Multiple sequence alignment - TraesCS2B01G429300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G429300 chr2B 100.000 4207 0 0 1 4207 616925791 616929997 0.000000e+00 7769.0
1 TraesCS2B01G429300 chr2B 83.440 779 90 28 3442 4207 767466873 767467625 0.000000e+00 688.0
2 TraesCS2B01G429300 chr2B 81.596 777 91 29 3410 4179 397606062 397605331 2.800000e-166 595.0
3 TraesCS2B01G429300 chr2D 89.407 2747 184 49 695 3409 523020914 523023585 0.000000e+00 3362.0
4 TraesCS2B01G429300 chr2D 83.333 288 33 8 288 563 523020594 523020878 6.980000e-63 252.0
5 TraesCS2B01G429300 chr2A 87.430 2689 223 61 695 3340 668218373 668220989 0.000000e+00 2987.0
6 TraesCS2B01G429300 chr2A 84.146 328 42 5 293 613 668218047 668218371 4.090000e-80 309.0
7 TraesCS2B01G429300 chr3D 86.556 781 73 24 3410 4179 507776335 507775576 0.000000e+00 832.0
8 TraesCS2B01G429300 chr4B 83.976 830 96 28 3398 4207 421705820 421705008 0.000000e+00 761.0
9 TraesCS2B01G429300 chr1A 84.487 780 89 21 3444 4207 505557316 505558079 0.000000e+00 741.0
10 TraesCS2B01G429300 chr1A 89.011 91 9 1 608 698 486586808 486586897 1.240000e-20 111.0
11 TraesCS2B01G429300 chr1A 90.476 84 4 3 612 693 122307231 122307312 1.600000e-19 108.0
12 TraesCS2B01G429300 chr5B 83.597 823 99 25 3399 4207 51865367 51864567 0.000000e+00 739.0
13 TraesCS2B01G429300 chr5B 82.472 793 101 27 3410 4188 123024179 123023411 0.000000e+00 660.0
14 TraesCS2B01G429300 chr7A 83.354 817 102 25 3399 4204 517574926 517575719 0.000000e+00 725.0
15 TraesCS2B01G429300 chr5A 92.060 403 25 7 3410 3809 338557504 338557106 1.020000e-155 560.0
16 TraesCS2B01G429300 chr5A 86.667 90 10 2 608 696 528368701 528368613 9.630000e-17 99.0
17 TraesCS2B01G429300 chr7D 83.808 562 66 19 3656 4207 591259767 591260313 1.040000e-140 510.0
18 TraesCS2B01G429300 chr7D 90.217 92 9 0 608 699 341623163 341623072 2.050000e-23 121.0
19 TraesCS2B01G429300 chr7D 89.130 92 10 0 608 699 341477078 341477169 9.560000e-22 115.0
20 TraesCS2B01G429300 chr7D 90.244 82 8 0 611 692 443416032 443416113 1.600000e-19 108.0
21 TraesCS2B01G429300 chr4A 92.308 91 7 0 609 699 253682192 253682282 3.410000e-26 130.0
22 TraesCS2B01G429300 chr4A 86.316 95 12 1 605 699 425960327 425960234 7.440000e-18 102.0
23 TraesCS2B01G429300 chr3B 91.954 87 5 1 610 696 809836888 809836804 2.050000e-23 121.0
24 TraesCS2B01G429300 chr3B 100.000 35 0 0 3 37 794983787 794983753 9.760000e-07 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G429300 chr2B 616925791 616929997 4206 False 7769 7769 100.000 1 4207 1 chr2B.!!$F1 4206
1 TraesCS2B01G429300 chr2B 767466873 767467625 752 False 688 688 83.440 3442 4207 1 chr2B.!!$F2 765
2 TraesCS2B01G429300 chr2B 397605331 397606062 731 True 595 595 81.596 3410 4179 1 chr2B.!!$R1 769
