Multiple sequence alignment - TraesCS2B01G429400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G429400 chr2B 100.000 4656 0 0 1 4656 616930101 616934756 0.000000e+00 8599.0
1 TraesCS2B01G429400 chr2B 78.544 261 47 7 298 555 704581995 704582249 3.730000e-36 163.0
2 TraesCS2B01G429400 chr2B 86.047 129 17 1 557 684 190023047 190022919 2.260000e-28 137.0
3 TraesCS2B01G429400 chr2B 90.625 64 6 0 3788 3851 612461640 612461577 8.300000e-13 86.1
4 TraesCS2B01G429400 chr2D 92.898 2253 101 20 744 2961 523024902 523027130 0.000000e+00 3219.0
5 TraesCS2B01G429400 chr2D 92.061 718 37 14 3084 3789 523027128 523027837 0.000000e+00 992.0
6 TraesCS2B01G429400 chr2D 87.155 833 49 19 3869 4656 523027836 523028655 0.000000e+00 893.0
7 TraesCS2B01G429400 chr2D 90.323 682 51 7 1 672 523024224 523024900 0.000000e+00 880.0
8 TraesCS2B01G429400 chr2D 74.336 452 89 19 115 555 522130884 522131319 2.880000e-37 167.0
9 TraesCS2B01G429400 chr2D 92.381 105 7 1 581 684 14772026 14772130 1.040000e-31 148.0
10 TraesCS2B01G429400 chr2D 90.265 113 10 1 573 684 79056179 79056291 3.750000e-31 147.0
11 TraesCS2B01G429400 chr2D 83.562 146 22 1 1810 1955 43249904 43250047 8.130000e-28 135.0
12 TraesCS2B01G429400 chr2A 91.836 2217 108 26 785 2961 668239167 668241350 0.000000e+00 3024.0
13 TraesCS2B01G429400 chr2A 91.492 717 43 12 3084 3789 668241348 668242057 0.000000e+00 970.0
14 TraesCS2B01G429400 chr2A 91.162 611 30 9 4061 4656 668242307 668242908 0.000000e+00 808.0
15 TraesCS2B01G429400 chr2A 95.000 140 6 1 2958 3097 40541996 40542134 7.840000e-53 219.0
16 TraesCS2B01G429400 chr2A 88.983 118 12 1 568 684 141506463 141506346 1.350000e-30 145.0
17 TraesCS2B01G429400 chr3D 95.804 143 4 2 2954 3096 210622417 210622557 3.620000e-56 230.0
18 TraesCS2B01G429400 chr3D 74.229 454 89 20 114 555 603647425 603646988 1.040000e-36 165.0
19 TraesCS2B01G429400 chr1D 96.992 133 4 0 2957 3089 194139768 194139900 1.690000e-54 224.0
20 TraesCS2B01G429400 chr1D 96.324 136 4 1 2953 3088 418260819 418260685 6.060000e-54 222.0
21 TraesCS2B01G429400 chr1D 93.750 144 8 1 2950 3092 90578176 90578319 1.010000e-51 215.0
22 TraesCS2B01G429400 chr1D 85.616 146 15 5 1810 1955 22039361 22039222 1.040000e-31 148.0
23 TraesCS2B01G429400 chr5D 96.970 132 4 0 2958 3089 261390159 261390290 6.060000e-54 222.0
24 TraesCS2B01G429400 chr5D 88.235 119 11 3 568 684 256749944 256749827 6.280000e-29 139.0
25 TraesCS2B01G429400 chr7D 96.296 135 4 1 2952 3086 251036057 251035924 2.180000e-53 220.0
26 TraesCS2B01G429400 chr7D 73.673 452 92 19 115 555 580887197 580887632 2.900000e-32 150.0
27 TraesCS2B01G429400 chr7B 95.035 141 5 2 2958 3098 372835110 372834972 2.180000e-53 220.0
28 TraesCS2B01G429400 chr7B 78.462 260 49 5 298 555 707530791 707530537 3.730000e-36 163.0
29 TraesCS2B01G429400 chr5A 94.326 141 7 1 2960 3100 462868894 462868755 1.010000e-51 215.0
30 TraesCS2B01G429400 chr6D 74.330 448 93 17 115 554 388331167 388330734 2.230000e-38 171.0
31 TraesCS2B01G429400 chr4B 90.678 118 10 1 568 684 106227416 106227533 6.240000e-34 156.0
32 TraesCS2B01G429400 chr4A 85.616 146 19 1 1810 1955 176616793 176616936 8.070000e-33 152.0
33 TraesCS2B01G429400 chr4A 78.481 237 46 4 298 532 642550828 642551061 2.900000e-32 150.0
34 TraesCS2B01G429400 chr4A 88.136 118 13 1 568 684 29026078 29025961 6.280000e-29 139.0
35 TraesCS2B01G429400 chr5B 89.381 113 11 1 573 684 299602363 299602251 1.750000e-29 141.0
36 TraesCS2B01G429400 chr5B 98.039 51 1 0 3781 3831 142712563 142712513 6.420000e-14 89.8
37 TraesCS2B01G429400 chr5B 97.561 41 1 0 3829 3869 71906625 71906665 2.320000e-08 71.3
38 TraesCS2B01G429400 chr3B 92.308 91 5 2 3788 3878 321594223 321594135 1.360000e-25 128.0
39 TraesCS2B01G429400 chr3B 83.696 92 13 2 150 239 683345850 683345941 8.300000e-13 86.1
40 TraesCS2B01G429400 chr3B 97.561 41 1 0 3829 3869 86950650 86950690 2.320000e-08 71.3
41 TraesCS2B01G429400 chrUn 96.226 53 1 1 3780 3831 138274127 138274179 8.300000e-13 86.1
42 TraesCS2B01G429400 chrUn 96.226 53 1 1 3780 3831 138486767 138486819 8.300000e-13 86.1
43 TraesCS2B01G429400 chrUn 94.643 56 2 1 3780 3834 171110563 171110508 8.300000e-13 86.1
44 TraesCS2B01G429400 chrUn 94.643 56 2 1 3780 3834 172121628 172121573 8.300000e-13 86.1
45 TraesCS2B01G429400 chr6A 94.643 56 2 1 3780 3834 558454904 558454849 8.300000e-13 86.1
46 TraesCS2B01G429400 chr6A 94.643 56 2 1 3780 3834 558458989 558458934 8.300000e-13 86.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G429400 chr2B 616930101 616934756 4655 False 8599.000000 8599 100.000000 1 4656 1 chr2B.!!$F1 4655
1 TraesCS2B01G429400 chr2D 523024224 523028655 4431 False 1496.000000 3219 90.609250 1 4656 4 chr2D.!!$F5 4655
2 TraesCS2B01G429400 chr2A 668239167 668242908 3741 False 1600.666667 3024 91.496667 785 4656 3 chr2A.!!$F2 3871

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
438 446 0.034756 AAATTTTGGTTGGCTCCGGC 59.965 50.0 0.00 0.00 37.82 6.13 F
476 484 0.108186 ATGGCGCATCTTCAACTCGA 60.108 50.0 10.83 0.00 0.00 4.04 F
1344 1374 0.718343 CTCTGCGTAGAAGCTTGTGC 59.282 55.0 2.10 1.63 38.13 4.57 F
1682 1727 0.319405 GCTGGCAGTTCCTTGCATTT 59.681 50.0 17.16 0.00 45.86 2.32 F
3226 3292 0.442310 CCGCGGTGTTGTATTGTGAG 59.558 55.0 19.50 0.00 0.00 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1498 1543 0.881600 CAAGCAAAGGCAGGCCAAAC 60.882 55.000 13.63 0.0 44.61 2.93 R
1521 1566 1.523938 GCCCGCCTAGTGACAATCC 60.524 63.158 0.00 0.0 0.00 3.01 R
3064 3130 1.004394 ACTCCCTCCGTCCCAAAATTC 59.996 52.381 0.00 0.0 0.00 2.17 R
3399 3465 0.999406 CTCCCGTAATGAACTGCACG 59.001 55.000 0.00 0.0 0.00 5.34 R
4098 4246 0.390340 CCACCCATCCATCGCTATCG 60.390 60.000 0.00 0.0 0.00 2.92 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
68 69 1.484653 TCGATGACGGGATTTGTCCAT 59.515 47.619 0.00 0.00 40.21 3.41
75 76 2.844348 ACGGGATTTGTCCATTAGGAGT 59.156 45.455 0.00 0.00 46.92 3.85
79 80 5.016831 GGGATTTGTCCATTAGGAGTGTTT 58.983 41.667 0.00 0.00 46.92 2.83
95 96 2.792674 GTGTTTTGCTCCGTTTTTAGCC 59.207 45.455 0.00 0.00 37.97 3.93
96 97 2.048498 GTTTTGCTCCGTTTTTAGCCG 58.952 47.619 0.00 0.00 37.97 5.52
103 104 1.603326 TCCGTTTTTAGCCGTGGTTTC 59.397 47.619 0.00 0.00 0.00 2.78
127 128 2.025605 AGGTCGACTAGGGTATGTGTCA 60.026 50.000 16.46 0.00 0.00 3.58
132 133 4.579340 TCGACTAGGGTATGTGTCATTCTC 59.421 45.833 0.00 0.00 0.00 2.87
