Multiple sequence alignment - TraesCS2B01G430500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G430500 chr2B 100.000 1783 0 0 550 2332 619390840 619392622 0.000000e+00 3293.0
1 TraesCS2B01G430500 chr2B 100.000 307 0 0 1 307 619390291 619390597 3.360000e-158 568.0
2 TraesCS2B01G430500 chr2D 88.228 824 74 13 638 1454 524039121 524039928 0.000000e+00 963.0
3 TraesCS2B01G430500 chr2D 88.780 508 35 8 1440 1947 524045247 524045732 9.220000e-169 603.0
4 TraesCS2B01G430500 chr2D 87.687 268 20 5 1 256 524038739 524039005 1.350000e-77 300.0
5 TraesCS2B01G430500 chr2D 91.304 92 8 0 1532 1623 141479472 141479563 2.430000e-25 126.0
6 TraesCS2B01G430500 chr2D 89.744 78 6 2 1531 1607 359195636 359195560 5.300000e-17 99.0
7 TraesCS2B01G430500 chr2A 87.621 824 77 14 641 1454 669627420 669628228 0.000000e+00 933.0
8 TraesCS2B01G430500 chr2A 91.296 494 33 5 1481 1974 669631798 669632281 0.000000e+00 665.0
9 TraesCS2B01G430500 chr2A 90.650 246 15 3 12 250 669627067 669627311 1.040000e-83 320.0
10 TraesCS2B01G430500 chr4D 95.640 367 15 1 1966 2332 309708296 309708661 2.580000e-164 588.0
11 TraesCS2B01G430500 chr7A 95.798 357 12 3 1974 2329 206960018 206960372 7.230000e-160 573.0
12 TraesCS2B01G430500 chr5B 95.265 359 15 2 1974 2332 244124343 244123987 3.360000e-158 568.0
13 TraesCS2B01G430500 chr5B 87.013 77 10 0 1531 1607 71906556 71906632 1.150000e-13 87.9
14 TraesCS2B01G430500 chr3D 94.986 359 15 3 1974 2332 308773744 308773389 5.630000e-156 560.0
15 TraesCS2B01G430500 chr3D 81.096 365 46 14 1980 2332 68395121 68394768 1.060000e-68 270.0
16 TraesCS2B01G430500 chr4B 95.211 355 14 3 1975 2329 97249206 97249557 2.020000e-155 558.0
17 TraesCS2B01G430500 chr6B 91.848 368 26 4 1966 2332 664287840 664288204 5.750000e-141 510.0
18 TraesCS2B01G430500 chr6D 96.957 230 6 1 2103 2332 352829069 352828841 3.640000e-103 385.0
19 TraesCS2B01G430500 chr7B 80.168 358 58 9 1972 2326 403407752 403408099 2.970000e-64 255.0
20 TraesCS2B01G430500 chr7B 85.714 91 13 0 1532 1622 72283237 72283147 1.910000e-16 97.1
21 TraesCS2B01G430500 chr5D 78.049 369 52 13 1977 2325 436970550 436970191 3.040000e-49 206.0
22 TraesCS2B01G430500 chr5D 89.744 78 6 2 1531 1607 84982089 84982013 5.300000e-17 99.0
23 TraesCS2B01G430500 chr1A 87.912 91 9 2 1538 1627 107482053 107481964 3.170000e-19 106.0
24 TraesCS2B01G430500 chr1A 84.211 95 15 0 1531 1625 51217191 51217097 2.470000e-15 93.5
25 TraesCS2B01G430500 chr1B 89.744 78 6 2 1531 1607 408728309 408728385 5.300000e-17 99.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G430500 chr2B 619390291 619392622 2331 False 1930.500000 3293 100.000000 1 2332 2 chr2B.!!$F1 2331
1 TraesCS2B01G430500 chr2D 524038739 524039928 1189 False 631.500000 963 87.957500 1 1454 2 chr2D.!!$F3 1453
2 TraesCS2B01G430500 chr2A 669627067 669632281 5214 False 639.333333 933 89.855667 12 1974 3 chr2A.!!$F1 1962

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
292 305 0.110295 GGCCTGGCCCATTTGTTTTT 59.89 50.0 27.77 0.0 44.06 1.94 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2105 5672 0.037697 ACTTGCCACGTCAGCGAATA 60.038 50.0 2.87 0.0 42.0 1.75 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
54 56 9.137459 TGGTTGTTGAAGATTTTAGGAAACATA 57.863 29.630 0.00 0.00 0.00 2.29
174 186 9.635404 TTTTACCTATGAGTTTTTCTTTCTGGA 57.365 29.630 0.00 0.00 0.00 3.86
198 210 3.971453 TACTCTGCGTGCGAGCTGC 62.971 63.158 0.00 0.00 46.70 5.25
214 226 2.032924 AGCTGCGGTTTTGTTGTAGTTC 59.967 45.455 0.00 0.00 0.00 3.01
224 236 7.249858 GGTTTTGTTGTAGTTCGGTAGAAAAA 58.750 34.615 0.00 0.00 38.23 1.94
256 269 6.857777 TTTTTGGCATGTTATTGTGAAAGG 57.142 33.333 0.00 0.00 0.00 3.11
257 270 5.798125 TTTGGCATGTTATTGTGAAAGGA 57.202 34.783 0.00 0.00 0.00 3.36
258 271 5.389859 TTGGCATGTTATTGTGAAAGGAG 57.610 39.130 0.00 0.00 0.00 3.69
259 272 3.193267 TGGCATGTTATTGTGAAAGGAGC 59.807 43.478 0.00 0.00 0.00 4.70
260 273 3.193267 GGCATGTTATTGTGAAAGGAGCA 59.807 43.478 0.00 0.00 0.00 4.26
261 274 4.321899 GGCATGTTATTGTGAAAGGAGCAA 60.322 41.667 0.00 0.00 0.00 3.91
265 278 4.213270 TGTTATTGTGAAAGGAGCAACGAG 59.787 41.667 0.00 0.00 0.00 4.18
267 280 1.865865 TGTGAAAGGAGCAACGAGAC 58.134 50.000 0.00 0.00 0.00 3.36
277 290 3.626924 AACGAGACCTTGCGGCCT 61.627 61.111 0.00 0.00 0.00 5.19
291 304 1.760527 GGCCTGGCCCATTTGTTTT 59.239 52.632 27.77 0.00 44.06 2.43
292 305 0.110295 GGCCTGGCCCATTTGTTTTT 59.890 50.000 27.77 0.00 44.06 1.94
300 313 2.183478 CCATTTGTTTTTGGGGGCTC 57.817 50.000 0.00 0.00 0.00 4.70
301 314 1.419387 CCATTTGTTTTTGGGGGCTCA 59.581 47.619 0.00 0.00 0.00 4.26
303 316 0.461961 TTTGTTTTTGGGGGCTCACG 59.538 50.000 0.00 0.00 0.00 4.35
304 317 0.395862 TTGTTTTTGGGGGCTCACGA 60.396 50.000 0.00 0.00 0.00 4.35
305 318 0.178975 TGTTTTTGGGGGCTCACGAT 60.179 50.000 0.00 0.00 0.00 3.73
306 319 0.526211 GTTTTTGGGGGCTCACGATC 59.474 55.000 0.00 0.00 0.00 3.69
570 584 2.078914 CGCGACGTCACACCTGTAC 61.079 63.158 17.16 0.00 0.00 2.90
572 586 1.441515 CGACGTCACACCTGTACCG 60.442 63.158 17.16 0.00 0.00 4.02
575 589 0.461135 ACGTCACACCTGTACCGTTT 59.539 50.000 0.00 0.00 32.19 3.60
591 605 1.954146 TTTCAGTGCGGACGCTCAC 60.954 57.895 18.04 8.56 42.51 3.51
594 608 4.664677 AGTGCGGACGCTCACACC 62.665 66.667 18.04 0.00 42.51 4.16
598 612 3.991051 CGGACGCTCACACCCTGT 61.991 66.667 0.00 0.00 0.00 4.00
599 613 2.632544 CGGACGCTCACACCCTGTA 61.633 63.158 0.00 0.00 0.00 2.74
600 614 1.080025 GGACGCTCACACCCTGTAC 60.080 63.158 0.00 0.00 0.00 2.90
601 615 1.080025 GACGCTCACACCCTGTACC 60.080 63.158 0.00 0.00 0.00 3.34
602 616 2.264794 CGCTCACACCCTGTACCC 59.735 66.667 0.00 0.00 0.00 3.69
603 617 2.283529 CGCTCACACCCTGTACCCT 61.284 63.158 0.00 0.00 0.00 4.34
604 618 1.827399 CGCTCACACCCTGTACCCTT 61.827 60.000 0.00 0.00 0.00 3.95
605 619 0.400594 GCTCACACCCTGTACCCTTT 59.599 55.000 0.00 0.00 0.00 3.11
606 620 1.610886 GCTCACACCCTGTACCCTTTC 60.611 57.143 0.00 0.00 0.00 2.62
607 621 1.697432 CTCACACCCTGTACCCTTTCA 59.303 52.381 0.00 0.00 0.00 2.69
608 622 2.105821 CTCACACCCTGTACCCTTTCAA 59.894 50.000 0.00 0.00 0.00 2.69
609 623 2.158726 TCACACCCTGTACCCTTTCAAC 60.159 50.000 0.00 0.00 0.00 3.18
610 624 1.847737 ACACCCTGTACCCTTTCAACA 59.152 47.619 0.00 0.00 0.00 3.33
611 625 2.227194 CACCCTGTACCCTTTCAACAC 58.773 52.381 0.00 0.00 0.00 3.32
612 626 1.202722 ACCCTGTACCCTTTCAACACG 60.203 52.381 0.00 0.00 0.00 4.49
613 627 1.071071 CCCTGTACCCTTTCAACACGA 59.929 52.381 0.00 0.00 0.00 4.35
614 628 2.485835 CCCTGTACCCTTTCAACACGAA 60.486 50.000 0.00 0.00 0.00 3.85
615 629 2.546789 CCTGTACCCTTTCAACACGAAC 59.453 50.000 0.00 0.00 31.73 3.95
616 630 2.203401 TGTACCCTTTCAACACGAACG 58.797 47.619 0.00 0.00 31.73 3.95
617 631 1.070376 GTACCCTTTCAACACGAACGC 60.070 52.381 0.00 0.00 31.73 4.84
618 632 0.463116 ACCCTTTCAACACGAACGCT 60.463 50.000 0.00 0.00 31.73 5.07
619 633 0.234884 CCCTTTCAACACGAACGCTC 59.765 55.000 0.00 0.00 31.73 5.03
628 642 2.430921 CGAACGCTCGCACCTTCT 60.431 61.111 0.00 0.00 38.45 2.85
629 643 1.154093 CGAACGCTCGCACCTTCTA 60.154 57.895 0.00 0.00 38.45 2.10
630 644 1.403972 CGAACGCTCGCACCTTCTAC 61.404 60.000 0.00 0.00 38.45 2.59