3 TraesCS2B01G429300 chr2D 523020594 523023585 2991 False 1807 3362 86.370 288 3409 2 chr2D.!!$F1 3121
4 TraesCS2B01G429300 chr2A 668218047 668220989 2942 False 1648 2987 85.788 293 3340 2 chr2A.!!$F1 3047
5 TraesCS2B01G429300 chr3D 507775576 507776335 759 True 832 832 86.556 3410 4179 1 chr3D.!!$R1 769
6 TraesCS2B01G429300 chr4B 421705008 421705820 812 True 761 761 83.976 3398 4207 1 chr4B.!!$R1 809
7 TraesCS2B01G429300 chr1A 505557316 505558079 763 False 741 741 84.487 3444 4207 1 chr1A.!!$F3 763
8 TraesCS2B01G429300 chr5B 51864567 51865367 800 True 739 739 83.597 3399 4207 1 chr5B.!!$R1 808
9 TraesCS2B01G429300 chr5B 123023411 123024179 768 True 660 660 82.472 3410 4188 1 chr5B.!!$R2 778
10 TraesCS2B01G429300 chr7A 517574926 517575719 793 False 725 725 83.354 3399 4204 1 chr7A.!!$F1 805
11 TraesCS2B01G429300 chr7D 591259767 591260313 546 False 510 510 83.808 3656 4207 1 chr7D.!!$F3 551

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
47 48 0.032117 GCCAGGGGAAAGGCCTTATT 60.032 55.0 20.84 3.21 45.18 1.40 F
753 786 0.035056 CCCCCTTTCAGCCAGTACAG 60.035 60.0 0.00 0.00 0.00 2.74 F
1047 1090 0.034089 GCACAGAAGGCCAGGGTTAT 60.034 55.0 5.01 0.00 0.00 1.89 F
2240 2315 0.038709 TTATGCGCCTTGTGTTTGCC 60.039 50.0 4.18 0.00 0.00 4.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1030 1073 0.034089 GCATAACCCTGGCCTTCTGT 60.034 55.000 3.32 0.0 0.00 3.41 R
2089 2143 1.525619 GGTTCTGTTGTCGGAGAAACG 59.474 52.381 0.00 0.0 39.69 3.60 R
2971 3053 1.623311 TGACATCGTCCACCAAGTCAT 59.377 47.619 0.00 0.0 31.72 3.06 R
4016 4138 0.257328 TTTGGCCTTGGTGTCAGTCA 59.743 50.000 3.32 0.0 0.00 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 4.078516 GTGGAACCCTAGCGCGGT 62.079 66.667 17.70 17.70 34.07 5.68
27 28 3.766691 TGGAACCCTAGCGCGGTC 61.767 66.667 16.92 0.00 31.48 4.79
28 29 4.867599 GGAACCCTAGCGCGGTCG 62.868 72.222 16.92 8.90 39.07 4.79
40 41 4.778143 CGGTCGCCAGGGGAAAGG 62.778 72.222 8.02 0.00 0.00 3.11
45 46 3.096357 GCCAGGGGAAAGGCCTTA 58.904 61.111 20.84 0.00 45.18 2.69
46 47 1.620818 GCCAGGGGAAAGGCCTTAT 59.379 57.895 20.84 9.26 45.18 1.73
47 48 0.032117 GCCAGGGGAAAGGCCTTATT 60.032 55.000 20.84 3.21 45.18 1.40
48 49 1.780503 CCAGGGGAAAGGCCTTATTG 58.219 55.000 20.84 12.31 36.66 1.90
49 50 1.689258 CCAGGGGAAAGGCCTTATTGG 60.689 57.143 20.84 17.15 36.66 3.16
69 70 2.863739 GCGAAATAGCCTTTGACCAAC 58.136 47.619 0.00 0.00 0.00 3.77
70 71 2.727916 GCGAAATAGCCTTTGACCAACG 60.728 50.000 0.00 0.00 0.00 4.10
71 72 2.482721 CGAAATAGCCTTTGACCAACGT 59.517 45.455 0.00 0.00 0.00 3.99
72 73 3.058501 CGAAATAGCCTTTGACCAACGTT 60.059 43.478 0.00 0.00 0.00 3.99
73 74 3.915437 AATAGCCTTTGACCAACGTTG 57.085 42.857 21.47 21.47 0.00 4.10
74 75 2.623878 TAGCCTTTGACCAACGTTGA 57.376 45.000 29.35 6.99 0.00 3.18