146 147 3.031013 TCATTCTCAGGAAGGCGATGTA 58.969 45.455 0.00 0.00 33.80 2.29
179 180 7.173047 GCTCCTTGAAGATGAAATAAGATCCTC 59.827 40.741 0.00 0.00 0.00 3.71
181 182 7.349330 TCCTTGAAGATGAAATAAGATCCTCCT 59.651 37.037 0.00 0.00 0.00 3.69
201 202 4.113815 CCAAGCCCATCCCAGCGA 62.114 66.667 0.00 0.00 0.00 4.93
210 211 2.835705 ATCCCAGCGACGCGTCTAG 61.836 63.158 33.94 21.83 0.00 2.43
253 254 1.125021 GTGTGTCTGTTGCGAATCTCG 59.875 52.381 0.00 0.00 43.89 4.04
254 255 1.000717 TGTGTCTGTTGCGAATCTCGA 60.001 47.619 0.00 0.00 43.74 4.04
277 278 0.387565 ATTTGGTTGGTGTTGGTCGC 59.612 50.000 0.00 0.00 0.00 5.19
283 284 2.147958 GTTGGTGTTGGTCGCTAATGA 58.852 47.619 0.00 0.00 30.42 2.57
327 335 7.044249 CGTATGTCTACAGTTTGTATCCTTTCG 60.044 40.741 0.00 0.00 31.66 3.46
331 339 7.033791 GTCTACAGTTTGTATCCTTTCGATCA 58.966 38.462 0.00 0.00 31.66 2.92
395 403 3.965347 GTTCTATGGGGCCTTAGTAGACA 59.035 47.826 0.84 0.00 0.00 3.41
401 409 2.838813 GGGGCCTTAGTAGACAACTTCT 59.161 50.000 0.84 0.00 39.80 2.85
403 411 3.514309 GGGCCTTAGTAGACAACTTCTCA 59.486 47.826 0.84 0.00 39.80 3.27
421 429 5.503662 TCTCAACTGTGTACTACGACAAA 57.496 39.130 0.00 0.00 0.00 2.83
438 446 0.034756 AAATTTTGGTTGGCTCCGGC 59.965 50.000 0.00 0.00 37.82 6.13
444 452 4.821589 GTTGGCTCCGGCGAGAGG 62.822 72.222 21.29 1.44 38.52 3.69
476 484 0.108186 ATGGCGCATCTTCAACTCGA 60.108 50.000 10.83 0.00 0.00 4.04
495 503 6.331061 ACTCGATCCAGTGTTTATAGTTGTC 58.669 40.000 0.00 0.00 0.00 3.18
521 529 4.302067 AGATGGTCTATGGACTTGGATGT 58.698 43.478 9.27 0.00 41.82 3.06
525 533 6.575244 TGGTCTATGGACTTGGATGTATTT 57.425 37.500 9.27 0.00 41.82 1.40
526 534 6.969043 TGGTCTATGGACTTGGATGTATTTT 58.031 36.000 9.27 0.00 41.82 1.82
527 535 7.410174 TGGTCTATGGACTTGGATGTATTTTT 58.590 34.615 9.27 0.00 41.82 1.94
570 586 8.313944 TCCTTGTACTGCTTATAATACTTCCA 57.686 34.615 0.00 0.00 0.00 3.53
571 587 8.764558 TCCTTGTACTGCTTATAATACTTCCAA 58.235 33.333 0.00 0.00 0.00 3.53
579 595 9.722056 CTGCTTATAATACTTCCAATCACAAAC 57.278 33.333 0.00 0.00 0.00 2.93
623 639 8.748380 TTTCTGAATCAGATGTATACATAGCG 57.252 34.615 18.28 9.79 40.39 4.26
624 640 7.454260 TCTGAATCAGATGTATACATAGCGT 57.546 36.000 18.28 3.61 35.39 5.07
628 644 9.974980 TGAATCAGATGTATACATAGCGTTTTA 57.025 29.630 18.28 5.82 36.57 1.52
630 646 7.869016 TCAGATGTATACATAGCGTTTTAGC 57.131 36.000 18.28 2.43 36.57 3.09
631 647 6.581166 TCAGATGTATACATAGCGTTTTAGCG 59.419 38.462 18.28 0.49 38.31 4.26
632 648 6.362551 CAGATGTATACATAGCGTTTTAGCGT 59.637 38.462 18.28 0.00 38.31 5.07
689 706 8.686397 TCATGTTGAAATATCCAAAATGAACG 57.314 30.769 15.71 0.00 42.24 3.95
690 707 8.518702 TCATGTTGAAATATCCAAAATGAACGA 58.481 29.630 15.71 1.32 42.24 3.85
691 708 8.800972 CATGTTGAAATATCCAAAATGAACGAG 58.199 33.333 12.32 0.00 40.13 4.18
692 709 7.312154 TGTTGAAATATCCAAAATGAACGAGG 58.688 34.615 0.00 0.00 0.00 4.63
693 710 7.175816 TGTTGAAATATCCAAAATGAACGAGGA 59.824 33.333 0.00 0.00 0.00 3.71
694 711 7.320443 TGAAATATCCAAAATGAACGAGGAG 57.680 36.000 0.00 0.00 0.00 3.69
695 712 6.318648 TGAAATATCCAAAATGAACGAGGAGG 59.681 38.462 0.00 0.00 0.00 4.30
696 713 3.721087 ATCCAAAATGAACGAGGAGGT 57.279 42.857 0.00 0.00 0.00 3.85
697 714 4.837093 ATCCAAAATGAACGAGGAGGTA 57.163 40.909 0.00 0.00 0.00 3.08
698 715 4.202245 TCCAAAATGAACGAGGAGGTAG 57.798 45.455 0.00 0.00 0.00 3.18
699 716 3.835978 TCCAAAATGAACGAGGAGGTAGA 59.164 43.478 0.00 0.00 0.00 2.59
700 717 4.469945 TCCAAAATGAACGAGGAGGTAGAT 59.530 41.667 0.00 0.00 0.00 1.98
701 718 4.811557 CCAAAATGAACGAGGAGGTAGATC 59.188 45.833 0.00 0.00 0.00 2.75
702 719 4.674281 AAATGAACGAGGAGGTAGATCC 57.326 45.455 0.00 0.00 39.89 3.36
703 720 2.820728 TGAACGAGGAGGTAGATCCA 57.179 50.000 0.00 0.00 42.26 3.41
704 721 3.095912 TGAACGAGGAGGTAGATCCAA 57.904 47.619 0.00 0.00 42.26 3.53
705 722 3.437213 TGAACGAGGAGGTAGATCCAAA 58.563 45.455 0.00 0.00 42.26 3.28
706 723 3.447586 TGAACGAGGAGGTAGATCCAAAG 59.552 47.826 0.00 0.00 42.26 2.77
707 724 3.103080 ACGAGGAGGTAGATCCAAAGT 57.897 47.619 0.00 0.00 42.26 2.66
708 725 3.442076 ACGAGGAGGTAGATCCAAAGTT 58.558 45.455 0.00 0.00 42.26 2.66
709 726 3.838903 ACGAGGAGGTAGATCCAAAGTTT 59.161 43.478 0.00 0.00 42.26 2.66
710 727 4.286291 ACGAGGAGGTAGATCCAAAGTTTT 59.714 41.667 0.00 0.00 42.26 2.43
711 728 5.221864 ACGAGGAGGTAGATCCAAAGTTTTT 60.222 40.000 0.00 0.00 42.26 1.94
742 759 6.718522 AAAATTCCCCTAAAGAAACAACGA 57.281 33.333 0.00 0.00 0.00 3.85
764 781 3.884895 TGTTTCTCTTTTCAGTGGCTGA 58.115 40.909 0.00 0.00 38.87 4.26
845 867 2.444700 TTTCAGAACCCGTCTCCGCC 62.445 60.000 0.00 0.00 32.70 6.13
913 935 0.875728 CAGTCGTCTGTTCTCCGTCT 59.124 55.000 1.16 0.00 36.97 4.18
1179 1209 4.467107 GGAGGAGCGGGGAGGTCT 62.467 72.222 0.00 0.00 46.05 3.85
1307 1337 2.046314 CAAGGTACCAGCCCACCG 60.046 66.667 15.94 0.00 39.94 4.94
1344 1374 0.718343 CTCTGCGTAGAAGCTTGTGC 59.282 55.000 2.10 1.63 38.13 4.57
1422 1452 4.135306 CAAGAGCATTGGATGATGTAGCT 58.865 43.478 0.00 0.00 0.00 3.32
1423 1453 3.741249 AGAGCATTGGATGATGTAGCTG 58.259 45.455 0.00 0.00 0.00 4.24
1452 1497 5.361857 GTGGACTGGGTTTATAGTGCTAGTA 59.638 44.000 0.00 0.00 36.39 1.82
1456 1501 5.962641 ACTGGGTTTATAGTGCTAGTAGGTT 59.037 40.000 0.00 0.00 0.00 3.50
1466 1511 5.014858 AGTGCTAGTAGGTTGCTGTAGTAA 58.985 41.667 0.00 0.00 0.00 2.24
1498 1543 5.075448 CGACAGAAGTGATGTTGATTTTCG 58.925 41.667 0.00 0.00 34.50 3.46
1502 1547 6.692681 ACAGAAGTGATGTTGATTTTCGTTTG 59.307 34.615 0.00 0.00 0.00 2.93
1521 1566 3.053828 CCTGCCTTTGCTTGGTGG 58.946 61.111 0.00 0.00 38.71 4.61
1575 1620 8.770850 TTTGTTTTGTGTTAGCGAGTATTTAC 57.229 30.769 0.00 0.00 0.00 2.01
1585 1630 4.856664 AGCGAGTATTTACGACTACCATG 58.143 43.478 0.00 0.00 0.00 3.66
1613 1658 6.551736 ACTCACAAGTCAAAACATACAACAC 58.448 36.000 0.00 0.00 0.00 3.32
1680 1725 0.964358 GAGCTGGCAGTTCCTTGCAT 60.964 55.000 19.39 0.00 45.86 3.96
1682 1727 0.319405 GCTGGCAGTTCCTTGCATTT 59.681 50.000 17.16 0.00 45.86 2.32
1692 1737 7.205297 GCAGTTCCTTGCATTTATATGAATGT 58.795 34.615 18.38 0.00 43.53 2.71
1696 1741 9.630098 GTTCCTTGCATTTATATGAATGTATGG 57.370 33.333 24.36 24.36 42.73 2.74
1697 1742 8.938801 TCCTTGCATTTATATGAATGTATGGT 57.061 30.769 26.70 0.00 42.37 3.55
2189 2235 4.295905 AGGTATTCCACAGGATTCCCTA 57.704 45.455 0.00 0.00 37.08 3.53
2329 2375 2.083167 AATGATTTTGGCTTGCCGTG 57.917 45.000 7.18 0.00 0.00 4.94
2541 2588 8.022809 TTCTGTATGAGTCCTGAGGTACAGAAT 61.023 40.741 25.51 10.59 46.12 2.40
2602 2649 7.877003 TGACTTTCTGTTGTTACTTTTGTTGA 58.123 30.769 0.00 0.00 0.00 3.18
