Multiple sequence alignment - TraesCS2B01G431700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G431700 chr2B 100.000 3855 0 0 1 3855 620644186 620640332 0.000000e+00 7119.0
1 TraesCS2B01G431700 chr2B 96.063 127 5 0 3340 3466 353470314 353470440 1.400000e-49 207.0
2 TraesCS2B01G431700 chr2D 92.046 3382 157 43 1 3341 524562767 524566077 0.000000e+00 4652.0
3 TraesCS2B01G431700 chr2D 94.022 184 9 1 3461 3644 524566072 524566253 1.050000e-70 278.0
4 TraesCS2B01G431700 chr2D 98.214 56 1 0 3800 3855 524566245 524566300 8.810000e-17 99.0
5 TraesCS2B01G431700 chr2A 90.574 1655 87 33 618 2243 670218668 670220282 0.000000e+00 2128.0
6 TraesCS2B01G431700 chr2A 93.527 1066 32 11 2288 3341 670220292 670221332 0.000000e+00 1552.0
7 TraesCS2B01G431700 chr2A 84.290 331 20 16 1 304 670218285 670218610 1.050000e-75 294.0
8 TraesCS2B01G431700 chr2A 95.161 186 6 3 3462 3644 670221328 670221513 1.350000e-74 291.0
9 TraesCS2B01G431700 chr2A 94.012 167 8 2 3643 3808 48844074 48844239 6.390000e-63 252.0
10 TraesCS2B01G431700 chr2A 87.500 160 16 4 3312 3470 221201440 221201284 8.510000e-42 182.0
11 TraesCS2B01G431700 chr2A 96.429 56 2 0 3800 3855 670221505 670221560 4.100000e-15 93.5
12 TraesCS2B01G431700 chr7B 96.835 158 5 0 3644 3801 548474716 548474873 8.210000e-67 265.0
13 TraesCS2B01G431700 chr7B 81.871 171 26 5 2061 2229 412903061 412902894 5.190000e-29 139.0
14 TraesCS2B01G431700 chr3D 97.386 153 4 0 3644 3796 540258218 540258370 1.060000e-65 261.0
15 TraesCS2B01G431700 chr3D 93.333 135 8 1 3339 3473 313287003 313286870 8.450000e-47 198.0
16 TraesCS2B01G431700 chrUn 96.203 158 6 0 3644 3801 295608461 295608304 3.820000e-65 259.0
17 TraesCS2B01G431700 chr5B 96.226 159 4 2 3644 3801 307399740 307399897 3.820000e-65 259.0
18 TraesCS2B01G431700 chr5B 92.754 138 10 0 3339 3476 567933081 567933218 2.350000e-47 200.0
19 TraesCS2B01G431700 chr3B 96.203 158 6 0 3644 3801 5743597 5743440 3.820000e-65 259.0
20 TraesCS2B01G431700 chr3B 95.276 127 6 0 3340 3466 62947365 62947239 6.530000e-48 202.0
21 TraesCS2B01G431700 chr1B 95.152 165 6 2 3644 3807 432799524 432799361 3.820000e-65 259.0
22 TraesCS2B01G431700 chr1B 95.092 163 7 1 3644 3806 351236618 351236457 4.940000e-64 255.0
23 TraesCS2B01G431700 chr1B 94.574 129 7 0 3338 3466 203424313 203424185 2.350000e-47 200.0
24 TraesCS2B01G431700 chr1B 91.489 141 10 2 3327 3466 681792501 681792362 3.930000e-45 193.0
25 TraesCS2B01G431700 chr6D 93.491 169 9 2 3633 3800 14493218 14493051 2.300000e-62 250.0
26 TraesCS2B01G431700 chr4A 95.385 130 6 0 3340 3469 652852364 652852235 1.400000e-49 207.0
27 TraesCS2B01G431700 chr3A 93.284 134 9 0 3338 3471 13008823 13008956 8.450000e-47 198.0
28 TraesCS2B01G431700 chr7D 83.041 171 24 5 2061 2229 403645306 403645139 2.400000e-32 150.0
29 TraesCS2B01G431700 chr7A 82.456 171 25 5 2061 2229 462301470 462301303 1.120000e-30 145.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G431700 chr2B 620640332 620644186 3854 True 7119.000000 7119 100.000000 1 3855 1 chr2B.!!$R1 3854
1 TraesCS2B01G431700 chr2D 524562767 524566300 3533 False 1676.333333 4652 94.760667 1 3855 3 chr2D.!!$F1 3854
2 TraesCS2B01G431700 chr2A 670218285 670221560 3275 False 871.700000 2128 91.996200 1 3855 5 chr2A.!!$F2 3854

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
763 804 0.179145 CGCCTCGTTCGTAGTCCAAT 60.179 55.0 0.0 0.0 0.0 3.16 F
1316 1368 1.078709 ATCATTCTTCGTGTGTGCGG 58.921 50.0 0.0 0.0 0.0 5.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1861 1933 0.036671 GACGAACCCGGGTGATTTCT 60.037 55.0 31.05 10.73 40.78 2.52 R
2858 2936 0.179018 GGTGCTGGAAACTGTCTGGT 60.179 55.0 0.00 0.00 0.00 4.00 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
237 256 3.308595 ACGCACGTCATAAACATACATGG 59.691 43.478 0.00 0.00 0.00 3.66
252 271 3.817709 ACATGGGTTTTCTGTTTGGTG 57.182 42.857 0.00 0.00 0.00 4.17
253 272 3.103742 ACATGGGTTTTCTGTTTGGTGT 58.896 40.909 0.00 0.00 0.00 4.16
254 273 4.282496 ACATGGGTTTTCTGTTTGGTGTA 58.718 39.130 0.00 0.00 0.00 2.90
255 274 4.098807 ACATGGGTTTTCTGTTTGGTGTAC 59.901 41.667 0.00 0.00 0.00 2.90
260 297 5.479027 GGGTTTTCTGTTTGGTGTACCATAT 59.521 40.000 4.31 0.00 46.97 1.78
268 305 4.316205 TTGGTGTACCATATACTGCTCG 57.684 45.455 4.31 0.00 46.97 5.03
283 320 2.926200 CTGCTCGATCGATGTGAAAACT 59.074 45.455 19.78 0.00 0.00 2.66
285 322 4.682787 TGCTCGATCGATGTGAAAACTAT 58.317 39.130 19.78 0.00 0.00 2.12
290 327 7.198306 TCGATCGATGTGAAAACTATAGCTA 57.802 36.000 15.15 0.00 0.00 3.32
335 372 4.345257 ACTGATGTGTGTGTAAAGAGGTCT 59.655 41.667 0.00 0.00 0.00 3.85
339 376 3.633525 TGTGTGTGTAAAGAGGTCTACGT 59.366 43.478 0.00 0.00 0.00 3.57
340 377 4.821260 TGTGTGTGTAAAGAGGTCTACGTA 59.179 41.667 0.00 0.00 0.00 3.57
401 438 6.691754 TGCAAACAGAAAGAGACATTACAA 57.308 33.333 0.00 0.00 0.00 2.41
412 449 7.540474 AAGAGACATTACAAGGTTCACTAGA 57.460 36.000 0.00 0.00 0.00 2.43
443 480 9.595823 GTGACCTTATTACTTATAGCTGTGAAA 57.404 33.333 0.00 0.00 0.00 2.69
468 505 2.043652 ATGGGCAGTGGGACATGC 60.044 61.111 0.00 0.00 44.52 4.06
475 512 0.962356 CAGTGGGACATGCTCCAACC 60.962 60.000 14.67 3.80 43.76 3.77
507 548 2.581354 GCCGCTCATCAGGTCTGT 59.419 61.111 0.00 0.00 0.00 3.41
629 670 3.177600 CGGAAGCATGACCGTTGG 58.822 61.111 14.98 0.00 43.53 3.77
630 671 2.398554 CGGAAGCATGACCGTTGGG 61.399 63.158 14.98 0.00 43.53 4.12
663 704 6.347859 ACCAAAACACAACTTCCAAAACTA 57.652 33.333 0.00 0.00 0.00 2.24
664 705 6.160684 ACCAAAACACAACTTCCAAAACTAC 58.839 36.000 0.00 0.00 0.00 2.73
705 746 0.314935 AGCATTTGGACTTTGGTGCG 59.685 50.000 0.00 0.00 37.63 5.34
755 796 4.117661 GCTCCTCGCCTCGTTCGT 62.118 66.667 0.00 0.00 0.00 3.85