75 76 1.757682 AGCCTTTGACCAACGTTGAA 58.242 45.000 29.35 13.10 0.00 2.69
76 77 1.676006 AGCCTTTGACCAACGTTGAAG 59.324 47.619 29.35 21.93 0.00 3.02
77 78 1.269051 GCCTTTGACCAACGTTGAAGG 60.269 52.381 28.98 28.98 37.38 3.46
78 79 1.269051 CCTTTGACCAACGTTGAAGGC 60.269 52.381 29.35 16.20 31.59 4.35
79 80 0.378962 TTTGACCAACGTTGAAGGCG 59.621 50.000 29.35 14.34 0.00 5.52
80 81 2.054140 TTGACCAACGTTGAAGGCGC 62.054 55.000 29.35 0.00 0.00 6.53
81 82 3.249973 GACCAACGTTGAAGGCGCC 62.250 63.158 29.35 21.89 0.00 6.53
82 83 3.283684 CCAACGTTGAAGGCGCCA 61.284 61.111 31.54 4.59 0.00 5.69
83 84 2.252260 CAACGTTGAAGGCGCCAG 59.748 61.111 31.54 14.36 0.00 4.85
84 85 3.660111 AACGTTGAAGGCGCCAGC 61.660 61.111 31.54 20.45 44.18 4.85
87 88 4.090057 GTTGAAGGCGCCAGCGTC 62.090 66.667 31.54 19.76 46.35 5.19
93 94 2.258286 GGCGCCAGCGTCAAATTT 59.742 55.556 24.80 0.00 46.35 1.82
94 95 1.504446 GGCGCCAGCGTCAAATTTA 59.496 52.632 24.80 0.00 46.35 1.40
95 96 0.100503 GGCGCCAGCGTCAAATTTAT 59.899 50.000 24.80 0.00 46.35 1.40
96 97 1.469079 GGCGCCAGCGTCAAATTTATT 60.469 47.619 24.80 0.00 46.35 1.40
97 98 2.258755 GCGCCAGCGTCAAATTTATTT 58.741 42.857 14.22 0.00 42.09 1.40
98 99 3.430931 GCGCCAGCGTCAAATTTATTTA 58.569 40.909 14.22 0.00 42.09 1.40
99 100 4.041723 GCGCCAGCGTCAAATTTATTTAT 58.958 39.130 14.22 0.00 42.09 1.40
100 101 4.502645 GCGCCAGCGTCAAATTTATTTATT 59.497 37.500 14.22 0.00 42.09 1.40
101 102 5.005299 GCGCCAGCGTCAAATTTATTTATTT 59.995 36.000 14.22 0.00 42.09 1.40
102 103 6.454981 GCGCCAGCGTCAAATTTATTTATTTT 60.455 34.615 14.22 0.00 42.09 1.82
103 104 7.452231 CGCCAGCGTCAAATTTATTTATTTTT 58.548 30.769 3.35 0.00 34.35 1.94
104 105 8.587950 CGCCAGCGTCAAATTTATTTATTTTTA 58.412 29.630 3.35 0.00 34.35 1.52
105 106 9.900264 GCCAGCGTCAAATTTATTTATTTTTAG 57.100 29.630 0.00 0.00 0.00 1.85
107 108 9.900264 CAGCGTCAAATTTATTTATTTTTAGGC 57.100 29.630 0.00 0.00 0.00 3.93
108 109 8.803799 AGCGTCAAATTTATTTATTTTTAGGCG 58.196 29.630 0.00 0.00 32.49 5.52
109 110 7.577668 GCGTCAAATTTATTTATTTTTAGGCGC 59.422 33.333 0.00 0.00 36.01 6.53
110 111 8.053653 CGTCAAATTTATTTATTTTTAGGCGCC 58.946 33.333 21.89 21.89 0.00 6.53
111 112 8.053653 GTCAAATTTATTTATTTTTAGGCGCCG 58.946 33.333 23.20 0.00 0.00 6.46
112 113 7.222999 TCAAATTTATTTATTTTTAGGCGCCGG 59.777 33.333 23.20 0.00 0.00 6.13
113 114 5.831702 TTTATTTATTTTTAGGCGCCGGA 57.168 34.783 23.20 10.93 0.00 5.14
114 115 3.703286 ATTTATTTTTAGGCGCCGGAC 57.297 42.857 23.20 0.00 0.00 4.79
115 116 2.110901 TTATTTTTAGGCGCCGGACA 57.889 45.000 23.20 5.74 0.00 4.02
116 117 1.371595 TATTTTTAGGCGCCGGACAC 58.628 50.000 23.20 0.00 0.00 3.67
117 118 0.606944 ATTTTTAGGCGCCGGACACA 60.607 50.000 23.20 5.14 0.00 3.72
118 119 1.508808 TTTTTAGGCGCCGGACACAC 61.509 55.000 23.20 0.00 0.00 3.82