631 645 1.077089 GAACGCTCGCACCTTCTACC 61.077 60.000 0.00 0.00 0.00 3.18
632 646 2.579787 CGCTCGCACCTTCTACCG 60.580 66.667 0.00 0.00 0.00 4.02
633 647 2.572284 GCTCGCACCTTCTACCGT 59.428 61.111 0.00 0.00 0.00 4.83
634 648 1.080025 GCTCGCACCTTCTACCGTT 60.080 57.895 0.00 0.00 0.00 4.44
635 649 1.077089 GCTCGCACCTTCTACCGTTC 61.077 60.000 0.00 0.00 0.00 3.95
636 650 0.242825 CTCGCACCTTCTACCGTTCA 59.757 55.000 0.00 0.00 0.00 3.18
637 651 0.675083 TCGCACCTTCTACCGTTCAA 59.325 50.000 0.00 0.00 0.00 2.69
638 652 1.068895 TCGCACCTTCTACCGTTCAAA 59.931 47.619 0.00 0.00 0.00 2.69
639 653 1.193874 CGCACCTTCTACCGTTCAAAC 59.806 52.381 0.00 0.00 0.00 2.93
649 663 4.582452 GTTCAAACGGTCACACGC 57.418 55.556 0.00 0.00 37.37 5.34
651 665 0.315869 GTTCAAACGGTCACACGCAG 60.316 55.000 0.00 0.00 37.37 5.18
666 680 1.813753 GCAGACCTTTGCGCGGATA 60.814 57.895 8.83 0.00 33.90 2.59
667 681 1.766143 GCAGACCTTTGCGCGGATAG 61.766 60.000 8.83 10.08 33.90 2.08
668 682 1.144057 AGACCTTTGCGCGGATAGG 59.856 57.895 29.94 29.94 0.00 2.57
678 692 0.248743 CGCGGATAGGTTACTTCGCA 60.249 55.000 0.00 0.00 38.43 5.10
682 696 3.454375 CGGATAGGTTACTTCGCATTGT 58.546 45.455 0.00 0.00 0.00 2.71
699 713 0.780637 TGTGGCAATTAGGGGGAACA 59.219 50.000 0.00 0.00 0.00 3.18
701 715 1.080638 TGGCAATTAGGGGGAACAGT 58.919 50.000 0.00 0.00 0.00 3.55
711 725 0.669625 GGGGAACAGTCACGTGCTAC 60.670 60.000 11.67 4.80 0.00 3.58
726 740 0.168128 GCTACGCGCATCCTTTTTGT 59.832 50.000 5.73 0.00 38.92 2.83
727 741 1.401018 GCTACGCGCATCCTTTTTGTT 60.401 47.619 5.73 0.00 38.92 2.83
728 742 2.159626 GCTACGCGCATCCTTTTTGTTA 60.160 45.455 5.73 0.00 38.92 2.41
729 743 3.486875 GCTACGCGCATCCTTTTTGTTAT 60.487 43.478 5.73 0.00 38.92 1.89
730 744 3.569250 ACGCGCATCCTTTTTGTTATT 57.431 38.095 5.73 0.00 0.00 1.40
731 745 4.688511 ACGCGCATCCTTTTTGTTATTA 57.311 36.364 5.73 0.00 0.00 0.98
732 746 4.658071 ACGCGCATCCTTTTTGTTATTAG 58.342 39.130 5.73 0.00 0.00 1.73
733 747 4.393680 ACGCGCATCCTTTTTGTTATTAGA 59.606 37.500 5.73 0.00 0.00 2.10
734 748 4.728608 CGCGCATCCTTTTTGTTATTAGAC 59.271 41.667 8.75 0.00 0.00 2.59
735 749 5.636837 GCGCATCCTTTTTGTTATTAGACA 58.363 37.500 0.30 0.00 0.00 3.41
756 770 1.131126 ACTATACGTCACACCGTTCGG 59.869 52.381 9.81 9.81 42.00 4.30
801 815 1.223487 GGAGACCCTTGCGCCATTA 59.777 57.895 4.18 0.00 0.00 1.90
804 818 1.103398 AGACCCTTGCGCCATTATGC 61.103 55.000 4.18 0.00 0.00 3.14
856 870 1.010419 GGAACGGTCACGCGTTATGT 61.010 55.000 10.22 2.69 46.04 2.29
859 873 2.376538 CGGTCACGCGTTATGTGCA 61.377 57.895 10.22 0.00 37.26 4.57
881 895 7.653311 GTGCATCCTTTTTATTATTGGACATCC 59.347 37.037 0.00 0.00 0.00 3.51
915 929 8.732746 ATTACCACATTACAAGTTATCCTCAC 57.267 34.615 0.00 0.00 0.00 3.51
927 941 4.080299 AGTTATCCTCACATTCTTCCCACC 60.080 45.833 0.00 0.00 0.00 4.61
931 945 2.552155 CCTCACATTCTTCCCACCGAAA 60.552 50.000 0.00 0.00 0.00 3.46
933 947 3.343617 TCACATTCTTCCCACCGAAATC 58.656 45.455 0.00 0.00 0.00 2.17
975 990 0.883833 AGCTGCAAGAACCAAATCCG 59.116 50.000 1.02 0.00 34.07 4.18
996 1011 2.362397 GTCATCCATGACGAAGCCTCTA 59.638 50.000 3.96 0.00 46.46 2.43
1015 1036 0.324645 ACCCATGGCCAACATCTTCC 60.325 55.000 10.96 0.00 37.84 3.46
1116 1137 2.416162 CGTTGCAGGTACTTCCTCTCTC 60.416 54.545 0.00 0.00 46.24 3.20
1126 1147 3.373830 ACTTCCTCTCTCCAGATCCAAG 58.626 50.000 0.00 0.00 0.00 3.61
1140 1161 8.391075 TCCAGATCCAAGTAAACAAAGTAAAG 57.609 34.615 0.00 0.00 0.00 1.85
1147 1168 6.349033 CCAAGTAAACAAAGTAAAGCGCCTAT 60.349 38.462 2.29 0.00 0.00 2.57
1198 1219 2.306805 TGTTTGCATCAGGTGAGGAGAT 59.693 45.455 0.00 0.00 0.00 2.75
1222 1243 1.793134 GATCGCCATCTACCCGACGT 61.793 60.000 0.00 0.00 33.46 4.34
1223 1244 2.071844 ATCGCCATCTACCCGACGTG 62.072 60.000 0.00 0.00 33.46 4.49
1224 1245 2.890371 GCCATCTACCCGACGTGT 59.110 61.111 0.00 0.00 0.00 4.49
1336 1357 2.715763 TCCCCCTCTGTCTAACTGTT 57.284 50.000 0.00 0.00 0.00 3.16
1337 1358 2.986050 TCCCCCTCTGTCTAACTGTTT 58.014 47.619 0.00 0.00 0.00 2.83
1338 1359 2.637872 TCCCCCTCTGTCTAACTGTTTG 59.362 50.000 0.00 0.00 0.00 2.93
1339 1360 2.372172 CCCCCTCTGTCTAACTGTTTGT 59.628 50.000 0.00 0.00 0.00 2.83
1340 1361 3.403038 CCCCTCTGTCTAACTGTTTGTG 58.597 50.000 0.00 0.00 0.00 3.33
1341 1362 3.071023 CCCCTCTGTCTAACTGTTTGTGA 59.929 47.826 0.00 0.00 0.00 3.58
1342 1363 4.058817 CCCTCTGTCTAACTGTTTGTGAC 58.941 47.826 0.00 6.26 0.00 3.67
1343 1364 4.202264 CCCTCTGTCTAACTGTTTGTGACT 60.202 45.833 16.14 0.00 0.00 3.41
1346 1367 6.016192 CCTCTGTCTAACTGTTTGTGACTCTA 60.016 42.308 16.14 6.53 0.00 2.43
1351 1372 6.090088 GTCTAACTGTTTGTGACTCTATGCAG 59.910 42.308 0.00 0.00 0.00 4.41
1359 1380 3.382865 TGTGACTCTATGCAGACCTGATC 59.617 47.826 0.47 0.00 0.00 2.92
1413 1437 7.601705 TCAGATGATGTGTCCTGTATGATTA 57.398 36.000 0.00 0.00 0.00 1.75
1445 1469 3.089284 TCTTCACTCGCTTCCAGATGTA 58.911 45.455 0.00 0.00 0.00 2.29
1454 1478 4.035558 TCGCTTCCAGATGTATTGAATTGC 59.964 41.667 0.00 0.00 0.00 3.56
1455 1479 4.614946 GCTTCCAGATGTATTGAATTGCC 58.385 43.478 0.00 0.00 0.00 4.52
1456 1480 4.098349 GCTTCCAGATGTATTGAATTGCCA 59.902 41.667 0.00 0.00 0.00 4.92
1457 1481 5.221382 GCTTCCAGATGTATTGAATTGCCAT 60.221 40.000 0.00 0.00 0.00 4.40
1458 1482 5.777850 TCCAGATGTATTGAATTGCCATG 57.222 39.130 0.00 0.00 0.00 3.66
1459 1483 5.447757 TCCAGATGTATTGAATTGCCATGA 58.552 37.500 0.00 0.00 0.00 3.07
1461 1485 6.551975 TCCAGATGTATTGAATTGCCATGAAT 59.448 34.615 0.00 0.00 0.00 2.57
1462 1486 7.724951 TCCAGATGTATTGAATTGCCATGAATA 59.275 33.333 0.00 0.00 0.00 1.75
1464 1488 9.353999 CAGATGTATTGAATTGCCATGAATATG 57.646 33.333 0.00 0.00 0.00 1.78
1465 1489 8.033038 AGATGTATTGAATTGCCATGAATATGC 58.967 33.333 0.00 0.00 32.79 3.14
1466 1490 7.052142 TGTATTGAATTGCCATGAATATGCA 57.948 32.000 0.00 0.00 32.79 3.96
1467 1491 6.924612 TGTATTGAATTGCCATGAATATGCAC 59.075 34.615 0.00 0.00 32.79 4.57
1468 1492 5.601583 TTGAATTGCCATGAATATGCACT 57.398 34.783 0.00 0.00 32.79 4.40
1469 1493 5.601583 TGAATTGCCATGAATATGCACTT 57.398 34.783 0.00 0.00 32.79 3.16
1470 1494 5.593968 TGAATTGCCATGAATATGCACTTC 58.406 37.500 13.41 13.41 34.52 3.01
1471 1495 5.127356 TGAATTGCCATGAATATGCACTTCA 59.873 36.000 16.88 16.88 37.48 3.02
1492 5059 3.979101 TGCACATGTGATAGACAAGGA 57.021 42.857 29.80 0.00 38.36 3.36
1525 5092 4.048504 TCTTGACGTTGTGTGTCACATAG 58.951 43.478 9.31 3.94 45.42 2.23
1540 5107 7.034397 GTGTCACATAGAAAAGTACTACCTCC 58.966 42.308 0.00 0.00 0.00 4.30
1543 5110 6.435277 TCACATAGAAAAGTACTACCTCCGTT 59.565 38.462 0.00 0.00 0.00 4.44
1559 5126 3.641648 TCCGTTCGAAATTAGTTGTCGT 58.358 40.909 0.00 0.00 36.21 4.34
1567 5134 6.367421 TCGAAATTAGTTGTCGTTGAAATGG 58.633 36.000 0.00 0.00 36.21 3.16
1580 5147 7.653311 TGTCGTTGAAATGGATGTATCTAGATG 59.347 37.037 15.79 0.00 0.00 2.90
1611 5178 6.974932 ATGCTAGATACATCCATTTAAGCG 57.025 37.500 0.00 0.00 0.00 4.68
1613 5180 6.701340 TGCTAGATACATCCATTTAAGCGAT 58.299 36.000 0.00 0.00 0.00 4.58
1616 5183 9.151471 GCTAGATACATCCATTTAAGCGATAAA 57.849 33.333 0.00 1.09 37.86 1.40
1654 5221 7.430441 TCCTACAAAATCGAATCGATATGACA 58.570 34.615 26.90 17.19 46.30 3.58
1710 5277 6.094464 TGAACTTGATGCATGTTCTTCCTATG 59.906 38.462 21.97 0.00 43.91 2.23