761 802 1.642037 CTCGCCTCGTTCGTAGTCCA 61.642 60.000 0.00 0.00 0.00 4.02
763 804 0.179145 CGCCTCGTTCGTAGTCCAAT 60.179 55.000 0.00 0.00 0.00 3.16
764 805 1.557651 GCCTCGTTCGTAGTCCAATC 58.442 55.000 0.00 0.00 0.00 2.67
765 806 1.134560 GCCTCGTTCGTAGTCCAATCT 59.865 52.381 0.00 0.00 0.00 2.40
810 852 1.449778 GCCGTGGGAAAGAGCCTAC 60.450 63.158 0.00 0.00 36.19 3.18
811 853 1.900545 GCCGTGGGAAAGAGCCTACT 61.901 60.000 0.00 0.00 37.28 2.57
812 854 1.481871 CCGTGGGAAAGAGCCTACTA 58.518 55.000 0.00 0.00 37.28 1.82
846 888 2.324541 GCTCTCAGGGTCTCACCATAT 58.675 52.381 0.00 0.00 41.02 1.78
880 922 2.369860 TGCATGTGAAGAAGGTGAGAGT 59.630 45.455 0.00 0.00 0.00 3.24
909 951 1.889829 ACTGCGAGTGAAAGCTAGAGT 59.110 47.619 0.00 0.00 0.00 3.24
911 953 1.886542 TGCGAGTGAAAGCTAGAGTGA 59.113 47.619 0.00 0.00 0.00 3.41
945 997 4.887071 AGCTAGGAACACAGATAGAGAGTG 59.113 45.833 0.00 0.00 39.12 3.51
953 1005 4.398988 ACACAGATAGAGAGTGCTCAAGAG 59.601 45.833 1.82 0.00 43.81 2.85
967 1019 2.938451 CTCAAGAGCACTGTCACACAAA 59.062 45.455 0.00 0.00 0.00 2.83
980 1032 2.099446 ACAAACACGCACACGCAC 59.901 55.556 0.00 0.00 45.53 5.34
996 1048 1.734359 GCACGAGATCGACGCTGAAC 61.734 60.000 9.58 0.00 43.02 3.18
1157 1209 2.813908 GATGGTGGTGGACGCGAC 60.814 66.667 15.93 6.56 0.00 5.19
1158 1210 4.735132 ATGGTGGTGGACGCGACG 62.735 66.667 15.93 0.00 0.00 5.12
1265 1317 1.806623 CGGCACCTACATGTAAGCTCC 60.807 57.143 18.40 11.41 0.00 4.70
1266 1318 1.486726 GGCACCTACATGTAAGCTCCT 59.513 52.381 18.40 0.00 0.00 3.69
1267 1319 2.483889 GGCACCTACATGTAAGCTCCTC 60.484 54.545 18.40 4.62 0.00 3.71
1288 1340 3.878103 TCTAGCTTTCGAGTAGCTACCTG 59.122 47.826 20.31 12.91 46.66 4.00
1315 1367 1.726248 TCATCATTCTTCGTGTGTGCG 59.274 47.619 0.00 0.00 0.00 5.34
1316 1368 1.078709 ATCATTCTTCGTGTGTGCGG 58.921 50.000 0.00 0.00 0.00 5.69
1508 1560 2.663520 CGCACCTACAACACCGCA 60.664 61.111 0.00 0.00 0.00 5.69
1591 1646 1.990563 GTGGTCCATGAACGTACGAAG 59.009 52.381 24.41 6.26 0.00 3.79
1735 1801 2.689983 CAAAAGCTTCAGGGTCACAAGT 59.310 45.455 0.00 0.00 0.00 3.16
1737 1803 1.131638 AGCTTCAGGGTCACAAGTCA 58.868 50.000 0.00 0.00 0.00 3.41
1738 1804 1.202698 AGCTTCAGGGTCACAAGTCAC 60.203 52.381 0.00 0.00 0.00 3.67
1739 1805 1.475034 GCTTCAGGGTCACAAGTCACA 60.475 52.381 0.00 0.00 0.00 3.58
1740 1806 2.213499 CTTCAGGGTCACAAGTCACAC 58.787 52.381 0.00 0.00 0.00 3.82
1741 1807 1.199615 TCAGGGTCACAAGTCACACA 58.800 50.000 0.00 0.00 0.00 3.72
1742 1808 1.768275 TCAGGGTCACAAGTCACACAT 59.232 47.619 0.00 0.00 0.00 3.21
1800 1868 1.202722 TCCCTCCCTGTTCGTTTTGAC 60.203 52.381 0.00 0.00 0.00 3.18
1861 1933 2.269978 GCTTGGAGCAGGCAAATCA 58.730 52.632 0.00 0.00 41.89 2.57
1862 1934 0.172803 GCTTGGAGCAGGCAAATCAG 59.827 55.000 0.00 0.00 41.89 2.90
1863 1935 1.830279 CTTGGAGCAGGCAAATCAGA 58.170 50.000 0.00 0.00 0.00 3.27
1864 1936 2.165167 CTTGGAGCAGGCAAATCAGAA 58.835 47.619 0.00 0.00 0.00 3.02
1945 2018 2.594592 AGCAAACACGAGGCCACC 60.595 61.111 5.01 0.00 0.00 4.61
1972 2045 1.067142 GTGACTCGTGAGGTTGGCATA 60.067 52.381 1.43 0.00 0.00 3.14
1974 2047 2.000447 GACTCGTGAGGTTGGCATAAC 59.000 52.381 1.43 0.00 0.00 1.89
1975 2048 1.346395 ACTCGTGAGGTTGGCATAACA 59.654 47.619 1.43 0.00 0.00 2.41
1976 2049 1.732259 CTCGTGAGGTTGGCATAACAC 59.268 52.381 5.59 0.00 0.00 3.32
1977 2050 0.802494 CGTGAGGTTGGCATAACACC 59.198 55.000 0.00 0.00 0.00 4.16
1978 2051 1.173913 GTGAGGTTGGCATAACACCC 58.826 55.000 2.48 0.00 0.00 4.61
1981 2054 1.974343 GGTTGGCATAACACCCGCA 60.974 57.895 5.59 0.00 0.00 5.69
1997 2070 0.042188 CGCAACTTGACTGACGTTGG 60.042 55.000 0.00 0.00 38.67 3.77
2003 2076 1.602377 CTTGACTGACGTTGGGTTTCC 59.398 52.381 0.00 0.00 0.00 3.13
2004 2077 0.834612 TGACTGACGTTGGGTTTCCT 59.165 50.000 0.00 0.00 0.00 3.36
2005 2078 1.226746 GACTGACGTTGGGTTTCCTG 58.773 55.000 0.00 0.00 0.00 3.86
2006 2079 0.544697 ACTGACGTTGGGTTTCCTGT 59.455 50.000 0.00 0.00 0.00 4.00
2007 2080 0.944386 CTGACGTTGGGTTTCCTGTG 59.056 55.000 0.00 0.00 0.00 3.66
2008 2081 0.253610 TGACGTTGGGTTTCCTGTGT 59.746 50.000 0.00 0.00 0.00 3.72
2009 2082 0.661020 GACGTTGGGTTTCCTGTGTG 59.339 55.000 0.00 0.00 0.00 3.82
2010 2083 0.750182 ACGTTGGGTTTCCTGTGTGG 60.750 55.000 0.00 0.00 37.10 4.17
2012 2085 1.480789 GTTGGGTTTCCTGTGTGGTT 58.519 50.000 0.00 0.00 37.07 3.67
2013 2086 1.828595 GTTGGGTTTCCTGTGTGGTTT 59.171 47.619 0.00 0.00 37.07 3.27
2014 2087 1.770294 TGGGTTTCCTGTGTGGTTTC 58.230 50.000 0.00 0.00 37.07 2.78
2015 2088 1.006043 TGGGTTTCCTGTGTGGTTTCA 59.994 47.619 0.00 0.00 37.07 2.69
2016 2089 1.407618 GGGTTTCCTGTGTGGTTTCAC 59.592 52.381 0.00 0.00 43.87 3.18
2017 2090 2.375146 GGTTTCCTGTGTGGTTTCACT 58.625 47.619 0.00 0.00 43.94 3.41
2063 2136 4.387343 CCAGGCATGCAAGGGGGT 62.387 66.667 21.36 0.00 0.00 4.95
2234 2307 1.684248 GGACGCTCCCTCTACAAGGTA 60.684 57.143 0.00 0.00 44.56 3.08
2243 2316 2.751259 CCTCTACAAGGTACGTACTGCA 59.249 50.000 24.07 6.68 40.67 4.41
2244 2317 3.427233 CCTCTACAAGGTACGTACTGCAC 60.427 52.174 24.07 8.50 40.67 4.57
2265 2341 2.327002 CTGCGTGCACCACATATGCC 62.327 60.000 12.15 0.00 42.69 4.40
2268 2344 2.828095 TGCACCACATATGCCGCC 60.828 61.111 1.58 0.00 42.69 6.13
2272 2348 2.906897 CCACATATGCCGCCCACC 60.907 66.667 1.58 0.00 0.00 4.61
2273 2349 3.279116 CACATATGCCGCCCACCG 61.279 66.667 1.58 0.00 0.00 4.94
2311 2387 5.674933 TTACATATGTGTGTTGCGTTGAA 57.325 34.783 18.81 0.00 39.39 2.69
2314 2390 6.435430 ACATATGTGTGTTGCGTTGAATAT 57.565 33.333 7.78 0.00 37.14 1.28
2315 2391 7.546778 ACATATGTGTGTTGCGTTGAATATA 57.453 32.000 7.78 0.00 37.14 0.86
2318 2394 5.871465 TGTGTGTTGCGTTGAATATATGT 57.129 34.783 0.00 0.00 0.00 2.29
2319 2395 6.969828 TGTGTGTTGCGTTGAATATATGTA 57.030 33.333 0.00 0.00 0.00 2.29