119 120 2.386064 TTTTAGGCGCCGGACACACT 62.386 55.000 23.20 2.71 0.00 3.55
120 121 1.534336 TTTAGGCGCCGGACACACTA 61.534 55.000 23.20 1.52 0.00 2.74
121 122 1.324740 TTAGGCGCCGGACACACTAT 61.325 55.000 23.20 0.95 0.00 2.12
122 123 2.011741 TAGGCGCCGGACACACTATG 62.012 60.000 23.20 0.00 0.00 2.23
123 124 3.564027 GCGCCGGACACACTATGC 61.564 66.667 5.05 0.00 0.00 3.14
124 125 2.184322 CGCCGGACACACTATGCT 59.816 61.111 5.05 0.00 0.00 3.79
125 126 1.447838 CGCCGGACACACTATGCTT 60.448 57.895 5.05 0.00 0.00 3.91
126 127 0.179121 CGCCGGACACACTATGCTTA 60.179 55.000 5.05 0.00 0.00 3.09
127 128 1.571919 GCCGGACACACTATGCTTAG 58.428 55.000 5.05 5.13 0.00 2.18
128 129 1.136305 GCCGGACACACTATGCTTAGA 59.864 52.381 5.05 0.00 0.00 2.10
129 130 2.418197 GCCGGACACACTATGCTTAGAA 60.418 50.000 5.05 0.00 0.00 2.10
130 131 3.741388 GCCGGACACACTATGCTTAGAAT 60.741 47.826 5.05 0.00 0.00 2.40
131 132 4.051922 CCGGACACACTATGCTTAGAATC 58.948 47.826 13.22 5.09 0.00 2.52
132 133 4.441495 CCGGACACACTATGCTTAGAATCA 60.441 45.833 13.22 0.00 0.00 2.57
133 134 4.504461 CGGACACACTATGCTTAGAATCAC 59.496 45.833 13.22 2.61 0.00 3.06
134 135 4.504461 GGACACACTATGCTTAGAATCACG 59.496 45.833 13.22 0.00 0.00 4.35
135 136 4.433615 ACACACTATGCTTAGAATCACGG 58.566 43.478 13.22 0.00 0.00 4.94
136 137 3.804325 CACACTATGCTTAGAATCACGGG 59.196 47.826 13.22 0.00 0.00 5.28
137 138 2.802816 CACTATGCTTAGAATCACGGGC 59.197 50.000 13.22 0.00 0.00 6.13
138 139 2.224305 ACTATGCTTAGAATCACGGGCC 60.224 50.000 13.22 0.00 0.00 5.80
139 140 0.546122 ATGCTTAGAATCACGGGCCA 59.454 50.000 4.39 0.00 0.00 5.36
140 141 0.392461 TGCTTAGAATCACGGGCCAC 60.392 55.000 4.39 0.00 0.00 5.01
150 151 4.308458 CGGGCCACGTGAACCTCA 62.308 66.667 19.30 0.00 37.93 3.86
151 152 2.112297 GGGCCACGTGAACCTCAA 59.888 61.111 19.30 0.00 0.00 3.02
152 153 1.303317 GGGCCACGTGAACCTCAAT 60.303 57.895 19.30 0.00 0.00 2.57
153 154 1.586154 GGGCCACGTGAACCTCAATG 61.586 60.000 19.30 0.00 0.00 2.82
154 155 1.210155 GCCACGTGAACCTCAATGC 59.790 57.895 19.30 4.33 0.00 3.56
155 156 1.875963 CCACGTGAACCTCAATGCC 59.124 57.895 19.30 0.00 0.00 4.40
156 157 1.586154 CCACGTGAACCTCAATGCCC 61.586 60.000 19.30 0.00 0.00 5.36
157 158 0.888736 CACGTGAACCTCAATGCCCA 60.889 55.000 10.90 0.00 0.00 5.36
158 159 0.179004 ACGTGAACCTCAATGCCCAA 60.179 50.000 0.00 0.00 0.00 4.12
159 160 0.240945 CGTGAACCTCAATGCCCAAC 59.759 55.000 0.00 0.00 0.00 3.77
160 161 0.603065 GTGAACCTCAATGCCCAACC 59.397 55.000 0.00 0.00 0.00 3.77
161 162 0.541764 TGAACCTCAATGCCCAACCC 60.542 55.000 0.00 0.00 0.00 4.11
162 163 1.595093 GAACCTCAATGCCCAACCCG 61.595 60.000 0.00 0.00 0.00 5.28
163 164 2.035626 CCTCAATGCCCAACCCGT 59.964 61.111 0.00 0.00 0.00 5.28
164 165 1.301623 CCTCAATGCCCAACCCGTA 59.698 57.895 0.00 0.00 0.00 4.02
165 166 0.748005 CCTCAATGCCCAACCCGTAG 60.748 60.000 0.00 0.00 0.00 3.51
