.00 3.01
329 373 6.620877 ACAATGGTTGATAGGACAGTCTTA 57.379 37.500 0.00 0.00 0.00 2.10
330 374 7.200434 ACAATGGTTGATAGGACAGTCTTAT 57.800 36.000 4.88 4.88 0.00 1.73
331 375 7.275920 ACAATGGTTGATAGGACAGTCTTATC 58.724 38.462 20.82 20.82 36.38 1.75
332 376 7.126421 ACAATGGTTGATAGGACAGTCTTATCT 59.874 37.037 25.37 9.07 36.68 1.98
333 377 7.682787 ATGGTTGATAGGACAGTCTTATCTT 57.317 36.000 25.37 9.23 36.68 2.40
334 378 8.783660 ATGGTTGATAGGACAGTCTTATCTTA 57.216 34.615 25.37 15.05 36.68 2.10
335 379 8.603898 TGGTTGATAGGACAGTCTTATCTTAA 57.396 34.615 25.37 14.43 36.68 1.85
336 380 8.696374 TGGTTGATAGGACAGTCTTATCTTAAG 58.304 37.037 25.37 0.00 36.68 1.85
337 381 8.697292 GGTTGATAGGACAGTCTTATCTTAAGT 58.303 37.037 25.37 0.00 36.68 2.24
338 382 9.738832 GTTGATAGGACAGTCTTATCTTAAGTC 57.261 37.037 25.37 7.10 36.68 3.01
339 383 9.702253 TTGATAGGACAGTCTTATCTTAAGTCT 57.298 33.333 25.37 4.13 36.68 3.24
340 384 9.702253 TGATAGGACAGTCTTATCTTAAGTCTT 57.298 33.333 25.37 0.00 36.68 3.01
341 385 9.959749 GATAGGACAGTCTTATCTTAAGTCTTG 57.040 37.037 20.49 0.00 33.99 3.02
342 386 6.635755 AGGACAGTCTTATCTTAAGTCTTGC 58.364 40.000 1.63 0.00 0.00 4.01
343 387 6.211584 AGGACAGTCTTATCTTAAGTCTTGCA 59.788 38.462 1.63 0.00 0.00 4.08
344 388 7.044798 GGACAGTCTTATCTTAAGTCTTGCAT 58.955 38.462 1.63 0.00 0.00 3.96
345 389 7.010923 GGACAGTCTTATCTTAAGTCTTGCATG 59.989 40.741 1.63 0.00 0.00 4.06
346 390 7.390027 ACAGTCTTATCTTAAGTCTTGCATGT 58.610 34.615 1.63 0.00 0.00 3.21
347 391 8.531982 ACAGTCTTATCTTAAGTCTTGCATGTA 58.468 33.333 1.63 0.00 0.00 2.29
348 392 9.371136 CAGTCTTATCTTAAGTCTTGCATGTAA 57.629 33.333 1.63 0.00 0.00 2.41
360 404 8.430801 AGTCTTGCATGTAATTTAGAGATGAC 57.569 34.615 0.00 0.00 0.00 3.06
361 405 8.043113 AGTCTTGCATGTAATTTAGAGATGACA 58.957 33.333 0.00 0.00 0.00 3.58
362 406 8.668353 GTCTTGCATGTAATTTAGAGATGACAA 58.332 33.333 0.00 0.00 0.00 3.18
363 407 9.230122 TCTTGCATGTAATTTAGAGATGACAAA 57.770 29.630 0.00 0.00 0.00 2.83
364 408 9.844790 CTTGCATGTAATTTAGAGATGACAAAA 57.155 29.630 0.00 0.00 0.00 2.44
395 439 7.676947 TGTCTACAATGGGTTATATCTTAGCC 58.323 38.462 0.00 0.00 0.00 3.93
396 440 7.512746 TGTCTACAATGGGTTATATCTTAGCCT 59.487 37.037 0.00 0.00 33.15 4.58
397 441 8.376270 GTCTACAATGGGTTATATCTTAGCCTT 58.624 37.037 0.00 0.00 33.15 4.35
398 442 9.610104 TCTACAATGGGTTATATCTTAGCCTTA 57.390 33.333 0.00 0.00 33.15 2.69
401 445 9.117223 ACAATGGGTTATATCTTAGCCTTATCT 57.883 33.333 0.00 0.00 33.15 1.98
402 446 9.965902 CAATGGGTTATATCTTAGCCTTATCTT 57.034 33.333 0.00 0.00 33.15 2.40
404 448 8.736097 TGGGTTATATCTTAGCCTTATCTTCA 57.264 34.615 0.00 0.00 33.15 3.02
405 449 9.166222 TGGGTTATATCTTAGCCTTATCTTCAA 57.834 33.333 0.00 0.00 33.15 2.69
443 487 9.308000 TCCTTAAAATATGGTGAGACAAATTGT 57.692 29.630 0.00 0.00 0.00 2.71
444 488 9.357652 CCTTAAAATATGGTGAGACAAATTGTG 57.642 33.333 2.20 0.00 0.00 3.33
445 489 8.755696 TTAAAATATGGTGAGACAAATTGTGC 57.244 30.769 2.20 0.00 0.00 4.57
446 490 6.594788 AAATATGGTGAGACAAATTGTGCT 57.405 33.333 2.20 0.36 0.00 4.40
447 491 7.701539 AAATATGGTGAGACAAATTGTGCTA 57.298 32.000 2.20 0.00 0.00 3.49
448 492 7.701539 AATATGGTGAGACAAATTGTGCTAA 57.298 32.000 2.20 0.00 0.00 3.09
449 493 5.633830 ATGGTGAGACAAATTGTGCTAAG 57.366 39.130 2.20 0.00 0.00 2.18
450 494 4.713553 TGGTGAGACAAATTGTGCTAAGA 58.286 39.130 2.20 0.00 0.00 2.10
451 495 4.756642 TGGTGAGACAAATTGTGCTAAGAG 59.243 41.667 2.20 0.00 0.00 2.85
452 496 4.997395 GGTGAGACAAATTGTGCTAAGAGA 59.003 41.667 2.20 0.00 0.00 3.10
453 497 5.645497 GGTGAGACAAATTGTGCTAAGAGAT 59.355 40.000 2.20 0.00 0.00 2.75
454 498 6.183360 GGTGAGACAAATTGTGCTAAGAGATC 60.183 42.308 2.20 0.00 0.00 2.75
455 499 6.369890 GTGAGACAAATTGTGCTAAGAGATCA 59.630 38.462 2.20 0.00 0.00 2.92
456 500 7.065563 GTGAGACAAATTGTGCTAAGAGATCAT 59.934 37.037 2.20 0.00 0.00 2.45
457 501 7.279536 TGAGACAAATTGTGCTAAGAGATCATC 59.720 37.037 2.20 0.00 0.00 2.92
458 502 7.337167 AGACAAATTGTGCTAAGAGATCATCT 58.663 34.615 2.20 0.00 41.27 2.90
459 503 7.495279 AGACAAATTGTGCTAAGAGATCATCTC 59.505 37.037 6.55 6.55 43.70 2.75
493 537 9.746457 ATCTTAAATAAGAGAAGACAAGCCTTT 57.254 29.630 8.68 0.00 44.67 3.11
494 538 9.574516 TCTTAAATAAGAGAAGACAAGCCTTTT 57.425 29.630 0.00 0.00 37.40 2.27
495 539 9.833182 CTTAAATAAGAGAAGACAAGCCTTTTC 57.167 33.333 0.00 0.00 35.33 2.29
496 540 9.574516 TTAAATAAGAGAAGACAAGCCTTTTCT 57.425 29.630 0.00 0.00 38.69 2.52
497 541 8.470657 AAATAAGAGAAGACAAGCCTTTTCTT 57.529 30.769 5.57 5.57 44.56 2.52
498 542 9.574516 AAATAAGAGAAGACAAGCCTTTTCTTA 57.425 29.630 5.86 14.67 45.53 2.10
500 544 7.446001 AAGAGAAGACAAGCCTTTTCTTATG 57.554 36.000 5.29 0.00 42.29 1.90
501 545 6.773638 AGAGAAGACAAGCCTTTTCTTATGA 58.226 36.000 5.29 0.00 35.01 2.15
502 546 6.878389 AGAGAAGACAAGCCTTTTCTTATGAG 59.122 38.462 5.29 0.00 35.01 2.90
503 547 6.538263 AGAAGACAAGCCTTTTCTTATGAGT 58.462 36.000 5.86 0.00 29.54 3.41
504 548 7.001073 AGAAGACAAGCCTTTTCTTATGAGTT 58.999 34.615 5.86 0.00 29.54 3.01
505 549 6.809630 AGACAAGCCTTTTCTTATGAGTTC 57.190 37.500 0.00 0.00 0.00 3.01
506 550 6.538263 AGACAAGCCTTTTCTTATGAGTTCT 58.462 36.000 0.00 0.00 0.00 3.01
507 551 6.652900 AGACAAGCCTTTTCTTATGAGTTCTC 59.347 38.462 0.00 0.00 0.00 2.87
508 552 6.538263 ACAAGCCTTTTCTTATGAGTTCTCT 58.462 36.000 1.53 0.00 0.00 3.10
509 553 6.652900 ACAAGCCTTTTCTTATGAGTTCTCTC 59.347 38.462 1.53 0.00 40.79 3.20
510 554 6.619329 AGCCTTTTCTTATGAGTTCTCTCT 57.381 37.500 1.53 0.00 40.98 3.10
511 555 6.639563 AGCCTTTTCTTATGAGTTCTCTCTC 58.360 40.000 1.53 0.00 40.98 3.20
512 556 5.815222 GCCTTTTCTTATGAGTTCTCTCTCC 59.185 44.000 1.53 0.00 40.98 3.71
513 557 6.351796 GCCTTTTCTTATGAGTTCTCTCTCCT 60.352 42.308 1.53 0.00 40.98 3.69
514 558 7.264947 CCTTTTCTTATGAGTTCTCTCTCCTC 58.735 42.308 1.53 0.00 40.98 3.71
515 559 6.783708 TTTCTTATGAGTTCTCTCTCCTCC 57.216 41.667 1.53 0.00 40.98 4.30
516 560 5.458451 TCTTATGAGTTCTCTCTCCTCCA 57.542 43.478 1.53 0.00 40.98 3.86
517 561 5.197451 TCTTATGAGTTCTCTCTCCTCCAC 58.803 45.833 1.53 0.00 40.98 4.02