2606 2653 8.682128 TTTCTGTTGTTACTTTTGTTGATGTC 57.318 30.769 0.00 0.00 0.00 3.06
2815 2881 6.112927 ACAAACCAACCTTTGCAATATCAT 57.887 33.333 0.00 0.00 34.93 2.45
2818 2884 7.818930 ACAAACCAACCTTTGCAATATCATAAG 59.181 33.333 0.00 0.00 34.93 1.73
2863 2929 2.631160 TGAACGTCCACTGGAATGTT 57.369 45.000 14.10 14.10 35.97 2.71
2864 2930 2.925724 TGAACGTCCACTGGAATGTTT 58.074 42.857 14.96 1.34 34.26 2.83
2928 2994 6.154203 TGCCATCATTTAAAGTTTCACACA 57.846 33.333 0.00 0.00 0.00 3.72
2931 2997 6.074356 GCCATCATTTAAAGTTTCACACACAC 60.074 38.462 0.00 0.00 0.00 3.82
2962 3028 9.574516 AAAACTCTGACCAATAATTCTTGTACT 57.425 29.630 3.23 0.00 0.00 2.73
2963 3029 8.779354 AACTCTGACCAATAATTCTTGTACTC 57.221 34.615 3.23 0.00 0.00 2.59
2964 3030 7.331791 ACTCTGACCAATAATTCTTGTACTCC 58.668 38.462 3.23 0.00 0.00 3.85
2965 3031 6.650120 TCTGACCAATAATTCTTGTACTCCC 58.350 40.000 3.23 0.00 0.00 4.30
2966 3032 6.443849 TCTGACCAATAATTCTTGTACTCCCT 59.556 38.462 3.23 0.00 0.00 4.20
2967 3033 6.650120 TGACCAATAATTCTTGTACTCCCTC 58.350 40.000 3.23 0.00 0.00 4.30
2968 3034 6.443849 TGACCAATAATTCTTGTACTCCCTCT 59.556 38.462 3.23 0.00 0.00 3.69
2969 3035 6.653989 ACCAATAATTCTTGTACTCCCTCTG 58.346 40.000 3.23 0.00 0.00 3.35
2970 3036 6.215636 ACCAATAATTCTTGTACTCCCTCTGT 59.784 38.462 3.23 0.00 0.00 3.41
2971 3037 6.763610 CCAATAATTCTTGTACTCCCTCTGTC 59.236 42.308 3.23 0.00 0.00 3.51
2972 3038 4.828072 AATTCTTGTACTCCCTCTGTCC 57.172 45.455 0.00 0.00 0.00 4.02
2973 3039 2.233305 TCTTGTACTCCCTCTGTCCC 57.767 55.000 0.00 0.00 0.00 4.46
2974 3040 1.431633 TCTTGTACTCCCTCTGTCCCA 59.568 52.381 0.00 0.00 0.00 4.37
2975 3041 2.158219 TCTTGTACTCCCTCTGTCCCAA 60.158 50.000 0.00 0.00 0.00 4.12
2976 3042 2.409064 TGTACTCCCTCTGTCCCAAA 57.591 50.000 0.00 0.00 0.00 3.28
2977 3043 2.696775 TGTACTCCCTCTGTCCCAAAA 58.303 47.619 0.00 0.00 0.00 2.44
2978 3044 3.256704 TGTACTCCCTCTGTCCCAAAAT 58.743 45.455 0.00 0.00 0.00 1.82
2979 3045 3.655777 TGTACTCCCTCTGTCCCAAAATT 59.344 43.478 0.00 0.00 0.00 1.82
2980 3046 3.441500 ACTCCCTCTGTCCCAAAATTC 57.558 47.619 0.00 0.00 0.00 2.17
2981 3047 2.989571 ACTCCCTCTGTCCCAAAATTCT 59.010 45.455 0.00 0.00 0.00 2.40
2982 3048 3.399305 ACTCCCTCTGTCCCAAAATTCTT 59.601 43.478 0.00 0.00 0.00 2.52
2983 3049 3.760684 CTCCCTCTGTCCCAAAATTCTTG 59.239 47.826 0.00 0.00 0.00 3.02
2984 3050 3.140144 TCCCTCTGTCCCAAAATTCTTGT 59.860 43.478 0.00 0.00 0.00 3.16
2985 3051 3.507622 CCCTCTGTCCCAAAATTCTTGTC 59.492 47.826 0.00 0.00 0.00 3.18
2986 3052 4.401925 CCTCTGTCCCAAAATTCTTGTCT 58.598 43.478 0.00 0.00 0.00 3.41
2987 3053 4.829492 CCTCTGTCCCAAAATTCTTGTCTT 59.171 41.667 0.00 0.00 0.00 3.01
2988 3054 6.003950 CCTCTGTCCCAAAATTCTTGTCTTA 58.996 40.000 0.00 0.00 0.00 2.10
2989 3055 6.150140 CCTCTGTCCCAAAATTCTTGTCTTAG 59.850 42.308 0.00 0.00 0.00 2.18
2990 3056 6.837312 TCTGTCCCAAAATTCTTGTCTTAGA 58.163 36.000 0.00 0.00 0.00 2.10
2991 3057 7.461749 TCTGTCCCAAAATTCTTGTCTTAGAT 58.538 34.615 0.00 0.00 0.00 1.98
2992 3058 7.944554 TCTGTCCCAAAATTCTTGTCTTAGATT 59.055 33.333 0.00 0.00 0.00 2.40
2993 3059 8.477419 TGTCCCAAAATTCTTGTCTTAGATTT 57.523 30.769 0.00 0.00 0.00 2.17
2994 3060 8.359642 TGTCCCAAAATTCTTGTCTTAGATTTG 58.640 33.333 0.00 0.00 29.84 2.32
2995 3061 8.360390 GTCCCAAAATTCTTGTCTTAGATTTGT 58.640 33.333 0.00 0.00 28.79 2.83
2996 3062 8.576442 TCCCAAAATTCTTGTCTTAGATTTGTC 58.424 33.333 0.00 0.00 28.79 3.18
2997 3063 8.579863 CCCAAAATTCTTGTCTTAGATTTGTCT 58.420 33.333 0.00 0.00 28.79 3.41
3042 3108 7.956420 TTAAAACGTGACTTGATACATCTGT 57.044 32.000 0.00 0.00 0.00 3.41
3043 3109 9.647797 ATTAAAACGTGACTTGATACATCTGTA 57.352 29.630 0.00 0.00 34.67 2.74
3044 3110 9.647797 TTAAAACGTGACTTGATACATCTGTAT 57.352 29.630 2.53 2.53 43.38 2.29
3045 3111 8.547967 AAAACGTGACTTGATACATCTGTATT 57.452 30.769 4.44 0.00 40.99 1.89
3046 3112 8.547967 AAACGTGACTTGATACATCTGTATTT 57.452 30.769 4.44 0.00 40.99 1.40
3047 3113 9.647797 AAACGTGACTTGATACATCTGTATTTA 57.352 29.630 4.44 0.00 40.99 1.40
3048 3114 8.858003 ACGTGACTTGATACATCTGTATTTAG 57.142 34.615 4.44 7.42 40.99 1.85
3049 3115 8.683615 ACGTGACTTGATACATCTGTATTTAGA 58.316 33.333 14.44 0.00 40.99 2.10
3050 3116 8.959058 CGTGACTTGATACATCTGTATTTAGAC 58.041 37.037 14.44 10.85 40.99 2.59
3051 3117 9.803315 GTGACTTGATACATCTGTATTTAGACA 57.197 33.333 14.44 12.43 40.99 3.41
3073 3139 8.579863 AGACAAATCTAAGACAAGAATTTTGGG 58.420 33.333 0.00 0.00 33.04 4.12
3074 3140 8.477419 ACAAATCTAAGACAAGAATTTTGGGA 57.523 30.769 0.00 0.00 33.04 4.37
3075 3141 8.360390 ACAAATCTAAGACAAGAATTTTGGGAC 58.640 33.333 0.00 0.00 33.04 4.46
3076 3142 6.743575 ATCTAAGACAAGAATTTTGGGACG 57.256 37.500 5.68 0.00 0.00 4.79
3077 3143 5.001232 TCTAAGACAAGAATTTTGGGACGG 58.999 41.667 0.00 0.00 0.00 4.79
3078 3144 3.502123 AGACAAGAATTTTGGGACGGA 57.498 42.857 0.00 0.00 0.00 4.69
3079 3145 3.412386 AGACAAGAATTTTGGGACGGAG 58.588 45.455 0.00 0.00 0.00 4.63
3080 3146 2.488153 GACAAGAATTTTGGGACGGAGG 59.512 50.000 0.00 0.00 0.00 4.30
3081 3147 1.818674 CAAGAATTTTGGGACGGAGGG 59.181 52.381 0.00 0.00 0.00 4.30
3082 3148 1.368374 AGAATTTTGGGACGGAGGGA 58.632 50.000 0.00 0.00 0.00 4.20
3083 3149 1.282157 AGAATTTTGGGACGGAGGGAG 59.718 52.381 0.00 0.00 0.00 4.30
3084 3150 1.004394 GAATTTTGGGACGGAGGGAGT 59.996 52.381 0.00 0.00 0.00 3.85
3085 3151 1.961133 ATTTTGGGACGGAGGGAGTA 58.039 50.000 0.00 0.00 0.00 2.59
3162 3228 6.329496 TCTGAAGGATTTGTTTGTGTTGTTC 58.671 36.000 0.00 0.00 0.00 3.18
3168 3234 9.965824 AAGGATTTGTTTGTGTTGTTCTATAAG 57.034 29.630 0.00 0.00 0.00 1.73
3226 3292 0.442310 CCGCGGTGTTGTATTGTGAG 59.558 55.000 19.50 0.00 0.00 3.51
3236 3302 1.065926 TGTATTGTGAGGCAGAGGCTG 60.066 52.381 0.00 0.00 38.98 4.85
3270 3336 3.891366 ACATGTTCCCTTTTCAGTCCTTG 59.109 43.478 0.00 0.00 0.00 3.61
3329 3395 7.654116 GCCAGTATCTTACTCTAGACAAAATCC 59.346 40.741 0.00 0.00 36.76 3.01
3393 3459 2.694628 TGGTGCAACTGAATTTCTGCTT 59.305 40.909 2.04 0.26 36.74 3.91
3394 3460 3.888323 TGGTGCAACTGAATTTCTGCTTA 59.112 39.130 2.04 0.00 36.74 3.09
3395 3461 4.022935 TGGTGCAACTGAATTTCTGCTTAG 60.023 41.667 2.04 0.00 36.74 2.18
3396 3462 4.022849 GGTGCAACTGAATTTCTGCTTAGT 60.023 41.667 0.00 0.00 36.74 2.24
3397 3463 5.181245 GGTGCAACTGAATTTCTGCTTAGTA 59.819 40.000 0.00 0.00 36.74 1.82
3398 3464 6.310197 GTGCAACTGAATTTCTGCTTAGTAG 58.690 40.000 9.63 0.00 35.78 2.57
3399 3465 9.884653 GGTGCAACTGAATTTCTGCTTAGTAGC 62.885 44.444 0.00 0.00 42.17 3.58