1719 5286 8.347004 TGCATGTTCTTCCTATGTAAAATTGA 57.653 30.769 0.00 0.00 0.00 2.57
1743 5310 4.722361 AGAACTGGATCCGTTTCTAGTC 57.278 45.455 20.90 9.62 36.54 2.59
1748 5315 4.208746 CTGGATCCGTTTCTAGTCCTAGT 58.791 47.826 7.39 0.00 34.84 2.57
1755 5322 3.693085 CGTTTCTAGTCCTAGTGCCTGTA 59.307 47.826 1.49 0.00 34.84 2.74
1759 5326 4.868268 TCTAGTCCTAGTGCCTGTATTGT 58.132 43.478 1.49 0.00 34.84 2.71
1760 5327 3.895232 AGTCCTAGTGCCTGTATTGTG 57.105 47.619 0.00 0.00 0.00 3.33
1765 5332 2.781681 AGTGCCTGTATTGTGGTACC 57.218 50.000 4.43 4.43 39.29 3.34
1766 5333 1.066430 AGTGCCTGTATTGTGGTACCG 60.066 52.381 7.57 0.00 39.29 4.02
1767 5334 0.978151 TGCCTGTATTGTGGTACCGT 59.022 50.000 7.57 0.00 0.00 4.83
1768 5335 2.094078 GTGCCTGTATTGTGGTACCGTA 60.094 50.000 7.57 0.00 33.72 4.02
1769 5336 2.094078 TGCCTGTATTGTGGTACCGTAC 60.094 50.000 7.57 8.28 0.00 3.67
1771 5338 3.368739 GCCTGTATTGTGGTACCGTACTT 60.369 47.826 7.57 0.00 0.00 2.24
1772 5339 4.142182 GCCTGTATTGTGGTACCGTACTTA 60.142 45.833 7.57 0.00 0.00 2.24
1773 5340 5.452356 GCCTGTATTGTGGTACCGTACTTAT 60.452 44.000 7.57 2.29 0.00 1.73
1774 5341 6.576185 CCTGTATTGTGGTACCGTACTTATT 58.424 40.000 7.57 0.00 0.00 1.40
1775 5342 7.684187 GCCTGTATTGTGGTACCGTACTTATTA 60.684 40.741 7.57 0.00 0.00 0.98
1776 5343 8.362639 CCTGTATTGTGGTACCGTACTTATTAT 58.637 37.037 7.57 0.48 0.00 1.28
1777 5344 9.188588 CTGTATTGTGGTACCGTACTTATTATG 57.811 37.037 7.57 0.00 0.00 1.90
1778 5345 8.694540 TGTATTGTGGTACCGTACTTATTATGT 58.305 33.333 7.57 0.00 0.00 2.29
1779 5346 8.971321 GTATTGTGGTACCGTACTTATTATGTG 58.029 37.037 7.57 0.00 0.00 3.21
1909 5476 2.825532 GCAGTTCCTGAAATAAGGCCAA 59.174 45.455 5.01 0.00 37.24 4.52
1912 5479 4.156739 CAGTTCCTGAAATAAGGCCAAGAC 59.843 45.833 5.01 0.00 37.24 3.01
1919 5486 5.007034 TGAAATAAGGCCAAGACGAAATGA 58.993 37.500 5.01 0.00 0.00 2.57
1976 5543 9.793259 CCTACATAGGCAATAATTTAGAAAGGA 57.207 33.333 0.00 0.00 36.53 3.36
2015 5582 8.843885 AAACCTTAAACTTATAGACGAAAGCT 57.156 30.769 0.00 0.00 0.00 3.74
2016 5583 9.933723 AAACCTTAAACTTATAGACGAAAGCTA 57.066 29.630 0.00 0.00 0.00 3.32
2017 5584 9.933723 AACCTTAAACTTATAGACGAAAGCTAA 57.066 29.630 0.00 0.00 0.00 3.09
2018 5585 9.933723 ACCTTAAACTTATAGACGAAAGCTAAA 57.066 29.630 0.00 0.00 0.00 1.85
2025 5592 8.880750 ACTTATAGACGAAAGCTAAATCAAACC 58.119 33.333 0.00 0.00 0.00 3.27
2026 5593 6.679327 ATAGACGAAAGCTAAATCAAACCC 57.321 37.500 0.00 0.00 0.00 4.11
2027 5594 4.652822 AGACGAAAGCTAAATCAAACCCT 58.347 39.130 0.00 0.00 0.00 4.34
2028 5595 4.455877 AGACGAAAGCTAAATCAAACCCTG 59.544 41.667 0.00 0.00 0.00 4.45
2029 5596 4.394729 ACGAAAGCTAAATCAAACCCTGA 58.605 39.130 0.00 0.00 38.81 3.86
2030 5597 4.825085 ACGAAAGCTAAATCAAACCCTGAA 59.175 37.500 0.00 0.00 37.67 3.02
2031 5598 5.154222 CGAAAGCTAAATCAAACCCTGAAC 58.846 41.667 0.00 0.00 37.67 3.18
2032 5599 5.048713 CGAAAGCTAAATCAAACCCTGAACT 60.049 40.000 0.00 0.00 37.67 3.01
2033 5600 6.515035 CGAAAGCTAAATCAAACCCTGAACTT 60.515 38.462 0.00 0.00 37.67 2.66
2034 5601 5.712152 AGCTAAATCAAACCCTGAACTTG 57.288 39.130 0.00 0.00 37.67 3.16
2035 5602 4.021981 AGCTAAATCAAACCCTGAACTTGC 60.022 41.667 0.00 0.00 37.67 4.01
2036 5603 4.261994 GCTAAATCAAACCCTGAACTTGCA 60.262 41.667 0.00 0.00 37.67 4.08
2037 5604 4.751767 AAATCAAACCCTGAACTTGCAA 57.248 36.364 0.00 0.00 37.67 4.08
2038 5605 4.961438 AATCAAACCCTGAACTTGCAAT 57.039 36.364 0.00 0.00 37.67 3.56
2039 5606 4.525912 ATCAAACCCTGAACTTGCAATC 57.474 40.909 0.00 0.00 37.67 2.67
2040 5607 3.565307 TCAAACCCTGAACTTGCAATCT 58.435 40.909 0.00 0.00 0.00 2.40
2041 5608 3.569701 TCAAACCCTGAACTTGCAATCTC 59.430 43.478 0.00 0.00 0.00 2.75
2042 5609 1.813513 ACCCTGAACTTGCAATCTCG 58.186 50.000 0.00 0.00 0.00 4.04
2043 5610 1.089920 CCCTGAACTTGCAATCTCGG 58.910 55.000 0.00 4.69 0.00 4.63
2044 5611 1.339055 CCCTGAACTTGCAATCTCGGA 60.339 52.381 15.14 0.00 0.00 4.55
2045 5612 2.426522 CCTGAACTTGCAATCTCGGAA 58.573 47.619 15.14 0.00 0.00 4.30
2046 5613 2.813754 CCTGAACTTGCAATCTCGGAAA 59.186 45.455 15.14 0.00 0.00 3.13
2047 5614 3.441572 CCTGAACTTGCAATCTCGGAAAT 59.558 43.478 15.14 0.00 0.00 2.17
2048 5615 4.437930 CCTGAACTTGCAATCTCGGAAATC 60.438 45.833 15.14 1.56 0.00 2.17
2049 5616 4.071423 TGAACTTGCAATCTCGGAAATCA 58.929 39.130 0.00 0.00 0.00 2.57
2050 5617 4.154737 TGAACTTGCAATCTCGGAAATCAG 59.845 41.667 0.00 0.00 0.00 2.90
2051 5618 2.421424 ACTTGCAATCTCGGAAATCAGC 59.579 45.455 0.00 0.00 0.00 4.26
2052 5619 2.112380 TGCAATCTCGGAAATCAGCA 57.888 45.000 0.00 0.00 0.00 4.41
2053 5620 1.739466 TGCAATCTCGGAAATCAGCAC 59.261 47.619 0.00 0.00 0.00 4.40
2054 5621 1.739466 GCAATCTCGGAAATCAGCACA 59.261 47.619 0.00 0.00 0.00 4.57
2055 5622 2.476854 GCAATCTCGGAAATCAGCACAC 60.477 50.000 0.00 0.00 0.00 3.82
2056 5623 2.029838 ATCTCGGAAATCAGCACACC 57.970 50.000 0.00 0.00 0.00 4.16
2057 5624 0.684535 TCTCGGAAATCAGCACACCA 59.315 50.000 0.00 0.00 0.00 4.17
2058 5625 1.071542 TCTCGGAAATCAGCACACCAA 59.928 47.619 0.00 0.00 0.00 3.67
2059 5626 1.879380 CTCGGAAATCAGCACACCAAA 59.121 47.619 0.00 0.00 0.00 3.28
2060 5627 1.606668 TCGGAAATCAGCACACCAAAC 59.393 47.619 0.00 0.00 0.00 2.93
2061 5628 1.608590 CGGAAATCAGCACACCAAACT 59.391 47.619 0.00 0.00 0.00 2.66
2062 5629 2.034558 CGGAAATCAGCACACCAAACTT 59.965 45.455 0.00 0.00 0.00 2.66
2063 5630 3.490761 CGGAAATCAGCACACCAAACTTT 60.491 43.478 0.00 0.00 0.00 2.66
2064 5631 4.051237 GGAAATCAGCACACCAAACTTTC 58.949 43.478 0.00 0.00 0.00 2.62
2065 5632 4.202151 GGAAATCAGCACACCAAACTTTCT 60.202 41.667 0.00 0.00 0.00 2.52
2066 5633 5.009610 GGAAATCAGCACACCAAACTTTCTA 59.990 40.000 0.00 0.00 0.00 2.10
2067 5634 6.460953 GGAAATCAGCACACCAAACTTTCTAA 60.461 38.462 0.00 0.00 0.00 2.10
2068 5635 6.655078 AATCAGCACACCAAACTTTCTAAT 57.345 33.333 0.00 0.00 0.00 1.73
2069 5636 5.689383 TCAGCACACCAAACTTTCTAATC 57.311 39.130 0.00 0.00 0.00 1.75
2070 5637 4.518970 TCAGCACACCAAACTTTCTAATCC 59.481 41.667 0.00 0.00 0.00 3.01
2071 5638 3.826729 AGCACACCAAACTTTCTAATCCC 59.173 43.478 0.00 0.00 0.00 3.85
2072 5639 3.365969 GCACACCAAACTTTCTAATCCCG 60.366 47.826 0.00 0.00 0.00 5.14
2073 5640 3.190535 CACACCAAACTTTCTAATCCCGG 59.809 47.826 0.00 0.00 0.00 5.73
2074 5641 3.181437 ACACCAAACTTTCTAATCCCGGT 60.181 43.478 0.00 0.00 0.00 5.28
2075 5642 3.439129 CACCAAACTTTCTAATCCCGGTC 59.561 47.826 0.00 0.00 0.00 4.79
2076 5643 3.329814 ACCAAACTTTCTAATCCCGGTCT 59.670 43.478 0.00 0.00 0.00 3.85
2077 5644 4.533311 ACCAAACTTTCTAATCCCGGTCTA 59.467 41.667 0.00 0.00 0.00 2.59
2078 5645 5.191124 ACCAAACTTTCTAATCCCGGTCTAT 59.809 40.000 0.00 0.00 0.00 1.98
2079 5646 6.120220 CCAAACTTTCTAATCCCGGTCTATT 58.880 40.000 0.00 0.00 0.00 1.73
2080 5647 6.602009 CCAAACTTTCTAATCCCGGTCTATTT 59.398 38.462 0.00 0.00 0.00 1.40
2081 5648 7.122204 CCAAACTTTCTAATCCCGGTCTATTTT 59.878 37.037 0.00 0.00 0.00 1.82
2082 5649 9.169592 CAAACTTTCTAATCCCGGTCTATTTTA 57.830 33.333 0.00 0.00 0.00 1.52
2083 5650 9.743581 AAACTTTCTAATCCCGGTCTATTTTAA 57.256 29.630 0.00 0.00 0.00 1.52
2084 5651 9.743581 AACTTTCTAATCCCGGTCTATTTTAAA 57.256 29.630 0.00 1.77 0.00 1.52
2085 5652 9.170734 ACTTTCTAATCCCGGTCTATTTTAAAC 57.829 33.333 0.00 0.00 0.00 2.01