518 562 2.223803 TGAGTTCTCTCTCCTCCACC 57.776 55.000 1.53 0.00 40.98 4.61
519 563 1.713647 TGAGTTCTCTCTCCTCCACCT 59.286 52.381 1.53 0.00 40.98 4.00
520 564 2.291282 TGAGTTCTCTCTCCTCCACCTC 60.291 54.545 1.53 0.00 40.98 3.85
521 565 1.713647 AGTTCTCTCTCCTCCACCTCA 59.286 52.381 0.00 0.00 0.00 3.86
522 566 1.822371 GTTCTCTCTCCTCCACCTCAC 59.178 57.143 0.00 0.00 0.00 3.51
523 567 0.333312 TCTCTCTCCTCCACCTCACC 59.667 60.000 0.00 0.00 0.00 4.02
524 568 0.040351 CTCTCTCCTCCACCTCACCA 59.960 60.000 0.00 0.00 0.00 4.17
525 569 0.712979 TCTCTCCTCCACCTCACCAT 59.287 55.000 0.00 0.00 0.00 3.55
526 570 1.079490 TCTCTCCTCCACCTCACCATT 59.921 52.381 0.00 0.00 0.00 3.16
527 571 1.912043 CTCTCCTCCACCTCACCATTT 59.088 52.381 0.00 0.00 0.00 2.32
528 572 3.107601 CTCTCCTCCACCTCACCATTTA 58.892 50.000 0.00 0.00 0.00 1.40
529 573 3.713764 CTCTCCTCCACCTCACCATTTAT 59.286 47.826 0.00 0.00 0.00 1.40
530 574 3.711704 TCTCCTCCACCTCACCATTTATC 59.288 47.826 0.00 0.00 0.00 1.75
531 575 2.777692 TCCTCCACCTCACCATTTATCC 59.222 50.000 0.00 0.00 0.00 2.59
532 576 2.780010 CCTCCACCTCACCATTTATCCT 59.220 50.000 0.00 0.00 0.00 3.24
533 577 3.973973 CCTCCACCTCACCATTTATCCTA 59.026 47.826 0.00 0.00 0.00 2.94
534 578 4.202367 CCTCCACCTCACCATTTATCCTAC 60.202 50.000 0.00 0.00 0.00 3.18
535 579 3.386726 TCCACCTCACCATTTATCCTACG 59.613 47.826 0.00 0.00 0.00 3.51
536 580 3.134081 CCACCTCACCATTTATCCTACGT 59.866 47.826 0.00 0.00 0.00 3.57
537 581 4.119862 CACCTCACCATTTATCCTACGTG 58.880 47.826 0.00 0.00 0.00 4.49
538 582 3.134081 ACCTCACCATTTATCCTACGTGG 59.866 47.826 0.00 0.00 36.06 4.94
539 583 3.131396 CTCACCATTTATCCTACGTGGC 58.869 50.000 0.00 0.00 33.24 5.01
540 584 2.502130 TCACCATTTATCCTACGTGGCA 59.498 45.455 0.00 0.00 33.24 4.92
541 585 2.612212 CACCATTTATCCTACGTGGCAC 59.388 50.000 7.79 7.79 33.24 5.01
542 586 2.504175 ACCATTTATCCTACGTGGCACT 59.496 45.455 16.72 5.47 33.24 4.40
543 587 3.054655 ACCATTTATCCTACGTGGCACTT 60.055 43.478 16.72 9.21 33.24 3.16
544 588 3.560068 CCATTTATCCTACGTGGCACTTC 59.440 47.826 16.72 0.00 35.26 3.01
545 589 4.442706 CATTTATCCTACGTGGCACTTCT 58.557 43.478 16.72 0.21 35.26 2.85
546 590 5.452776 CCATTTATCCTACGTGGCACTTCTA 60.453 44.000 16.72 1.46 35.26 2.10
547 591 5.664294 TTTATCCTACGTGGCACTTCTAA 57.336 39.130 16.72 0.00 35.26 2.10
548 592 3.802948 ATCCTACGTGGCACTTCTAAG 57.197 47.619 16.72 0.62 35.26 2.18
549 593 2.799017 TCCTACGTGGCACTTCTAAGA 58.201 47.619 16.72 2.12 35.26 2.10
550 594 3.362706 TCCTACGTGGCACTTCTAAGAT 58.637 45.455 16.72 0.00 35.26 2.40
551 595 4.529897 TCCTACGTGGCACTTCTAAGATA 58.470 43.478 16.72 0.00 35.26 1.98
552 596 4.579340 TCCTACGTGGCACTTCTAAGATAG 59.421 45.833 16.72 0.00 35.26 2.08
553 597 3.166489 ACGTGGCACTTCTAAGATAGC 57.834 47.619 16.72 0.00 0.00 2.97
554 598 2.496070 ACGTGGCACTTCTAAGATAGCA 59.504 45.455 16.72 0.00 0.00 3.49
555 599 2.860735 CGTGGCACTTCTAAGATAGCAC 59.139 50.000 16.72 0.00 0.00 4.40
556 600 3.198872 GTGGCACTTCTAAGATAGCACC 58.801 50.000 11.13 0.00 0.00 5.01
557 601 2.837591 TGGCACTTCTAAGATAGCACCA 59.162 45.455 0.00 0.00 0.00 4.17
558 602 3.455910 TGGCACTTCTAAGATAGCACCAT 59.544 43.478 0.00 0.00 0.00 3.55
559 603 4.080356 TGGCACTTCTAAGATAGCACCATT 60.080 41.667 0.00 0.00 0.00 3.16
560 604 4.274459 GGCACTTCTAAGATAGCACCATTG 59.726 45.833 0.00 0.00 0.00 2.82
561 605 4.878397 GCACTTCTAAGATAGCACCATTGT 59.122 41.667 0.00 0.00 0.00 2.71
562 606 6.049149 GCACTTCTAAGATAGCACCATTGTA 58.951 40.000 0.00 0.00 0.00 2.41
563 607 6.018669 GCACTTCTAAGATAGCACCATTGTAC 60.019 42.308 0.00 0.00 0.00 2.90
564 608 7.041721 CACTTCTAAGATAGCACCATTGTACA 58.958 38.462 0.00 0.00 0.00 2.90
565 609 7.712639 CACTTCTAAGATAGCACCATTGTACAT 59.287 37.037 0.00 0.00 0.00 2.29
566 610 7.712639 ACTTCTAAGATAGCACCATTGTACATG 59.287 37.037 0.00 0.00 0.00 3.21
567 611 5.991606 TCTAAGATAGCACCATTGTACATGC 59.008 40.000 10.53 10.53 38.39 4.06
568 612 3.480470 AGATAGCACCATTGTACATGCC 58.520 45.455 14.08 1.71 38.92 4.40
569 613 2.051334 TAGCACCATTGTACATGCCC 57.949 50.000 14.08 0.00 38.92 5.36
570 614 0.332632 AGCACCATTGTACATGCCCT 59.667 50.000 14.08 0.00 38.92 5.19
571 615 1.563879 AGCACCATTGTACATGCCCTA 59.436 47.619 14.08 0.00 38.92 3.53
572 616 2.025416 AGCACCATTGTACATGCCCTAA 60.025 45.455 14.08 0.00 38.92 2.69
573 617 2.358898 GCACCATTGTACATGCCCTAAG 59.641 50.000 7.77 0.00 31.71 2.18
574 618 3.620488 CACCATTGTACATGCCCTAAGT 58.380 45.455 0.00 0.00 0.00 2.24
575 619 4.776349 CACCATTGTACATGCCCTAAGTA 58.224 43.478 0.00 0.00 0.00 2.24
576 620 5.189928 CACCATTGTACATGCCCTAAGTAA 58.810 41.667 0.00 0.00 0.00 2.24
577 621 5.827797 CACCATTGTACATGCCCTAAGTAAT 59.172 40.000 0.00 0.00 0.00 1.89
578 622 6.321181 CACCATTGTACATGCCCTAAGTAATT 59.679 38.462 0.00 0.00 0.00 1.40
579 623 6.546034 ACCATTGTACATGCCCTAAGTAATTC 59.454 38.462 0.00 0.00 0.00 2.17
580 624 6.772716 CCATTGTACATGCCCTAAGTAATTCT 59.227 38.462 0.00 0.00 0.00 2.40
581 625 7.285401 CCATTGTACATGCCCTAAGTAATTCTT 59.715 37.037 0.00 0.00 39.89 2.52
586 633 5.126061 ACATGCCCTAAGTAATTCTTTGCAG 59.874 40.000 0.00 0.00 37.37 4.41
678 732 9.811995 ACATTTCTTTCGTACTGCTAATATACA 57.188 29.630 0.00 0.00 0.00 2.29
749 804 5.752892 TTTCTACTACAGAGCAGATACCG 57.247 43.478 0.00 0.00 33.83 4.02
764 830 5.292101 GCAGATACCGATGGCATAATAAGTC 59.708 44.000 0.00 0.00 0.00 3.01
771 837 5.062683 CCGATGGCATAATAAGTCGAGAATG 59.937 44.000 0.00 0.00 0.00 2.67
861 939 1.133915 TCCGCCATATTCCAACTTCCC 60.134 52.381 0.00 0.00 0.00 3.97
931 1018 0.685097 CACTCCGTTTCCTTCCTCCA 59.315 55.000 0.00 0.00 0.00 3.86
938 1030 2.623416 CGTTTCCTTCCTCCAAAAGCTT 59.377 45.455 0.00 0.00 0.00 3.74
950 1042 6.493458 TCCTCCAAAAGCTTGTATTTTTAGCT 59.507 34.615 0.00 0.00 46.63 3.32
958 1050 8.669946 AAGCTTGTATTTTTAGCTATCTCTCC 57.330 34.615 0.00 0.00 44.05 3.71
1093 1187 1.296392 CACTCCATCAAGGTCGCCA 59.704 57.895 0.00 0.00 39.02 5.69
1177 1280 2.969238 CCGACGCCAGGATGATGC 60.969 66.667 0.00 0.00 39.69 3.91
1245 1348 2.687805 CGCCGAGTCCGACTTCTCA 61.688 63.158 1.71 0.00 38.22 3.27