3414 3482 2.259618 AGTAGCGTGCAGTTCATTACG 58.740 47.619 0.00 0.00 39.37 3.18
3418 3486 0.999406 CGTGCAGTTCATTACGGGAG 59.001 55.000 0.00 0.00 33.27 4.30
3638 3709 6.538945 AAGGAAAACAAGCTCCAAAAGTTA 57.461 33.333 0.00 0.00 33.83 2.24
3690 3761 5.871531 TTTTTGTAGTGTACGTCGAGAAC 57.128 39.130 0.00 0.00 0.00 3.01
3711 3782 4.848357 ACGATCATCTTCCTGGACAATTT 58.152 39.130 0.00 0.00 0.00 1.82
3713 3784 5.124457 ACGATCATCTTCCTGGACAATTTTG 59.876 40.000 0.00 0.00 0.00 2.44
3714 3785 4.789012 TCATCTTCCTGGACAATTTTGC 57.211 40.909 0.00 0.00 0.00 3.68
3715 3786 4.151121 TCATCTTCCTGGACAATTTTGCA 58.849 39.130 0.00 0.00 0.00 4.08
3723 3797 3.911868 TGGACAATTTTGCAAGGAATCG 58.088 40.909 0.00 0.00 0.00 3.34
3739 3813 3.871594 GGAATCGCAGCTGTGTAACTTAT 59.128 43.478 25.68 8.98 38.04 1.73
3740 3814 4.332819 GGAATCGCAGCTGTGTAACTTATT 59.667 41.667 25.68 16.63 38.04 1.40
3742 3816 6.036735 GGAATCGCAGCTGTGTAACTTATTAA 59.963 38.462 25.68 3.83 38.04 1.40
3744 3818 5.716094 TCGCAGCTGTGTAACTTATTAAGA 58.284 37.500 25.68 0.00 38.04 2.10
3745 3819 5.805486 TCGCAGCTGTGTAACTTATTAAGAG 59.195 40.000 25.68 0.00 38.04 2.85
3748 3826 7.010552 CGCAGCTGTGTAACTTATTAAGAGAAT 59.989 37.037 19.30 0.00 38.04 2.40
3775 3853 3.055167 TCTGTCTACCATGTGATGTTGGG 60.055 47.826 0.00 0.00 37.32 4.12
3789 3867 6.992123 TGTGATGTTGGGAAGATGTCATATAC 59.008 38.462 0.00 0.00 0.00 1.47
3790 3868 7.147497 TGTGATGTTGGGAAGATGTCATATACT 60.147 37.037 0.00 0.00 0.00 2.12
3791 3869 7.386299 GTGATGTTGGGAAGATGTCATATACTC 59.614 40.741 0.00 0.00 0.00 2.59
3792 3870 6.174720 TGTTGGGAAGATGTCATATACTCC 57.825 41.667 0.00 0.00 0.00 3.85
3793 3871 5.071788 TGTTGGGAAGATGTCATATACTCCC 59.928 44.000 9.48 9.48 35.56 4.30
3794 3872 5.093236 TGGGAAGATGTCATATACTCCCT 57.907 43.478 15.29 0.00 35.98 4.20
3795 3873 5.476983 TGGGAAGATGTCATATACTCCCTT 58.523 41.667 15.29 0.77 35.98 3.95
3796 3874 5.544176 TGGGAAGATGTCATATACTCCCTTC 59.456 44.000 15.29 8.50 35.98 3.46
3797 3875 5.336849 GGGAAGATGTCATATACTCCCTTCG 60.337 48.000 9.22 0.00 33.40 3.79
3798 3876 5.244178 GGAAGATGTCATATACTCCCTTCGT 59.756 44.000 0.00 0.00 33.40 3.85
3799 3877 5.968528 AGATGTCATATACTCCCTTCGTC 57.031 43.478 0.00 0.00 0.00 4.20
3800 3878 4.767928 AGATGTCATATACTCCCTTCGTCC 59.232 45.833 0.00 0.00 0.00 4.79
3801 3879 2.882761 TGTCATATACTCCCTTCGTCCG 59.117 50.000 0.00 0.00 0.00 4.79
3802 3880 2.228343 GTCATATACTCCCTTCGTCCGG 59.772 54.545 0.00 0.00 0.00 5.14
3803 3881 2.107031 TCATATACTCCCTTCGTCCGGA 59.893 50.000 0.00 0.00 0.00 5.14
3804 3882 2.734755 TATACTCCCTTCGTCCGGAA 57.265 50.000 5.23 0.00 0.00 4.30
3805 3883 1.856629 ATACTCCCTTCGTCCGGAAA 58.143 50.000 5.23 0.00 33.34 3.13
3806 3884 1.856629 TACTCCCTTCGTCCGGAAAT 58.143 50.000 5.23 0.00 33.34 2.17
3807 3885 1.856629 ACTCCCTTCGTCCGGAAATA 58.143 50.000 5.23 0.00 33.34 1.40
3808 3886 1.479730 ACTCCCTTCGTCCGGAAATAC 59.520 52.381 5.23 0.00 33.34 1.89
3809 3887 1.755380 CTCCCTTCGTCCGGAAATACT 59.245 52.381 5.23 0.00 33.34 2.12
3810 3888 2.167900 CTCCCTTCGTCCGGAAATACTT 59.832 50.000 5.23 0.00 33.34 2.24
3811 3889 2.093869 TCCCTTCGTCCGGAAATACTTG 60.094 50.000 5.23 0.00 33.34 3.16
3812 3890 2.354403 CCCTTCGTCCGGAAATACTTGT 60.354 50.000 5.23 0.00 33.34 3.16
3813 3891 2.928116 CCTTCGTCCGGAAATACTTGTC 59.072 50.000 5.23 0.00 33.34 3.18
3814 3892 3.581755 CTTCGTCCGGAAATACTTGTCA 58.418 45.455 5.23 0.00 33.34 3.58
3815 3893 3.880047 TCGTCCGGAAATACTTGTCAT 57.120 42.857 5.23 0.00 0.00 3.06
3816 3894 4.196626 TCGTCCGGAAATACTTGTCATT 57.803 40.909 5.23 0.00 0.00 2.57
3817 3895 3.930229 TCGTCCGGAAATACTTGTCATTG 59.070 43.478 5.23 0.00 0.00 2.82
3818 3896 3.930229 CGTCCGGAAATACTTGTCATTGA 59.070 43.478 5.23 0.00 0.00 2.57
3819 3897 4.390603 CGTCCGGAAATACTTGTCATTGAA 59.609 41.667 5.23 0.00 0.00 2.69
3820 3898 5.106869 CGTCCGGAAATACTTGTCATTGAAA 60.107 40.000 5.23 0.00 0.00 2.69
3821 3899 6.403200 CGTCCGGAAATACTTGTCATTGAAAT 60.403 38.462 5.23 0.00 0.00 2.17
3822 3900 6.747280 GTCCGGAAATACTTGTCATTGAAATG 59.253 38.462 5.23 0.00 37.75 2.32
3823 3901 6.035843 CCGGAAATACTTGTCATTGAAATGG 58.964 40.000 0.00 0.00 37.03 3.16
3824 3902 6.127758 CCGGAAATACTTGTCATTGAAATGGA 60.128 38.462 0.00 0.00 37.03 3.41
3825 3903 7.416664 CCGGAAATACTTGTCATTGAAATGGAT 60.417 37.037 0.00 0.00 37.03 3.41
3826 3904 7.433131 CGGAAATACTTGTCATTGAAATGGATG 59.567 37.037 3.31 0.00 37.03 3.51
3827 3905 8.253113 GGAAATACTTGTCATTGAAATGGATGT 58.747 33.333 3.31 2.77 37.03 3.06
3846 3924 7.338800 GGATGTATCCATTTTGATGACAACT 57.661 36.000 6.03 0.00 46.38 3.16
3847 3925 8.450578 GGATGTATCCATTTTGATGACAACTA 57.549 34.615 6.03 0.00 46.38 2.24
3848 3926 8.902806 GGATGTATCCATTTTGATGACAACTAA 58.097 33.333 6.03 0.00 46.38 2.24
3852 3930 9.736023 GTATCCATTTTGATGACAACTAATTCC 57.264 33.333 0.00 0.00 35.63 3.01
3853 3931 7.773489 TCCATTTTGATGACAACTAATTCCA 57.227 32.000 0.00 0.00 35.63 3.53
3854 3932 7.829725 TCCATTTTGATGACAACTAATTCCAG 58.170 34.615 0.00 0.00 35.63 3.86
3855 3933 7.669304 TCCATTTTGATGACAACTAATTCCAGA 59.331 33.333 0.00 0.00 35.63 3.86
3856 3934 8.472413 CCATTTTGATGACAACTAATTCCAGAT 58.528 33.333 0.00 0.00 35.63 2.90
3857 3935 9.297586 CATTTTGATGACAACTAATTCCAGATG 57.702 33.333 0.00 0.00 35.63 2.90
3858 3936 7.395190 TTTGATGACAACTAATTCCAGATGG 57.605 36.000 0.00 0.00 35.63 3.51
3859 3937 6.312141 TGATGACAACTAATTCCAGATGGA 57.688 37.500 0.00 0.00 43.73 3.41
3860 3938 6.351711 TGATGACAACTAATTCCAGATGGAG 58.648 40.000 1.13 0.00 46.36 3.86
3861 3939 5.102953 TGACAACTAATTCCAGATGGAGG 57.897 43.478 1.13 0.00 46.36 4.30
3862 3940 4.080356 TGACAACTAATTCCAGATGGAGGG 60.080 45.833 1.13 0.00 46.36 4.30
3863 3941 4.111577 ACAACTAATTCCAGATGGAGGGA 58.888 43.478 1.13 0.00 46.36 4.20
3864 3942 4.164988 ACAACTAATTCCAGATGGAGGGAG 59.835 45.833 1.13 3.54 46.36 4.30
3865 3943 4.014273 ACTAATTCCAGATGGAGGGAGT 57.986 45.455 1.13 4.12 46.36 3.85
3866 3944 5.157770 ACTAATTCCAGATGGAGGGAGTA 57.842 43.478 1.13 0.00 46.36 2.59
3867 3945 4.902448 ACTAATTCCAGATGGAGGGAGTAC 59.098 45.833 1.13 0.00 46.36 2.73
3879 3957 7.995488 AGATGGAGGGAGTACTAATTTGAAATG 59.005 37.037 0.00 0.00 0.00 2.32
3880 3958 5.885912 TGGAGGGAGTACTAATTTGAAATGC 59.114 40.000 0.00 0.00 0.00 3.56
3895 3973 2.715749 AATGCCTGATCGTCCATCAA 57.284 45.000 0.00 0.00 41.25 2.57
3907 3985 3.634910 TCGTCCATCAATCCTCATTACGA 59.365 43.478 0.00 0.00 34.80 3.43
3910 3988 5.573282 CGTCCATCAATCCTCATTACGATAC 59.427 44.000 0.00 0.00 0.00 2.24