2320 2396 7.546778 TGTGTGTTGCGTTGAATATATGTAT 57.453 32.000 0.00 0.00 0.00 2.29
2321 2397 8.649973 TGTGTGTTGCGTTGAATATATGTATA 57.350 30.769 0.00 0.00 0.00 1.47
2322 2398 8.544597 TGTGTGTTGCGTTGAATATATGTATAC 58.455 33.333 0.00 0.00 0.00 1.47
2323 2399 7.734297 GTGTGTTGCGTTGAATATATGTATACG 59.266 37.037 0.00 0.00 0.00 3.06
2324 2400 7.435784 TGTGTTGCGTTGAATATATGTATACGT 59.564 33.333 2.56 2.56 0.00 3.57
2325 2401 7.734297 GTGTTGCGTTGAATATATGTATACGTG 59.266 37.037 7.89 0.00 0.00 4.49
2326 2402 6.384178 TGCGTTGAATATATGTATACGTGC 57.616 37.500 7.89 0.15 0.00 5.34
2327 2403 6.153756 TGCGTTGAATATATGTATACGTGCT 58.846 36.000 7.89 0.00 0.00 4.40
2349 2427 2.405892 GCTCATGCTGAAAACACGTT 57.594 45.000 0.00 0.00 36.03 3.99
2350 2428 2.731217 GCTCATGCTGAAAACACGTTT 58.269 42.857 0.00 0.00 36.03 3.60
2548 2626 3.503363 ACACCTACTTCGACAACGTCATA 59.497 43.478 0.00 0.00 40.69 2.15
2607 2685 5.637810 GCAACAAGAGCATGTAACTACTACA 59.362 40.000 0.00 0.00 44.65 2.74
2608 2686 6.401153 GCAACAAGAGCATGTAACTACTACAC 60.401 42.308 0.00 0.00 43.35 2.90
2612 2690 5.017490 AGAGCATGTAACTACTACACCACT 58.983 41.667 0.00 0.00 43.35 4.00
2614 2692 6.319152 AGAGCATGTAACTACTACACCACTAG 59.681 42.308 0.00 0.00 43.35 2.57
2821 2899 1.302832 CCTGGGCAAGAGCTTCGTT 60.303 57.895 0.00 0.00 41.70 3.85
2858 2936 3.056536 GCTCACACCAGATGTCTGAACTA 60.057 47.826 11.47 0.00 46.59 2.24
2897 2978 3.181451 ACCACAGATTCAGCAGACAAGAA 60.181 43.478 0.00 0.00 0.00 2.52
2904 2985 4.472691 TTCAGCAGACAAGAAACATTCG 57.527 40.909 0.00 0.00 34.02 3.34
3007 3091 9.939802 ATTTAAACTTCCCAGTGTAGTTACTAG 57.060 33.333 0.00 0.00 32.17 2.57
3008 3092 6.990908 AAACTTCCCAGTGTAGTTACTAGT 57.009 37.500 0.00 0.00 32.17 2.57
3095 3183 7.867403 TCAAAACTAAACAGCAAGGATGAATTC 59.133 33.333 0.00 0.00 0.00 2.17
3134 3222 2.803030 ATGATGCTTTGCAGAGGACT 57.197 45.000 6.36 0.00 43.65 3.85
3164 3252 4.801330 TTCGAGGGTGCATGTATATAGG 57.199 45.455 0.00 0.00 0.00 2.57
3352 3440 4.256462 GGAGTACTCCCTCCGTCC 57.744 66.667 28.87 4.17 43.94 4.79
3353 3441 1.305623 GGAGTACTCCCTCCGTCCA 59.694 63.158 28.87 0.00 43.94 4.02
3354 3442 0.752376 GGAGTACTCCCTCCGTCCAG 60.752 65.000 28.87 0.00 43.94 3.86
3355 3443 0.255318 GAGTACTCCCTCCGTCCAGA 59.745 60.000 12.13 0.00 0.00 3.86
3356 3444 0.927767 AGTACTCCCTCCGTCCAGAT 59.072 55.000 0.00 0.00 0.00 2.90
3357 3445 2.106166 GAGTACTCCCTCCGTCCAGATA 59.894 54.545 12.13 0.00 0.00 1.98
3358 3446 2.717515 AGTACTCCCTCCGTCCAGATAT 59.282 50.000 0.00 0.00 0.00 1.63
3359 3447 3.915073 AGTACTCCCTCCGTCCAGATATA 59.085 47.826 0.00 0.00 0.00 0.86
3360 3448 3.157750 ACTCCCTCCGTCCAGATATAC 57.842 52.381 0.00 0.00 0.00 1.47
3361 3449 2.717515 ACTCCCTCCGTCCAGATATACT 59.282 50.000 0.00 0.00 0.00 2.12
3362 3450 3.140519 ACTCCCTCCGTCCAGATATACTT 59.859 47.826 0.00 0.00 0.00 2.24
3363 3451 3.497332 TCCCTCCGTCCAGATATACTTG 58.503 50.000 0.00 0.00 0.00 3.16
3364 3452 3.117246 TCCCTCCGTCCAGATATACTTGT 60.117 47.826 0.00 0.00 0.00 3.16
3365 3453 3.256136 CCCTCCGTCCAGATATACTTGTC 59.744 52.174 0.00 0.00 0.00 3.18
3366 3454 3.889538 CCTCCGTCCAGATATACTTGTCA 59.110 47.826 0.00 0.00 0.00 3.58
3367 3455 4.524714 CCTCCGTCCAGATATACTTGTCAT 59.475 45.833 0.00 0.00 0.00 3.06
3368 3456 5.336055 CCTCCGTCCAGATATACTTGTCATC 60.336 48.000 0.00 0.00 0.00 2.92
3369 3457 5.137551 TCCGTCCAGATATACTTGTCATCA 58.862 41.667 0.00 0.00 0.00 3.07
3370 3458 5.596772 TCCGTCCAGATATACTTGTCATCAA 59.403 40.000 0.00 0.00 0.00 2.57
3371 3459 6.097696 TCCGTCCAGATATACTTGTCATCAAA 59.902 38.462 0.00 0.00 32.87 2.69
3372 3460 6.201044 CCGTCCAGATATACTTGTCATCAAAC 59.799 42.308 0.00 0.00 32.87 2.93
3373 3461 6.980978 CGTCCAGATATACTTGTCATCAAACT 59.019 38.462 0.00 0.00 32.87 2.66
3374 3462 8.135529 CGTCCAGATATACTTGTCATCAAACTA 58.864 37.037 0.00 0.00 32.87 2.24
3375 3463 9.469807 GTCCAGATATACTTGTCATCAAACTAG 57.530 37.037 0.00 0.00 32.87 2.57
3376 3464 9.421399 TCCAGATATACTTGTCATCAAACTAGA 57.579 33.333 0.00 0.00 32.87 2.43
3385 3473 9.442047 ACTTGTCATCAAACTAGATAAAAGAGG 57.558 33.333 0.00 0.00 32.87 3.69
3386 3474 9.658799 CTTGTCATCAAACTAGATAAAAGAGGA 57.341 33.333 0.00 0.00 32.87 3.71
3452 3540 8.915871 ATCCATTTTGATGACAAGTATTTTCG 57.084 30.769 0.00 0.00 37.32 3.46
3453 3541 7.312154 TCCATTTTGATGACAAGTATTTTCGG 58.688 34.615 0.00 0.00 37.32 4.30
3454 3542 7.175816 TCCATTTTGATGACAAGTATTTTCGGA 59.824 33.333 0.00 0.00 37.32 4.55
3455 3543 7.273381 CCATTTTGATGACAAGTATTTTCGGAC 59.727 37.037 0.00 0.00 37.32 4.79
3456 3544 5.524511 TTGATGACAAGTATTTTCGGACG 57.475 39.130 0.00 0.00 0.00 4.79
3457 3545 3.930229 TGATGACAAGTATTTTCGGACGG 59.070 43.478 0.00 0.00 0.00 4.79
3458 3546 3.663995 TGACAAGTATTTTCGGACGGA 57.336 42.857 0.00 0.00 0.00 4.69
3459 3547 3.581755 TGACAAGTATTTTCGGACGGAG 58.418 45.455 0.00 0.00 0.00 4.63
3460 3548 2.928116 GACAAGTATTTTCGGACGGAGG 59.072 50.000 0.00 0.00 0.00 4.30
3461 3549 2.277084 CAAGTATTTTCGGACGGAGGG 58.723 52.381 0.00 0.00 0.00 4.30
3462 3550 1.856629 AGTATTTTCGGACGGAGGGA 58.143 50.000 0.00 0.00 0.00 4.20
3463 3551 1.755380 AGTATTTTCGGACGGAGGGAG 59.245 52.381 0.00 0.00 0.00 4.30
3464 3552 1.479730 GTATTTTCGGACGGAGGGAGT 59.520 52.381 0.00 0.00 0.00 3.85
3465 3553 1.856629 ATTTTCGGACGGAGGGAGTA 58.143 50.000 0.00 0.00 0.00 2.59
3466 3554 1.180029 TTTTCGGACGGAGGGAGTAG 58.820 55.000 0.00 0.00 0.00 2.57
3467 3555 0.038744 TTTCGGACGGAGGGAGTAGT 59.961 55.000 0.00 0.00 0.00 2.73
3468 3556 0.038744 TTCGGACGGAGGGAGTAGTT 59.961 55.000 0.00 0.00 0.00 2.24
3469 3557 0.038744 TCGGACGGAGGGAGTAGTTT 59.961 55.000 0.00 0.00 0.00 2.66
3470 3558 0.172803 CGGACGGAGGGAGTAGTTTG 59.827 60.000 0.00 0.00 0.00 2.93
3471 3559 1.264295 GGACGGAGGGAGTAGTTTGT 58.736 55.000 0.00 0.00 0.00 2.83