1718 1867 2.281761 CGAGTGCCCCTGTTGCTT 60.282 61.111 0.00 0.00 0.00 3.91
1851 2003 0.536915 GCCTGGGCCTCATTGATCTC 60.537 60.000 4.53 0.00 34.56 2.75
1909 2061 1.479709 CGTGTCAGATCCCTTCCTCT 58.520 55.000 0.00 0.00 0.00 3.69
1911 2063 1.760029 GTGTCAGATCCCTTCCTCTCC 59.240 57.143 0.00 0.00 0.00 3.71
1941 2093 0.240411 GCCACTGAAAGCAAGCAGAG 59.760 55.000 6.71 0.00 37.60 3.35
1942 2094 0.240411 CCACTGAAAGCAAGCAGAGC 59.760 55.000 6.71 0.00 37.60 4.09
1943 2095 0.949397 CACTGAAAGCAAGCAGAGCA 59.051 50.000 6.71 0.00 37.60 4.26
1944 2096 1.069159 CACTGAAAGCAAGCAGAGCAG 60.069 52.381 6.71 0.00 37.60 4.24
1945 2097 1.202734 ACTGAAAGCAAGCAGAGCAGA 60.203 47.619 6.71 0.00 37.60 4.26
1946 2098 1.465387 CTGAAAGCAAGCAGAGCAGAG 59.535 52.381 0.00 0.00 34.06 3.35
1947 2099 0.168568 GAAAGCAAGCAGAGCAGAGC 59.831 55.000 0.00 0.00 0.00 4.09
1948 2100 1.575576 AAAGCAAGCAGAGCAGAGCG 61.576 55.000 0.00 0.00 35.48 5.03
1949 2101 2.433838 GCAAGCAGAGCAGAGCGA 60.434 61.111 0.00 0.00 35.48 4.93
1950 2102 2.738695 GCAAGCAGAGCAGAGCGAC 61.739 63.158 0.00 0.00 35.48 5.19
1951 2103 2.126149 AAGCAGAGCAGAGCGACG 60.126 61.111 0.00 0.00 35.48 5.12
1952 2104 2.630617 AAGCAGAGCAGAGCGACGA 61.631 57.895 0.00 0.00 35.48 4.20
1953 2105 2.126307 GCAGAGCAGAGCGACGAA 60.126 61.111 0.00 0.00 0.00 3.85
1993 2145 0.949397 GCTTTTCCTTTCGGTCGGTT 59.051 50.000 0.00 0.00 0.00 4.44
2024 2176 4.971282 TGGTTCCAGTGGAGATAGATGATT 59.029 41.667 12.67 0.00 31.21 2.57
2059 2211 1.891150 CTGGCAAGAAAGATGGTGCTT 59.109 47.619 0.00 0.00 37.17 3.91
2111 2266 7.323052 AGGGTTAAGAAAAAGAGAGACATCT 57.677 36.000 0.00 0.00 38.98 2.90
2126 2281 4.916983 GACATCTGTCTGTCTATGCTCT 57.083 45.455 3.07 0.00 41.87 4.09
2127 2282 5.261209 GACATCTGTCTGTCTATGCTCTT 57.739 43.478 3.07 0.00 41.87 2.85
2128 2283 5.008619 ACATCTGTCTGTCTATGCTCTTG 57.991 43.478 0.00 0.00 0.00 3.02
2129 2284 3.516981 TCTGTCTGTCTATGCTCTTGC 57.483 47.619 0.00 0.00 40.20 4.01
2130 2285 3.095332 TCTGTCTGTCTATGCTCTTGCT 58.905 45.455 0.00 0.00 40.48 3.91
2131 2286 3.130164 TCTGTCTGTCTATGCTCTTGCTC 59.870 47.826 0.00 0.00 40.48 4.26
2132 2287 2.159324 TGTCTGTCTATGCTCTTGCTCG 60.159 50.000 0.00 0.00 40.48 5.03
2133 2288 1.406898 TCTGTCTATGCTCTTGCTCGG 59.593 52.381 0.00 0.00 40.48 4.63
2134 2289 0.461548 TGTCTATGCTCTTGCTCGGG 59.538 55.000 0.00 0.00 40.48 5.14
2179 2375 1.480545 GTTCTCTTCTCCCTCAGCTCC 59.519 57.143 0.00 0.00 0.00 4.70
2230 2430 1.480954 GAACAGAGTAGATCGGGCCAA 59.519 52.381 4.39 0.00 0.00 4.52
2236 2436 1.628846 AGTAGATCGGGCCAACAAACT 59.371 47.619 4.39 0.00 0.00 2.66
2252 2452 4.087182 ACAAACTGAGCCAGCTACTACTA 58.913 43.478 0.00 0.00 34.37 1.82
2262 2462 7.093465 TGAGCCAGCTACTACTAGTTATTGTTT 60.093 37.037 0.00 0.00 0.00 2.83
2264 2464 7.764901 AGCCAGCTACTACTAGTTATTGTTTTC 59.235 37.037 0.00 0.00 0.00 2.29
2265 2465 7.764901 GCCAGCTACTACTAGTTATTGTTTTCT 59.235 37.037 0.00 0.00 0.00 2.52
2292 2496 3.827008 TGCTTGATCTTGGTAGCCTAG 57.173 47.619 0.00 0.00 32.73 3.02
2367 2592 2.033424 GCTGTTCTTGTTCCAACTGTCC 59.967 50.000 0.00 0.00 0.00 4.02
2387 2620 0.963856 ATCGCATAGCATGGCATGGG 60.964 55.000 27.48 12.25 34.33 4.00
2389 2622 1.859427 CGCATAGCATGGCATGGGAC 61.859 60.000 27.48 12.09 34.65 4.46
2390 2623 0.538977 GCATAGCATGGCATGGGACT 60.539 55.000 27.48 18.28 0.00 3.85
2391 2624 1.991121 CATAGCATGGCATGGGACTT 58.009 50.000 27.48 6.15 0.00 3.01
2392 2625 1.611977 CATAGCATGGCATGGGACTTG 59.388 52.381 27.48 13.03 0.00 3.16
2393 2626 0.106569 TAGCATGGCATGGGACTTGG 60.107 55.000 27.48 1.12 0.00 3.61
2398 2631 2.409870 GGCATGGGACTTGGCTTCG 61.410 63.158 0.00 0.00 36.76 3.79
2411 2644 3.578456 CTTCGCCAAGCAACCGAT 58.422 55.556 0.00 0.00 0.00 4.18
2412 2645 1.135315 CTTCGCCAAGCAACCGATG 59.865 57.895 0.00 0.00 0.00 3.84
2413 2646 1.298157 CTTCGCCAAGCAACCGATGA 61.298 55.000 0.00 0.00 0.00 2.92
2414 2647 0.676466 TTCGCCAAGCAACCGATGAT 60.676 50.000 0.00 0.00 0.00 2.45
2452 2685 4.463879 CGCTAGCAGGCAGGCAGT 62.464 66.667 16.45 0.00 35.83 4.40
2453 2686 2.903357 GCTAGCAGGCAGGCAGTA 59.097 61.111 10.63 0.00 35.83 2.74
2454 2687 1.227497 GCTAGCAGGCAGGCAGTAG 60.227 63.158 10.63 0.00 35.83 2.57
2455 2688 1.965754 GCTAGCAGGCAGGCAGTAGT 61.966 60.000 10.63 0.00 35.83 2.73
2456 2689 1.403814 CTAGCAGGCAGGCAGTAGTA 58.596 55.000 0.00 0.00 35.83 1.82
2502 2751 1.033746 AACAATGCAGGATCGGCCAG 61.034 55.000 2.24 0.00 40.02 4.85
2504 2753 1.147824 AATGCAGGATCGGCCAGAG 59.852 57.895 2.24 0.00 40.02 3.35
2505 2754 2.955022 AATGCAGGATCGGCCAGAGC 62.955 60.000 2.24 3.66 40.02 4.09
2507 2756 3.842923 CAGGATCGGCCAGAGCGT 61.843 66.667 2.24 2.67 41.24 5.07
2509 2758 2.892425 GGATCGGCCAGAGCGTTG 60.892 66.667 2.24 0.00 41.24 4.10
2510 2759 2.125512 GATCGGCCAGAGCGTTGT 60.126 61.111 2.24 0.00 41.24 3.32
2511 2760 1.741770 GATCGGCCAGAGCGTTGTT 60.742 57.895 2.24 0.00 41.24 2.83
2512 2761 1.970917 GATCGGCCAGAGCGTTGTTG 61.971 60.000 2.24 0.00 41.24 3.33
2513 2762 3.726517 CGGCCAGAGCGTTGTTGG 61.727 66.667 2.24 0.00 41.24 3.77
2515 2764 2.594592 GCCAGAGCGTTGTTGGGT 60.595 61.111 2.31 0.00 32.53 4.51
2516 2765 2.617274 GCCAGAGCGTTGTTGGGTC 61.617 63.158 2.31 0.00 32.53 4.46
2518 2767 1.300620 CAGAGCGTTGTTGGGTCGA 60.301 57.895 0.00 0.00 37.02 4.20
2520 2769 0.389948 AGAGCGTTGTTGGGTCGATC 60.390 55.000 0.00 0.00 39.69 3.69
2521 2770 1.683790 GAGCGTTGTTGGGTCGATCG 61.684 60.000 9.36 9.36 31.06 3.69
2522 2771 2.736682 GCGTTGTTGGGTCGATCGG 61.737 63.158 16.41 0.00 0.00 4.18
2523 2772 1.373748 CGTTGTTGGGTCGATCGGT 60.374 57.895 16.41 0.00 0.00 4.69
2540 2832 0.827368 GGTGATCGCCTCCTTTCTCT 59.173 55.000 18.40 0.00 0.00 3.10
2541 2833 1.472376 GGTGATCGCCTCCTTTCTCTG 60.472 57.143 18.40 0.00 0.00 3.35
2548 2840 0.903942 CCTCCTTTCTCTGCTCTGCT 59.096 55.000 0.00 0.00 0.00 4.24
2549 2841 1.134729 CCTCCTTTCTCTGCTCTGCTC 60.135 57.143 0.00 0.00 0.00 4.26
2566 2858 2.674380 CTTGTGCTCCTGCCCACC 60.674 66.667 0.00 0.00 38.71 4.61
2567 2859 3.496309 CTTGTGCTCCTGCCCACCA 62.496 63.158 0.00 0.00 38.71 4.17