3915 3993 5.286438 TCAATCCTCATTACGATACGGTTG 58.714 41.667 0.00 0.00 0.00 3.77
3947 4032 4.552166 GTGATCATAAATCACGGGGTTG 57.448 45.455 0.00 0.00 38.97 3.77
3953 4038 2.547299 AAATCACGGGGTTGTACGAA 57.453 45.000 0.00 0.00 0.00 3.85
3978 4063 0.250234 GATGTGCCTGTGTCTGGCTA 59.750 55.000 16.13 7.94 46.43 3.93
3982 4067 2.103094 TGTGCCTGTGTCTGGCTATATC 59.897 50.000 16.13 5.41 46.43 1.63
3986 4071 3.643763 CCTGTGTCTGGCTATATCGTTC 58.356 50.000 0.00 0.00 0.00 3.95
3992 4077 3.060473 GTCTGGCTATATCGTTCGTTTGC 60.060 47.826 0.00 0.00 0.00 3.68
3994 4079 1.191647 GGCTATATCGTTCGTTTGCCG 59.808 52.381 0.00 0.00 38.13 5.69
3998 4083 1.676438 TATCGTTCGTTTGCCGTCGC 61.676 55.000 0.00 0.00 37.94 5.19
4017 4103 1.148310 CTTCGTCCAAATCGCAGTGT 58.852 50.000 0.00 0.00 0.00 3.55
4034 4120 1.159713 TGTTGCAGCAAGTCACGAGG 61.160 55.000 8.49 0.00 0.00 4.63
4035 4121 1.597854 TTGCAGCAAGTCACGAGGG 60.598 57.895 2.83 0.00 0.00 4.30
4060 4160 1.877637 AATGTTGCTGTGCTGTCGTA 58.122 45.000 0.00 0.00 0.00 3.43
4077 4225 0.107643 GTAGCCAGGGATGGAGCTTC 59.892 60.000 0.00 0.00 36.79 3.86
4087 4235 0.613260 ATGGAGCTTCGTTACAGGCA 59.387 50.000 0.00 0.00 0.00 4.75
4088 4236 0.613260 TGGAGCTTCGTTACAGGCAT 59.387 50.000 0.00 0.00 0.00 4.40
4089 4237 1.003118 TGGAGCTTCGTTACAGGCATT 59.997 47.619 0.00 0.00 0.00 3.56
4090 4238 2.084546 GGAGCTTCGTTACAGGCATTT 58.915 47.619 0.00 0.00 0.00 2.32
4091 4239 2.488153 GGAGCTTCGTTACAGGCATTTT 59.512 45.455 0.00 0.00 0.00 1.82
4092 4240 3.426292 GGAGCTTCGTTACAGGCATTTTC 60.426 47.826 0.00 0.00 0.00 2.29
4093 4241 2.159627 AGCTTCGTTACAGGCATTTTCG 59.840 45.455 0.00 0.00 0.00 3.46
4094 4242 2.727916 GCTTCGTTACAGGCATTTTCGG 60.728 50.000 0.00 0.00 0.00 4.30
4095 4243 2.459060 TCGTTACAGGCATTTTCGGA 57.541 45.000 0.00 0.00 0.00 4.55
4096 4244 2.343101 TCGTTACAGGCATTTTCGGAG 58.657 47.619 0.00 0.00 0.00 4.63
4097 4245 1.396996 CGTTACAGGCATTTTCGGAGG 59.603 52.381 0.00 0.00 0.00 4.30
4098 4246 1.132453 GTTACAGGCATTTTCGGAGGC 59.868 52.381 0.00 0.00 0.00 4.70
4099 4247 0.742990 TACAGGCATTTTCGGAGGCG 60.743 55.000 0.00 0.00 0.00 5.52
4100 4248 1.745115 CAGGCATTTTCGGAGGCGA 60.745 57.895 0.00 0.00 0.00 5.54
4101 4249 1.097547 CAGGCATTTTCGGAGGCGAT 61.098 55.000 0.00 0.00 0.00 4.58
4134 4286 4.767255 GTGTGGAGCGCCTCTGGG 62.767 72.222 8.34 0.00 34.31 4.45
4353 4525 3.003378 CGTGGAAAGAAGAGAAAACCCAC 59.997 47.826 0.00 0.00 39.38 4.61
4442 4617 4.022416 CGATCCTTTTGGTTGGTTGATTGA 60.022 41.667 0.00 0.00 41.38 2.57
4455 4630 6.395426 TGGTTGATTGATTGATAATGAGGC 57.605 37.500 0.00 0.00 0.00 4.70
4461 4637 3.396560 TGATTGATAATGAGGCGCTCTG 58.603 45.455 7.64 0.00 0.00 3.35
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
75 76 2.541999 CGGCTAAAAACGGAGCAAAACA 60.542 45.455 0.00 0.00 40.64 2.83
79 80 0.589223 CACGGCTAAAAACGGAGCAA 59.411 50.000 0.00 0.00 40.64 3.91
95 96 0.314302 AGTCGACCTCAGAAACCACG 59.686 55.000 13.01 0.00 0.00 4.94
96 97 2.094649 CCTAGTCGACCTCAGAAACCAC 60.095 54.545 13.01 0.00 0.00 4.16
103 104 2.619177 CACATACCCTAGTCGACCTCAG 59.381 54.545 13.01 7.19 0.00 3.35
127 128 2.224161 GCTACATCGCCTTCCTGAGAAT 60.224 50.000 0.00 0.00 0.00 2.40
132 133 0.032678 ATCGCTACATCGCCTTCCTG 59.967 55.000 0.00 0.00 0.00 3.86
179 180 4.883354 GGGATGGGCTTGGCGAGG 62.883 72.222 3.44 0.00 0.00 4.63
181 182 4.113815 CTGGGATGGGCTTGGCGA 62.114 66.667 0.00 0.00 0.00 5.54
201 202 1.974249 TTCGACGATGCTAGACGCGT 61.974 55.000 13.85 13.85 43.27 6.01
239 240 0.173481 TCCCTCGAGATTCGCAACAG 59.827 55.000 15.71 0.00 40.21 3.16
253 254 1.618343 CCAACACCAACCAAATCCCTC 59.382 52.381 0.00 0.00 0.00 4.30
254 255 1.062505 ACCAACACCAACCAAATCCCT 60.063 47.619 0.00 0.00 0.00 4.20
277 278 4.261801 ACGGATCCACCAAGTTTCATTAG 58.738 43.478 13.41 0.00 38.90 1.73
283 284 1.202722 ACGAACGGATCCACCAAGTTT 60.203 47.619 13.41 0.00 38.90 2.66
327 335 5.403466 GTGCCAATGAAAAGAAGTGTTGATC 59.597 40.000 0.00 0.00 0.00 2.92
331 339 3.490761 CCGTGCCAATGAAAAGAAGTGTT 60.491 43.478 0.00 0.00 0.00 3.32
362 370 1.942657 CCCATAGAACCAACGCATCAG 59.057 52.381 0.00 0.00 0.00 2.90
395 403 5.066893 TGTCGTAGTACACAGTTGAGAAGTT 59.933 40.000 0.38 0.00 0.00 2.66
401 409 7.403421 CAAAATTTGTCGTAGTACACAGTTGA 58.597 34.615 0.38 0.00 0.00 3.18
403 411 6.316890 ACCAAAATTTGTCGTAGTACACAGTT 59.683 34.615 4.92 1.89 0.00 3.16
421 429 2.635443 CGCCGGAGCCAACCAAAAT 61.635 57.895 5.05 0.00 34.57 1.82
444 452 2.567497 CGCCATCATCATTGCCCCC 61.567 63.158 0.00 0.00 0.00 5.40
453 461 1.945394 AGTTGAAGATGCGCCATCATC 59.055 47.619 17.94 15.97 42.72 2.92
476 484 8.234136 TCTATCGACAACTATAAACACTGGAT 57.766 34.615 0.00 0.00 0.00 3.41
495 503 4.767409 TCCAAGTCCATAGACCATCTATCG 59.233 45.833 0.00 0.00 44.72 2.92
597 613 9.196552 CGCTATGTATACATCTGATTCAGAAAA 57.803 33.333 21.49 9.03 44.04 2.29
601 617 8.526218 AAACGCTATGTATACATCTGATTCAG 57.474 34.615 21.49 12.46 37.76 3.02
604 620 8.926710 GCTAAAACGCTATGTATACATCTGATT 58.073 33.333 21.49 10.62 37.76 2.57
608 624 6.362551 CACGCTAAAACGCTATGTATACATCT 59.637 38.462 21.49 2.80 35.68 2.90
621 637 2.212466 GTGAACAAACACGCTAAAACGC 59.788 45.455 0.00 0.00 36.19 4.84
622 638 3.676540 AGTGAACAAACACGCTAAAACG 58.323 40.909 0.00 0.00 44.35 3.60
623 639 4.654015 TGAGTGAACAAACACGCTAAAAC 58.346 39.130 0.00 0.00 44.35 2.43
624 640 4.948608 TGAGTGAACAAACACGCTAAAA 57.051 36.364 0.00 0.00 44.35 1.52
628 644 3.376859 TGAAATGAGTGAACAAACACGCT 59.623 39.130 0.00 0.00 44.35 5.07
629 645 3.690422 TGAAATGAGTGAACAAACACGC 58.310 40.909 0.00 0.00 44.35 5.34
630 646 4.908736 ACTGAAATGAGTGAACAAACACG 58.091 39.130 0.00 0.00 44.35 4.49
631 647 5.163663 TGGACTGAAATGAGTGAACAAACAC 60.164 40.000 0.00 0.00 40.60 3.32
632 648 4.946772 TGGACTGAAATGAGTGAACAAACA 59.053 37.500 0.00 0.00 0.00 2.83
668 685 7.535139 TCCTCGTTCATTTTGGATATTTCAAC 58.465 34.615 0.00 0.00 0.00 3.18
672 689 6.187682 ACCTCCTCGTTCATTTTGGATATTT 58.812 36.000 0.00 0.00 0.00 1.40
673 690 5.755849 ACCTCCTCGTTCATTTTGGATATT 58.244 37.500 0.00 0.00 0.00 1.28
674 691 5.373812 ACCTCCTCGTTCATTTTGGATAT 57.626 39.130 0.00 0.00 0.00 1.63
675 692 4.837093 ACCTCCTCGTTCATTTTGGATA 57.163 40.909 0.00 0.00 0.00 2.59
676 693 3.721087 ACCTCCTCGTTCATTTTGGAT 57.279 42.857 0.00 0.00 0.00 3.41
677 694 3.835978 TCTACCTCCTCGTTCATTTTGGA 59.164 43.478 0.00 0.00 0.00 3.53
678 695 4.202245 TCTACCTCCTCGTTCATTTTGG 57.798 45.455 0.00 0.00 0.00 3.28
679 696 4.811557 GGATCTACCTCCTCGTTCATTTTG 59.188 45.833 0.00 0.00 35.41 2.44
680 697 4.469945 TGGATCTACCTCCTCGTTCATTTT 59.530 41.667 0.00 0.00 39.86 1.82