3472 3560 2.450476 GGACGGAGGGAGTAGTTTGTA 58.550 52.381 0.00 0.00 0.00 2.41
3473 3561 2.827921 GGACGGAGGGAGTAGTTTGTAA 59.172 50.000 0.00 0.00 0.00 2.41
3503 3596 9.984590 AAATATGTGGTTAATAAGGTACCAAGT 57.015 29.630 15.94 3.42 43.13 3.16
3525 3618 8.612619 CAAGTTGTAAAACACTACATCTCAACT 58.387 33.333 0.00 0.00 42.64 3.16
3526 3619 8.366671 AGTTGTAAAACACTACATCTCAACTC 57.633 34.615 0.00 0.00 38.61 3.01
3570 3663 7.549134 TGCTTCATCCAGTTACATAACACTTAG 59.451 37.037 4.67 0.00 38.62 2.18
3650 3743 9.899226 TTCAGTATGTCAAGTTATATCGATCAG 57.101 33.333 0.00 0.00 37.40 2.90
3651 3744 8.515414 TCAGTATGTCAAGTTATATCGATCAGG 58.485 37.037 0.00 0.00 37.40 3.86
3652 3745 7.757173 CAGTATGTCAAGTTATATCGATCAGGG 59.243 40.741 0.00 0.00 0.00 4.45
3653 3746 6.672266 ATGTCAAGTTATATCGATCAGGGT 57.328 37.500 0.00 0.00 0.00 4.34
3654 3747 5.842907 TGTCAAGTTATATCGATCAGGGTG 58.157 41.667 0.00 0.00 0.00 4.61
3655 3748 5.221441 TGTCAAGTTATATCGATCAGGGTGG 60.221 44.000 0.00 0.00 0.00 4.61
3656 3749 4.283467 TCAAGTTATATCGATCAGGGTGGG 59.717 45.833 0.00 0.00 0.00 4.61
3657 3750 2.567615 AGTTATATCGATCAGGGTGGGC 59.432 50.000 0.00 0.00 0.00 5.36
3658 3751 2.567615 GTTATATCGATCAGGGTGGGCT 59.432 50.000 0.00 0.00 0.00 5.19
3659 3752 1.734655 ATATCGATCAGGGTGGGCTT 58.265 50.000 0.00 0.00 0.00 4.35
3660 3753 1.507140 TATCGATCAGGGTGGGCTTT 58.493 50.000 0.00 0.00 0.00 3.51
3661 3754 0.107017 ATCGATCAGGGTGGGCTTTG 60.107 55.000 0.00 0.00 0.00 2.77
3662 3755 2.409870 CGATCAGGGTGGGCTTTGC 61.410 63.158 0.00 0.00 0.00 3.68
3672 3765 3.537388 GGCTTTGCCCTGTGTGTT 58.463 55.556 0.00 0.00 44.06 3.32
3673 3766 1.822615 GGCTTTGCCCTGTGTGTTT 59.177 52.632 0.00 0.00 44.06 2.83
3674 3767 0.530431 GGCTTTGCCCTGTGTGTTTG 60.530 55.000 0.00 0.00 44.06 2.93
3675 3768 0.175531 GCTTTGCCCTGTGTGTTTGT 59.824 50.000 0.00 0.00 0.00 2.83
3676 3769 1.925229 CTTTGCCCTGTGTGTTTGTG 58.075 50.000 0.00 0.00 0.00 3.33
3677 3770 1.204467 CTTTGCCCTGTGTGTTTGTGT 59.796 47.619 0.00 0.00 0.00 3.72
3678 3771 0.814457 TTGCCCTGTGTGTTTGTGTC 59.186 50.000 0.00 0.00 0.00 3.67
3679 3772 0.034574 TGCCCTGTGTGTTTGTGTCT 60.035 50.000 0.00 0.00 0.00 3.41
3680 3773 1.210722 TGCCCTGTGTGTTTGTGTCTA 59.789 47.619 0.00 0.00 0.00 2.59
3681 3774 2.158682 TGCCCTGTGTGTTTGTGTCTAT 60.159 45.455 0.00 0.00 0.00 1.98
3682 3775 2.226437 GCCCTGTGTGTTTGTGTCTATG 59.774 50.000 0.00 0.00 0.00 2.23
3683 3776 2.813754 CCCTGTGTGTTTGTGTCTATGG 59.186 50.000 0.00 0.00 0.00 2.74
3684 3777 2.813754 CCTGTGTGTTTGTGTCTATGGG 59.186 50.000 0.00 0.00 0.00 4.00
3685 3778 3.495983 CCTGTGTGTTTGTGTCTATGGGA 60.496 47.826 0.00 0.00 0.00 4.37
3686 3779 3.738982 TGTGTGTTTGTGTCTATGGGAG 58.261 45.455 0.00 0.00 0.00 4.30
3687 3780 3.135712 TGTGTGTTTGTGTCTATGGGAGT 59.864 43.478 0.00 0.00 0.00 3.85
3688 3781 3.498397 GTGTGTTTGTGTCTATGGGAGTG 59.502 47.826 0.00 0.00 0.00 3.51
3689 3782 3.074412 GTGTTTGTGTCTATGGGAGTGG 58.926 50.000 0.00 0.00 0.00 4.00
3690 3783 2.039746 TGTTTGTGTCTATGGGAGTGGG 59.960 50.000 0.00 0.00 0.00 4.61
3691 3784 0.618458 TTGTGTCTATGGGAGTGGGC 59.382 55.000 0.00 0.00 0.00 5.36
3692 3785 0.252696 TGTGTCTATGGGAGTGGGCT 60.253 55.000 0.00 0.00 0.00 5.19
3693 3786 0.912486 GTGTCTATGGGAGTGGGCTT 59.088 55.000 0.00 0.00 0.00 4.35
3694 3787 0.911769 TGTCTATGGGAGTGGGCTTG 59.088 55.000 0.00 0.00 0.00 4.01
3695 3788 0.181350 GTCTATGGGAGTGGGCTTGG 59.819 60.000 0.00 0.00 0.00 3.61
3696 3789 1.152881 CTATGGGAGTGGGCTTGGC 60.153 63.158 0.00 0.00 0.00 4.52
3706 3799 3.549730 GGCTTGGCCCTTGTTGTT 58.450 55.556 0.00 0.00 44.06 2.83
3707 3800 1.367471 GGCTTGGCCCTTGTTGTTC 59.633 57.895 0.00 0.00 44.06 3.18
3708 3801 1.367471 GCTTGGCCCTTGTTGTTCC 59.633 57.895 0.00 0.00 0.00 3.62
3709 3802 1.659794 CTTGGCCCTTGTTGTTCCG 59.340 57.895 0.00 0.00 0.00 4.30
3710 3803 1.805428 CTTGGCCCTTGTTGTTCCGG 61.805 60.000 0.00 0.00 0.00 5.14
3711 3804 2.203437 GGCCCTTGTTGTTCCGGT 60.203 61.111 0.00 0.00 0.00 5.28
3712 3805 1.830847 GGCCCTTGTTGTTCCGGTT 60.831 57.895 0.00 0.00 0.00 4.44
3713 3806 1.396607 GGCCCTTGTTGTTCCGGTTT 61.397 55.000 0.00 0.00 0.00 3.27
3714 3807 0.462375 GCCCTTGTTGTTCCGGTTTT 59.538 50.000 0.00 0.00 0.00 2.43
3715 3808 1.134640 GCCCTTGTTGTTCCGGTTTTT 60.135 47.619 0.00 0.00 0.00 1.94
3716 3809 2.545731 CCCTTGTTGTTCCGGTTTTTG 58.454 47.619 0.00 0.00 0.00 2.44
3717 3810 1.930503 CCTTGTTGTTCCGGTTTTTGC 59.069 47.619 0.00 0.00 0.00 3.68
3718 3811 1.930503 CTTGTTGTTCCGGTTTTTGCC 59.069 47.619 0.00 0.00 0.00 4.52
3719 3812 0.175989 TGTTGTTCCGGTTTTTGCCC 59.824 50.000 0.00 0.00 0.00 5.36
3720 3813 0.872451 GTTGTTCCGGTTTTTGCCCG 60.872 55.000 0.00 0.00 45.07 6.13
3725 3818 4.838046 CGGTTTTTGCCCGGTTTT 57.162 50.000 0.00 0.00 41.78 2.43
3726 3819 2.595707 CGGTTTTTGCCCGGTTTTC 58.404 52.632 0.00 0.00 41.78 2.29
3727 3820 0.876777 CGGTTTTTGCCCGGTTTTCC 60.877 55.000 0.00 0.00 41.78 3.13
3741 3834 4.100707 GGTTTTCCGTAATTAACTGGGC 57.899 45.455 0.00 0.00 0.00 5.36
3742 3835 3.506844 GGTTTTCCGTAATTAACTGGGCA 59.493 43.478 0.00 0.00 0.00 5.36
3743 3836 4.022155 GGTTTTCCGTAATTAACTGGGCAA 60.022 41.667 0.00 0.00 0.00 4.52
3744 3837 5.336929 GGTTTTCCGTAATTAACTGGGCAAT 60.337 40.000 0.00 0.00 0.00 3.56
3745 3838 5.986501 TTTCCGTAATTAACTGGGCAATT 57.013 34.783 0.00 0.00 0.00 2.32
3746 3839 5.570234 TTCCGTAATTAACTGGGCAATTC 57.430 39.130 0.00 0.00 0.00 2.17
3747 3840 4.850680 TCCGTAATTAACTGGGCAATTCT 58.149 39.130 0.00 0.00 0.00 2.40
3748 3841 4.879545 TCCGTAATTAACTGGGCAATTCTC 59.120 41.667 0.00 0.00 0.00 2.87
3749 3842 4.881850 CCGTAATTAACTGGGCAATTCTCT 59.118 41.667 0.00 0.00 0.00 3.10
3750 3843 5.357032 CCGTAATTAACTGGGCAATTCTCTT 59.643 40.000 0.00 0.00 0.00 2.85