2568 2860 3.790416 TTGTGCTCCTGCCCACCAC 62.790 63.158 0.00 0.00 38.71 4.16
2571 2863 4.284550 GCTCCTGCCCACCACCAA 62.285 66.667 0.00 0.00 0.00 3.67
2579 2871 2.277072 CCACCACCAACACCACCA 59.723 61.111 0.00 0.00 0.00 4.17
2597 2889 0.323178 CACCTGCCTGCATTTCTCCT 60.323 55.000 0.00 0.00 0.00 3.69
2683 2982 1.076549 GCTTCCCACCACATTCCCA 59.923 57.895 0.00 0.00 0.00 4.37
2689 2990 1.076044 CACCACATTCCCATCCCCC 60.076 63.158 0.00 0.00 0.00 5.40
2703 3004 4.778143 CCCCCTACTGTGCCGTGC 62.778 72.222 0.00 0.00 0.00 5.34
2706 3007 4.373116 CCTACTGTGCCGTGCGGT 62.373 66.667 12.46 0.00 37.65 5.68
2707 3008 2.809601 CTACTGTGCCGTGCGGTC 60.810 66.667 12.46 5.43 37.65 4.79
2708 3009 4.710695 TACTGTGCCGTGCGGTCG 62.711 66.667 12.46 1.52 37.65 4.79
2737 3038 3.111939 CCGTCCGGCACAAAACAA 58.888 55.556 0.00 0.00 0.00 2.83
2738 3039 1.433879 CCGTCCGGCACAAAACAAA 59.566 52.632 0.00 0.00 0.00 2.83
2739 3040 0.031449 CCGTCCGGCACAAAACAAAT 59.969 50.000 0.00 0.00 0.00 2.32
2740 3041 1.537135 CCGTCCGGCACAAAACAAATT 60.537 47.619 0.00 0.00 0.00 1.82
2760 3061 1.828595 TGCATTGCATTGAATCCTGCT 59.171 42.857 7.38 0.00 39.16 4.24
2761 3062 2.159156 TGCATTGCATTGAATCCTGCTC 60.159 45.455 7.38 0.00 39.16 4.26
2762 3063 2.159156 GCATTGCATTGAATCCTGCTCA 60.159 45.455 12.66 0.00 39.16 4.26
2764 3065 1.466856 TGCATTGAATCCTGCTCACC 58.533 50.000 6.49 0.00 39.16 4.02
2770 3071 3.438216 TGAATCCTGCTCACCAAATGA 57.562 42.857 0.00 0.00 35.45 2.57
2775 3076 0.798776 CTGCTCACCAAATGACCGTC 59.201 55.000 0.00 0.00 32.37 4.79
2777 3078 1.079503 GCTCACCAAATGACCGTCTC 58.920 55.000 0.00 0.00 32.37 3.36
2778 3079 1.350193 CTCACCAAATGACCGTCTCG 58.650 55.000 0.00 0.00 32.37 4.04
2792 3093 2.482721 CCGTCTCGGCAACAAATAAAGT 59.517 45.455 0.00 0.00 41.17 2.66
2794 3095 3.059188 CGTCTCGGCAACAAATAAAGTGT 60.059 43.478 0.00 0.00 0.00 3.55
2798 3099 3.500680 TCGGCAACAAATAAAGTGTCTCC 59.499 43.478 0.00 0.00 0.00 3.71
2805 3106 6.877611 ACAAATAAAGTGTCTCCGAATGTT 57.122 33.333 0.00 0.00 0.00 2.71
2806 3107 7.272037 ACAAATAAAGTGTCTCCGAATGTTT 57.728 32.000 0.00 0.00 0.00 2.83
2807 3108 7.138736 ACAAATAAAGTGTCTCCGAATGTTTG 58.861 34.615 0.00 0.00 0.00 2.93
2808 3109 3.626028 AAAGTGTCTCCGAATGTTTGC 57.374 42.857 0.00 0.00 0.00 3.68
2820 3121 2.987413 ATGTTTGCTTTCAATCGCGA 57.013 40.000 13.09 13.09 31.33 5.87
2826 3127 2.887337 TGCTTTCAATCGCGATACAGA 58.113 42.857 24.00 17.41 0.00 3.41
2827 3128 2.860136 TGCTTTCAATCGCGATACAGAG 59.140 45.455 24.00 18.04 0.00 3.35
2828 3129 2.348032 GCTTTCAATCGCGATACAGAGC 60.348 50.000 24.00 23.16 0.00 4.09
2829 3130 2.871182 TTCAATCGCGATACAGAGCT 57.129 45.000 24.00 0.87 0.00 4.09
2830 3131 3.982576 TTCAATCGCGATACAGAGCTA 57.017 42.857 24.00 3.68 0.00 3.32
2831 3132 3.544356 TCAATCGCGATACAGAGCTAG 57.456 47.619 24.00 4.31 0.00 3.42
2832 3133 1.982223 CAATCGCGATACAGAGCTAGC 59.018 52.381 24.00 6.62 0.00 3.42
2833 3134 0.523966 ATCGCGATACAGAGCTAGCC 59.476 55.000 22.33 2.81 0.00 3.93
2834 3135 0.818040 TCGCGATACAGAGCTAGCCA 60.818 55.000 12.13 0.00 0.00 4.75
2847 3148 5.244851 CAGAGCTAGCCATGAAGATTACCTA 59.755 44.000 12.13 0.00 0.00 3.08
2850 3151 5.011533 AGCTAGCCATGAAGATTACCTACTG 59.988 44.000 12.13 0.00 0.00 2.74
2852 3153 2.802816 GCCATGAAGATTACCTACTGCG 59.197 50.000 0.00 0.00 0.00 5.18
2856 3157 4.530710 TGAAGATTACCTACTGCGTTGT 57.469 40.909 0.00 0.00 0.00 3.32
2859 3160 4.267349 AGATTACCTACTGCGTTGTTGT 57.733 40.909 0.00 0.00 0.00 3.32
2863 3164 3.182341 ACCTACTGCGTTGTTGTTGTA 57.818 42.857 0.00 0.00 0.00 2.41
2870 3171 3.259902 TGCGTTGTTGTTGTACACTGTA 58.740 40.909 0.00 0.00 0.00 2.74
2875 3176 4.739587 TGTTGTTGTACACTGTACAGGA 57.260 40.909 26.12 8.91 0.00 3.86
2929 3230 2.818130 TTGGGAGCTGAATTTGTTGC 57.182 45.000 0.00 0.00 0.00 4.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
45 46 3.365265 CCTTGTGAGGCCGCAACC 61.365 66.667 12.05 0.00 37.82 3.77
46 47 1.452145 TTTCCTTGTGAGGCCGCAAC 61.452 55.000 12.05 6.43 43.21 4.17
47 48 1.152860 TTTCCTTGTGAGGCCGCAA 60.153 52.632 12.05 10.41 43.21 4.85
48 49 1.600636 CTTTCCTTGTGAGGCCGCA 60.601 57.895 4.49 4.49 43.21 5.69
93 94 5.070847 ACATGGCTGTCAATTCTTCCTTTTT 59.929 36.000 0.00 0.00 0.00 1.94
157 158 6.127814 CGAGAATACCGGGCATTATTACTCTA 60.128 42.308 6.32 0.00 0.00 2.43
162 163 3.592059 GCGAGAATACCGGGCATTATTA 58.408 45.455 6.32 0.00 0.00 0.98
163 164 2.423577 GCGAGAATACCGGGCATTATT 58.576 47.619 6.32 0.00 0.00 1.40
164 165 1.671850 CGCGAGAATACCGGGCATTAT 60.672 52.381 6.32 1.58 33.50 1.28
165 166 0.319211 CGCGAGAATACCGGGCATTA 60.319 55.000 6.32 0.00 33.50 1.90
167 168 2.029073 CGCGAGAATACCGGGCAT 59.971 61.111 6.32 0.00 33.50 4.40
170 171 2.658593 CAGCGCGAGAATACCGGG 60.659 66.667 12.10 0.00 41.89 5.73
181 188 3.181967 GTGCCTACTGTCAGCGCG 61.182 66.667 0.00 0.00 0.00 6.86
203 217 5.412594 GCTTGATAACTTTCCATGTGAGACA 59.587 40.000 0.00 0.00 0.00 3.41
204 218 5.412594 TGCTTGATAACTTTCCATGTGAGAC 59.587 40.000 0.00 0.00 0.00 3.36
280 324 4.072131 TGCCCTTACTCTTTTGTAGCAAG 58.928 43.478 0.00 0.00 0.00 4.01
281 325 4.093472 TGCCCTTACTCTTTTGTAGCAA 57.907 40.909 0.00 0.00 0.00 3.91
283 327 4.010349 ACATGCCCTTACTCTTTTGTAGC 58.990 43.478 0.00 0.00 0.00 3.58
288 332 5.418840 CCATTGTACATGCCCTTACTCTTTT 59.581 40.000 0.00 0.00 0.00 2.27
292 336 3.886123 ACCATTGTACATGCCCTTACTC 58.114 45.455 0.00 0.00 0.00 2.59
293 337 4.016444 CAACCATTGTACATGCCCTTACT 58.984 43.478 0.00 0.00 0.00 2.24
294 338 4.013728 TCAACCATTGTACATGCCCTTAC 58.986 43.478 0.00 0.00 0.00 2.34
295 339 4.308526 TCAACCATTGTACATGCCCTTA 57.691 40.909 0.00 0.00 0.00 2.69
296 340 3.168035 TCAACCATTGTACATGCCCTT 57.832 42.857 0.00 0.00 0.00 3.95
298 342 3.569701 CCTATCAACCATTGTACATGCCC 59.430 47.826 0.00 0.00 0.00 5.36
299 343 4.275936 GTCCTATCAACCATTGTACATGCC 59.724 45.833 0.00 0.00 0.00 4.40
300 344 4.881273 TGTCCTATCAACCATTGTACATGC 59.119 41.667 0.00 0.00 0.00 4.06
302 346 6.156949 AGACTGTCCTATCAACCATTGTACAT 59.843 38.462 3.76 0.00 0.00 2.29
303 347 5.483937 AGACTGTCCTATCAACCATTGTACA 59.516 40.000 3.76 0.00 0.00 2.90