2086 5653 8.510243 TTTCTAATCCCGGTCTATTTTAAACC 57.490 34.615 0.00 0.00 0.00 3.27
2087 5654 7.441903 TCTAATCCCGGTCTATTTTAAACCT 57.558 36.000 0.00 0.00 0.00 3.50
2088 5655 7.864770 TCTAATCCCGGTCTATTTTAAACCTT 58.135 34.615 0.00 0.00 0.00 3.50
2089 5656 6.769134 AATCCCGGTCTATTTTAAACCTTG 57.231 37.500 0.00 0.00 0.00 3.61
2090 5657 5.502089 TCCCGGTCTATTTTAAACCTTGA 57.498 39.130 0.00 0.00 0.00 3.02
2091 5658 5.493809 TCCCGGTCTATTTTAAACCTTGAG 58.506 41.667 0.00 0.00 0.00 3.02
2092 5659 4.095932 CCCGGTCTATTTTAAACCTTGAGC 59.904 45.833 0.00 0.00 0.00 4.26
2093 5660 4.095932 CCGGTCTATTTTAAACCTTGAGCC 59.904 45.833 0.00 0.00 0.00 4.70
2094 5661 4.698304 CGGTCTATTTTAAACCTTGAGCCA 59.302 41.667 0.00 0.00 0.00 4.75
2095 5662 5.163754 CGGTCTATTTTAAACCTTGAGCCAG 60.164 44.000 0.00 0.00 0.00 4.85
2096 5663 5.710567 GGTCTATTTTAAACCTTGAGCCAGT 59.289 40.000 0.00 0.00 0.00 4.00
2097 5664 6.208797 GGTCTATTTTAAACCTTGAGCCAGTT 59.791 38.462 0.00 0.00 0.00 3.16
2098 5665 7.255836 GGTCTATTTTAAACCTTGAGCCAGTTT 60.256 37.037 0.00 0.00 37.47 2.66
2099 5666 8.789762 GTCTATTTTAAACCTTGAGCCAGTTTA 58.210 33.333 0.00 0.00 35.45 2.01
2100 5667 9.010029 TCTATTTTAAACCTTGAGCCAGTTTAG 57.990 33.333 0.00 0.00 37.30 1.85
2101 5668 7.833285 ATTTTAAACCTTGAGCCAGTTTAGA 57.167 32.000 0.00 0.00 37.30 2.10
2102 5669 7.833285 TTTTAAACCTTGAGCCAGTTTAGAT 57.167 32.000 0.00 0.00 37.30 1.98
2103 5670 6.817765 TTAAACCTTGAGCCAGTTTAGATG 57.182 37.500 0.00 0.00 37.30 2.90
2104 5671 3.356529 ACCTTGAGCCAGTTTAGATGG 57.643 47.619 0.00 0.00 41.04 3.51
2105 5672 2.644798 ACCTTGAGCCAGTTTAGATGGT 59.355 45.455 0.00 0.00 40.17 3.55
2106 5673 3.844211 ACCTTGAGCCAGTTTAGATGGTA 59.156 43.478 0.00 0.00 40.17 3.25
2107 5674 4.475016 ACCTTGAGCCAGTTTAGATGGTAT 59.525 41.667 0.00 0.00 40.17 2.73
2108 5675 5.044846 ACCTTGAGCCAGTTTAGATGGTATT 60.045 40.000 0.00 0.00 40.17 1.89
2109 5676 5.529060 CCTTGAGCCAGTTTAGATGGTATTC 59.471 44.000 0.00 0.00 40.17 1.75
2110 5677 4.693283 TGAGCCAGTTTAGATGGTATTCG 58.307 43.478 0.00 0.00 40.17 3.34
2111 5678 3.467803 AGCCAGTTTAGATGGTATTCGC 58.532 45.455 0.00 0.00 40.17 4.70
2112 5679 3.134804 AGCCAGTTTAGATGGTATTCGCT 59.865 43.478 0.00 0.00 40.17 4.93
2113 5680 3.248602 GCCAGTTTAGATGGTATTCGCTG 59.751 47.826 0.00 0.00 40.17 5.18
2114 5681 4.693283 CCAGTTTAGATGGTATTCGCTGA 58.307 43.478 0.00 0.00 32.85 4.26
2115 5682 4.508124 CCAGTTTAGATGGTATTCGCTGAC 59.492 45.833 0.00 0.00 32.85 3.51
2116 5683 4.207224 CAGTTTAGATGGTATTCGCTGACG 59.793 45.833 0.00 0.00 42.01 4.35
2117 5684 4.110482 GTTTAGATGGTATTCGCTGACGT 58.890 43.478 0.00 0.00 41.18 4.34
2118 5685 2.209838 AGATGGTATTCGCTGACGTG 57.790 50.000 0.00 0.00 41.18 4.49
2119 5686 1.202417 AGATGGTATTCGCTGACGTGG 60.202 52.381 0.00 0.00 41.18 4.94
2120 5687 0.810031 ATGGTATTCGCTGACGTGGC 60.810 55.000 0.00 0.00 41.18 5.01
2121 5688 1.447140 GGTATTCGCTGACGTGGCA 60.447 57.895 0.00 0.00 41.18 4.92
2122 5689 1.017177 GGTATTCGCTGACGTGGCAA 61.017 55.000 0.00 0.00 41.18 4.52
2123 5690 0.370273 GTATTCGCTGACGTGGCAAG 59.630 55.000 0.00 0.00 41.18 4.01
2124 5691 0.037697 TATTCGCTGACGTGGCAAGT 60.038 50.000 5.57 5.57 41.18 3.16
2125 5692 1.291877 ATTCGCTGACGTGGCAAGTC 61.292 55.000 23.93 23.93 41.18 3.01
2126 5693 2.636778 TTCGCTGACGTGGCAAGTCA 62.637 55.000 29.50 29.50 45.23 3.41
2127 5694 2.243957 CGCTGACGTGGCAAGTCAA 61.244 57.895 30.59 17.75 46.43 3.18
2128 5695 1.771073 CGCTGACGTGGCAAGTCAAA 61.771 55.000 30.59 14.03 46.43 2.69
2129 5696 0.593128 GCTGACGTGGCAAGTCAAAT 59.407 50.000 30.59 0.00 46.43 2.32
2130 5697 1.001378 GCTGACGTGGCAAGTCAAATT 60.001 47.619 30.59 0.00 46.43 1.82
2131 5698 2.918131 GCTGACGTGGCAAGTCAAATTC 60.918 50.000 30.59 18.49 46.43 2.17
2132 5699 2.549754 CTGACGTGGCAAGTCAAATTCT 59.450 45.455 30.59 0.00 46.43 2.40
2133 5700 2.290367 TGACGTGGCAAGTCAAATTCTG 59.710 45.455 29.51 0.00 44.56 3.02
2134 5701 1.608590 ACGTGGCAAGTCAAATTCTGG 59.391 47.619 0.00 0.00 0.00 3.86
2135 5702 1.068333 CGTGGCAAGTCAAATTCTGGG 60.068 52.381 0.00 0.00 0.00 4.45
2136 5703 0.968405 TGGCAAGTCAAATTCTGGGC 59.032 50.000 0.00 0.00 32.89 5.36
2137 5704 0.109132 GGCAAGTCAAATTCTGGGCG 60.109 55.000 0.00 0.00 0.00 6.13
2138 5705 0.598065 GCAAGTCAAATTCTGGGCGT 59.402 50.000 0.00 0.00 0.00 5.68
2139 5706 1.000274 GCAAGTCAAATTCTGGGCGTT 60.000 47.619 0.00 0.00 0.00 4.84
2140 5707 2.664916 CAAGTCAAATTCTGGGCGTTG 58.335 47.619 0.00 0.00 0.00 4.10
2141 5708 2.270352 AGTCAAATTCTGGGCGTTGA 57.730 45.000 0.00 0.00 0.00 3.18
2142 5709 1.880027 AGTCAAATTCTGGGCGTTGAC 59.120 47.619 7.18 7.18 46.58 3.18
2143 5710 1.068541 GTCAAATTCTGGGCGTTGACC 60.069 52.381 4.43 0.00 42.53 4.02
2144 5711 0.109781 CAAATTCTGGGCGTTGACCG 60.110 55.000 0.00 0.00 40.40 4.79
2145 5712 1.241315 AAATTCTGGGCGTTGACCGG 61.241 55.000 0.00 0.00 38.78 5.28
2154 5721 4.329545 GTTGACCGGCTGGCAGGA 62.330 66.667 17.64 0.00 39.70 3.86
2155 5722 4.329545 TTGACCGGCTGGCAGGAC 62.330 66.667 17.64 12.21 39.70 3.85
2157 5724 4.101448 GACCGGCTGGCAGGACAT 62.101 66.667 17.64 0.00 39.70 3.06
2158 5725 3.628646 GACCGGCTGGCAGGACATT 62.629 63.158 17.64 0.00 39.70 2.71
2159 5726 2.252072 GACCGGCTGGCAGGACATTA 62.252 60.000 17.64 0.00 39.70 1.90
2160 5727 1.077787 CCGGCTGGCAGGACATTAA 60.078 57.895 17.64 0.00 32.98 1.40
2161 5728 1.097547 CCGGCTGGCAGGACATTAAG 61.098 60.000 17.64 0.00 32.98 1.85
2162 5729 0.107703 CGGCTGGCAGGACATTAAGA 60.108 55.000 17.64 0.00 0.00 2.10
2163 5730 1.475751 CGGCTGGCAGGACATTAAGAT 60.476 52.381 17.64 0.00 0.00 2.40
2164 5731 1.952296 GGCTGGCAGGACATTAAGATG 59.048 52.381 17.64 0.00 39.25 2.90
2165 5732 2.421952 GGCTGGCAGGACATTAAGATGA 60.422 50.000 17.64 0.00 36.73 2.92
2166 5733 3.282021 GCTGGCAGGACATTAAGATGAA 58.718 45.455 17.64 0.00 36.73 2.57
2167 5734 3.887716 GCTGGCAGGACATTAAGATGAAT 59.112 43.478 17.64 0.00 36.73 2.57
2168 5735 4.023365 GCTGGCAGGACATTAAGATGAATC 60.023 45.833 17.64 0.00 36.73 2.52
2169 5736 4.129380 TGGCAGGACATTAAGATGAATCG 58.871 43.478 0.00 0.00 36.73 3.34
2170 5737 3.499918 GGCAGGACATTAAGATGAATCGG 59.500 47.826 0.00 0.00 36.73 4.18
2171 5738 3.499918 GCAGGACATTAAGATGAATCGGG 59.500 47.826 0.00 0.00 36.73 5.14
2172 5739 3.499918 CAGGACATTAAGATGAATCGGGC 59.500 47.826 0.00 0.00 36.73 6.13
2173 5740 3.392616 AGGACATTAAGATGAATCGGGCT 59.607 43.478 0.00 0.00 36.73 5.19
2174 5741 3.499918 GGACATTAAGATGAATCGGGCTG 59.500 47.826 0.00 0.00 36.73 4.85
2175 5742 3.480470 ACATTAAGATGAATCGGGCTGG 58.520 45.455 0.00 0.00 36.73 4.85
2176 5743 1.967319 TTAAGATGAATCGGGCTGGC 58.033 50.000 0.00 0.00 0.00 4.85
2177 5744 0.108585 TAAGATGAATCGGGCTGGCC 59.891 55.000 10.75 10.75 0.00 5.36
2187 5754 2.508928 GGCTGGCCCATTAGCGTA 59.491 61.111 0.00 0.00 40.78 4.42
2188 5755 1.153046 GGCTGGCCCATTAGCGTAA 60.153 57.895 0.00 0.00 40.78 3.18
2189 5756 0.537371 GGCTGGCCCATTAGCGTAAT 60.537 55.000 0.00 0.00 40.78 1.89
2190 5757 0.875059 GCTGGCCCATTAGCGTAATC 59.125 55.000 0.00 0.00 0.00 1.75
2191 5758 1.813862 GCTGGCCCATTAGCGTAATCA 60.814 52.381 0.00 0.00 0.00 2.57
2192 5759 1.873591 CTGGCCCATTAGCGTAATCAC 59.126 52.381 0.00 0.00 0.00 3.06
2193 5760 1.488812 TGGCCCATTAGCGTAATCACT 59.511 47.619 0.00 0.00 0.00 3.41