3751 3844 6.458342 CCGTAATTAACTGGGCAATTCTCTTC 60.458 42.308 0.00 0.00 0.00 2.87
3752 3845 6.316390 CGTAATTAACTGGGCAATTCTCTTCT 59.684 38.462 0.00 0.00 0.00 2.85
3753 3846 6.521151 AATTAACTGGGCAATTCTCTTCTG 57.479 37.500 0.00 0.00 0.00 3.02
3754 3847 1.831580 ACTGGGCAATTCTCTTCTGC 58.168 50.000 0.00 0.00 35.28 4.26
3755 3848 1.353694 ACTGGGCAATTCTCTTCTGCT 59.646 47.619 0.00 0.00 36.32 4.24
3756 3849 2.224967 ACTGGGCAATTCTCTTCTGCTT 60.225 45.455 0.00 0.00 36.32 3.91
3757 3850 3.009473 ACTGGGCAATTCTCTTCTGCTTA 59.991 43.478 0.00 0.00 36.32 3.09
3758 3851 4.012374 CTGGGCAATTCTCTTCTGCTTAA 58.988 43.478 0.00 0.00 36.32 1.85
3759 3852 4.603131 TGGGCAATTCTCTTCTGCTTAAT 58.397 39.130 0.00 0.00 36.32 1.40
3760 3853 5.018809 TGGGCAATTCTCTTCTGCTTAATT 58.981 37.500 0.00 0.00 36.32 1.40
3761 3854 6.186957 TGGGCAATTCTCTTCTGCTTAATTA 58.813 36.000 0.00 0.00 36.32 1.40
3762 3855 6.663093 TGGGCAATTCTCTTCTGCTTAATTAA 59.337 34.615 0.00 0.00 36.32 1.40
3763 3856 7.342799 TGGGCAATTCTCTTCTGCTTAATTAAT 59.657 33.333 0.00 0.00 36.32 1.40
3764 3857 8.850156 GGGCAATTCTCTTCTGCTTAATTAATA 58.150 33.333 0.00 0.00 36.32 0.98
3765 3858 9.890352 GGCAATTCTCTTCTGCTTAATTAATAG 57.110 33.333 0.00 1.34 36.32 1.73
3772 3865 8.839310 TCTTCTGCTTAATTAATAGATGAGGC 57.161 34.615 16.19 8.49 0.00 4.70
3773 3866 8.432013 TCTTCTGCTTAATTAATAGATGAGGCA 58.568 33.333 16.19 11.39 0.00 4.75
3774 3867 8.978874 TTCTGCTTAATTAATAGATGAGGCAA 57.021 30.769 11.09 0.79 0.00 4.52
3775 3868 9.578576 TTCTGCTTAATTAATAGATGAGGCAAT 57.421 29.630 11.09 0.00 0.00 3.56
3776 3869 9.224267 TCTGCTTAATTAATAGATGAGGCAATC 57.776 33.333 0.00 0.00 0.00 2.67
3777 3870 9.228949 CTGCTTAATTAATAGATGAGGCAATCT 57.771 33.333 0.00 7.70 40.12 2.40
3778 3871 9.578576 TGCTTAATTAATAGATGAGGCAATCTT 57.421 29.630 7.86 0.00 37.98 2.40
3791 3884 2.247311 CAATCTTTGCCTCCGTTTCG 57.753 50.000 0.00 0.00 0.00 3.46
3792 3885 1.804151 CAATCTTTGCCTCCGTTTCGA 59.196 47.619 0.00 0.00 0.00 3.71
3793 3886 2.178912 ATCTTTGCCTCCGTTTCGAA 57.821 45.000 0.00 0.00 0.00 3.71
3794 3887 1.956297 TCTTTGCCTCCGTTTCGAAA 58.044 45.000 6.47 6.47 0.00 3.46
3795 3888 2.290464 TCTTTGCCTCCGTTTCGAAAA 58.710 42.857 13.10 0.00 0.00 2.29
3796 3889 2.289547 TCTTTGCCTCCGTTTCGAAAAG 59.710 45.455 13.10 14.60 0.00 2.27
3797 3890 1.956297 TTGCCTCCGTTTCGAAAAGA 58.044 45.000 22.90 16.30 0.00 2.52
3798 3891 1.956297 TGCCTCCGTTTCGAAAAGAA 58.044 45.000 22.90 3.90 37.01 2.52
3799 3892 2.290464 TGCCTCCGTTTCGAAAAGAAA 58.710 42.857 22.90 10.97 45.76 2.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
155 167 1.290134 GGAAGGGATGGTCCTGAACT 58.710 55.000 0.00 0.00 37.20 3.01
252 271 4.941325 TCGATCGAGCAGTATATGGTAC 57.059 45.455 15.15 0.00 40.53 3.34
253 272 4.941873 ACATCGATCGAGCAGTATATGGTA 59.058 41.667 23.84 0.00 40.53 3.25
254 273 3.759086 ACATCGATCGAGCAGTATATGGT 59.241 43.478 23.84 0.00 44.02 3.55
255 274 4.101235 CACATCGATCGAGCAGTATATGG 58.899 47.826 23.84 6.09 0.00 2.74
260 297 3.775661 TTTCACATCGATCGAGCAGTA 57.224 42.857 23.84 5.97 0.00 2.74
268 305 9.411801 TCATTAGCTATAGTTTTCACATCGATC 57.588 33.333 0.00 0.00 0.00 3.69
290 327 4.258702 ACGTCTCACTAAACTGCTCATT 57.741 40.909 0.00 0.00 0.00 2.57
335 372 6.403049 ACAATTGATCCAACATCAGTACGTA 58.597 36.000 13.59 0.00 0.00 3.57
339 376 6.942005 ACTGAACAATTGATCCAACATCAGTA 59.058 34.615 13.59 0.00 32.68 2.74
340 377 5.771666 ACTGAACAATTGATCCAACATCAGT 59.228 36.000 13.59 13.49 0.00 3.41
375 412 3.673746 TGTCTCTTTCTGTTTGCAACG 57.326 42.857 0.00 0.00 0.00 4.10
412 449 8.634444 CAGCTATAAGTAATAAGGTCACACTCT 58.366 37.037 0.00 0.00 0.00 3.24
417 454 9.595823 TTTCACAGCTATAAGTAATAAGGTCAC 57.404 33.333 0.00 0.00 0.00 3.67
450 487 2.123428 GCATGTCCCACTGCCCATC 61.123 63.158 0.00 0.00 32.15 3.51
464 501 2.787473 TCTAACAGGGTTGGAGCATG 57.213 50.000 0.00 0.00 33.17 4.06
468 505 2.369394 GGCAATCTAACAGGGTTGGAG 58.631 52.381 1.83 0.00 0.00 3.86
475 512 2.180204 CGGCCGGCAATCTAACAGG 61.180 63.158 30.85 0.00 0.00 4.00
507 548 3.009143 GCTCAAGAGGAGGGAGGTTTTTA 59.991 47.826 0.00 0.00 44.22 1.52
546 587 2.035425 GCAACGCGTATTAGGACGTAAC 60.035 50.000 14.46 0.00 44.74 2.50
547 588 2.159393 AGCAACGCGTATTAGGACGTAA 60.159 45.455 14.46 0.00 44.74 3.18
553 594 2.408704 GCTATGAGCAACGCGTATTAGG 59.591 50.000 14.46 0.83 41.89 2.69
629 670 2.592287 TTTTGGTCGGACGCCACC 60.592 61.111 1.43 2.14 35.46 4.61
630 671 2.181521 TGTTTTGGTCGGACGCCAC 61.182 57.895 1.43 0.00 35.46 5.01
631 672 2.181521 GTGTTTTGGTCGGACGCCA 61.182 57.895 1.43 4.24 0.00 5.69
632 673 1.716826 TTGTGTTTTGGTCGGACGCC 61.717 55.000 1.43 0.00 0.00 5.68
761 802 8.589338 AGGCTTGAAATATATAGACGTGAGATT 58.411 33.333 0.00 0.00 0.00 2.40
763 804 7.448777 AGAGGCTTGAAATATATAGACGTGAGA 59.551 37.037 0.00 0.00 0.00 3.27
764 805 7.598278 AGAGGCTTGAAATATATAGACGTGAG 58.402 38.462 0.00 0.00 0.00 3.51
765 806 7.448777 AGAGAGGCTTGAAATATATAGACGTGA 59.551 37.037 0.00 0.00 0.00 4.35
810 852 3.634448 TGAGAGCAAAGCTAGCTAGGTAG 59.366 47.826 24.93 22.09 43.58 3.18
811 853 3.632333 TGAGAGCAAAGCTAGCTAGGTA 58.368 45.455 24.93 4.82 43.58 3.08
812 854 2.430332 CTGAGAGCAAAGCTAGCTAGGT 59.570 50.000 19.70 19.65 43.58 3.08
880 922 1.534729 TCACTCGCAGTGCTCTCTAA 58.465 50.000 14.33 0.00 45.54 2.10
921 963 6.058833 CACTCTCTATCTGTGTTCCTAGCTA 58.941 44.000 0.00 0.00 0.00 3.32
929 971 4.769488 TCTTGAGCACTCTCTATCTGTGTT 59.231 41.667 0.00 0.00 40.03 3.32
945 997 0.864455 GTGTGACAGTGCTCTTGAGC 59.136 55.000 15.01 15.01 0.00 4.26
953 1005 0.861450 GCGTGTTTGTGTGACAGTGC 60.861 55.000 0.00 0.00 0.00 4.40
956 1008 0.445829 TGTGCGTGTTTGTGTGACAG 59.554 50.000 0.00 0.00 0.00 3.51
980 1032 0.863538 CTGGTTCAGCGTCGATCTCG 60.864 60.000 0.00 0.00 41.45 4.04