304 348 5.978814 AGACTGTCCTATCAACCATTGTAC 58.021 41.667 3.76 0.00 0.00 2.90
305 349 6.620877 AAGACTGTCCTATCAACCATTGTA 57.379 37.500 3.76 0.00 0.00 2.41
306 350 5.505181 AAGACTGTCCTATCAACCATTGT 57.495 39.130 3.76 0.00 0.00 2.71
307 351 7.504403 AGATAAGACTGTCCTATCAACCATTG 58.496 38.462 22.10 0.00 0.00 2.82
308 352 7.682787 AGATAAGACTGTCCTATCAACCATT 57.317 36.000 22.10 4.27 0.00 3.16
309 353 7.682787 AAGATAAGACTGTCCTATCAACCAT 57.317 36.000 22.10 4.84 0.00 3.55
310 354 8.603898 TTAAGATAAGACTGTCCTATCAACCA 57.396 34.615 22.10 7.00 0.00 3.67
311 355 8.697292 ACTTAAGATAAGACTGTCCTATCAACC 58.303 37.037 22.10 3.06 0.00 3.77
312 356 9.738832 GACTTAAGATAAGACTGTCCTATCAAC 57.261 37.037 22.10 3.34 0.00 3.18
313 357 9.702253 AGACTTAAGATAAGACTGTCCTATCAA 57.298 33.333 22.10 11.67 0.00 2.57
314 358 9.702253 AAGACTTAAGATAAGACTGTCCTATCA 57.298 33.333 22.10 5.98 0.00 2.15
315 359 9.959749 CAAGACTTAAGATAAGACTGTCCTATC 57.040 37.037 15.49 15.49 0.00 2.08
316 360 8.417884 GCAAGACTTAAGATAAGACTGTCCTAT 58.582 37.037 10.09 0.97 0.00 2.57
317 361 7.396339 TGCAAGACTTAAGATAAGACTGTCCTA 59.604 37.037 10.09 0.00 0.00 2.94
318 362 6.211584 TGCAAGACTTAAGATAAGACTGTCCT 59.788 38.462 10.09 0.00 0.00 3.85
319 363 6.398918 TGCAAGACTTAAGATAAGACTGTCC 58.601 40.000 10.09 0.00 0.00 4.02
320 364 7.547370 ACATGCAAGACTTAAGATAAGACTGTC 59.453 37.037 10.09 0.00 0.00 3.51
321 365 7.390027 ACATGCAAGACTTAAGATAAGACTGT 58.610 34.615 10.09 2.69 0.00 3.55
322 366 7.840342 ACATGCAAGACTTAAGATAAGACTG 57.160 36.000 10.09 2.08 0.00 3.51
334 378 8.887717 GTCATCTCTAAATTACATGCAAGACTT 58.112 33.333 0.00 0.00 0.00 3.01
335 379 8.043113 TGTCATCTCTAAATTACATGCAAGACT 58.957 33.333 0.00 0.00 0.00 3.24
336 380 8.201554 TGTCATCTCTAAATTACATGCAAGAC 57.798 34.615 0.00 0.00 0.00 3.01
337 381 8.791327 TTGTCATCTCTAAATTACATGCAAGA 57.209 30.769 0.00 0.00 0.00 3.02
338 382 9.844790 TTTTGTCATCTCTAAATTACATGCAAG 57.155 29.630 0.00 0.00 0.00 4.01
369 413 8.322091 GGCTAAGATATAACCCATTGTAGACAT 58.678 37.037 0.00 0.00 0.00 3.06
370 414 7.512746 AGGCTAAGATATAACCCATTGTAGACA 59.487 37.037 0.00 0.00 0.00 3.41
371 415 7.908453 AGGCTAAGATATAACCCATTGTAGAC 58.092 38.462 0.00 0.00 0.00 2.59
372 416 8.506196 AAGGCTAAGATATAACCCATTGTAGA 57.494 34.615 0.00 0.00 0.00 2.59
375 419 9.117223 AGATAAGGCTAAGATATAACCCATTGT 57.883 33.333 0.00 0.00 0.00 2.71
376 420 9.965902 AAGATAAGGCTAAGATATAACCCATTG 57.034 33.333 0.00 0.00 0.00 2.82
378 422 9.338968 TGAAGATAAGGCTAAGATATAACCCAT 57.661 33.333 0.00 0.00 0.00 4.00
379 423 8.736097 TGAAGATAAGGCTAAGATATAACCCA 57.264 34.615 0.00 0.00 0.00 4.51
417 461 9.308000 ACAATTTGTCTCACCATATTTTAAGGA 57.692 29.630 0.00 0.00 0.00 3.36
418 462 9.357652 CACAATTTGTCTCACCATATTTTAAGG 57.642 33.333 0.00 0.00 0.00 2.69
419 463 8.863049 GCACAATTTGTCTCACCATATTTTAAG 58.137 33.333 0.00 0.00 0.00 1.85
420 464 8.584157 AGCACAATTTGTCTCACCATATTTTAA 58.416 29.630 0.00 0.00 0.00 1.52
421 465 8.121305 AGCACAATTTGTCTCACCATATTTTA 57.879 30.769 0.00 0.00 0.00 1.52
422 466 6.996509 AGCACAATTTGTCTCACCATATTTT 58.003 32.000 0.00 0.00 0.00 1.82
423 467 6.594788 AGCACAATTTGTCTCACCATATTT 57.405 33.333 0.00 0.00 0.00 1.40
424 468 7.611467 TCTTAGCACAATTTGTCTCACCATATT 59.389 33.333 0.00 0.00 0.00 1.28
425 469 7.112122 TCTTAGCACAATTTGTCTCACCATAT 58.888 34.615 0.00 0.00 0.00 1.78
426 470 6.472016 TCTTAGCACAATTTGTCTCACCATA 58.528 36.000 0.00 0.00 0.00 2.74
427 471 5.316167 TCTTAGCACAATTTGTCTCACCAT 58.684 37.500 0.00 0.00 0.00 3.55
428 472 4.713553 TCTTAGCACAATTTGTCTCACCA 58.286 39.130 0.00 0.00 0.00 4.17
429 473 4.997395 TCTCTTAGCACAATTTGTCTCACC 59.003 41.667 0.00 0.00 0.00 4.02
430 474 6.369890 TGATCTCTTAGCACAATTTGTCTCAC 59.630 38.462 0.00 0.00 0.00 3.51
431 475 6.466812 TGATCTCTTAGCACAATTTGTCTCA 58.533 36.000 0.00 0.00 0.00 3.27
432 476 6.974932 TGATCTCTTAGCACAATTTGTCTC 57.025 37.500 0.00 0.00 0.00 3.36
433 477 7.337167 AGATGATCTCTTAGCACAATTTGTCT 58.663 34.615 0.00 3.34 0.00 3.41
434 478 7.551035 AGATGATCTCTTAGCACAATTTGTC 57.449 36.000 0.00 0.00 0.00 3.18
435 479 7.551035 GAGATGATCTCTTAGCACAATTTGT 57.449 36.000 14.98 0.00 40.30 2.83
467 511 9.746457 AAAGGCTTGTCTTCTCTTATTTAAGAT 57.254 29.630 0.00 0.00 41.12 2.40
468 512 9.574516 AAAAGGCTTGTCTTCTCTTATTTAAGA 57.425 29.630 0.00 0.44 39.82 2.10
469 513 9.833182 GAAAAGGCTTGTCTTCTCTTATTTAAG 57.167 33.333 10.26 0.00 34.65 1.85
470 514 9.574516 AGAAAAGGCTTGTCTTCTCTTATTTAA 57.425 29.630 14.33 0.00 0.00 1.52
471 515 9.574516 AAGAAAAGGCTTGTCTTCTCTTATTTA 57.425 29.630 23.96 0.00 33.68 1.40
472 516 8.470657 AAGAAAAGGCTTGTCTTCTCTTATTT 57.529 30.769 23.96 2.07 33.68 1.40
473 517 9.746457 ATAAGAAAAGGCTTGTCTTCTCTTATT 57.254 29.630 30.86 11.70 40.94 1.40
474 518 9.171877 CATAAGAAAAGGCTTGTCTTCTCTTAT 57.828 33.333 30.86 18.17 42.82 1.73
475 519 8.375506 TCATAAGAAAAGGCTTGTCTTCTCTTA 58.624 33.333 30.86 16.85 39.30 2.10
476 520 7.227156 TCATAAGAAAAGGCTTGTCTTCTCTT 58.773 34.615 30.86 18.21 37.66 2.85
477 521 6.773638 TCATAAGAAAAGGCTTGTCTTCTCT 58.226 36.000 30.86 16.87 33.70 3.10
478 522 6.652900 ACTCATAAGAAAAGGCTTGTCTTCTC 59.347 38.462 30.86 8.39 33.70 2.87
479 523 6.538263 ACTCATAAGAAAAGGCTTGTCTTCT 58.462 36.000 30.86 21.01 33.70 2.85
480 524 6.809630 ACTCATAAGAAAAGGCTTGTCTTC 57.190 37.500 30.86 17.17 33.70 2.87
481 525 7.001073 AGAACTCATAAGAAAAGGCTTGTCTT 58.999 34.615 30.04 30.04 35.77 3.01
482 526 6.538263 AGAACTCATAAGAAAAGGCTTGTCT 58.462 36.000 14.33 14.33 0.00 3.41
483 527 6.652900 AGAGAACTCATAAGAAAAGGCTTGTC 59.347 38.462 9.51 9.51 0.00 3.18
484 528 6.538263 AGAGAACTCATAAGAAAAGGCTTGT 58.462 36.000 0.00 0.00 0.00 3.16
485 529 6.878389 AGAGAGAACTCATAAGAAAAGGCTTG 59.122 38.462 0.00 0.00 44.79 4.01
486 530 7.014988 AGAGAGAACTCATAAGAAAAGGCTT 57.985 36.000 0.00 0.00 44.79 4.35
487 531 6.351796 GGAGAGAGAACTCATAAGAAAAGGCT 60.352 42.308 4.64 0.00 44.79 4.58
488 532 5.815222 GGAGAGAGAACTCATAAGAAAAGGC 59.185 44.000 4.64 0.00 44.79 4.35
489 533 7.181569 AGGAGAGAGAACTCATAAGAAAAGG 57.818 40.000 4.64 0.00 44.79 3.11