166 167 0.035439 CTCAATGCCCAACCCGTAGT 60.035 55.000 0.00 0.00 0.00 2.73
167 168 1.208535 CTCAATGCCCAACCCGTAGTA 59.791 52.381 0.00 0.00 0.00 1.82
168 169 1.065998 TCAATGCCCAACCCGTAGTAC 60.066 52.381 0.00 0.00 0.00 2.73
169 170 0.985760 AATGCCCAACCCGTAGTACA 59.014 50.000 0.38 0.00 0.00 2.90
170 171 0.985760 ATGCCCAACCCGTAGTACAA 59.014 50.000 0.38 0.00 0.00 2.41
171 172 0.322322 TGCCCAACCCGTAGTACAAG 59.678 55.000 0.38 0.00 0.00 3.16
172 173 0.609662 GCCCAACCCGTAGTACAAGA 59.390 55.000 0.38 0.00 0.00 3.02
173 174 1.002315 GCCCAACCCGTAGTACAAGAA 59.998 52.381 0.38 0.00 0.00 2.52
174 175 2.550639 GCCCAACCCGTAGTACAAGAAA 60.551 50.000 0.38 0.00 0.00 2.52
175 176 3.742385 CCCAACCCGTAGTACAAGAAAA 58.258 45.455 0.38 0.00 0.00 2.29
176 177 3.749609 CCCAACCCGTAGTACAAGAAAAG 59.250 47.826 0.38 0.00 0.00 2.27
177 178 3.187842 CCAACCCGTAGTACAAGAAAAGC 59.812 47.826 0.38 0.00 0.00 3.51
178 179 3.049708 ACCCGTAGTACAAGAAAAGCC 57.950 47.619 0.38 0.00 0.00 4.35
179 180 2.289882 ACCCGTAGTACAAGAAAAGCCC 60.290 50.000 0.38 0.00 0.00 5.19
180 181 2.289819 CCCGTAGTACAAGAAAAGCCCA 60.290 50.000 0.38 0.00 0.00 5.36
181 182 3.404899 CCGTAGTACAAGAAAAGCCCAA 58.595 45.455 0.38 0.00 0.00 4.12
182 183 3.435671 CCGTAGTACAAGAAAAGCCCAAG 59.564 47.826 0.38 0.00 0.00 3.61
183 184 3.435671 CGTAGTACAAGAAAAGCCCAAGG 59.564 47.826 0.38 0.00 0.00 3.61
184 185 3.876309 AGTACAAGAAAAGCCCAAGGA 57.124 42.857 0.00 0.00 0.00 3.36
185 186 3.487372 AGTACAAGAAAAGCCCAAGGAC 58.513 45.455 0.00 0.00 0.00 3.85
186 187 1.318576 ACAAGAAAAGCCCAAGGACG 58.681 50.000 0.00 0.00 0.00 4.79
187 188 1.133915 ACAAGAAAAGCCCAAGGACGA 60.134 47.619 0.00 0.00 0.00 4.20
188 189 1.953686 CAAGAAAAGCCCAAGGACGAA 59.046 47.619 0.00 0.00 0.00 3.85
189 190 1.897560 AGAAAAGCCCAAGGACGAAG 58.102 50.000 0.00 0.00 0.00 3.79
190 191 1.420138 AGAAAAGCCCAAGGACGAAGA 59.580 47.619 0.00 0.00 0.00 2.87
191 192 1.535896 GAAAAGCCCAAGGACGAAGAC 59.464 52.381 0.00 0.00 0.00 3.01
192 193 0.765510 AAAGCCCAAGGACGAAGACT 59.234 50.000 0.00 0.00 0.00 3.24
193 194 1.640917 AAGCCCAAGGACGAAGACTA 58.359 50.000 0.00 0.00 0.00 2.59
194 195 1.640917 AGCCCAAGGACGAAGACTAA 58.359 50.000 0.00 0.00 0.00 2.24
195 196 1.550976 AGCCCAAGGACGAAGACTAAG 59.449 52.381 0.00 0.00 0.00 2.18
196 197 1.275573 GCCCAAGGACGAAGACTAAGT 59.724 52.381 0.00 0.00 0.00 2.24
197 198 2.674462 GCCCAAGGACGAAGACTAAGTC 60.674 54.545 0.00 2.57 0.00 3.01
203 204 2.608268 GACGAAGACTAAGTCCAAGCC 58.392 52.381 0.00 0.00 32.18 4.35
204 205 1.275573 ACGAAGACTAAGTCCAAGCCC 59.724 52.381 0.00 0.00 32.18 5.19
205 206 1.275291 CGAAGACTAAGTCCAAGCCCA 59.725 52.381 0.00 0.00 32.18 5.36
206 207 2.289444 CGAAGACTAAGTCCAAGCCCAA 60.289 50.000 0.00 0.00 32.18 4.12
207 208 3.339141 GAAGACTAAGTCCAAGCCCAAG 58.661 50.000 0.00 0.00 32.18 3.61