1176 1228 3.790437 ACGGCCTGCTGGATGGAG 61.790 66.667 14.77 1.61 34.57 3.86
1283 1335 5.431765 GAAGAATGATGAGAAAGCCAGGTA 58.568 41.667 0.00 0.00 0.00 3.08
1288 1340 3.686726 ACACGAAGAATGATGAGAAAGCC 59.313 43.478 0.00 0.00 0.00 4.35
1329 1381 5.888982 ACCAGTCTAGTTTCAGGAAGAAA 57.111 39.130 0.00 0.00 43.71 2.52
1332 1384 6.092807 GCATAAACCAGTCTAGTTTCAGGAAG 59.907 42.308 0.00 0.00 38.37 3.46
1333 1385 5.938125 GCATAAACCAGTCTAGTTTCAGGAA 59.062 40.000 0.00 0.00 38.37 3.36
1334 1386 5.012664 TGCATAAACCAGTCTAGTTTCAGGA 59.987 40.000 0.00 0.00 38.37 3.86
1335 1387 5.245531 TGCATAAACCAGTCTAGTTTCAGG 58.754 41.667 0.00 0.00 38.37 3.86
1336 1388 6.676456 GCATGCATAAACCAGTCTAGTTTCAG 60.676 42.308 14.21 0.00 38.37 3.02
1337 1389 5.123820 GCATGCATAAACCAGTCTAGTTTCA 59.876 40.000 14.21 0.00 38.37 2.69
1338 1390 5.123820 TGCATGCATAAACCAGTCTAGTTTC 59.876 40.000 18.46 0.00 38.37 2.78
1339 1391 5.009631 TGCATGCATAAACCAGTCTAGTTT 58.990 37.500 18.46 1.97 40.43 2.66
1341 1393 4.220693 TGCATGCATAAACCAGTCTAGT 57.779 40.909 18.46 0.00 0.00 2.57
1508 1560 4.268359 AGTTAGAGAGAACGGTTACGGAT 58.732 43.478 0.00 0.00 46.48 4.18
1567 1619 1.001633 GTACGTTCATGGACCACTGGT 59.998 52.381 0.00 0.00 39.44 4.00
1735 1801 1.000731 TGCGAGATGTGTGATGTGTGA 59.999 47.619 0.00 0.00 0.00 3.58
1737 1803 2.168326 TTGCGAGATGTGTGATGTGT 57.832 45.000 0.00 0.00 0.00 3.72
1738 1804 2.722706 CGTTTGCGAGATGTGTGATGTG 60.723 50.000 0.00 0.00 41.33 3.21
1739 1805 1.460743 CGTTTGCGAGATGTGTGATGT 59.539 47.619 0.00 0.00 41.33 3.06
1740 1806 1.787989 GCGTTTGCGAGATGTGTGATG 60.788 52.381 0.00 0.00 41.33 3.07
1741 1807 0.443869 GCGTTTGCGAGATGTGTGAT 59.556 50.000 0.00 0.00 41.33 3.06
1742 1808 1.859398 GCGTTTGCGAGATGTGTGA 59.141 52.632 0.00 0.00 41.33 3.58
1765 1831 1.066303 GAGGGATACACAGAGACAGCG 59.934 57.143 0.00 0.00 39.74 5.18
1800 1868 8.525876 CATGCATGTACTACGAATTTCAAAATG 58.474 33.333 18.91 0.00 0.00 2.32
1858 1930 1.406887 CGAACCCGGGTGATTTCTGAT 60.407 52.381 31.05 7.88 0.00 2.90
1859 1931 0.036765 CGAACCCGGGTGATTTCTGA 60.037 55.000 31.05 0.00 0.00 3.27
1860 1932 0.321298 ACGAACCCGGGTGATTTCTG 60.321 55.000 31.05 18.21 40.78 3.02
1861 1933 0.036671 GACGAACCCGGGTGATTTCT 60.037 55.000 31.05 10.73 40.78 2.52
1862 1934 0.036671 AGACGAACCCGGGTGATTTC 60.037 55.000 31.05 20.35 40.78 2.17
1863 1935 0.321298 CAGACGAACCCGGGTGATTT 60.321 55.000 31.05 12.19 40.78 2.17
1864 1936 1.295423 CAGACGAACCCGGGTGATT 59.705 57.895 31.05 12.67 40.78 2.57
1934 2007 4.767255 GAGCAGGGTGGCCTCGTG 62.767 72.222 3.32 9.54 0.00 4.35
1945 2018 1.154131 CTCACGAGTCACGAGCAGG 60.154 63.158 0.00 0.00 45.77 4.85
1972 2045 0.107410 TCAGTCAAGTTGCGGGTGTT 60.107 50.000 0.00 0.00 0.00 3.32
1974 2047 1.831389 CGTCAGTCAAGTTGCGGGTG 61.831 60.000 0.00 0.00 0.00 4.61
1975 2048 1.594293 CGTCAGTCAAGTTGCGGGT 60.594 57.895 0.00 0.00 0.00 5.28
1976 2049 1.157870 AACGTCAGTCAAGTTGCGGG 61.158 55.000 0.00 0.00 0.00 6.13
1977 2050 0.042188 CAACGTCAGTCAAGTTGCGG 60.042 55.000 0.00 0.00 38.73 5.69
1978 2051 0.042188 CCAACGTCAGTCAAGTTGCG 60.042 55.000 0.00 0.00 42.60 4.85
1981 2054 2.413310 AACCCAACGTCAGTCAAGTT 57.587 45.000 0.00 0.00 0.00 2.66
1997 2070 2.375146 AGTGAAACCACACAGGAAACC 58.625 47.619 0.00 0.00 42.45 3.27
2003 2076 3.689161 TCTGTCAAAGTGAAACCACACAG 59.311 43.478 0.00 0.00 42.45 3.66
2004 2077 3.680490 TCTGTCAAAGTGAAACCACACA 58.320 40.909 0.00 0.00 42.45 3.72
2005 2078 4.083003 TGTTCTGTCAAAGTGAAACCACAC 60.083 41.667 0.00 0.00 37.80 3.82
2006 2079 4.075682 TGTTCTGTCAAAGTGAAACCACA 58.924 39.130 0.00 0.00 37.80 4.17
2007 2080 4.412207 GTGTTCTGTCAAAGTGAAACCAC 58.588 43.478 0.00 0.00 37.80 4.16
2008 2081 3.126171 CGTGTTCTGTCAAAGTGAAACCA 59.874 43.478 0.00 0.00 37.80 3.67
2009 2082 3.486875 CCGTGTTCTGTCAAAGTGAAACC 60.487 47.826 0.00 0.00 37.80 3.27
2010 2083 3.680789 CCGTGTTCTGTCAAAGTGAAAC 58.319 45.455 0.00 0.00 0.00 2.78
2012 2085 1.668751 GCCGTGTTCTGTCAAAGTGAA 59.331 47.619 0.00 0.00 0.00 3.18
2013 2086 1.134521 AGCCGTGTTCTGTCAAAGTGA 60.135 47.619 0.00 0.00 0.00 3.41
2014 2087 1.261619 GAGCCGTGTTCTGTCAAAGTG 59.738 52.381 0.00 0.00 0.00 3.16
2015 2088 1.583054 GAGCCGTGTTCTGTCAAAGT 58.417 50.000 0.00 0.00 0.00 2.66
2016 2089 0.868406 GGAGCCGTGTTCTGTCAAAG 59.132 55.000 0.00 0.00 0.00 2.77
2017 2090 0.179234 TGGAGCCGTGTTCTGTCAAA 59.821 50.000 0.00 0.00 0.00 2.69
2048 2121 3.267233 TGACCCCCTTGCATGCCT 61.267 61.111 16.68 0.00 0.00 4.75
2256 2331 3.279116 CGGTGGGCGGCATATGTG 61.279 66.667 12.47 0.00 0.00 3.21
2257 2332 3.792736 ACGGTGGGCGGCATATGT 61.793 61.111 12.47 0.18 0.00 2.29
2258 2333 3.279116 CACGGTGGGCGGCATATG 61.279 66.667 12.47 0.00 0.00 1.78
2273 2349 4.963276 ATGTAATGTATGTGTGTGCCAC 57.037 40.909 0.00 0.00 44.78 5.01
2311 2387 7.649705 GCATGAGCTAAGCACGTATACATATAT 59.350 37.037 3.32 0.00 37.91 0.86
2314 2390 5.161358 GCATGAGCTAAGCACGTATACATA 58.839 41.667 3.32 0.00 37.91 2.29
2315 2391 3.990469 GCATGAGCTAAGCACGTATACAT 59.010 43.478 3.32 0.00 37.91 2.29
2607 2685 5.752650 TGTATGCAGTAGAGTACTAGTGGT 58.247 41.667 5.39 0.00 45.20 4.16
2608 2686 6.885952 ATGTATGCAGTAGAGTACTAGTGG 57.114 41.667 5.39 0.00 45.20 4.00
2614 2692 8.568794 TGTCTGAATATGTATGCAGTAGAGTAC 58.431 37.037 7.68 0.00 39.81 2.73
2806 2884 0.442699 CGTTAACGAAGCTCTTGCCC 59.557 55.000 23.35 0.00 43.02 5.36
2821 2899 1.066430 GTGAGCCAGTGGAATCCGTTA 60.066 52.381 15.20 0.00 0.00 3.18
2858 2936 0.179018 GGTGCTGGAAACTGTCTGGT 60.179 55.000 0.00 0.00 0.00 4.00
2897 2978 7.039270 TGCTTGTGATGTATAGTACGAATGTT 58.961 34.615 0.00 0.00 0.00 2.71
2904 2985 9.186323 CTCTTGTATGCTTGTGATGTATAGTAC 57.814 37.037 0.00 0.00 0.00 2.73
3007 3091 5.642063 TGTGCCTGTGCTTTCTAATACTAAC 59.358 40.000 0.00 0.00 38.71 2.34