681 698 4.030913 TGGATCTACCTCCTCGTTCATTT 58.969 43.478 0.00 0.00 39.86 2.32
682 699 3.643237 TGGATCTACCTCCTCGTTCATT 58.357 45.455 0.00 0.00 39.86 2.57
683 700 3.314307 TGGATCTACCTCCTCGTTCAT 57.686 47.619 0.00 0.00 39.86 2.57
684 701 2.820728 TGGATCTACCTCCTCGTTCA 57.179 50.000 0.00 0.00 39.86 3.18
685 702 3.447944 ACTTTGGATCTACCTCCTCGTTC 59.552 47.826 0.00 0.00 39.86 3.95
686 703 3.442076 ACTTTGGATCTACCTCCTCGTT 58.558 45.455 0.00 0.00 39.86 3.85
687 704 3.103080 ACTTTGGATCTACCTCCTCGT 57.897 47.619 0.00 0.00 39.86 4.18
688 705 4.473477 AAACTTTGGATCTACCTCCTCG 57.527 45.455 0.00 0.00 39.86 4.63
718 735 7.114866 TCGTTGTTTCTTTAGGGGAATTTTT 57.885 32.000 0.00 0.00 0.00 1.94
719 736 6.718522 TCGTTGTTTCTTTAGGGGAATTTT 57.281 33.333 0.00 0.00 0.00 1.82
720 737 6.266786 ACATCGTTGTTTCTTTAGGGGAATTT 59.733 34.615 0.00 0.00 29.55 1.82
721 738 5.773176 ACATCGTTGTTTCTTTAGGGGAATT 59.227 36.000 0.00 0.00 29.55 2.17
722 739 5.321927 ACATCGTTGTTTCTTTAGGGGAAT 58.678 37.500 0.00 0.00 29.55 3.01
723 740 4.721132 ACATCGTTGTTTCTTTAGGGGAA 58.279 39.130 0.00 0.00 29.55 3.97
724 741 4.360951 ACATCGTTGTTTCTTTAGGGGA 57.639 40.909 0.00 0.00 29.55 4.81
736 753 5.220854 CCACTGAAAAGAGAAACATCGTTGT 60.221 40.000 0.00 0.00 37.82 3.32
737 754 5.207768 CCACTGAAAAGAGAAACATCGTTG 58.792 41.667 0.00 0.00 0.00 4.10
738 755 4.261197 GCCACTGAAAAGAGAAACATCGTT 60.261 41.667 0.00 0.00 0.00 3.85
739 756 3.251004 GCCACTGAAAAGAGAAACATCGT 59.749 43.478 0.00 0.00 0.00 3.73
740 757 3.499918 AGCCACTGAAAAGAGAAACATCG 59.500 43.478 0.00 0.00 0.00 3.84
741 758 4.516698 TCAGCCACTGAAAAGAGAAACATC 59.483 41.667 0.00 0.00 37.57 3.06
742 759 4.464008 TCAGCCACTGAAAAGAGAAACAT 58.536 39.130 0.00 0.00 37.57 2.71
837 859 0.389948 ATTCGTGTTCAGGCGGAGAC 60.390 55.000 0.00 0.00 0.00 3.36
845 867 3.496130 AGTGCTTCAAGATTCGTGTTCAG 59.504 43.478 0.00 0.00 0.00 3.02
902 924 2.649034 GGCGTGAGACGGAGAACA 59.351 61.111 0.00 0.00 42.82 3.18
913 935 2.683933 GGAGGAAGAGGGGCGTGA 60.684 66.667 0.00 0.00 0.00 4.35
1094 1124 4.754114 TCTTCTTGCTCTTCTTCTTCTTGC 59.246 41.667 0.00 0.00 0.00 4.01
1155 1185 2.604152 CCCGCTCCTCCTACTCCT 59.396 66.667 0.00 0.00 0.00 3.69
1307 1337 1.985684 GAGCAATTTTAGCCGTGCAAC 59.014 47.619 0.00 0.00 39.50 4.17
1353 1383 4.512944 AGCAATTGATAGTATGCCGAACAG 59.487 41.667 10.34 0.00 39.59 3.16
1466 1511 4.997395 ACATCACTTCTGTCGCTGTATTTT 59.003 37.500 0.00 0.00 0.00 1.82
1498 1543 0.881600 CAAGCAAAGGCAGGCCAAAC 60.882 55.000 13.63 0.00 44.61 2.93
1502 1547 2.919328 ACCAAGCAAAGGCAGGCC 60.919 61.111 0.97 0.97 44.61 5.19
1521 1566 1.523938 GCCCGCCTAGTGACAATCC 60.524 63.158 0.00 0.00 0.00 3.01
1549 1594 7.908193 AAATACTCGCTAACACAAAACAAAG 57.092 32.000 0.00 0.00 0.00 2.77
1550 1595 7.583401 CGTAAATACTCGCTAACACAAAACAAA 59.417 33.333 0.00 0.00 0.00 2.83
1575 1620 3.313012 TGTGAGTTTCCATGGTAGTCG 57.687 47.619 12.58 0.00 0.00 4.18
1585 1630 6.791303 TGTATGTTTTGACTTGTGAGTTTCC 58.209 36.000 0.00 0.00 35.88 3.13
1613 1658 6.189677 TGTTCTCAAAGTTAAGTGTTGTGG 57.810 37.500 0.00 0.00 0.00 4.17
1806 1852 7.119262 ACAATTGTTAAGAGATAGTGAAACGGG 59.881 37.037 4.92 0.00 45.86 5.28
1877 1923 4.455606 GCAGTTCTTCATACTATGCCCTT 58.544 43.478 0.00 0.00 0.00 3.95
2342 2388 9.409312 CACAAGCAATTCAAACATCATAACTAA 57.591 29.630 0.00 0.00 0.00 2.24
2466 2512 8.480501 GGGTACTTATAGTTTATCAAGTGGTGA 58.519 37.037 0.00 0.00 41.67 4.02
2491 2537 5.607939 AACCTAAAAACCCTTGAAACAGG 57.392 39.130 0.00 0.00 0.00 4.00
2541 2588 3.109847 GGCTCCACCAACAAACTGA 57.890 52.632 0.00 0.00 38.86 3.41
2602 2649 5.305644 ACTGAAGGTAGAAGAGTGTTGACAT 59.694 40.000 0.00 0.00 0.00 3.06
2606 2653 5.242838 AGAGACTGAAGGTAGAAGAGTGTTG 59.757 44.000 0.00 0.00 0.00 3.33
2614 2661 3.176924 AGGCAGAGACTGAAGGTAGAA 57.823 47.619 2.81 0.00 32.44 2.10
2725 2791 4.396790 TCGAAGTACTGTTGCCTTTTGTTT 59.603 37.500 0.00 0.00 0.00 2.83
2815 2881 2.290367 GCGAATGCATGCATGGTACTTA 59.710 45.455 32.79 2.00 42.15 2.24
2818 2884 3.168628 GCGAATGCATGCATGGTAC 57.831 52.632 32.79 21.38 42.15 3.34
2863 2929 3.275617 AGACCAACTGCAACACACTAA 57.724 42.857 0.00 0.00 0.00 2.24
2864 2930 4.617253 ATAGACCAACTGCAACACACTA 57.383 40.909 0.00 0.00 0.00 2.74
2939 3005 7.331791 GGAGTACAAGAATTATTGGTCAGAGT 58.668 38.462 16.65 0.00 34.36 3.24
2940 3006 6.763610 GGGAGTACAAGAATTATTGGTCAGAG 59.236 42.308 16.65 0.00 34.36 3.35
2945 3011 6.215636 ACAGAGGGAGTACAAGAATTATTGGT 59.784 38.462 16.65 5.64 34.36 3.67
2946 3012 6.653989 ACAGAGGGAGTACAAGAATTATTGG 58.346 40.000 16.65 0.01 34.36 3.16
2961 3027 3.728385 AGAATTTTGGGACAGAGGGAG 57.272 47.619 0.00 0.00 42.39 4.30
2962 3028 3.140144 ACAAGAATTTTGGGACAGAGGGA 59.860 43.478 5.68 0.00 42.39 4.20
2963 3029 3.500343 ACAAGAATTTTGGGACAGAGGG 58.500 45.455 5.68 0.00 42.39 4.30
2964 3030 4.401925 AGACAAGAATTTTGGGACAGAGG 58.598 43.478 5.68 0.00 42.39 3.69
2965 3031 6.936900 TCTAAGACAAGAATTTTGGGACAGAG 59.063 38.462 5.68 0.00 42.39 3.35
2966 3032 6.837312 TCTAAGACAAGAATTTTGGGACAGA 58.163 36.000 5.68 0.00 42.39 3.41
2967 3033 7.693969 ATCTAAGACAAGAATTTTGGGACAG 57.306 36.000 5.68 0.00 42.39 3.51
2968 3034 8.359642 CAAATCTAAGACAAGAATTTTGGGACA 58.640 33.333 5.68 0.00 28.49 4.02
2969 3035 8.360390 ACAAATCTAAGACAAGAATTTTGGGAC 58.640 33.333 0.00 0.00 33.04 4.46
2970 3036 8.477419 ACAAATCTAAGACAAGAATTTTGGGA 57.523 30.769 0.00 0.00 33.04 4.37
2971 3037 8.579863 AGACAAATCTAAGACAAGAATTTTGGG 58.420 33.333 0.00 0.00 33.04 4.12
3016 3082 9.647797 ACAGATGTATCAAGTCACGTTTTAATA 57.352 29.630 0.00 0.00 0.00 0.98
3017 3083 8.547967 ACAGATGTATCAAGTCACGTTTTAAT 57.452 30.769 0.00 0.00 0.00 1.40
3018 3084 7.956420 ACAGATGTATCAAGTCACGTTTTAA 57.044 32.000 0.00 0.00 0.00 1.52
3019 3085 9.647797 AATACAGATGTATCAAGTCACGTTTTA 57.352 29.630 5.97 0.00 40.10 1.52
3020 3086 8.547967 AATACAGATGTATCAAGTCACGTTTT 57.452 30.769 5.97 0.00 40.10 2.43
3021 3087 8.547967 AAATACAGATGTATCAAGTCACGTTT 57.452 30.769 5.97 0.00 40.10 3.60
3022 3088 9.302345 CTAAATACAGATGTATCAAGTCACGTT 57.698 33.333 5.97 0.00 40.10 3.99
3023 3089 8.683615 TCTAAATACAGATGTATCAAGTCACGT 58.316 33.333 5.97 0.00 40.10 4.49
3024 3090 8.959058 GTCTAAATACAGATGTATCAAGTCACG 58.041 37.037 5.97 0.00 40.10 4.35
3025 3091 9.803315 TGTCTAAATACAGATGTATCAAGTCAC 57.197 33.333 5.97 3.82 40.10 3.67
3047 3113 8.579863 CCCAAAATTCTTGTCTTAGATTTGTCT 58.420 33.333 0.00 0.00 28.79 3.41
3048 3114 8.576442 TCCCAAAATTCTTGTCTTAGATTTGTC 58.424 33.333 0.00 0.00 28.79 3.18