490 534 7.093552 TGGAGGAGAGAGAACTCATAAGAAAAG 60.094 40.741 4.64 0.00 44.79 2.27
491 535 6.726299 TGGAGGAGAGAGAACTCATAAGAAAA 59.274 38.462 4.64 0.00 44.79 2.29
492 536 6.153680 GTGGAGGAGAGAGAACTCATAAGAAA 59.846 42.308 4.64 0.00 44.79 2.52
493 537 5.654650 GTGGAGGAGAGAGAACTCATAAGAA 59.345 44.000 4.64 0.00 44.79 2.52
494 538 5.197451 GTGGAGGAGAGAGAACTCATAAGA 58.803 45.833 4.64 0.00 44.79 2.10
495 539 4.340950 GGTGGAGGAGAGAGAACTCATAAG 59.659 50.000 4.64 0.00 44.79 1.73
496 540 4.017037 AGGTGGAGGAGAGAGAACTCATAA 60.017 45.833 4.64 0.00 44.79 1.90
497 541 3.529734 AGGTGGAGGAGAGAGAACTCATA 59.470 47.826 4.64 0.00 44.79 2.15
498 542 2.314549 AGGTGGAGGAGAGAGAACTCAT 59.685 50.000 4.64 0.00 44.79 2.90
499 543 1.713647 AGGTGGAGGAGAGAGAACTCA 59.286 52.381 4.64 0.00 44.79 3.41
500 544 2.291282 TGAGGTGGAGGAGAGAGAACTC 60.291 54.545 0.00 0.00 42.90 3.01
501 545 1.713647 TGAGGTGGAGGAGAGAGAACT 59.286 52.381 0.00 0.00 0.00 3.01
502 546 1.822371 GTGAGGTGGAGGAGAGAGAAC 59.178 57.143 0.00 0.00 0.00 3.01
503 547 1.272760 GGTGAGGTGGAGGAGAGAGAA 60.273 57.143 0.00 0.00 0.00 2.87
504 548 0.333312 GGTGAGGTGGAGGAGAGAGA 59.667 60.000 0.00 0.00 0.00 3.10
505 549 0.040351 TGGTGAGGTGGAGGAGAGAG 59.960 60.000 0.00 0.00 0.00 3.20
506 550 0.712979 ATGGTGAGGTGGAGGAGAGA 59.287 55.000 0.00 0.00 0.00 3.10
507 551 1.577736 AATGGTGAGGTGGAGGAGAG 58.422 55.000 0.00 0.00 0.00 3.20
508 552 2.044793 AAATGGTGAGGTGGAGGAGA 57.955 50.000 0.00 0.00 0.00 3.71
509 553 3.181450 GGATAAATGGTGAGGTGGAGGAG 60.181 52.174 0.00 0.00 0.00 3.69
510 554 2.777692 GGATAAATGGTGAGGTGGAGGA 59.222 50.000 0.00 0.00 0.00 3.71
511 555 2.780010 AGGATAAATGGTGAGGTGGAGG 59.220 50.000 0.00 0.00 0.00 4.30
512 556 4.501571 CGTAGGATAAATGGTGAGGTGGAG 60.502 50.000 0.00 0.00 0.00 3.86
513 557 3.386726 CGTAGGATAAATGGTGAGGTGGA 59.613 47.826 0.00 0.00 0.00 4.02
514 558 3.134081 ACGTAGGATAAATGGTGAGGTGG 59.866 47.826 0.00 0.00 0.00 4.61
515 559 4.119862 CACGTAGGATAAATGGTGAGGTG 58.880 47.826 0.00 0.00 0.00 4.00
516 560 3.134081 CCACGTAGGATAAATGGTGAGGT 59.866 47.826 0.00 0.00 41.22 3.85
517 561 3.728845 CCACGTAGGATAAATGGTGAGG 58.271 50.000 0.00 0.00 41.22 3.86
518 562 3.131396 GCCACGTAGGATAAATGGTGAG 58.869 50.000 8.04 0.00 41.22 3.51
519 563 2.502130 TGCCACGTAGGATAAATGGTGA 59.498 45.455 8.04 0.00 41.22 4.02
520 564 2.612212 GTGCCACGTAGGATAAATGGTG 59.388 50.000 8.04 0.00 41.22 4.17
521 565 2.504175 AGTGCCACGTAGGATAAATGGT 59.496 45.455 8.04 0.00 41.22 3.55
522 566 3.194005 AGTGCCACGTAGGATAAATGG 57.806 47.619 8.04 0.00 41.22 3.16
523 567 4.442706 AGAAGTGCCACGTAGGATAAATG 58.557 43.478 8.04 0.00 41.22 2.32
524 568 4.755266 AGAAGTGCCACGTAGGATAAAT 57.245 40.909 8.04 0.00 41.22 1.40
525 569 5.419788 TCTTAGAAGTGCCACGTAGGATAAA 59.580 40.000 8.04 0.00 41.22 1.40
526 570 4.951715 TCTTAGAAGTGCCACGTAGGATAA 59.048 41.667 8.04 0.00 41.22 1.75
527 571 4.529897 TCTTAGAAGTGCCACGTAGGATA 58.470 43.478 8.04 0.00 41.22 2.59
528 572 3.362706 TCTTAGAAGTGCCACGTAGGAT 58.637 45.455 8.04 0.00 41.22 3.24
529 573 2.799017 TCTTAGAAGTGCCACGTAGGA 58.201 47.619 8.04 0.00 41.22 2.94
530 574 3.802948 ATCTTAGAAGTGCCACGTAGG 57.197 47.619 0.00 0.00 41.84 3.18
531 575 4.202020 TGCTATCTTAGAAGTGCCACGTAG 60.202 45.833 0.00 0.00 0.00 3.51
532 576 3.697542 TGCTATCTTAGAAGTGCCACGTA 59.302 43.478 0.00 0.00 0.00 3.57
533 577 2.496070 TGCTATCTTAGAAGTGCCACGT 59.504 45.455 0.00 0.00 0.00 4.49
534 578 2.860735 GTGCTATCTTAGAAGTGCCACG 59.139 50.000 0.00 0.00 0.00 4.94
535 579 3.198872 GGTGCTATCTTAGAAGTGCCAC 58.801 50.000 0.00 0.00 0.00 5.01
536 580 2.837591 TGGTGCTATCTTAGAAGTGCCA 59.162 45.455 0.00 0.00 0.00 4.92
537 581 3.543680 TGGTGCTATCTTAGAAGTGCC 57.456 47.619 0.00 0.00 0.00 5.01
538 582 4.878397 ACAATGGTGCTATCTTAGAAGTGC 59.122 41.667 0.00 0.00 0.00 4.40
539 583 7.041721 TGTACAATGGTGCTATCTTAGAAGTG 58.958 38.462 0.00 0.00 0.00 3.16
540 584 7.182817 TGTACAATGGTGCTATCTTAGAAGT 57.817 36.000 0.00 0.00 0.00 3.01
541 585 7.307632 GCATGTACAATGGTGCTATCTTAGAAG 60.308 40.741 11.12 0.00 34.85 2.85
542 586 6.483307 GCATGTACAATGGTGCTATCTTAGAA 59.517 38.462 11.12 0.00 34.85 2.10
543 587 5.991606 GCATGTACAATGGTGCTATCTTAGA 59.008 40.000 11.12 0.00 34.85 2.10
544 588 5.180117 GGCATGTACAATGGTGCTATCTTAG 59.820 44.000 16.47 0.00 37.70 2.18
545 589 5.063204 GGCATGTACAATGGTGCTATCTTA 58.937 41.667 16.47 0.00 37.70 2.10
546 590 3.885297 GGCATGTACAATGGTGCTATCTT 59.115 43.478 16.47 0.00 37.70 2.40
547 591 3.480470 GGCATGTACAATGGTGCTATCT 58.520 45.455 16.47 0.00 37.70 1.98
548 592 2.554032 GGGCATGTACAATGGTGCTATC 59.446 50.000 16.47 3.12 37.70 2.08
549 593 2.175499 AGGGCATGTACAATGGTGCTAT 59.825 45.455 16.47 5.35 37.70 2.97
550 594 1.563879 AGGGCATGTACAATGGTGCTA 59.436 47.619 16.47 0.00 37.70 3.49
551 595 0.332632 AGGGCATGTACAATGGTGCT 59.667 50.000 16.47 0.00 37.70 4.40
552 596 2.051334 TAGGGCATGTACAATGGTGC 57.949 50.000 10.12 10.12 36.88 5.01
553 597 3.620488 ACTTAGGGCATGTACAATGGTG 58.380 45.455 0.00 0.00 0.00 4.17
554 598 5.444744 TTACTTAGGGCATGTACAATGGT 57.555 39.130 0.00 0.00 0.00 3.55
555 599 6.772716 AGAATTACTTAGGGCATGTACAATGG 59.227 38.462 0.00 0.00 0.00 3.16
556 600 7.807977 AGAATTACTTAGGGCATGTACAATG 57.192 36.000 0.00 0.12 0.00 2.82
557 601 8.686334 CAAAGAATTACTTAGGGCATGTACAAT 58.314 33.333 0.00 0.00 37.93 2.71
558 602 7.362574 GCAAAGAATTACTTAGGGCATGTACAA 60.363 37.037 0.00 0.00 37.93 2.41
559 603 6.094881 GCAAAGAATTACTTAGGGCATGTACA 59.905 38.462 0.00 0.00 37.93 2.90
560 604 6.094881 TGCAAAGAATTACTTAGGGCATGTAC 59.905 38.462 0.00 0.00 37.93 2.90
561 605 6.184068 TGCAAAGAATTACTTAGGGCATGTA 58.816 36.000 0.00 0.00 37.93 2.29
562 606 5.016173 TGCAAAGAATTACTTAGGGCATGT 58.984 37.500 0.00 0.00 37.93 3.21
563 607 5.126061 ACTGCAAAGAATTACTTAGGGCATG 59.874 40.000 0.00 0.00 38.54 4.06
564 608 5.126061 CACTGCAAAGAATTACTTAGGGCAT 59.874 40.000 0.00 0.00 38.54 4.40
565 609 4.458989 CACTGCAAAGAATTACTTAGGGCA 59.541 41.667 0.00 0.00 37.93 5.36
566 610 4.675408 GCACTGCAAAGAATTACTTAGGGC 60.675 45.833 0.00 0.00 37.93 5.19