3008 3092 5.800296 TGTGCCTGTGCTTTCTAATACTAA 58.200 37.500 0.00 0.00 38.71 2.24
3016 3101 1.150081 AGCTGTGCCTGTGCTTTCT 59.850 52.632 0.00 0.00 38.71 2.52
3095 3183 6.068473 TCATATATAGGCAGGCGTATAACG 57.932 41.667 15.18 8.63 45.88 3.18
3164 3252 1.417592 CACATGAAGCAGCGTCGAC 59.582 57.895 5.18 5.18 0.00 4.20
3341 3429 3.443145 AGTATATCTGGACGGAGGGAG 57.557 52.381 0.00 0.00 0.00 4.30
3343 3431 3.231818 ACAAGTATATCTGGACGGAGGG 58.768 50.000 0.00 0.00 0.00 4.30
3344 3432 3.889538 TGACAAGTATATCTGGACGGAGG 59.110 47.826 0.00 0.00 0.00 4.30
3345 3433 5.241728 TGATGACAAGTATATCTGGACGGAG 59.758 44.000 0.00 0.00 0.00 4.63
3347 3435 5.453567 TGATGACAAGTATATCTGGACGG 57.546 43.478 0.00 0.00 0.00 4.79
3348 3436 6.980978 AGTTTGATGACAAGTATATCTGGACG 59.019 38.462 0.00 0.00 37.32 4.79
3349 3437 9.469807 CTAGTTTGATGACAAGTATATCTGGAC 57.530 37.037 0.00 0.00 37.32 4.02
3350 3438 9.421399 TCTAGTTTGATGACAAGTATATCTGGA 57.579 33.333 0.00 0.00 37.32 3.86
3359 3447 9.442047 CCTCTTTTATCTAGTTTGATGACAAGT 57.558 33.333 0.00 0.00 37.32 3.16
3360 3448 9.658799 TCCTCTTTTATCTAGTTTGATGACAAG 57.341 33.333 0.00 0.00 37.32 3.16
3427 3515 7.975616 CCGAAAATACTTGTCATCAAAATGGAT 59.024 33.333 0.00 0.00 33.42 3.41
3428 3516 7.175816 TCCGAAAATACTTGTCATCAAAATGGA 59.824 33.333 0.00 0.00 33.42 3.41
3429 3517 7.273381 GTCCGAAAATACTTGTCATCAAAATGG 59.727 37.037 0.00 0.00 33.42 3.16
3430 3518 7.007367 CGTCCGAAAATACTTGTCATCAAAATG 59.993 37.037 0.00 0.00 32.87 2.32
3431 3519 7.021196 CGTCCGAAAATACTTGTCATCAAAAT 58.979 34.615 0.00 0.00 32.87 1.82
3432 3520 6.367421 CGTCCGAAAATACTTGTCATCAAAA 58.633 36.000 0.00 0.00 32.87 2.44
3433 3521 5.106869 CCGTCCGAAAATACTTGTCATCAAA 60.107 40.000 0.00 0.00 32.87 2.69
3434 3522 4.390603 CCGTCCGAAAATACTTGTCATCAA 59.609 41.667 0.00 0.00 0.00 2.57
3435 3523 3.930229 CCGTCCGAAAATACTTGTCATCA 59.070 43.478 0.00 0.00 0.00 3.07
3436 3524 4.178540 TCCGTCCGAAAATACTTGTCATC 58.821 43.478 0.00 0.00 0.00 2.92
3437 3525 4.181578 CTCCGTCCGAAAATACTTGTCAT 58.818 43.478 0.00 0.00 0.00 3.06
3438 3526 3.581755 CTCCGTCCGAAAATACTTGTCA 58.418 45.455 0.00 0.00 0.00 3.58
3439 3527 2.928116 CCTCCGTCCGAAAATACTTGTC 59.072 50.000 0.00 0.00 0.00 3.18
3440 3528 2.354403 CCCTCCGTCCGAAAATACTTGT 60.354 50.000 0.00 0.00 0.00 3.16
3441 3529 2.093869 TCCCTCCGTCCGAAAATACTTG 60.094 50.000 0.00 0.00 0.00 3.16
3442 3530 2.167900 CTCCCTCCGTCCGAAAATACTT 59.832 50.000 0.00 0.00 0.00 2.24
3443 3531 1.755380 CTCCCTCCGTCCGAAAATACT 59.245 52.381 0.00 0.00 0.00 2.12
3444 3532 1.479730 ACTCCCTCCGTCCGAAAATAC 59.520 52.381 0.00 0.00 0.00 1.89
3445 3533 1.856629 ACTCCCTCCGTCCGAAAATA 58.143 50.000 0.00 0.00 0.00 1.40
3446 3534 1.755380 CTACTCCCTCCGTCCGAAAAT 59.245 52.381 0.00 0.00 0.00 1.82
3447 3535 1.180029 CTACTCCCTCCGTCCGAAAA 58.820 55.000 0.00 0.00 0.00 2.29
3448 3536 0.038744 ACTACTCCCTCCGTCCGAAA 59.961 55.000 0.00 0.00 0.00 3.46
3449 3537 0.038744 AACTACTCCCTCCGTCCGAA 59.961 55.000 0.00 0.00 0.00 4.30
3450 3538 0.038744 AAACTACTCCCTCCGTCCGA 59.961 55.000 0.00 0.00 0.00 4.55
3451 3539 0.172803 CAAACTACTCCCTCCGTCCG 59.827 60.000 0.00 0.00 0.00 4.79
3452 3540 1.264295 ACAAACTACTCCCTCCGTCC 58.736 55.000 0.00 0.00 0.00 4.79
3453 3541 4.525912 TTTACAAACTACTCCCTCCGTC 57.474 45.455 0.00 0.00 0.00 4.79
3454 3542 4.961438 TTTTACAAACTACTCCCTCCGT 57.039 40.909 0.00 0.00 0.00 4.69
3503 3596 7.042051 GCTGAGTTGAGATGTAGTGTTTTACAA 60.042 37.037 0.00 0.00 37.13 2.41
3601 3694 0.026674 CACCGACATGCATGCTTACG 59.973 55.000 26.53 23.02 0.00 3.18
3644 3737 2.409870 GCAAAGCCCACCCTGATCG 61.410 63.158 0.00 0.00 0.00 3.69
3646 3739 2.037847 GGCAAAGCCCACCCTGAT 59.962 61.111 0.00 0.00 44.06 2.90
3656 3749 0.175531 ACAAACACACAGGGCAAAGC 59.824 50.000 0.00 0.00 0.00 3.51
3657 3750 1.204467 ACACAAACACACAGGGCAAAG 59.796 47.619 0.00 0.00 0.00 2.77
3658 3751 1.203523 GACACAAACACACAGGGCAAA 59.796 47.619 0.00 0.00 0.00 3.68
3659 3752 0.814457 GACACAAACACACAGGGCAA 59.186 50.000 0.00 0.00 0.00 4.52
3660 3753 0.034574 AGACACAAACACACAGGGCA 60.035 50.000 0.00 0.00 0.00 5.36
3661 3754 1.961793 TAGACACAAACACACAGGGC 58.038 50.000 0.00 0.00 0.00 5.19
3662 3755 2.813754 CCATAGACACAAACACACAGGG 59.186 50.000 0.00 0.00 0.00 4.45
3663 3756 2.813754 CCCATAGACACAAACACACAGG 59.186 50.000 0.00 0.00 0.00 4.00
3664 3757 3.738982 TCCCATAGACACAAACACACAG 58.261 45.455 0.00 0.00 0.00 3.66
3665 3758 3.135712 ACTCCCATAGACACAAACACACA 59.864 43.478 0.00 0.00 0.00 3.72
3666 3759 3.498397 CACTCCCATAGACACAAACACAC 59.502 47.826 0.00 0.00 0.00 3.82
3667 3760 3.495983 CCACTCCCATAGACACAAACACA 60.496 47.826 0.00 0.00 0.00 3.72
3668 3761 3.074412 CCACTCCCATAGACACAAACAC 58.926 50.000 0.00 0.00 0.00 3.32
3669 3762 2.039746 CCCACTCCCATAGACACAAACA 59.960 50.000 0.00 0.00 0.00 2.83
3670 3763 2.711542 CCCACTCCCATAGACACAAAC 58.288 52.381 0.00 0.00 0.00 2.93
3671 3764 1.004277 GCCCACTCCCATAGACACAAA 59.996 52.381 0.00 0.00 0.00 2.83
3672 3765 0.618458 GCCCACTCCCATAGACACAA 59.382 55.000 0.00 0.00 0.00 3.33
3673 3766 0.252696 AGCCCACTCCCATAGACACA 60.253 55.000 0.00 0.00 0.00 3.72
3674 3767 0.912486 AAGCCCACTCCCATAGACAC 59.088 55.000 0.00 0.00 0.00 3.67
3675 3768 0.911769 CAAGCCCACTCCCATAGACA 59.088 55.000 0.00 0.00 0.00 3.41
3676 3769 0.181350 CCAAGCCCACTCCCATAGAC 59.819 60.000 0.00 0.00 0.00 2.59
3677 3770 1.635817 GCCAAGCCCACTCCCATAGA 61.636 60.000 0.00 0.00 0.00 1.98
3678 3771 1.152881 GCCAAGCCCACTCCCATAG 60.153 63.158 0.00 0.00 0.00 2.23
3679 3772 2.689691 GGCCAAGCCCACTCCCATA 61.690 63.158 0.00 0.00 44.06 2.74
3680 3773 4.066139 GGCCAAGCCCACTCCCAT 62.066 66.667 0.00 0.00 44.06 4.00
3690 3783 1.367471 GGAACAACAAGGGCCAAGC 59.633 57.895 6.18 0.00 0.00 4.01