3049 3115 8.360390 GTCCCAAAATTCTTGTCTTAGATTTGT 58.640 33.333 0.00 0.00 28.79 2.83
3050 3116 7.538678 CGTCCCAAAATTCTTGTCTTAGATTTG 59.461 37.037 0.00 0.00 29.84 2.32
3051 3117 7.309194 CCGTCCCAAAATTCTTGTCTTAGATTT 60.309 37.037 0.00 0.00 0.00 2.17
3052 3118 6.151144 CCGTCCCAAAATTCTTGTCTTAGATT 59.849 38.462 0.00 0.00 0.00 2.40
3053 3119 5.648092 CCGTCCCAAAATTCTTGTCTTAGAT 59.352 40.000 0.00 0.00 0.00 1.98
3054 3120 5.001232 CCGTCCCAAAATTCTTGTCTTAGA 58.999 41.667 0.00 0.00 0.00 2.10
3055 3121 5.001232 TCCGTCCCAAAATTCTTGTCTTAG 58.999 41.667 0.00 0.00 0.00 2.18
3056 3122 4.975631 TCCGTCCCAAAATTCTTGTCTTA 58.024 39.130 0.00 0.00 0.00 2.10
3057 3123 3.821033 CTCCGTCCCAAAATTCTTGTCTT 59.179 43.478 0.00 0.00 0.00 3.01
3058 3124 3.412386 CTCCGTCCCAAAATTCTTGTCT 58.588 45.455 0.00 0.00 0.00 3.41
3059 3125 2.488153 CCTCCGTCCCAAAATTCTTGTC 59.512 50.000 0.00 0.00 0.00 3.18
3060 3126 2.514803 CCTCCGTCCCAAAATTCTTGT 58.485 47.619 0.00 0.00 0.00 3.16
3061 3127 1.818674 CCCTCCGTCCCAAAATTCTTG 59.181 52.381 0.00 0.00 0.00 3.02
3062 3128 1.708551 TCCCTCCGTCCCAAAATTCTT 59.291 47.619 0.00 0.00 0.00 2.52
3063 3129 1.282157 CTCCCTCCGTCCCAAAATTCT 59.718 52.381 0.00 0.00 0.00 2.40
3064 3130 1.004394 ACTCCCTCCGTCCCAAAATTC 59.996 52.381 0.00 0.00 0.00 2.17
3065 3131 1.073098 ACTCCCTCCGTCCCAAAATT 58.927 50.000 0.00 0.00 0.00 1.82
3066 3132 1.961133 TACTCCCTCCGTCCCAAAAT 58.039 50.000 0.00 0.00 0.00 1.82
3067 3133 1.961133 ATACTCCCTCCGTCCCAAAA 58.039 50.000 0.00 0.00 0.00 2.44
3068 3134 2.852714 TATACTCCCTCCGTCCCAAA 57.147 50.000 0.00 0.00 0.00 3.28
3069 3135 4.413760 CTTATATACTCCCTCCGTCCCAA 58.586 47.826 0.00 0.00 0.00 4.12
3070 3136 3.816842 GCTTATATACTCCCTCCGTCCCA 60.817 52.174 0.00 0.00 0.00 4.37
3071 3137 2.759535 GCTTATATACTCCCTCCGTCCC 59.240 54.545 0.00 0.00 0.00 4.46
3072 3138 3.428532 TGCTTATATACTCCCTCCGTCC 58.571 50.000 0.00 0.00 0.00 4.79
3073 3139 4.678309 GCATGCTTATATACTCCCTCCGTC 60.678 50.000 11.37 0.00 0.00 4.79
3074 3140 3.195825 GCATGCTTATATACTCCCTCCGT 59.804 47.826 11.37 0.00 0.00 4.69
3075 3141 3.449018 AGCATGCTTATATACTCCCTCCG 59.551 47.826 16.30 0.00 0.00 4.63
3076 3142 4.383552 CCAGCATGCTTATATACTCCCTCC 60.384 50.000 19.98 0.00 31.97 4.30
3077 3143 4.764172 CCAGCATGCTTATATACTCCCTC 58.236 47.826 19.98 0.00 31.97 4.30
3078 3144 3.054802 GCCAGCATGCTTATATACTCCCT 60.055 47.826 19.98 0.00 31.97 4.20
3079 3145 3.054802 AGCCAGCATGCTTATATACTCCC 60.055 47.826 19.98 0.00 38.85 4.30
3080 3146 4.213564 AGCCAGCATGCTTATATACTCC 57.786 45.455 19.98 0.00 38.85 3.85
3081 3147 6.876257 AGTTTAGCCAGCATGCTTATATACTC 59.124 38.462 19.98 5.75 42.75 2.59
3082 3148 6.773638 AGTTTAGCCAGCATGCTTATATACT 58.226 36.000 19.98 16.77 42.75 2.12
3083 3149 7.440523 AAGTTTAGCCAGCATGCTTATATAC 57.559 36.000 19.98 14.96 42.75 1.47
3084 3150 9.166173 CATAAGTTTAGCCAGCATGCTTATATA 57.834 33.333 19.98 6.03 42.75 0.86
3085 3151 7.884877 TCATAAGTTTAGCCAGCATGCTTATAT 59.115 33.333 19.98 7.09 42.75 0.86
3130 3196 8.502387 CACAAACAAATCCTTCAGAAACAAAAA 58.498 29.630 0.00 0.00 0.00 1.94
3226 3292 1.341156 ACCTATCCACAGCCTCTGCC 61.341 60.000 0.00 0.00 38.69 4.85
3236 3302 3.054361 AGGGAACATGTTCACCTATCCAC 60.054 47.826 32.26 15.24 43.80 4.02
3270 3336 6.817140 CAGTTAGTCATTACTCAACCCTTACC 59.183 42.308 0.00 0.00 37.15 2.85
3339 3405 8.635877 AACAATCTCGAGTTCTCAACATATAC 57.364 34.615 13.13 0.00 0.00 1.47
3355 3421 3.307242 GCACCAGCTAACTAACAATCTCG 59.693 47.826 0.00 0.00 37.91 4.04
3393 3459 3.431856 CGTAATGAACTGCACGCTACTA 58.568 45.455 0.00 0.00 0.00 1.82
3394 3460 2.259618 CGTAATGAACTGCACGCTACT 58.740 47.619 0.00 0.00 0.00 2.57
3395 3461 1.323534 CCGTAATGAACTGCACGCTAC 59.676 52.381 0.00 0.00 33.19 3.58
3396 3462 1.635844 CCGTAATGAACTGCACGCTA 58.364 50.000 0.00 0.00 33.19 4.26
3397 3463 1.019278 CCCGTAATGAACTGCACGCT 61.019 55.000 0.00 0.00 33.19 5.07
3398 3464 1.017177 TCCCGTAATGAACTGCACGC 61.017 55.000 0.00 0.00 33.19 5.34
3399 3465 0.999406 CTCCCGTAATGAACTGCACG 59.001 55.000 0.00 0.00 0.00 5.34
3414 3482 4.888038 AAACAAGTAAACACGAACTCCC 57.112 40.909 0.00 0.00 0.00 4.30
3418 3486 7.426169 ACGACAAATAAACAAGTAAACACGAAC 59.574 33.333 0.00 0.00 0.00 3.95
3462 3530 5.087323 GGTAGTCTCCCTCCATATTCATCA 58.913 45.833 0.00 0.00 0.00 3.07
3463 3531 5.087323 TGGTAGTCTCCCTCCATATTCATC 58.913 45.833 0.00 0.00 0.00 2.92
3638 3709 8.716909 CGGCATTGTTTAACCAAAGAATTTTAT 58.283 29.630 0.00 0.00 35.93 1.40
3690 3761 5.575957 CAAAATTGTCCAGGAAGATGATCG 58.424 41.667 0.00 0.00 0.00 3.69
3711 3782 0.890542 ACAGCTGCGATTCCTTGCAA 60.891 50.000 15.27 0.00 41.30 4.08
3713 3784 1.136147 CACAGCTGCGATTCCTTGC 59.864 57.895 15.27 0.00 0.00 4.01
3714 3785 1.725641 TACACAGCTGCGATTCCTTG 58.274 50.000 15.27 4.24 0.00 3.61
3715 3786 2.076863 GTTACACAGCTGCGATTCCTT 58.923 47.619 15.27 0.00 0.00 3.36
3723 3797 7.596749 TTCTCTTAATAAGTTACACAGCTGC 57.403 36.000 15.27 0.00 0.00 5.25
3742 3816 8.762645 TCACATGGTAGACAGATAAAATTCTCT 58.237 33.333 0.00 0.00 0.00 3.10
3744 3818 9.334947 CATCACATGGTAGACAGATAAAATTCT 57.665 33.333 0.00 0.00 0.00 2.40
3745 3819 9.113838 ACATCACATGGTAGACAGATAAAATTC 57.886 33.333 0.00 0.00 33.60 2.17
3748 3826 7.336679 CCAACATCACATGGTAGACAGATAAAA 59.663 37.037 0.00 0.00 33.60 1.52
3750 3828 6.348498 CCAACATCACATGGTAGACAGATAA 58.652 40.000 0.00 0.00 33.60 1.75
3762 3840 4.011698 TGACATCTTCCCAACATCACATG 58.988 43.478 0.00 0.00 0.00 3.21
3763 3841 4.305539 TGACATCTTCCCAACATCACAT 57.694 40.909 0.00 0.00 0.00 3.21
3766 3844 7.379059 AGTATATGACATCTTCCCAACATCA 57.621 36.000 0.00 0.00 0.00 3.07
3775 3853 6.334102 ACGAAGGGAGTATATGACATCTTC 57.666 41.667 0.00 0.00 32.24 2.87
3789 3867 1.755380 AGTATTTCCGGACGAAGGGAG 59.245 52.381 1.83 0.00 33.01 4.30
3790 3868 1.856629 AGTATTTCCGGACGAAGGGA 58.143 50.000 1.83 0.00 0.00 4.20
3791 3869 2.277084 CAAGTATTTCCGGACGAAGGG 58.723 52.381 1.83 0.00 0.00 3.95
3792 3870 2.928116 GACAAGTATTTCCGGACGAAGG 59.072 50.000 1.83 0.00 0.00 3.46
3793 3871 3.581755 TGACAAGTATTTCCGGACGAAG 58.418 45.455 1.83 0.00 0.00 3.79
3794 3872 3.663995 TGACAAGTATTTCCGGACGAA 57.336 42.857 1.83 0.00 0.00 3.85
3795 3873 3.880047 ATGACAAGTATTTCCGGACGA 57.120 42.857 1.83 0.00 0.00 4.20
3796 3874 3.930229 TCAATGACAAGTATTTCCGGACG 59.070 43.478 1.83 0.00 0.00 4.79
3797 3875 5.873179 TTCAATGACAAGTATTTCCGGAC 57.127 39.130 1.83 0.00 0.00 4.79
3798 3876 6.127758 CCATTTCAATGACAAGTATTTCCGGA 60.128 38.462 0.00 0.00 38.70 5.14