2194 5761 2.143925 GGCCCATTAGCGTAATCACTC 58.856 52.381 0.00 0.00 0.00 3.51
2195 5762 1.792949 GCCCATTAGCGTAATCACTCG 59.207 52.381 0.00 0.00 0.00 4.18
2196 5763 2.802057 GCCCATTAGCGTAATCACTCGT 60.802 50.000 0.00 0.00 0.00 4.18
2197 5764 2.794910 CCCATTAGCGTAATCACTCGTG 59.205 50.000 0.00 0.00 0.00 4.35
2198 5765 2.218759 CCATTAGCGTAATCACTCGTGC 59.781 50.000 0.00 0.00 0.00 5.34
2199 5766 2.933495 TTAGCGTAATCACTCGTGCT 57.067 45.000 0.00 0.00 36.51 4.40
2200 5767 2.188837 TAGCGTAATCACTCGTGCTG 57.811 50.000 0.00 0.00 34.08 4.41
2201 5768 1.078759 AGCGTAATCACTCGTGCTGC 61.079 55.000 0.00 0.00 0.00 5.25
2202 5769 1.078759 GCGTAATCACTCGTGCTGCT 61.079 55.000 0.00 0.00 0.00 4.24
2203 5770 1.797713 GCGTAATCACTCGTGCTGCTA 60.798 52.381 0.00 0.00 0.00 3.49
2204 5771 2.732366 CGTAATCACTCGTGCTGCTAT 58.268 47.619 0.00 0.00 0.00 2.97
2205 5772 2.469147 CGTAATCACTCGTGCTGCTATG 59.531 50.000 0.00 0.00 0.00 2.23
2206 5773 2.680312 AATCACTCGTGCTGCTATGT 57.320 45.000 0.00 0.00 0.00 2.29
2207 5774 2.680312 ATCACTCGTGCTGCTATGTT 57.320 45.000 0.00 0.00 0.00 2.71
2208 5775 2.455674 TCACTCGTGCTGCTATGTTT 57.544 45.000 0.00 0.00 0.00 2.83
2209 5776 2.766313 TCACTCGTGCTGCTATGTTTT 58.234 42.857 0.00 0.00 0.00 2.43
2210 5777 3.138304 TCACTCGTGCTGCTATGTTTTT 58.862 40.909 0.00 0.00 0.00 1.94
2313 5880 9.953565 TTTCTTATATAACTACACAAAGCCAGT 57.046 29.630 0.00 0.00 0.00 4.00
2314 5881 9.953565 TTCTTATATAACTACACAAAGCCAGTT 57.046 29.630 0.00 0.00 35.50 3.16
2315 5882 9.378551 TCTTATATAACTACACAAAGCCAGTTG 57.621 33.333 0.00 0.00 33.47 3.16
2316 5883 9.162764 CTTATATAACTACACAAAGCCAGTTGT 57.837 33.333 0.00 0.00 42.48 3.32
2317 5884 5.941948 ATAACTACACAAAGCCAGTTGTC 57.058 39.130 0.00 0.00 39.73 3.18
2318 5885 3.560636 ACTACACAAAGCCAGTTGTCT 57.439 42.857 0.00 0.00 39.73 3.41
2319 5886 3.886123 ACTACACAAAGCCAGTTGTCTT 58.114 40.909 0.00 0.00 39.73 3.01
2320 5887 4.270008 ACTACACAAAGCCAGTTGTCTTT 58.730 39.130 0.00 0.00 39.73 2.52
2321 5888 4.705023 ACTACACAAAGCCAGTTGTCTTTT 59.295 37.500 0.00 0.00 39.73 2.27
2322 5889 5.883673 ACTACACAAAGCCAGTTGTCTTTTA 59.116 36.000 0.00 0.00 39.73 1.52
2323 5890 5.852282 ACACAAAGCCAGTTGTCTTTTAT 57.148 34.783 0.00 0.00 39.73 1.40
2324 5891 6.952773 ACACAAAGCCAGTTGTCTTTTATA 57.047 33.333 0.00 0.00 39.73 0.98
2325 5892 7.341445 ACACAAAGCCAGTTGTCTTTTATAA 57.659 32.000 0.00 0.00 39.73 0.98
2326 5893 7.425606 ACACAAAGCCAGTTGTCTTTTATAAG 58.574 34.615 0.00 0.00 39.73 1.73
2327 5894 6.863126 CACAAAGCCAGTTGTCTTTTATAAGG 59.137 38.462 0.00 0.00 39.73 2.69
2328 5895 6.775629 ACAAAGCCAGTTGTCTTTTATAAGGA 59.224 34.615 0.00 0.00 37.10 3.36
2329 5896 7.040409 ACAAAGCCAGTTGTCTTTTATAAGGAG 60.040 37.037 0.00 0.00 37.10 3.69
2330 5897 4.944317 AGCCAGTTGTCTTTTATAAGGAGC 59.056 41.667 0.00 0.00 32.02 4.70
2331 5898 4.201822 GCCAGTTGTCTTTTATAAGGAGCG 60.202 45.833 0.00 0.00 32.02 5.03
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
54 56 6.015010 GTGTCTATGAGGGTGCTCATATTACT 60.015 42.308 0.00 0.00 43.04 2.24
156 168 6.310149 ACCTCATCCAGAAAGAAAAACTCAT 58.690 36.000 0.00 0.00 0.00 2.90
170 182 1.107114 ACGCAGAGTACCTCATCCAG 58.893 55.000 0.00 0.00 32.06 3.86
171 183 0.817654 CACGCAGAGTACCTCATCCA 59.182 55.000 0.00 0.00 32.06 3.41
174 186 1.139734 CGCACGCAGAGTACCTCAT 59.860 57.895 0.00 0.00 32.06 2.90
189 201 2.477176 AACAAAACCGCAGCTCGCA 61.477 52.632 8.52 0.00 42.60 5.10
198 210 4.050553 TCTACCGAACTACAACAAAACCG 58.949 43.478 0.00 0.00 0.00 4.44
243 256 4.451096 TCTCGTTGCTCCTTTCACAATAAC 59.549 41.667 0.00 0.00 0.00 1.89
250 263 1.048601 AGGTCTCGTTGCTCCTTTCA 58.951 50.000 0.00 0.00 0.00 2.69
251 264 1.801178 CAAGGTCTCGTTGCTCCTTTC 59.199 52.381 0.00 0.00 38.09 2.62
252 265 1.884235 CAAGGTCTCGTTGCTCCTTT 58.116 50.000 0.00 0.00 38.09 3.11
253 266 3.614399 CAAGGTCTCGTTGCTCCTT 57.386 52.632 0.00 0.00 40.38 3.36
553 566 1.731969 GGTACAGGTGTGACGTCGC 60.732 63.158 22.00 22.00 0.00 5.19
561 574 1.808891 GCACTGAAACGGTACAGGTGT 60.809 52.381 15.85 0.00 38.30 4.16
563 576 0.599204 CGCACTGAAACGGTACAGGT 60.599 55.000 15.85 0.00 38.30 4.00
572 586 1.954146 TGAGCGTCCGCACTGAAAC 60.954 57.895 14.70 0.00 44.88 2.78
575 589 3.601685 TGTGAGCGTCCGCACTGA 61.602 61.111 14.70 0.00 44.88 3.41
583 597 1.080025 GGTACAGGGTGTGAGCGTC 60.080 63.158 0.00 0.00 0.00 5.19
585 599 1.827399 AAGGGTACAGGGTGTGAGCG 61.827 60.000 0.00 0.00 0.00 5.03
587 601 1.697432 TGAAAGGGTACAGGGTGTGAG 59.303 52.381 0.00 0.00 0.00 3.51
591 605 2.227194 GTGTTGAAAGGGTACAGGGTG 58.773 52.381 0.00 0.00 0.00 4.61
594 608 2.536761 TCGTGTTGAAAGGGTACAGG 57.463 50.000 0.00 0.00 0.00 4.00
596 610 2.203401 CGTTCGTGTTGAAAGGGTACA 58.797 47.619 0.00 0.00 38.60 2.90
597 611 1.070376 GCGTTCGTGTTGAAAGGGTAC 60.070 52.381 0.00 0.00 38.60 3.34
598 612 1.202557 AGCGTTCGTGTTGAAAGGGTA 60.203 47.619 0.00 0.00 38.60 3.69
599 613 0.463116 AGCGTTCGTGTTGAAAGGGT 60.463 50.000 0.00 0.00 38.60 4.34
600 614 0.234884 GAGCGTTCGTGTTGAAAGGG 59.765 55.000 0.00 0.00 38.60 3.95
601 615 0.111266 CGAGCGTTCGTGTTGAAAGG 60.111 55.000 13.95 0.00 41.84 3.11
602 616 3.328939 CGAGCGTTCGTGTTGAAAG 57.671 52.632 13.95 0.00 41.84 2.62
612 626 1.077089 GGTAGAAGGTGCGAGCGTTC 61.077 60.000 0.00 0.00 34.55 3.95
613 627 1.080025 GGTAGAAGGTGCGAGCGTT 60.080 57.895 0.00 0.00 0.00 4.84
614 628 2.572284 GGTAGAAGGTGCGAGCGT 59.428 61.111 0.00 0.00 0.00 5.07
615 629 2.579787 CGGTAGAAGGTGCGAGCG 60.580 66.667 0.00 0.00 0.00 5.03
616 630 1.077089 GAACGGTAGAAGGTGCGAGC 61.077 60.000 0.00 0.00 0.00 5.03
617 631 0.242825 TGAACGGTAGAAGGTGCGAG 59.757 55.000 0.00 0.00 0.00 5.03
618 632 0.675083 TTGAACGGTAGAAGGTGCGA 59.325 50.000 0.00 0.00 0.00 5.10
619 633 1.193874 GTTTGAACGGTAGAAGGTGCG 59.806 52.381 0.00 0.00 0.00 5.34
620 634 2.963498 GTTTGAACGGTAGAAGGTGC 57.037 50.000 0.00 0.00 0.00 5.01
632 646 0.315869 CTGCGTGTGACCGTTTGAAC 60.316 55.000 0.00 0.00 0.00 3.18
633 647 0.460459 TCTGCGTGTGACCGTTTGAA 60.460 50.000 0.00 0.00 0.00 2.69
634 648 1.142097 TCTGCGTGTGACCGTTTGA 59.858 52.632 0.00 0.00 0.00 2.69
635 649 1.275657 GTCTGCGTGTGACCGTTTG 59.724 57.895 0.00 0.00 0.00 2.93
636 650 1.885850 GGTCTGCGTGTGACCGTTT 60.886 57.895 7.61 0.00 43.55 3.60
637 651 2.279918 GGTCTGCGTGTGACCGTT 60.280 61.111 7.61 0.00 43.55 4.44
648 662 1.766143 CTATCCGCGCAAAGGTCTGC 61.766 60.000 8.75 0.00 39.04 4.26
649 663 1.154205 CCTATCCGCGCAAAGGTCTG 61.154 60.000 8.75 0.00 0.00 3.51
651 665 0.743345 AACCTATCCGCGCAAAGGTC 60.743 55.000 20.28 0.00 41.51 3.85
661 675 3.245284 CACAATGCGAAGTAACCTATCCG 59.755 47.826 0.00 0.00 0.00 4.18
663 677 3.002348 GCCACAATGCGAAGTAACCTATC 59.998 47.826 0.00 0.00 0.00 2.08
666 680 1.165270 GCCACAATGCGAAGTAACCT 58.835 50.000 0.00 0.00 0.00 3.50
667 681 0.878416 TGCCACAATGCGAAGTAACC 59.122 50.000 0.00 0.00 0.00 2.85
668 682 2.697431 TTGCCACAATGCGAAGTAAC 57.303 45.000 0.00 0.00 0.00 2.50
678 692 2.225496 TGTTCCCCCTAATTGCCACAAT 60.225 45.455 0.00 0.00 0.00 2.71
682 696 1.005450 GACTGTTCCCCCTAATTGCCA 59.995 52.381 0.00 0.00 0.00 4.92
711 725 4.728608 GTCTAATAACAAAAAGGATGCGCG 59.271 41.667 0.00 0.00 0.00 6.86
722 736 9.911138 TGTGACGTATAGTTGTCTAATAACAAA 57.089 29.630 0.00 0.00 40.62 2.83