3691 3784 1.659794 CGGAACAACAAGGGCCAAG 59.340 57.895 6.18 0.00 0.00 3.61
3692 3785 1.830408 CCGGAACAACAAGGGCCAA 60.830 57.895 6.18 0.00 0.00 4.52
3693 3786 2.203422 CCGGAACAACAAGGGCCA 60.203 61.111 6.18 0.00 0.00 5.36
3694 3787 1.396607 AAACCGGAACAACAAGGGCC 61.397 55.000 9.46 0.00 0.00 5.80
3695 3788 0.462375 AAAACCGGAACAACAAGGGC 59.538 50.000 9.46 0.00 0.00 5.19
3696 3789 2.545731 CAAAAACCGGAACAACAAGGG 58.454 47.619 9.46 0.00 0.00 3.95
3697 3790 1.930503 GCAAAAACCGGAACAACAAGG 59.069 47.619 9.46 0.00 0.00 3.61
3698 3791 1.930503 GGCAAAAACCGGAACAACAAG 59.069 47.619 9.46 0.00 0.00 3.16
3699 3792 1.405661 GGGCAAAAACCGGAACAACAA 60.406 47.619 9.46 0.00 0.00 2.83
3700 3793 0.175989 GGGCAAAAACCGGAACAACA 59.824 50.000 9.46 0.00 0.00 3.33
3701 3794 2.980562 GGGCAAAAACCGGAACAAC 58.019 52.632 9.46 0.00 0.00 3.32
3709 3802 0.876777 CGGAAAACCGGGCAAAAACC 60.877 55.000 6.32 0.00 0.00 3.27
3710 3803 0.179105 ACGGAAAACCGGGCAAAAAC 60.179 50.000 6.32 0.00 37.53 2.43
3711 3804 1.396653 TACGGAAAACCGGGCAAAAA 58.603 45.000 6.32 0.00 37.53 1.94
3712 3805 1.396653 TTACGGAAAACCGGGCAAAA 58.603 45.000 6.32 0.00 37.53 2.44
3713 3806 1.618487 ATTACGGAAAACCGGGCAAA 58.382 45.000 6.32 2.84 37.53 3.68
3714 3807 1.618487 AATTACGGAAAACCGGGCAA 58.382 45.000 6.32 4.72 37.53 4.52
3715 3808 2.486472 TAATTACGGAAAACCGGGCA 57.514 45.000 6.32 0.00 37.53 5.36
3716 3809 2.749076 AGTTAATTACGGAAAACCGGGC 59.251 45.455 6.32 0.00 37.53 6.13
3717 3810 3.127376 CCAGTTAATTACGGAAAACCGGG 59.873 47.826 6.32 0.00 37.53 5.73
3718 3811 3.127376 CCCAGTTAATTACGGAAAACCGG 59.873 47.826 13.05 0.00 37.53 5.28
3719 3812 3.426560 GCCCAGTTAATTACGGAAAACCG 60.427 47.826 7.12 7.12 39.31 4.44
3720 3813 3.506844 TGCCCAGTTAATTACGGAAAACC 59.493 43.478 0.00 0.00 0.00 3.27
3721 3814 4.769859 TGCCCAGTTAATTACGGAAAAC 57.230 40.909 0.00 0.00 0.00 2.43
3722 3815 5.986501 ATTGCCCAGTTAATTACGGAAAA 57.013 34.783 0.00 0.00 0.00 2.29
3723 3816 5.712917 AGAATTGCCCAGTTAATTACGGAAA 59.287 36.000 0.00 0.00 0.00 3.13
3724 3817 5.258051 AGAATTGCCCAGTTAATTACGGAA 58.742 37.500 0.00 0.00 0.00 4.30
3725 3818 4.850680 AGAATTGCCCAGTTAATTACGGA 58.149 39.130 0.00 0.00 0.00 4.69
3726 3819 4.881850 AGAGAATTGCCCAGTTAATTACGG 59.118 41.667 0.00 0.00 0.00 4.02
3727 3820 6.316390 AGAAGAGAATTGCCCAGTTAATTACG 59.684 38.462 0.00 0.00 0.00 3.18
3728 3821 7.475840 CAGAAGAGAATTGCCCAGTTAATTAC 58.524 38.462 0.00 0.00 0.00 1.89
3729 3822 6.095440 GCAGAAGAGAATTGCCCAGTTAATTA 59.905 38.462 0.00 0.00 31.79 1.40
3730 3823 5.105595 GCAGAAGAGAATTGCCCAGTTAATT 60.106 40.000 0.00 0.00 31.79 1.40
3731 3824 4.400567 GCAGAAGAGAATTGCCCAGTTAAT 59.599 41.667 0.00 0.00 31.79 1.40
3732 3825 3.758554 GCAGAAGAGAATTGCCCAGTTAA 59.241 43.478 0.00 0.00 31.79 2.01
3733 3826 3.009473 AGCAGAAGAGAATTGCCCAGTTA 59.991 43.478 0.00 0.00 38.58 2.24
3734 3827 2.165998 GCAGAAGAGAATTGCCCAGTT 58.834 47.619 0.00 0.00 31.79 3.16
3735 3828 1.353694 AGCAGAAGAGAATTGCCCAGT 59.646 47.619 0.00 0.00 38.58 4.00
3736 3829 2.125773 AGCAGAAGAGAATTGCCCAG 57.874 50.000 0.00 0.00 38.58 4.45
3737 3830 2.592102 AAGCAGAAGAGAATTGCCCA 57.408 45.000 0.00 0.00 38.58 5.36
3738 3831 5.588958 AATTAAGCAGAAGAGAATTGCCC 57.411 39.130 0.00 0.00 38.58 5.36
3739 3832 9.890352 CTATTAATTAAGCAGAAGAGAATTGCC 57.110 33.333 3.94 0.00 38.58 4.52
3746 3839 8.934825 GCCTCATCTATTAATTAAGCAGAAGAG 58.065 37.037 22.81 22.81 32.10 2.85
3747 3840 8.432013 TGCCTCATCTATTAATTAAGCAGAAGA 58.568 33.333 13.43 13.18 0.00 2.87
3748 3841 8.613060 TGCCTCATCTATTAATTAAGCAGAAG 57.387 34.615 13.43 10.54 0.00 2.85
3749 3842 8.978874 TTGCCTCATCTATTAATTAAGCAGAA 57.021 30.769 13.43 2.08 0.00 3.02
3750 3843 9.224267 GATTGCCTCATCTATTAATTAAGCAGA 57.776 33.333 12.33 12.33 0.00 4.26
3751 3844 9.228949 AGATTGCCTCATCTATTAATTAAGCAG 57.771 33.333 3.94 4.02 0.00 4.24
3752 3845 9.578576 AAGATTGCCTCATCTATTAATTAAGCA 57.421 29.630 3.94 2.63 0.00 3.91
3772 3865 1.804151 TCGAAACGGAGGCAAAGATTG 59.196 47.619 0.00 0.00 0.00 2.67
3773 3866 2.178912 TCGAAACGGAGGCAAAGATT 57.821 45.000 0.00 0.00 0.00 2.40
3774 3867 2.178912 TTCGAAACGGAGGCAAAGAT 57.821 45.000 0.00 0.00 0.00 2.40
3775 3868 1.956297 TTTCGAAACGGAGGCAAAGA 58.044 45.000 6.47 0.00 0.00 2.52
3776 3869 2.289547 TCTTTTCGAAACGGAGGCAAAG 59.710 45.455 10.79 2.06 0.00 2.77
3777 3870 2.290464 TCTTTTCGAAACGGAGGCAAA 58.710 42.857 10.79 0.00 0.00 3.68
3778 3871 1.956297 TCTTTTCGAAACGGAGGCAA 58.044 45.000 10.79 0.00 0.00 4.52
3779 3872 1.956297 TTCTTTTCGAAACGGAGGCA 58.044 45.000 10.79 0.00 0.00 4.75
3780 3873 3.242969 ACTTTTCTTTTCGAAACGGAGGC 60.243 43.478 10.79 0.00 41.13 4.70
3781 3874 4.547406 ACTTTTCTTTTCGAAACGGAGG 57.453 40.909 10.79 4.92 41.13 4.30
3789 3882 9.607988 TGCCTGATATATAACTTTTCTTTTCGA 57.392 29.630 0.00 0.00 0.00 3.71
3790 3883 9.651718 GTGCCTGATATATAACTTTTCTTTTCG 57.348 33.333 0.00 0.00 0.00 3.46
3791 3884 9.952188 GGTGCCTGATATATAACTTTTCTTTTC 57.048 33.333 0.00 0.00 0.00 2.29
3792 3885 8.621286 CGGTGCCTGATATATAACTTTTCTTTT 58.379 33.333 0.00 0.00 0.00 2.27
3793 3886 7.228706 CCGGTGCCTGATATATAACTTTTCTTT 59.771 37.037 0.00 0.00 0.00 2.52
3794 3887 6.710744 CCGGTGCCTGATATATAACTTTTCTT 59.289 38.462 0.00 0.00 0.00 2.52
3795 3888 6.231211 CCGGTGCCTGATATATAACTTTTCT 58.769 40.000 0.00 0.00 0.00 2.52
3796 3889 5.106673 GCCGGTGCCTGATATATAACTTTTC 60.107 44.000 1.90 0.00 0.00 2.29
3797 3890 4.760204 GCCGGTGCCTGATATATAACTTTT 59.240 41.667 1.90 0.00 0.00 2.27
3798 3891 4.324267 GCCGGTGCCTGATATATAACTTT 58.676 43.478 1.90 0.00 0.00 2.66
3799 3892 3.939066 GCCGGTGCCTGATATATAACTT 58.061 45.455 1.90 0.00 0.00 2.66
3800 3893 3.611766 GCCGGTGCCTGATATATAACT 57.388 47.619 1.90 0.00 0.00 2.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.