3799 3877 6.035843 CCATTTCAATGACAAGTATTTCCGG 58.964 40.000 0.00 0.00 38.70 5.14
3800 3878 6.851609 TCCATTTCAATGACAAGTATTTCCG 58.148 36.000 0.81 0.00 38.70 4.30
3801 3879 8.253113 ACATCCATTTCAATGACAAGTATTTCC 58.747 33.333 0.81 0.00 38.70 3.13
3805 3883 9.071276 GGATACATCCATTTCAATGACAAGTAT 57.929 33.333 3.26 4.50 46.38 2.12
3806 3884 8.450578 GGATACATCCATTTCAATGACAAGTA 57.549 34.615 3.26 0.37 46.38 2.24
3807 3885 7.338800 GGATACATCCATTTCAATGACAAGT 57.661 36.000 3.26 0.00 46.38 3.16
3826 3904 9.736023 GGAATTAGTTGTCATCAAAATGGATAC 57.264 33.333 0.00 0.00 35.20 2.24
3827 3905 9.473007 TGGAATTAGTTGTCATCAAAATGGATA 57.527 29.630 0.00 0.00 35.20 2.59
3828 3906 8.365060 TGGAATTAGTTGTCATCAAAATGGAT 57.635 30.769 0.00 0.00 35.20 3.41
3829 3907 7.669304 TCTGGAATTAGTTGTCATCAAAATGGA 59.331 33.333 0.00 0.00 35.20 3.41
3830 3908 7.829725 TCTGGAATTAGTTGTCATCAAAATGG 58.170 34.615 0.00 0.00 35.20 3.16
3831 3909 9.297586 CATCTGGAATTAGTTGTCATCAAAATG 57.702 33.333 0.00 0.00 35.20 2.32
3832 3910 8.472413 CCATCTGGAATTAGTTGTCATCAAAAT 58.528 33.333 0.00 0.00 37.39 1.82
3833 3911 7.669304 TCCATCTGGAATTAGTTGTCATCAAAA 59.331 33.333 0.00 0.00 42.18 2.44
3834 3912 7.174413 TCCATCTGGAATTAGTTGTCATCAAA 58.826 34.615 0.00 0.00 42.18 2.69
3835 3913 6.720309 TCCATCTGGAATTAGTTGTCATCAA 58.280 36.000 0.00 0.00 42.18 2.57
3836 3914 6.312141 TCCATCTGGAATTAGTTGTCATCA 57.688 37.500 0.00 0.00 42.18 3.07
3837 3915 5.762218 CCTCCATCTGGAATTAGTTGTCATC 59.238 44.000 0.00 0.00 44.91 2.92
3838 3916 5.398353 CCCTCCATCTGGAATTAGTTGTCAT 60.398 44.000 0.00 0.00 44.91 3.06
3839 3917 4.080356 CCCTCCATCTGGAATTAGTTGTCA 60.080 45.833 0.00 0.00 44.91 3.58
3840 3918 4.164221 TCCCTCCATCTGGAATTAGTTGTC 59.836 45.833 0.00 0.00 44.91 3.18
3841 3919 4.111577 TCCCTCCATCTGGAATTAGTTGT 58.888 43.478 0.00 0.00 44.91 3.32
3842 3920 4.164988 ACTCCCTCCATCTGGAATTAGTTG 59.835 45.833 0.00 0.00 44.91 3.16
3843 3921 4.375313 ACTCCCTCCATCTGGAATTAGTT 58.625 43.478 0.00 0.00 44.91 2.24
3844 3922 4.014273 ACTCCCTCCATCTGGAATTAGT 57.986 45.455 0.00 1.53 44.91 2.24
3845 3923 5.151454 AGTACTCCCTCCATCTGGAATTAG 58.849 45.833 0.00 0.95 44.91 1.73
3846 3924 5.157770 AGTACTCCCTCCATCTGGAATTA 57.842 43.478 0.00 0.00 44.91 1.40
3847 3925 4.014273 AGTACTCCCTCCATCTGGAATT 57.986 45.455 0.00 0.00 44.91 2.17
3848 3926 3.715648 AGTACTCCCTCCATCTGGAAT 57.284 47.619 0.00 0.00 44.91 3.01
3849 3927 4.620086 TTAGTACTCCCTCCATCTGGAA 57.380 45.455 0.00 0.00 44.91 3.53
3850 3928 4.834406 ATTAGTACTCCCTCCATCTGGA 57.166 45.455 0.00 0.00 43.08 3.86
3851 3929 5.366768 TCAAATTAGTACTCCCTCCATCTGG 59.633 44.000 0.00 0.00 0.00 3.86
3852 3930 6.485830 TCAAATTAGTACTCCCTCCATCTG 57.514 41.667 0.00 0.00 0.00 2.90
3853 3931 7.510675 TTTCAAATTAGTACTCCCTCCATCT 57.489 36.000 0.00 0.00 0.00 2.90
3854 3932 7.255277 GCATTTCAAATTAGTACTCCCTCCATC 60.255 40.741 0.00 0.00 0.00 3.51
3855 3933 6.547510 GCATTTCAAATTAGTACTCCCTCCAT 59.452 38.462 0.00 0.00 0.00 3.41
3856 3934 5.885912 GCATTTCAAATTAGTACTCCCTCCA 59.114 40.000 0.00 0.00 0.00 3.86
3857 3935 5.299531 GGCATTTCAAATTAGTACTCCCTCC 59.700 44.000 0.00 0.00 0.00 4.30
3858 3936 6.038714 CAGGCATTTCAAATTAGTACTCCCTC 59.961 42.308 0.00 0.00 0.00 4.30
3859 3937 5.888161 CAGGCATTTCAAATTAGTACTCCCT 59.112 40.000 0.00 0.00 0.00 4.20
3860 3938 5.885912 TCAGGCATTTCAAATTAGTACTCCC 59.114 40.000 0.00 0.00 0.00 4.30
3861 3939 7.519008 CGATCAGGCATTTCAAATTAGTACTCC 60.519 40.741 0.00 0.00 0.00 3.85
3862 3940 7.011482 ACGATCAGGCATTTCAAATTAGTACTC 59.989 37.037 0.00 0.00 0.00 2.59
3863 3941 6.823689 ACGATCAGGCATTTCAAATTAGTACT 59.176 34.615 0.00 0.00 0.00 2.73
3864 3942 7.016361 ACGATCAGGCATTTCAAATTAGTAC 57.984 36.000 0.00 0.00 0.00 2.73
3865 3943 6.260050 GGACGATCAGGCATTTCAAATTAGTA 59.740 38.462 0.00 0.00 0.00 1.82
3866 3944 5.066505 GGACGATCAGGCATTTCAAATTAGT 59.933 40.000 0.00 0.00 0.00 2.24
3867 3945 5.066375 TGGACGATCAGGCATTTCAAATTAG 59.934 40.000 0.00 0.00 0.00 1.73
3879 3957 1.071385 AGGATTGATGGACGATCAGGC 59.929 52.381 0.21 0.00 42.24 4.85
3880 3958 2.366590 TGAGGATTGATGGACGATCAGG 59.633 50.000 0.21 0.00 42.24 3.86
3895 3973 3.069016 TGCAACCGTATCGTAATGAGGAT 59.931 43.478 0.00 0.00 34.59 3.24
3931 4009 3.523547 TCGTACAACCCCGTGATTTATG 58.476 45.455 0.00 0.00 0.00 1.90
3932 4010 3.891422 TCGTACAACCCCGTGATTTAT 57.109 42.857 0.00 0.00 0.00 1.40
3933 4011 3.324993 GTTCGTACAACCCCGTGATTTA 58.675 45.455 0.00 0.00 0.00 1.40
3935 4013 1.799544 GTTCGTACAACCCCGTGATT 58.200 50.000 0.00 0.00 0.00 2.57
3936 4014 0.388907 CGTTCGTACAACCCCGTGAT 60.389 55.000 0.00 0.00 0.00 3.06
3940 4025 2.432972 CCCGTTCGTACAACCCCG 60.433 66.667 0.00 0.00 0.00 5.73
3947 4032 2.795389 GCACATCGCCCGTTCGTAC 61.795 63.158 0.00 0.00 32.94 3.67
3992 4077 1.708027 GATTTGGACGAAGCGACGG 59.292 57.895 9.92 0.00 37.61 4.79
3994 4079 1.058903 GCGATTTGGACGAAGCGAC 59.941 57.895 13.50 2.16 40.55 5.19
3998 4083 1.148310 ACACTGCGATTTGGACGAAG 58.852 50.000 0.00 0.00 41.59 3.79
4017 4103 1.597854 CCCTCGTGACTTGCTGCAA 60.598 57.895 15.16 15.16 0.00 4.08
4060 4160 2.739996 CGAAGCTCCATCCCTGGCT 61.740 63.158 0.00 0.00 42.80 4.75
4077 4225 1.396996 CCTCCGAAAATGCCTGTAACG 59.603 52.381 0.00 0.00 0.00 3.18
4092 4240 1.938657 ATCCATCGCTATCGCCTCCG 61.939 60.000 0.00 0.00 35.26 4.63
4093 4241 0.459237 CATCCATCGCTATCGCCTCC 60.459 60.000 0.00 0.00 35.26 4.30
4094 4242 0.459237 CCATCCATCGCTATCGCCTC 60.459 60.000 0.00 0.00 35.26 4.70
4095 4243 1.593787 CCATCCATCGCTATCGCCT 59.406 57.895 0.00 0.00 35.26 5.52
4096 4244 1.448540 CCCATCCATCGCTATCGCC 60.449 63.158 0.00 0.00 35.26 5.54
4097 4245 1.016130 CACCCATCCATCGCTATCGC 61.016 60.000 0.00 0.00 35.26 4.58
4098 4246 0.390340 CCACCCATCCATCGCTATCG 60.390 60.000 0.00 0.00 0.00 2.92
4099 4247 0.687354 ACCACCCATCCATCGCTATC 59.313 55.000 0.00 0.00 0.00 2.08
4100 4248 0.397941 CACCACCCATCCATCGCTAT 59.602 55.000 0.00 0.00 0.00 2.97
4101 4249 0.980754 ACACCACCCATCCATCGCTA 60.981 55.000 0.00 0.00 0.00 4.26
4159 4315 2.147387 AAGCACGTCCCCTCCTTGT 61.147 57.895 0.00 0.00 0.00 3.16
4353 4525 2.821366 GCTCACCATGGCTGACGG 60.821 66.667 13.04 5.57 0.00 4.79
4442 4617 2.105477 ACCAGAGCGCCTCATTATCAAT 59.895 45.455 2.29 0.00 32.06 2.57
4455 4630 1.132262 ACAACAACAACAACCAGAGCG 59.868 47.619 0.00 0.00 0.00 5.03
4461 4637 4.051922 TCACACAAACAACAACAACAACC 58.948 39.130 0.00 0.00 0.00 3.77
4603 4779 4.320456 ACCACCACCTGCTGCGAG 62.320 66.667 0.00 0.00 0.00 5.03


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.