726 740 7.148255 ACGGTGTGACGTATAGTTGTCTAATAA 60.148 37.037 0.00 0.00 46.58 1.40
727 741 6.316140 ACGGTGTGACGTATAGTTGTCTAATA 59.684 38.462 0.00 0.00 46.58 0.98
728 742 5.124457 ACGGTGTGACGTATAGTTGTCTAAT 59.876 40.000 0.00 0.00 46.58 1.73
729 743 4.455533 ACGGTGTGACGTATAGTTGTCTAA 59.544 41.667 0.00 0.00 46.58 2.10
730 744 4.002982 ACGGTGTGACGTATAGTTGTCTA 58.997 43.478 0.00 0.00 46.58 2.59
731 745 2.816087 ACGGTGTGACGTATAGTTGTCT 59.184 45.455 0.00 0.00 46.58 3.41
732 746 3.207474 ACGGTGTGACGTATAGTTGTC 57.793 47.619 0.00 0.00 46.58 3.18
756 770 1.372623 GTCACCGTTCACCCTCGAC 60.373 63.158 0.00 0.00 0.00 4.20
804 818 4.339809 CGCGGCGTGATGTATGCG 62.340 66.667 16.70 0.00 42.41 4.73
856 870 7.344093 TGGATGTCCAATAATAAAAAGGATGCA 59.656 33.333 0.00 0.00 44.35 3.96
890 904 8.325787 TGTGAGGATAACTTGTAATGTGGTAAT 58.674 33.333 0.00 0.00 0.00 1.89
915 929 2.423538 GTGGATTTCGGTGGGAAGAATG 59.576 50.000 0.00 0.00 35.70 2.67
996 1011 0.324645 GGAAGATGTTGGCCATGGGT 60.325 55.000 15.13 0.00 32.56 4.51
1015 1036 4.744137 CGATGATAGCAGAAGGAAACAGAG 59.256 45.833 0.00 0.00 0.00 3.35
1116 1137 7.084486 GCTTTACTTTGTTTACTTGGATCTGG 58.916 38.462 0.00 0.00 0.00 3.86
1126 1147 7.299787 AGTATAGGCGCTTTACTTTGTTTAC 57.700 36.000 7.64 0.00 26.93 2.01
1140 1161 4.119862 TGATGACAAGAAAGTATAGGCGC 58.880 43.478 0.00 0.00 0.00 6.53
1147 1168 7.378966 AGTCGATTTCTGATGACAAGAAAGTA 58.621 34.615 8.03 0.00 35.41 2.24
1222 1243 2.888212 CCCTCTTGATTTCCCCAAACA 58.112 47.619 0.00 0.00 0.00 2.83
1223 1244 1.550524 GCCCTCTTGATTTCCCCAAAC 59.449 52.381 0.00 0.00 0.00 2.93
1224 1245 1.890573 CGCCCTCTTGATTTCCCCAAA 60.891 52.381 0.00 0.00 0.00 3.28
1336 1357 3.165071 TCAGGTCTGCATAGAGTCACAA 58.835 45.455 0.00 0.00 32.48 3.33
1337 1358 2.807676 TCAGGTCTGCATAGAGTCACA 58.192 47.619 0.00 0.00 32.48 3.58
1338 1359 3.549827 CGATCAGGTCTGCATAGAGTCAC 60.550 52.174 0.00 0.00 32.48 3.67
1339 1360 2.620585 CGATCAGGTCTGCATAGAGTCA 59.379 50.000 0.00 0.00 32.48 3.41
1340 1361 2.881513 TCGATCAGGTCTGCATAGAGTC 59.118 50.000 0.00 0.00 32.48 3.36
1341 1362 2.937519 TCGATCAGGTCTGCATAGAGT 58.062 47.619 0.00 0.00 32.48 3.24
1342 1363 3.998099 TTCGATCAGGTCTGCATAGAG 57.002 47.619 0.00 0.00 32.48 2.43
1343 1364 4.736126 TTTTCGATCAGGTCTGCATAGA 57.264 40.909 0.00 0.00 0.00 1.98
1346 1367 6.949352 ATTATTTTTCGATCAGGTCTGCAT 57.051 33.333 0.00 0.00 0.00 3.96
1351 1372 9.869844 CTCATGTTATTATTTTTCGATCAGGTC 57.130 33.333 0.00 0.00 0.00 3.85
1413 1437 6.536941 GGAAGCGAGTGAAGATAAAAGAAGAT 59.463 38.462 0.00 0.00 0.00 2.40
1430 1454 5.745514 CAATTCAATACATCTGGAAGCGAG 58.254 41.667 0.00 0.00 0.00 5.03
1432 1456 4.285292 GCAATTCAATACATCTGGAAGCG 58.715 43.478 0.00 0.00 0.00 4.68
1445 1469 6.169557 AGTGCATATTCATGGCAATTCAAT 57.830 33.333 0.00 0.00 32.36 2.57
1464 1488 8.270126 TTGTCTATCACATGTGCATGAAGTGC 62.270 42.308 21.38 10.39 44.16 4.40
1465 1489 4.632688 TGTCTATCACATGTGCATGAAGTG 59.367 41.667 21.38 6.98 41.20 3.16
1466 1490 4.835678 TGTCTATCACATGTGCATGAAGT 58.164 39.130 21.38 3.53 41.20 3.01
1467 1491 5.220796 CCTTGTCTATCACATGTGCATGAAG 60.221 44.000 21.38 15.40 41.20 3.02
1468 1492 4.637091 CCTTGTCTATCACATGTGCATGAA 59.363 41.667 21.38 3.61 41.20 2.57
1469 1493 4.080975 TCCTTGTCTATCACATGTGCATGA 60.081 41.667 21.38 14.33 41.20 3.07
1470 1494 4.034858 GTCCTTGTCTATCACATGTGCATG 59.965 45.833 21.38 13.54 44.15 4.06
1471 1495 4.194640 GTCCTTGTCTATCACATGTGCAT 58.805 43.478 21.38 16.42 33.90 3.96
1476 1500 4.936891 TGATCGTCCTTGTCTATCACATG 58.063 43.478 0.00 0.00 33.90 3.21
1479 1503 4.038042 TCCATGATCGTCCTTGTCTATCAC 59.962 45.833 0.00 0.00 29.93 3.06
1492 5059 3.190079 CAACGTCAAGATCCATGATCGT 58.810 45.455 14.79 14.79 43.17 3.73
1525 5092 4.425577 TCGAACGGAGGTAGTACTTTTC 57.574 45.455 0.00 0.00 0.00 2.29
1540 5107 4.997107 TCAACGACAACTAATTTCGAACG 58.003 39.130 0.00 0.00 36.58 3.95
1543 5110 6.203145 TCCATTTCAACGACAACTAATTTCGA 59.797 34.615 3.62 0.00 36.58 3.71
1588 5155 6.701340 TCGCTTAAATGGATGTATCTAGCAT 58.299 36.000 0.00 0.00 0.00 3.79
1607 5174 8.293699 AGGAGTTTTGGAATTATTTATCGCTT 57.706 30.769 0.00 0.00 0.00 4.68
1616 5183 9.238368 TCGATTTTGTAGGAGTTTTGGAATTAT 57.762 29.630 0.00 0.00 0.00 1.28
1624 5191 7.611213 ATCGATTCGATTTTGTAGGAGTTTT 57.389 32.000 15.60 0.00 44.59 2.43
1654 5221 2.880890 GGTTCATCAGTTGCAGAGTTGT 59.119 45.455 0.00 0.00 0.00 3.32
1703 5270 8.792633 CCAGTTCTTGTCAATTTTACATAGGAA 58.207 33.333 0.00 0.00 0.00 3.36
1710 5277 6.072673 ACGGATCCAGTTCTTGTCAATTTTAC 60.073 38.462 13.41 0.00 0.00 2.01
1719 5286 3.771577 AGAAACGGATCCAGTTCTTGT 57.228 42.857 17.43 6.22 0.00 3.16
1723 5290 3.447944 AGGACTAGAAACGGATCCAGTTC 59.552 47.826 18.16 16.17 31.41 3.01
1726 5293 4.036971 CACTAGGACTAGAAACGGATCCAG 59.963 50.000 13.41 7.30 36.97 3.86
1743 5310 3.431766 GGTACCACAATACAGGCACTAGG 60.432 52.174 7.15 0.00 36.02 3.02
1748 5315 0.978151 ACGGTACCACAATACAGGCA 59.022 50.000 13.54 0.00 0.00 4.75
1755 5322 7.707893 GTCACATAATAAGTACGGTACCACAAT 59.292 37.037 13.54 0.00 0.00 2.71
1759 5326 8.518430 TTAGTCACATAATAAGTACGGTACCA 57.482 34.615 13.54 3.85 0.00 3.25
1760 5327 9.237846 GTTTAGTCACATAATAAGTACGGTACC 57.762 37.037 14.41 0.16 0.00 3.34
1771 5338 9.899661 AGCACATAAAGGTTTAGTCACATAATA 57.100 29.630 0.00 0.00 0.00 0.98
1772 5339 8.807948 AGCACATAAAGGTTTAGTCACATAAT 57.192 30.769 0.00 0.00 0.00 1.28
1773 5340 8.630054 AAGCACATAAAGGTTTAGTCACATAA 57.370 30.769 0.00 0.00 0.00 1.90
1774 5341 7.880713 TGAAGCACATAAAGGTTTAGTCACATA 59.119 33.333 0.00 0.00 0.00 2.29
1775 5342 6.714810 TGAAGCACATAAAGGTTTAGTCACAT 59.285 34.615 0.00 0.00 0.00 3.21
1776 5343 6.058833 TGAAGCACATAAAGGTTTAGTCACA 58.941 36.000 0.00 0.00 0.00 3.58
1777 5344 6.554334 TGAAGCACATAAAGGTTTAGTCAC 57.446 37.500 0.00 0.00 0.00 3.67
1778 5345 6.939730 TGATGAAGCACATAAAGGTTTAGTCA 59.060 34.615 0.00 0.00 39.56 3.41
1779 5346 7.377766 TGATGAAGCACATAAAGGTTTAGTC 57.622 36.000 0.00 0.00 39.56 2.59
1893 5460 2.569853 TCGTCTTGGCCTTATTTCAGGA 59.430 45.455 3.32 0.00 35.71 3.86
1989 5556 9.933723 AGCTTTCGTCTATAAGTTTAAGGTTTA 57.066 29.630 0.00 0.00 0.00 2.01
1990 5557 8.843885 AGCTTTCGTCTATAAGTTTAAGGTTT 57.156 30.769 0.00 0.00 0.00 3.27
1991 5558 9.933723 TTAGCTTTCGTCTATAAGTTTAAGGTT 57.066 29.630 0.00 0.00 0.00 3.50
1992 5559 9.933723 TTTAGCTTTCGTCTATAAGTTTAAGGT 57.066 29.630 0.00 0.00 0.00 3.50
1999 5566 8.880750 GGTTTGATTTAGCTTTCGTCTATAAGT 58.119 33.333 0.00 0.00 0.00 2.24
2000 5567 8.336080 GGGTTTGATTTAGCTTTCGTCTATAAG 58.664 37.037 0.00 0.00 0.00 1.73
2001 5568 8.044908 AGGGTTTGATTTAGCTTTCGTCTATAA 58.955 33.333 0.00 0.00 0.00 0.98
2002 5569 7.494625 CAGGGTTTGATTTAGCTTTCGTCTATA 59.505 37.037 0.00 0.00 0.00 1.31
2003 5570 6.316390 CAGGGTTTGATTTAGCTTTCGTCTAT 59.684 38.462 0.00 0.00 0.00 1.98
2004 5571 5.642063 CAGGGTTTGATTTAGCTTTCGTCTA 59.358 40.000 0.00 0.00 0.00 2.59
2005 5572 4.455877 CAGGGTTTGATTTAGCTTTCGTCT 59.544 41.667 0.00 0.00 0.00 4.18
2006 5573 4.454504 TCAGGGTTTGATTTAGCTTTCGTC 59.545 41.667 0.00 0.00 0.00 4.20
2007 5574 4.394729 TCAGGGTTTGATTTAGCTTTCGT 58.605 39.130 0.00 0.00 0.00 3.85
2008 5575 5.048713 AGTTCAGGGTTTGATTTAGCTTTCG 60.049 40.000 0.00 0.00 35.27 3.46