208 209 1.630878 AGACTAAGTCCAAGCCCAAGG 59.369 52.381 0.00 0.00 32.18 3.61
209 210 4.271997 AGACTAAGTCCAAGCCCAAGGC 62.272 54.545 0.00 0.00 40.40 4.35
225 226 3.733960 GCCTGCCGGACCGAAAAC 61.734 66.667 17.49 2.17 0.00 2.43
226 227 2.281208 CCTGCCGGACCGAAAACA 60.281 61.111 17.49 7.07 0.00 2.83
227 228 2.325082 CCTGCCGGACCGAAAACAG 61.325 63.158 17.49 15.97 0.00 3.16
228 229 2.966309 CTGCCGGACCGAAAACAGC 61.966 63.158 17.49 9.66 0.00 4.40
229 230 3.733960 GCCGGACCGAAAACAGCC 61.734 66.667 17.49 0.00 0.00 4.85
230 231 2.032071 CCGGACCGAAAACAGCCT 59.968 61.111 17.49 0.00 0.00 4.58
231 232 1.294138 CCGGACCGAAAACAGCCTA 59.706 57.895 17.49 0.00 0.00 3.93
232 233 0.739813 CCGGACCGAAAACAGCCTAG 60.740 60.000 17.49 0.00 0.00 3.02
233 234 1.359459 CGGACCGAAAACAGCCTAGC 61.359 60.000 8.64 0.00 0.00 3.42
234 235 0.321298 GGACCGAAAACAGCCTAGCA 60.321 55.000 0.00 0.00 0.00 3.49
235 236 1.519408 GACCGAAAACAGCCTAGCAA 58.481 50.000 0.00 0.00 0.00 3.91
236 237 1.464997 GACCGAAAACAGCCTAGCAAG 59.535 52.381 0.00 0.00 0.00 4.01
237 238 1.071699 ACCGAAAACAGCCTAGCAAGA 59.928 47.619 0.00 0.00 0.00 3.02
238 239 1.734465 CCGAAAACAGCCTAGCAAGAG 59.266 52.381 0.00 0.00 0.00 2.85
239 240 1.734465 CGAAAACAGCCTAGCAAGAGG 59.266 52.381 0.00 0.00 39.88 3.69
247 248 2.849294 CCTAGCAAGAGGCCCTTATC 57.151 55.000 0.00 0.00 46.50 1.75
248 249 1.001406 CCTAGCAAGAGGCCCTTATCG 59.999 57.143 0.00 0.00 46.50 2.92
249 250 1.689273 CTAGCAAGAGGCCCTTATCGT 59.311 52.381 0.00 0.00 46.50 3.73
250 251 0.912486 AGCAAGAGGCCCTTATCGTT 59.088 50.000 0.00 0.00 46.50 3.85
251 252 1.282157 AGCAAGAGGCCCTTATCGTTT 59.718 47.619 0.00 0.00 46.50 3.60
252 253 2.092323 GCAAGAGGCCCTTATCGTTTT 58.908 47.619 0.00 0.00 36.11 2.43
253 254 2.159379 GCAAGAGGCCCTTATCGTTTTG 60.159 50.000 0.00 0.00 36.11 2.44
254 255 3.081804 CAAGAGGCCCTTATCGTTTTGT 58.918 45.455 0.00 0.00 32.86 2.83
255 256 2.987232 AGAGGCCCTTATCGTTTTGTC 58.013 47.619 0.00 0.00 0.00 3.18
256 257 2.572104 AGAGGCCCTTATCGTTTTGTCT 59.428 45.455 0.00 0.00 0.00 3.41
257 258 2.937149 GAGGCCCTTATCGTTTTGTCTC 59.063 50.000 0.00 0.00 0.00 3.36
258 259 2.304761 AGGCCCTTATCGTTTTGTCTCA 59.695 45.455 0.00 0.00 0.00 3.27
259 260 3.078837 GGCCCTTATCGTTTTGTCTCAA 58.921 45.455 0.00 0.00 0.00 3.02
260 261 3.504520 GGCCCTTATCGTTTTGTCTCAAA 59.495 43.478 0.00 0.00 0.00 2.69
261 262 4.379499 GGCCCTTATCGTTTTGTCTCAAAG 60.379 45.833 0.00 0.00 0.00 2.77
262 263 4.454504 GCCCTTATCGTTTTGTCTCAAAGA 59.545 41.667 0.00 0.00 0.00 2.52
263 264 5.048991 GCCCTTATCGTTTTGTCTCAAAGAA 60.049 40.000 0.00 0.00 0.00 2.52
264 265 6.514376 GCCCTTATCGTTTTGTCTCAAAGAAA 60.514 38.462 0.00 0.00 0.00 2.52
265 266 7.422399 CCCTTATCGTTTTGTCTCAAAGAAAA 58.578 34.615 0.00 0.00 0.00 2.29