567 611 4.458989 TGCACTGCAAAGAATTACTTAGGG 59.541 41.667 0.00 0.00 37.93 3.53
568 612 5.627499 TGCACTGCAAAGAATTACTTAGG 57.373 39.130 0.00 0.00 37.93 2.69
593 640 4.580167 GTCCATGGCTCATTGTTTAGCATA 59.420 41.667 6.96 0.00 40.61 3.14
638 686 9.436957 ACGAAAGAAATGTACTGAATCTAATGT 57.563 29.630 0.00 0.00 0.00 2.71
743 798 5.647589 TCGACTTATTATGCCATCGGTATC 58.352 41.667 0.00 0.00 0.00 2.24
749 804 5.445142 CGCATTCTCGACTTATTATGCCATC 60.445 44.000 0.00 0.00 36.03 3.51
846 924 3.118408 TCGTCTGGGGAAGTTGGAATATG 60.118 47.826 0.00 0.00 0.00 1.78
938 1030 6.385759 TGGGTGGAGAGATAGCTAAAAATACA 59.614 38.462 0.00 0.00 0.00 2.29
950 1042 1.618586 TCCGCTGGGTGGAGAGATA 59.381 57.895 0.00 0.00 37.29 1.98
958 1050 3.073735 AGAGAGCTCCGCTGGGTG 61.074 66.667 10.93 0.00 39.88 4.61
977 1069 1.202651 CGAGAGAGGGAGAGAGAGACC 60.203 61.905 0.00 0.00 0.00 3.85
978 1070 1.810412 GCGAGAGAGGGAGAGAGAGAC 60.810 61.905 0.00 0.00 0.00 3.36
981 1073 1.275421 TGGCGAGAGAGGGAGAGAGA 61.275 60.000 0.00 0.00 0.00 3.10
1065 1159 1.048160 TGATGGAGTGGGAGCGCATA 61.048 55.000 11.47 0.00 0.00 3.14
1093 1187 2.037053 CCGATGAGATCTGCGACCT 58.963 57.895 0.00 0.00 0.00 3.85
1159 1262 2.969238 CATCATCCTGGCGTCGGC 60.969 66.667 12.58 12.58 38.90 5.54
1160 1263 2.969238 GCATCATCCTGGCGTCGG 60.969 66.667 0.00 0.00 0.00 4.79
1162 1265 2.592861 GGGCATCATCCTGGCGTC 60.593 66.667 0.00 0.00 42.31 5.19
1164 1267 1.970114 GATGGGCATCATCCTGGCG 60.970 63.158 7.75 0.00 44.92 5.69
1165 1268 4.092343 GATGGGCATCATCCTGGC 57.908 61.111 7.75 0.00 44.92 4.85
1177 1280 2.505982 CACGTAGGCCTGGATGGG 59.494 66.667 17.99 0.00 36.00 4.00
1266 1369 4.208686 GGCGACTGCGAGGGGTAG 62.209 72.222 0.00 0.00 44.10 3.18
1420 1542 4.208686 GCGGTAGGAGGACGGCTG 62.209 72.222 0.00 0.00 41.17 4.85
1641 1778 3.496309 CTGCAGGTGGGTGGAAGCA 62.496 63.158 5.57 0.00 34.77 3.91
1941 2093 2.774774 CTTGCTTCGTCGCTCTGC 59.225 61.111 0.00 0.00 0.00 4.26
1942 2094 1.560004 TTGCTTGCTTCGTCGCTCTG 61.560 55.000 0.00 0.00 0.00 3.35
1943 2095 1.287730 CTTGCTTGCTTCGTCGCTCT 61.288 55.000 0.00 0.00 0.00 4.09
1944 2096 1.131420 CTTGCTTGCTTCGTCGCTC 59.869 57.895 0.00 0.00 0.00 5.03
1945 2097 2.959357 GCTTGCTTGCTTCGTCGCT 61.959 57.895 0.00 0.00 0.00 4.93
1946 2098 2.500582 GCTTGCTTGCTTCGTCGC 60.501 61.111 0.00 0.00 0.00 5.19
1947 2099 0.110056 ATTGCTTGCTTGCTTCGTCG 60.110 50.000 3.47 0.00 0.00 5.12
1948 2100 1.611043 GATTGCTTGCTTGCTTCGTC 58.389 50.000 3.47 0.00 0.00 4.20
1949 2101 0.242017 GGATTGCTTGCTTGCTTCGT 59.758 50.000 3.47 0.00 0.00 3.85
1950 2102 0.795735 CGGATTGCTTGCTTGCTTCG 60.796 55.000 3.47 0.00 0.00 3.79
1951 2103 0.457337 CCGGATTGCTTGCTTGCTTC 60.457 55.000 0.00 1.35 0.00 3.86
1952 2104 1.588082 CCGGATTGCTTGCTTGCTT 59.412 52.632 0.00 0.00 0.00 3.91
1953 2105 2.998279 GCCGGATTGCTTGCTTGCT 61.998 57.895 5.05 0.00 0.00 3.91
1993 2145 0.396417 CCACTGGAACCAACCAACCA 60.396 55.000 0.00 0.00 39.59 3.67
2024 2176 1.675310 CCAGCAATCACAAGCCCGA 60.675 57.895 0.00 0.00 0.00 5.14
2111 2266 2.159324 CGAGCAAGAGCATAGACAGACA 60.159 50.000 0.00 0.00 45.49 3.41
2116 2271 0.461961 ACCCGAGCAAGAGCATAGAC 59.538 55.000 0.00 0.00 45.49 2.59
2117 2272 0.461548 CACCCGAGCAAGAGCATAGA 59.538 55.000 0.00 0.00 45.49 1.98
2118 2273 0.531532 CCACCCGAGCAAGAGCATAG 60.532 60.000 0.00 0.00 45.49 2.23
2119 2274 1.522092 CCACCCGAGCAAGAGCATA 59.478 57.895 0.00 0.00 45.49 3.14
2120 2275 2.270205 CCACCCGAGCAAGAGCAT 59.730 61.111 0.00 0.00 45.49 3.79
2121 2276 4.020617 CCCACCCGAGCAAGAGCA 62.021 66.667 0.00 0.00 45.49 4.26
2122 2277 2.579684 CTACCCACCCGAGCAAGAGC 62.580 65.000 0.00 0.00 42.56 4.09
2123 2278 1.258445 ACTACCCACCCGAGCAAGAG 61.258 60.000 0.00 0.00 0.00 2.85
2124 2279 0.834687 AACTACCCACCCGAGCAAGA 60.835 55.000 0.00 0.00 0.00 3.02
2125 2280 0.899720 TAACTACCCACCCGAGCAAG 59.100 55.000 0.00 0.00 0.00 4.01
2126 2281 1.575419 ATAACTACCCACCCGAGCAA 58.425 50.000 0.00 0.00 0.00 3.91
2127 2282 1.575419 AATAACTACCCACCCGAGCA 58.425 50.000 0.00 0.00 0.00 4.26
2128 2283 2.704464 AAATAACTACCCACCCGAGC 57.296 50.000 0.00 0.00 0.00 5.03
2129 2284 3.943381 GGAAAAATAACTACCCACCCGAG 59.057 47.826 0.00 0.00 0.00 4.63
2130 2285 3.588396 AGGAAAAATAACTACCCACCCGA 59.412 43.478 0.00 0.00 0.00 5.14
2131 2286 3.692593 CAGGAAAAATAACTACCCACCCG 59.307 47.826 0.00 0.00 0.00 5.28
2132 2287 3.446161 GCAGGAAAAATAACTACCCACCC 59.554 47.826 0.00 0.00 0.00 4.61
2133 2288 4.157840 CAGCAGGAAAAATAACTACCCACC 59.842 45.833 0.00 0.00 0.00 4.61
2134 2289 4.765339 ACAGCAGGAAAAATAACTACCCAC 59.235 41.667 0.00 0.00 0.00 4.61
2179 2375 4.681942 TGAAACAAACAAAAAGACACACCG 59.318 37.500 0.00 0.00 0.00 4.94
2230 2430 2.900546 AGTAGTAGCTGGCTCAGTTTGT 59.099 45.455 0.00 0.00 33.43 2.83
2236 2436 5.892119 ACAATAACTAGTAGTAGCTGGCTCA 59.108 40.000 2.50 0.00 0.00 4.26
2252 2452 5.917462 AGCAAGCCAAAGAAAACAATAACT 58.083 33.333 0.00 0.00 0.00 2.24
2262 2462 3.006110 CCAAGATCAAGCAAGCCAAAGAA 59.994 43.478 0.00 0.00 0.00 2.52
2264 2464 2.298163 ACCAAGATCAAGCAAGCCAAAG 59.702 45.455 0.00 0.00 0.00 2.77
2265 2465 2.318908 ACCAAGATCAAGCAAGCCAAA 58.681 42.857 0.00 0.00 0.00 3.28
2268 2468 1.403323 GCTACCAAGATCAAGCAAGCC 59.597 52.381 0.00 0.00 35.05 4.35
2269 2469 1.403323 GGCTACCAAGATCAAGCAAGC 59.597 52.381 0.00 0.00 36.68 4.01
2270 2470 2.996631 AGGCTACCAAGATCAAGCAAG 58.003 47.619 0.00 0.00 36.68 4.01
2292 2496 6.595326 AGCTAAATTTTGCCCTATTTTCTTGC 59.405 34.615 18.94 0.00 0.00 4.01
2367 2592 0.170339 CCATGCCATGCTATGCGATG 59.830 55.000 0.00 0.00 0.00 3.84
2398 2631 1.226773 GCATCATCGGTTGCTTGGC 60.227 57.895 0.00 0.00 36.90 4.52
2414 2647 1.135112 AGTAATGAGTGCGACGATGCA 60.135 47.619 0.00 2.31 43.95 3.96
2420 2653 2.376956 CTAGCGAGTAATGAGTGCGAC 58.623 52.381 0.00 0.00 0.00 5.19
2453 2686 7.545615 GCTATTTTGTTGCTTATGGCTTTTACT 59.454 33.333 0.00 0.00 42.39 2.24
2454 2687 7.330700 TGCTATTTTGTTGCTTATGGCTTTTAC 59.669 33.333 0.00 0.00 42.39 2.01
2455 2688 7.382110 TGCTATTTTGTTGCTTATGGCTTTTA 58.618 30.769 0.00 0.00 42.39 1.52