2009 5576 6.332735 AGTTCAGGGTTTGATTTAGCTTTC 57.667 37.500 0.00 0.00 35.27 2.62
2010 5577 6.515832 CAAGTTCAGGGTTTGATTTAGCTTT 58.484 36.000 0.00 0.00 35.27 3.51
2011 5578 5.509670 GCAAGTTCAGGGTTTGATTTAGCTT 60.510 40.000 0.00 0.00 35.27 3.74
2012 5579 4.021981 GCAAGTTCAGGGTTTGATTTAGCT 60.022 41.667 0.00 0.00 35.27 3.32
2013 5580 4.237724 GCAAGTTCAGGGTTTGATTTAGC 58.762 43.478 0.00 0.00 35.27 3.09
2014 5581 5.452078 TGCAAGTTCAGGGTTTGATTTAG 57.548 39.130 0.00 0.00 35.27 1.85
2015 5582 5.860941 TTGCAAGTTCAGGGTTTGATTTA 57.139 34.783 0.00 0.00 35.27 1.40
2016 5583 4.751767 TTGCAAGTTCAGGGTTTGATTT 57.248 36.364 0.00 0.00 35.27 2.17
2017 5584 4.590222 AGATTGCAAGTTCAGGGTTTGATT 59.410 37.500 4.94 0.00 35.27 2.57
2018 5585 4.154942 AGATTGCAAGTTCAGGGTTTGAT 58.845 39.130 4.94 0.00 35.27 2.57
2019 5586 3.565307 AGATTGCAAGTTCAGGGTTTGA 58.435 40.909 4.94 0.00 0.00 2.69
2020 5587 3.610114 CGAGATTGCAAGTTCAGGGTTTG 60.610 47.826 4.94 0.00 0.00 2.93
2021 5588 2.554032 CGAGATTGCAAGTTCAGGGTTT 59.446 45.455 4.94 0.00 0.00 3.27
2022 5589 2.154462 CGAGATTGCAAGTTCAGGGTT 58.846 47.619 4.94 0.00 0.00 4.11
2023 5590 1.611673 CCGAGATTGCAAGTTCAGGGT 60.612 52.381 4.94 0.00 0.00 4.34
2024 5591 1.089920 CCGAGATTGCAAGTTCAGGG 58.910 55.000 4.94 0.39 0.00 4.45
2025 5592 2.099141 TCCGAGATTGCAAGTTCAGG 57.901 50.000 4.94 10.44 0.00 3.86
2026 5593 4.154737 TGATTTCCGAGATTGCAAGTTCAG 59.845 41.667 4.94 0.00 0.00 3.02
2027 5594 4.071423 TGATTTCCGAGATTGCAAGTTCA 58.929 39.130 4.94 0.00 0.00 3.18
2028 5595 4.656041 CTGATTTCCGAGATTGCAAGTTC 58.344 43.478 4.94 4.08 0.00 3.01
2029 5596 3.119708 GCTGATTTCCGAGATTGCAAGTT 60.120 43.478 4.94 0.00 0.00 2.66
2030 5597 2.421424 GCTGATTTCCGAGATTGCAAGT 59.579 45.455 4.94 0.00 0.00 3.16
2031 5598 2.421073 TGCTGATTTCCGAGATTGCAAG 59.579 45.455 4.94 0.00 0.00 4.01
2032 5599 2.162208 GTGCTGATTTCCGAGATTGCAA 59.838 45.455 0.00 0.00 0.00 4.08
2033 5600 1.739466 GTGCTGATTTCCGAGATTGCA 59.261 47.619 0.00 0.00 0.00 4.08
2034 5601 1.739466 TGTGCTGATTTCCGAGATTGC 59.261 47.619 0.00 0.00 0.00 3.56
2035 5602 2.096496 GGTGTGCTGATTTCCGAGATTG 59.904 50.000 0.00 0.00 0.00 2.67
2036 5603 2.290260 TGGTGTGCTGATTTCCGAGATT 60.290 45.455 0.00 0.00 0.00 2.40
2037 5604 1.278985 TGGTGTGCTGATTTCCGAGAT 59.721 47.619 0.00 0.00 0.00 2.75
2038 5605 0.684535 TGGTGTGCTGATTTCCGAGA 59.315 50.000 0.00 0.00 0.00 4.04
2039 5606 1.522668 TTGGTGTGCTGATTTCCGAG 58.477 50.000 0.00 0.00 0.00 4.63
2040 5607 1.606668 GTTTGGTGTGCTGATTTCCGA 59.393 47.619 0.00 0.00 0.00 4.55
2041 5608 1.608590 AGTTTGGTGTGCTGATTTCCG 59.391 47.619 0.00 0.00 0.00 4.30
2042 5609 3.733443 AAGTTTGGTGTGCTGATTTCC 57.267 42.857 0.00 0.00 0.00 3.13
2043 5610 4.936891 AGAAAGTTTGGTGTGCTGATTTC 58.063 39.130 0.00 0.00 0.00 2.17
2044 5611 6.463995 TTAGAAAGTTTGGTGTGCTGATTT 57.536 33.333 0.00 0.00 0.00 2.17
2045 5612 6.294731 GGATTAGAAAGTTTGGTGTGCTGATT 60.295 38.462 0.00 0.00 0.00 2.57
2046 5613 5.183904 GGATTAGAAAGTTTGGTGTGCTGAT 59.816 40.000 0.00 0.00 0.00 2.90
2047 5614 4.518970 GGATTAGAAAGTTTGGTGTGCTGA 59.481 41.667 0.00 0.00 0.00 4.26
2048 5615 4.321230 GGGATTAGAAAGTTTGGTGTGCTG 60.321 45.833 0.00 0.00 0.00 4.41
2049 5616 3.826729 GGGATTAGAAAGTTTGGTGTGCT 59.173 43.478 0.00 0.00 0.00 4.40
2050 5617 3.365969 CGGGATTAGAAAGTTTGGTGTGC 60.366 47.826 0.00 0.00 0.00 4.57
2051 5618 3.190535 CCGGGATTAGAAAGTTTGGTGTG 59.809 47.826 0.00 0.00 0.00 3.82
2052 5619 3.181437 ACCGGGATTAGAAAGTTTGGTGT 60.181 43.478 6.32 0.00 0.00 4.16
2053 5620 3.418047 ACCGGGATTAGAAAGTTTGGTG 58.582 45.455 6.32 0.00 0.00 4.17
2054 5621 3.329814 AGACCGGGATTAGAAAGTTTGGT 59.670 43.478 6.32 0.00 0.00 3.67
2055 5622 3.951663 AGACCGGGATTAGAAAGTTTGG 58.048 45.455 6.32 0.00 0.00 3.28
2056 5623 7.625828 AAATAGACCGGGATTAGAAAGTTTG 57.374 36.000 6.32 0.00 0.00 2.93
2057 5624 9.743581 TTAAAATAGACCGGGATTAGAAAGTTT 57.256 29.630 6.32 0.00 0.00 2.66
2058 5625 9.743581 TTTAAAATAGACCGGGATTAGAAAGTT 57.256 29.630 6.32 0.00 0.00 2.66
2059 5626 9.170734 GTTTAAAATAGACCGGGATTAGAAAGT 57.829 33.333 6.32 0.00 0.00 2.66
2060 5627 8.618677 GGTTTAAAATAGACCGGGATTAGAAAG 58.381 37.037 6.32 0.00 0.00 2.62
2061 5628 8.330993 AGGTTTAAAATAGACCGGGATTAGAAA 58.669 33.333 6.32 4.18 38.48 2.52
2062 5629 7.864770 AGGTTTAAAATAGACCGGGATTAGAA 58.135 34.615 6.32 0.00 38.48 2.10
2063 5630 7.441903 AGGTTTAAAATAGACCGGGATTAGA 57.558 36.000 6.32 0.00 38.48 2.10
2064 5631 7.771826 TCAAGGTTTAAAATAGACCGGGATTAG 59.228 37.037 6.32 0.00 38.48 1.73
2065 5632 7.631933 TCAAGGTTTAAAATAGACCGGGATTA 58.368 34.615 6.32 0.00 38.48 1.75
2066 5633 6.486941 TCAAGGTTTAAAATAGACCGGGATT 58.513 36.000 6.32 0.00 38.48 3.01
2067 5634 6.069705 TCAAGGTTTAAAATAGACCGGGAT 57.930 37.500 6.32 0.00 38.48 3.85
2068 5635 5.493809 CTCAAGGTTTAAAATAGACCGGGA 58.506 41.667 6.32 0.00 38.48 5.14
2069 5636 4.095932 GCTCAAGGTTTAAAATAGACCGGG 59.904 45.833 6.32 0.00 38.48 5.73
2070 5637 4.095932 GGCTCAAGGTTTAAAATAGACCGG 59.904 45.833 0.00 0.00 38.48 5.28
2071 5638 4.698304 TGGCTCAAGGTTTAAAATAGACCG 59.302 41.667 0.00 0.00 38.48 4.79
2072 5639 5.710567 ACTGGCTCAAGGTTTAAAATAGACC 59.289 40.000 0.00 0.00 0.00 3.85
2073 5640 6.819397 ACTGGCTCAAGGTTTAAAATAGAC 57.181 37.500 0.00 0.00 0.00 2.59
2074 5641 7.833285 AAACTGGCTCAAGGTTTAAAATAGA 57.167 32.000 0.00 0.00 32.39 1.98
2075 5642 9.010029 TCTAAACTGGCTCAAGGTTTAAAATAG 57.990 33.333 0.00 0.00 35.78 1.73
2076 5643 8.927675 TCTAAACTGGCTCAAGGTTTAAAATA 57.072 30.769 0.00 0.00 35.78 1.40
2077 5644 7.833285 TCTAAACTGGCTCAAGGTTTAAAAT 57.167 32.000 0.00 0.00 35.78 1.82
2078 5645 7.255801 CCATCTAAACTGGCTCAAGGTTTAAAA 60.256 37.037 0.00 0.00 35.78 1.52
2079 5646 6.208599 CCATCTAAACTGGCTCAAGGTTTAAA 59.791 38.462 0.00 0.00 35.78 1.52
2080 5647 5.710099 CCATCTAAACTGGCTCAAGGTTTAA 59.290 40.000 0.00 0.00 35.78 1.52
2081 5648 5.222048 ACCATCTAAACTGGCTCAAGGTTTA 60.222 40.000 0.00 0.00 37.27 2.01
2082 5649 4.082125 CCATCTAAACTGGCTCAAGGTTT 58.918 43.478 0.00 0.00 37.08 3.27
2083 5650 3.074538 ACCATCTAAACTGGCTCAAGGTT 59.925 43.478 0.00 0.00 37.27 3.50
2084 5651 2.644798 ACCATCTAAACTGGCTCAAGGT 59.355 45.455 0.00 0.00 37.27 3.50
2085 5652 3.356529 ACCATCTAAACTGGCTCAAGG 57.643 47.619 0.00 0.00 37.27 3.61
2086 5653 5.235186 CGAATACCATCTAAACTGGCTCAAG 59.765 44.000 0.00 0.00 37.27 3.02
2087 5654 5.116180 CGAATACCATCTAAACTGGCTCAA 58.884 41.667 0.00 0.00 37.27 3.02
2088 5655 4.693283 CGAATACCATCTAAACTGGCTCA 58.307 43.478 0.00 0.00 37.27 4.26
2089 5656 3.495001 GCGAATACCATCTAAACTGGCTC 59.505 47.826 0.00 0.00 37.27 4.70
2090 5657 3.134804 AGCGAATACCATCTAAACTGGCT 59.865 43.478 0.00 0.00 37.27 4.75
2091 5658 3.248602 CAGCGAATACCATCTAAACTGGC 59.751 47.826 0.00 0.00 37.27 4.85
2092 5659 4.508124 GTCAGCGAATACCATCTAAACTGG 59.492 45.833 0.00 0.00 39.80 4.00
2093 5660 4.207224 CGTCAGCGAATACCATCTAAACTG 59.793 45.833 0.00 0.00 41.33 3.16
2094 5661 4.142227 ACGTCAGCGAATACCATCTAAACT 60.142 41.667 0.00 0.00 42.00 2.66
2095 5662 4.026804 CACGTCAGCGAATACCATCTAAAC 60.027 45.833 0.00 0.00 42.00 2.01
2096 5663 4.109766 CACGTCAGCGAATACCATCTAAA 58.890 43.478 0.00 0.00 42.00 1.85
2097 5664 3.490249 CCACGTCAGCGAATACCATCTAA 60.490 47.826 0.00 0.00 42.00 2.10