266 267 7.918562 CCCTTATCGTTTTGTCTCAAAGAAAAA 59.081 33.333 0.00 0.00 32.49 1.94
285 286 4.320971 CGAGGCCCTTATCGTTCG 57.679 61.111 0.00 0.00 34.30 3.95
286 287 1.299926 CGAGGCCCTTATCGTTCGG 60.300 63.158 0.00 0.00 34.30 4.30
287 288 1.821258 GAGGCCCTTATCGTTCGGT 59.179 57.895 0.00 0.00 0.00 4.69
288 289 0.177373 GAGGCCCTTATCGTTCGGTT 59.823 55.000 0.00 0.00 0.00 4.44
289 290 0.107848 AGGCCCTTATCGTTCGGTTG 60.108 55.000 0.00 0.00 0.00 3.77
290 291 0.392060 GGCCCTTATCGTTCGGTTGT 60.392 55.000 0.00 0.00 0.00 3.32
291 292 1.004595 GCCCTTATCGTTCGGTTGTC 58.995 55.000 0.00 0.00 0.00 3.18
303 304 0.243636 CGGTTGTCCTGGATTTTGCC 59.756 55.000 0.00 0.00 0.00 4.52
306 307 1.546029 GTTGTCCTGGATTTTGCCCTC 59.454 52.381 0.00 0.00 0.00 4.30
356 358 2.239654 AGATTCCGCCTTCAAATCTCCA 59.760 45.455 0.00 0.00 35.37 3.86
360 362 1.032114 CGCCTTCAAATCTCCACCCC 61.032 60.000 0.00 0.00 0.00 4.95
363 365 1.635487 CCTTCAAATCTCCACCCCTCA 59.365 52.381 0.00 0.00 0.00 3.86
365 367 2.044793 TCAAATCTCCACCCCTCACT 57.955 50.000 0.00 0.00 0.00 3.41
366 368 2.348472 TCAAATCTCCACCCCTCACTT 58.652 47.619 0.00 0.00 0.00 3.16
367 369 2.040278 TCAAATCTCCACCCCTCACTTG 59.960 50.000 0.00 0.00 0.00 3.16
368 370 0.995024 AATCTCCACCCCTCACTTGG 59.005 55.000 0.00 0.00 0.00 3.61
369 371 0.119155 ATCTCCACCCCTCACTTGGA 59.881 55.000 0.00 0.00 37.07 3.53
370 372 0.104672 TCTCCACCCCTCACTTGGAA 60.105 55.000 0.00 0.00 38.97 3.53
371 373 0.036875 CTCCACCCCTCACTTGGAAC 59.963 60.000 0.00 0.00 38.97 3.62
372 374 1.074951 CCACCCCTCACTTGGAACC 59.925 63.158 0.00 0.00 31.39 3.62
376 380 1.068121 CCCCTCACTTGGAACCTCTT 58.932 55.000 0.00 0.00 0.00 2.85
385 389 3.055747 ACTTGGAACCTCTTCGAGATTCC 60.056 47.826 9.62 9.62 35.14 3.01
392 396 3.716539 CTTCGAGATTCCGCCCGCA 62.717 63.158 0.00 0.00 0.00 5.69
395 399 2.423446 GAGATTCCGCCCGCATCT 59.577 61.111 1.64 1.64 0.00 2.90
413 417 3.989600 TCTTCCATCAGATCCCTCTCT 57.010 47.619 0.00 0.00 0.00 3.10
418 422 2.040939 CATCAGATCCCTCTCTGCACT 58.959 52.381 0.00 0.00 42.00 4.40
420 424 3.609256 TCAGATCCCTCTCTGCACTAT 57.391 47.619 0.00 0.00 42.00 2.12
434 438 4.837298 TCTGCACTATATTCCTGCATCTCT 59.163 41.667 0.00 0.00 40.09 3.10
441 445 1.266178 TTCCTGCATCTCTTCGTCCA 58.734 50.000 0.00 0.00 0.00 4.02
451 455 3.728845 TCTCTTCGTCCAAACCTTCTTG 58.271 45.455 0.00 0.00 0.00 3.02
452 456 2.808543 CTCTTCGTCCAAACCTTCTTGG 59.191 50.000 0.00 0.00 46.27 3.61
493 497 4.219070 TGCTTTCTGCGGTAACTTCTACTA 59.781 41.667 0.00 0.00 46.63 1.82
495 499 4.708726 TTCTGCGGTAACTTCTACTACC 57.291 45.455 0.00 0.00 35.22 3.18
506 510 6.992063 AACTTCTACTACCGTCGATTCTTA 57.008 37.500 0.00 0.00 0.00 2.10
511 515 3.767278 ACTACCGTCGATTCTTACTTGC 58.233 45.455 0.00 0.00 0.00 4.01
526 534 1.589716 CTTGCCTGTACCAGCTTGCC 61.590 60.000 5.88 0.00 0.00 4.52
563 574 8.210946 AGTTTGCTAGTTATATGATTGCTGGTA 58.789 33.333 0.00 0.00 0.00 3.25