2456 2689 6.229733 TGCTATTTTGTTGCTTATGGCTTTT 58.770 32.000 0.00 0.00 42.39 2.27
2502 2751 1.683790 CGATCGACCCAACAACGCTC 61.684 60.000 10.26 0.00 0.00 5.03
2504 2753 2.736682 CCGATCGACCCAACAACGC 61.737 63.158 18.66 0.00 0.00 4.84
2505 2754 1.373748 ACCGATCGACCCAACAACG 60.374 57.895 18.66 0.00 0.00 4.10
2506 2755 0.320073 TCACCGATCGACCCAACAAC 60.320 55.000 18.66 0.00 0.00 3.32
2507 2756 0.611200 ATCACCGATCGACCCAACAA 59.389 50.000 18.66 0.00 0.00 2.83
2509 2758 2.973420 GATCACCGATCGACCCAAC 58.027 57.895 18.66 0.00 29.12 3.77
2518 2767 0.105039 GAAAGGAGGCGATCACCGAT 59.895 55.000 0.00 0.00 41.76 4.18
2520 2769 0.528684 GAGAAAGGAGGCGATCACCG 60.529 60.000 0.00 0.00 42.21 4.94
2521 2770 0.827368 AGAGAAAGGAGGCGATCACC 59.173 55.000 0.00 0.00 0.00 4.02
2522 2771 1.933247 CAGAGAAAGGAGGCGATCAC 58.067 55.000 0.00 0.00 0.00 3.06
2523 2772 0.176680 GCAGAGAAAGGAGGCGATCA 59.823 55.000 0.00 0.00 0.00 2.92
2540 2832 1.004080 GGAGCACAAGAGCAGAGCA 60.004 57.895 0.00 0.00 36.85 4.26
2541 2833 1.020333 CAGGAGCACAAGAGCAGAGC 61.020 60.000 0.00 0.00 36.85 4.09
2566 2858 2.489275 GCAGGTGGTGGTGTTGGTG 61.489 63.158 0.00 0.00 0.00 4.17
2567 2859 2.123897 GCAGGTGGTGGTGTTGGT 60.124 61.111 0.00 0.00 0.00 3.67
2568 2860 2.912025 GGCAGGTGGTGGTGTTGG 60.912 66.667 0.00 0.00 0.00 3.77
2569 2861 2.195567 CAGGCAGGTGGTGGTGTTG 61.196 63.158 0.00 0.00 0.00 3.33
2570 2862 2.195683 CAGGCAGGTGGTGGTGTT 59.804 61.111 0.00 0.00 0.00 3.32
2571 2863 4.586235 GCAGGCAGGTGGTGGTGT 62.586 66.667 0.00 0.00 0.00 4.16
2579 2871 0.323178 CAGGAGAAATGCAGGCAGGT 60.323 55.000 0.00 0.00 0.00 4.00
2689 2990 4.373116 ACCGCACGGCACAGTAGG 62.373 66.667 9.43 0.00 39.32 3.18
2690 2991 2.809601 GACCGCACGGCACAGTAG 60.810 66.667 9.43 0.00 39.32 2.57
2691 2992 4.710695 CGACCGCACGGCACAGTA 62.711 66.667 9.43 0.00 39.32 2.74
2720 3021 0.031449 ATTTGTTTTGTGCCGGACGG 59.969 50.000 5.05 6.35 38.57 4.79
2721 3022 1.520590 CAATTTGTTTTGTGCCGGACG 59.479 47.619 5.05 0.00 0.00 4.79
2722 3023 1.260297 GCAATTTGTTTTGTGCCGGAC 59.740 47.619 5.05 0.46 0.00 4.79
2723 3024 1.134699 TGCAATTTGTTTTGTGCCGGA 60.135 42.857 5.05 0.00 36.12 5.14
2724 3025 1.293924 TGCAATTTGTTTTGTGCCGG 58.706 45.000 0.00 0.00 36.12 6.13
2725 3026 3.289911 CAATGCAATTTGTTTTGTGCCG 58.710 40.909 0.00 0.00 31.22 5.69
2726 3027 3.044286 GCAATGCAATTTGTTTTGTGCC 58.956 40.909 0.00 0.00 31.22 5.01
2727 3028 3.692576 TGCAATGCAATTTGTTTTGTGC 58.307 36.364 5.01 9.13 34.76 4.57
2728 3029 5.971792 TCAATGCAATGCAATTTGTTTTGTG 59.028 32.000 13.45 0.00 43.62 3.33
2729 3030 6.132791 TCAATGCAATGCAATTTGTTTTGT 57.867 29.167 13.45 0.00 43.62 2.83
2730 3031 7.148885 GGATTCAATGCAATGCAATTTGTTTTG 60.149 33.333 13.45 10.50 43.62 2.44
2731 3032 6.864165 GGATTCAATGCAATGCAATTTGTTTT 59.136 30.769 13.45 0.00 43.62 2.43
2732 3033 6.207810 AGGATTCAATGCAATGCAATTTGTTT 59.792 30.769 13.45 5.48 43.62 2.83
2733 3034 5.708230 AGGATTCAATGCAATGCAATTTGTT 59.292 32.000 13.45 5.83 43.62 2.83
2734 3035 5.123186 CAGGATTCAATGCAATGCAATTTGT 59.877 36.000 13.45 0.00 43.62 2.83
2735 3036 5.568482 CAGGATTCAATGCAATGCAATTTG 58.432 37.500 13.45 13.56 43.62 2.32
2736 3037 4.095782 GCAGGATTCAATGCAATGCAATTT 59.904 37.500 13.45 0.00 43.62 1.82
2737 3038 3.625764 GCAGGATTCAATGCAATGCAATT 59.374 39.130 13.45 4.53 43.62 2.32
2738 3039 3.118408 AGCAGGATTCAATGCAATGCAAT 60.118 39.130 13.45 0.00 43.62 3.56
2739 3040 2.235155 AGCAGGATTCAATGCAATGCAA 59.765 40.909 13.45 0.00 43.62 4.08
2740 3041 1.828595 AGCAGGATTCAATGCAATGCA 59.171 42.857 11.44 11.44 45.01 3.96
2760 3061 0.037697 CCGAGACGGTCATTTGGTGA 60.038 55.000 11.27 0.00 42.73 4.02
2761 3062 2.456000 CCGAGACGGTCATTTGGTG 58.544 57.895 11.27 0.00 42.73 4.17
2775 3076 4.378459 GGAGACACTTTATTTGTTGCCGAG 60.378 45.833 0.00 0.00 0.00 4.63
2777 3078 3.666902 CGGAGACACTTTATTTGTTGCCG 60.667 47.826 0.00 0.00 37.50 5.69
2778 3079 3.500680 TCGGAGACACTTTATTTGTTGCC 59.499 43.478 0.00 0.00 0.00 4.52
2779 3080 4.742438 TCGGAGACACTTTATTTGTTGC 57.258 40.909 0.00 0.00 0.00 4.17
2792 3093 3.210227 TGAAAGCAAACATTCGGAGACA 58.790 40.909 0.00 0.00 34.32 3.41
2794 3095 4.378356 CGATTGAAAGCAAACATTCGGAGA 60.378 41.667 0.00 0.00 37.59 3.71
2798 3099 2.025571 CGCGATTGAAAGCAAACATTCG 59.974 45.455 0.00 0.00 40.43 3.34
2805 3106 3.258228 TCTGTATCGCGATTGAAAGCAA 58.742 40.909 28.81 2.90 38.60 3.91
2806 3107 2.860136 CTCTGTATCGCGATTGAAAGCA 59.140 45.455 28.81 14.68 0.00 3.91
2807 3108 2.348032 GCTCTGTATCGCGATTGAAAGC 60.348 50.000 28.81 24.46 0.00 3.51
2808 3109 3.119291 AGCTCTGTATCGCGATTGAAAG 58.881 45.455 28.81 19.46 0.00 2.62
2820 3121 5.822132 AATCTTCATGGCTAGCTCTGTAT 57.178 39.130 15.72 5.81 0.00 2.29
2826 3127 5.011533 CAGTAGGTAATCTTCATGGCTAGCT 59.988 44.000 15.72 0.00 0.00 3.32
2827 3128 5.233988 CAGTAGGTAATCTTCATGGCTAGC 58.766 45.833 6.04 6.04 0.00 3.42
2828 3129 5.233988 GCAGTAGGTAATCTTCATGGCTAG 58.766 45.833 0.00 0.00 0.00 3.42
2829 3130 4.262036 CGCAGTAGGTAATCTTCATGGCTA 60.262 45.833 0.00 0.00 0.00 3.93
2830 3131 3.493350 CGCAGTAGGTAATCTTCATGGCT 60.493 47.826 0.00 0.00 0.00 4.75
2831 3132 2.802816 CGCAGTAGGTAATCTTCATGGC 59.197 50.000 0.00 0.00 0.00 4.40
2832 3133 4.060038 ACGCAGTAGGTAATCTTCATGG 57.940 45.455 0.00 0.00 41.94 3.66
2833 3134 4.870426 ACAACGCAGTAGGTAATCTTCATG 59.130 41.667 0.00 0.00 45.00 3.07
2834 3135 5.086104 ACAACGCAGTAGGTAATCTTCAT 57.914 39.130 0.00 0.00 45.00 2.57
2850 3151 2.817538 ACAGTGTACAACAACAACGC 57.182 45.000 0.00 0.00 0.00 4.84
2852 3153 4.871557 TCCTGTACAGTGTACAACAACAAC 59.128 41.667 30.53 8.57 0.00 3.32
2856 3157 5.069914 ACAGATCCTGTACAGTGTACAACAA 59.930 40.000 30.53 20.74 43.46 2.83
2859 3160 4.587262 ACACAGATCCTGTACAGTGTACAA 59.413 41.667 30.53 20.45 43.43 2.41
2863 3164 3.193691 GCTACACAGATCCTGTACAGTGT 59.806 47.826 21.18 18.93 43.43 3.55
2870 3171 4.040952 AGTGAAAAGCTACACAGATCCTGT 59.959 41.667 16.80 0.00 46.51 4.00
2875 3176 6.543831 ACTTGAAAGTGAAAAGCTACACAGAT 59.456 34.615 16.80 6.16 37.98 2.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.