2098 5665 2.034179 CCACGTCAGCGAATACCATCTA 59.966 50.000 0.00 0.00 42.00 1.98
2099 5666 1.202417 CCACGTCAGCGAATACCATCT 60.202 52.381 0.00 0.00 42.00 2.90
2100 5667 1.209128 CCACGTCAGCGAATACCATC 58.791 55.000 0.00 0.00 42.00 3.51
2101 5668 0.810031 GCCACGTCAGCGAATACCAT 60.810 55.000 0.00 0.00 42.00 3.55
2102 5669 1.447140 GCCACGTCAGCGAATACCA 60.447 57.895 0.00 0.00 42.00 3.25
2103 5670 1.017177 TTGCCACGTCAGCGAATACC 61.017 55.000 2.87 0.00 42.00 2.73
2104 5671 0.370273 CTTGCCACGTCAGCGAATAC 59.630 55.000 2.87 0.00 42.00 1.89
2105 5672 0.037697 ACTTGCCACGTCAGCGAATA 60.038 50.000 2.87 0.00 42.00 1.75
2106 5673 1.291877 GACTTGCCACGTCAGCGAAT 61.292 55.000 0.00 0.00 42.00 3.34
2107 5674 1.954146 GACTTGCCACGTCAGCGAA 60.954 57.895 0.00 0.00 42.00 4.70
2108 5675 2.355837 GACTTGCCACGTCAGCGA 60.356 61.111 0.00 0.18 42.00 4.93
2109 5676 1.771073 TTTGACTTGCCACGTCAGCG 61.771 55.000 4.13 0.00 41.85 5.18
2110 5677 0.593128 ATTTGACTTGCCACGTCAGC 59.407 50.000 4.13 0.04 41.85 4.26
2111 5678 2.549754 AGAATTTGACTTGCCACGTCAG 59.450 45.455 4.13 0.00 41.85 3.51
2112 5679 2.290367 CAGAATTTGACTTGCCACGTCA 59.710 45.455 0.00 0.00 39.45 4.35
2113 5680 2.350772 CCAGAATTTGACTTGCCACGTC 60.351 50.000 0.00 0.00 0.00 4.34
2114 5681 1.608590 CCAGAATTTGACTTGCCACGT 59.391 47.619 0.00 0.00 0.00 4.49
2115 5682 1.068333 CCCAGAATTTGACTTGCCACG 60.068 52.381 0.00 0.00 0.00 4.94
2116 5683 1.337167 GCCCAGAATTTGACTTGCCAC 60.337 52.381 0.00 0.00 0.00 5.01
2117 5684 0.968405 GCCCAGAATTTGACTTGCCA 59.032 50.000 0.00 0.00 0.00 4.92
2118 5685 0.109132 CGCCCAGAATTTGACTTGCC 60.109 55.000 0.00 0.00 0.00 4.52
2119 5686 0.598065 ACGCCCAGAATTTGACTTGC 59.402 50.000 0.00 0.00 0.00 4.01
2120 5687 2.293122 TCAACGCCCAGAATTTGACTTG 59.707 45.455 0.00 0.00 0.00 3.16
2121 5688 2.293399 GTCAACGCCCAGAATTTGACTT 59.707 45.455 6.15 0.00 42.96 3.01
2122 5689 1.880027 GTCAACGCCCAGAATTTGACT 59.120 47.619 6.15 0.00 42.96 3.41
2123 5690 1.068541 GGTCAACGCCCAGAATTTGAC 60.069 52.381 5.00 5.00 44.69 3.18
2124 5691 1.243902 GGTCAACGCCCAGAATTTGA 58.756 50.000 0.00 0.00 0.00 2.69
2125 5692 0.109781 CGGTCAACGCCCAGAATTTG 60.110 55.000 0.00 0.00 34.82 2.32
2126 5693 1.241315 CCGGTCAACGCCCAGAATTT 61.241 55.000 0.00 0.00 42.52 1.82
2127 5694 1.674322 CCGGTCAACGCCCAGAATT 60.674 57.895 0.00 0.00 42.52 2.17
2128 5695 2.046314 CCGGTCAACGCCCAGAAT 60.046 61.111 0.00 0.00 42.52 2.40
2137 5704 4.329545 TCCTGCCAGCCGGTCAAC 62.330 66.667 1.90 0.00 33.28 3.18
2138 5705 4.329545 GTCCTGCCAGCCGGTCAA 62.330 66.667 1.90 0.00 33.28 3.18
2140 5707 2.252072 TAATGTCCTGCCAGCCGGTC 62.252 60.000 1.90 0.00 33.28 4.79
2141 5708 1.847798 TTAATGTCCTGCCAGCCGGT 61.848 55.000 1.90 0.00 33.28 5.28
2142 5709 1.077787 TTAATGTCCTGCCAGCCGG 60.078 57.895 0.00 0.00 0.00 6.13
2143 5710 0.107703 TCTTAATGTCCTGCCAGCCG 60.108 55.000 0.00 0.00 0.00 5.52
2144 5711 1.952296 CATCTTAATGTCCTGCCAGCC 59.048 52.381 0.00 0.00 0.00 4.85
2145 5712 2.923121 TCATCTTAATGTCCTGCCAGC 58.077 47.619 0.00 0.00 34.32 4.85
2146 5713 4.212847 CGATTCATCTTAATGTCCTGCCAG 59.787 45.833 0.00 0.00 34.32 4.85
2147 5714 4.129380 CGATTCATCTTAATGTCCTGCCA 58.871 43.478 0.00 0.00 34.32 4.92
2148 5715 3.499918 CCGATTCATCTTAATGTCCTGCC 59.500 47.826 0.00 0.00 34.32 4.85
2149 5716 3.499918 CCCGATTCATCTTAATGTCCTGC 59.500 47.826 0.00 0.00 34.32 4.85
2150 5717 3.499918 GCCCGATTCATCTTAATGTCCTG 59.500 47.826 0.00 0.00 34.32 3.86
2151 5718 3.392616 AGCCCGATTCATCTTAATGTCCT 59.607 43.478 0.00 0.00 34.32 3.85
2152 5719 3.499918 CAGCCCGATTCATCTTAATGTCC 59.500 47.826 0.00 0.00 34.32 4.02
2153 5720 3.499918 CCAGCCCGATTCATCTTAATGTC 59.500 47.826 0.00 0.00 34.32 3.06
2154 5721 3.480470 CCAGCCCGATTCATCTTAATGT 58.520 45.455 0.00 0.00 34.32 2.71
2155 5722 2.227388 GCCAGCCCGATTCATCTTAATG 59.773 50.000 0.00 0.00 0.00 1.90
2156 5723 2.508526 GCCAGCCCGATTCATCTTAAT 58.491 47.619 0.00 0.00 0.00 1.40
2157 5724 1.476833 GGCCAGCCCGATTCATCTTAA 60.477 52.381 0.00 0.00 0.00 1.85
2158 5725 0.108585 GGCCAGCCCGATTCATCTTA 59.891 55.000 0.00 0.00 0.00 2.10
2159 5726 1.152881 GGCCAGCCCGATTCATCTT 60.153 57.895 0.00 0.00 0.00 2.40
2160 5727 2.512896 GGCCAGCCCGATTCATCT 59.487 61.111 0.00 0.00 0.00 2.90
2170 5737 0.537371 ATTACGCTAATGGGCCAGCC 60.537 55.000 13.78 0.00 34.15 4.85
2171 5738 0.875059 GATTACGCTAATGGGCCAGC 59.125 55.000 13.78 9.51 0.00 4.85
2172 5739 1.873591 GTGATTACGCTAATGGGCCAG 59.126 52.381 13.78 0.00 0.00 4.85
2173 5740 1.488812 AGTGATTACGCTAATGGGCCA 59.511 47.619 9.61 9.61 34.91 5.36
2174 5741 2.143925 GAGTGATTACGCTAATGGGCC 58.856 52.381 0.00 0.00 36.96 5.80
2175 5742 1.792949 CGAGTGATTACGCTAATGGGC 59.207 52.381 0.00 0.00 36.96 5.36
2176 5743 2.794910 CACGAGTGATTACGCTAATGGG 59.205 50.000 0.00 0.00 36.96 4.00
2177 5744 2.218759 GCACGAGTGATTACGCTAATGG 59.781 50.000 7.50 0.00 36.96 3.16
2178 5745 3.060940 CAGCACGAGTGATTACGCTAATG 60.061 47.826 7.50 0.00 36.96 1.90
2179 5746 3.116300 CAGCACGAGTGATTACGCTAAT 58.884 45.455 7.50 0.00 36.96 1.73
2180 5747 2.526077 CAGCACGAGTGATTACGCTAA 58.474 47.619 7.50 0.00 36.96 3.09
2181 5748 1.797713 GCAGCACGAGTGATTACGCTA 60.798 52.381 7.50 0.00 36.96 4.26
2182 5749 1.078759 GCAGCACGAGTGATTACGCT 61.079 55.000 7.50 0.00 39.75 5.07
2183 5750 1.078759 AGCAGCACGAGTGATTACGC 61.079 55.000 7.50 0.86 0.00 4.42
2184 5751 2.188837 TAGCAGCACGAGTGATTACG 57.811 50.000 7.50 0.00 0.00 3.18
2185 5752 3.448686 ACATAGCAGCACGAGTGATTAC 58.551 45.455 7.50 0.00 0.00 1.89
2186 5753 3.801114 ACATAGCAGCACGAGTGATTA 57.199 42.857 7.50 0.00 0.00 1.75
2187 5754 2.680312 ACATAGCAGCACGAGTGATT 57.320 45.000 7.50 0.00 0.00 2.57
2188 5755 2.680312 AACATAGCAGCACGAGTGAT 57.320 45.000 7.50 0.00 0.00 3.06
2189 5756 2.455674 AAACATAGCAGCACGAGTGA 57.544 45.000 7.50 0.00 0.00 3.41
2190 5757 3.542712 AAAAACATAGCAGCACGAGTG 57.457 42.857 0.00 0.00 0.00 3.51
2287 5854 9.953565 ACTGGCTTTGTGTAGTTATATAAGAAA 57.046 29.630 0.00 0.00 0.00 2.52
2288 5855 9.953565 AACTGGCTTTGTGTAGTTATATAAGAA 57.046 29.630 0.00 0.00 32.05 2.52
2289 5856 9.378551 CAACTGGCTTTGTGTAGTTATATAAGA 57.621 33.333 0.00 0.00 32.53 2.10
2290 5857 9.162764 ACAACTGGCTTTGTGTAGTTATATAAG 57.837 33.333 4.54 0.00 38.31 1.73
2291 5858 9.158233 GACAACTGGCTTTGTGTAGTTATATAA 57.842 33.333 9.39 0.00 39.88 0.98
2292 5859 8.537016 AGACAACTGGCTTTGTGTAGTTATATA 58.463 33.333 9.39 0.00 39.88 0.86
2293 5860 7.394816 AGACAACTGGCTTTGTGTAGTTATAT 58.605 34.615 9.39 0.00 39.88 0.86
2294 5861 6.765403 AGACAACTGGCTTTGTGTAGTTATA 58.235 36.000 9.39 0.00 39.88 0.98
2295 5862 5.621193 AGACAACTGGCTTTGTGTAGTTAT 58.379 37.500 9.39 0.00 39.88 1.89
2296 5863 5.031066 AGACAACTGGCTTTGTGTAGTTA 57.969 39.130 9.39 0.00 39.88 2.24
2297 5864 3.886123 AGACAACTGGCTTTGTGTAGTT 58.114 40.909 9.39 0.00 39.88 2.24
2298 5865 3.560636 AGACAACTGGCTTTGTGTAGT 57.439 42.857 9.39 0.00 39.88 2.73
2307 5874 4.944317 GCTCCTTATAAAAGACAACTGGCT 59.056 41.667 0.00 0.00 34.37 4.75
2308 5875 4.201822 CGCTCCTTATAAAAGACAACTGGC 60.202 45.833 0.00 0.00 34.37 4.85
2309 5876 5.470845 CGCTCCTTATAAAAGACAACTGG 57.529 43.478 0.00 0.00 34.37 4.00


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.