564 575 9.003658 GTTTGCTAGTTATATGATTGCTGGTAT 57.996 33.333 0.00 0.00 0.00 2.73
565 576 8.777865 TTGCTAGTTATATGATTGCTGGTATC 57.222 34.615 0.00 0.00 0.00 2.24
566 577 8.138928 TGCTAGTTATATGATTGCTGGTATCT 57.861 34.615 0.00 0.00 0.00 1.98
567 578 8.037166 TGCTAGTTATATGATTGCTGGTATCTG 58.963 37.037 0.00 0.00 0.00 2.90
568 579 7.010923 GCTAGTTATATGATTGCTGGTATCTGC 59.989 40.741 0.00 0.00 38.18 4.26
569 580 6.176183 AGTTATATGATTGCTGGTATCTGCC 58.824 40.000 2.05 0.00 37.08 4.85
570 581 2.283145 ATGATTGCTGGTATCTGCCC 57.717 50.000 2.05 0.00 37.08 5.36
571 582 1.216064 TGATTGCTGGTATCTGCCCT 58.784 50.000 2.05 0.00 37.08 5.19
572 583 1.134007 TGATTGCTGGTATCTGCCCTG 60.134 52.381 2.05 0.00 37.08 4.45
573 584 0.921896 ATTGCTGGTATCTGCCCTGT 59.078 50.000 2.05 0.00 37.08 4.00
574 585 1.578897 TTGCTGGTATCTGCCCTGTA 58.421 50.000 2.05 0.00 37.08 2.74
575 586 1.578897 TGCTGGTATCTGCCCTGTAA 58.421 50.000 2.05 0.00 37.08 2.41
576 587 1.912731 TGCTGGTATCTGCCCTGTAAA 59.087 47.619 2.05 0.00 37.08 2.01
577 588 2.509548 TGCTGGTATCTGCCCTGTAAAT 59.490 45.455 2.05 0.00 37.08 1.40
578 589 2.880890 GCTGGTATCTGCCCTGTAAATG 59.119 50.000 0.00 0.00 32.58 2.32
579 590 3.433598 GCTGGTATCTGCCCTGTAAATGA 60.434 47.826 0.00 0.00 32.58 2.57
583 610 5.593909 TGGTATCTGCCCTGTAAATGATTTG 59.406 40.000 0.00 0.00 0.00 2.32
586 613 3.696051 TCTGCCCTGTAAATGATTTGCTC 59.304 43.478 7.48 0.00 0.00 4.26
589 616 3.316308 GCCCTGTAAATGATTTGCTCGAT 59.684 43.478 7.48 0.00 0.00 3.59
593 620 6.483307 CCCTGTAAATGATTTGCTCGATTAGA 59.517 38.462 7.48 0.00 0.00 2.10
594 621 7.348201 CCTGTAAATGATTTGCTCGATTAGAC 58.652 38.462 7.48 0.00 0.00 2.59
617 644 8.422566 AGACAGTTAAATTAGCATACTACTCCC 58.577 37.037 0.00 0.00 0.00 4.30
618 645 8.320338 ACAGTTAAATTAGCATACTACTCCCT 57.680 34.615 0.00 0.00 0.00 4.20
619 646 8.422566 ACAGTTAAATTAGCATACTACTCCCTC 58.577 37.037 0.00 0.00 0.00 4.30
620 647 7.873505 CAGTTAAATTAGCATACTACTCCCTCC 59.126 40.741 0.00 0.00 0.00 4.30
621 648 5.470047 AAATTAGCATACTACTCCCTCCG 57.530 43.478 0.00 0.00 0.00 4.63
622 649 3.589951 TTAGCATACTACTCCCTCCGT 57.410 47.619 0.00 0.00 0.00 4.69
623 650 2.456073 AGCATACTACTCCCTCCGTT 57.544 50.000 0.00 0.00 0.00 4.44
624 651 2.308690 AGCATACTACTCCCTCCGTTC 58.691 52.381 0.00 0.00 0.00 3.95
625 652 1.340568 GCATACTACTCCCTCCGTTCC 59.659 57.143 0.00 0.00 0.00 3.62
626 653 2.662866 CATACTACTCCCTCCGTTCCA 58.337 52.381 0.00 0.00 0.00 3.53
627 654 3.231818 CATACTACTCCCTCCGTTCCAT 58.768 50.000 0.00 0.00 0.00 3.41
628 655 4.404640 CATACTACTCCCTCCGTTCCATA 58.595 47.826 0.00 0.00 0.00 2.74
629 656 3.393426 ACTACTCCCTCCGTTCCATAA 57.607 47.619 0.00 0.00 0.00 1.90
630 657 3.924922 ACTACTCCCTCCGTTCCATAAT 58.075 45.455 0.00 0.00 0.00 1.28
631 658 5.070823 ACTACTCCCTCCGTTCCATAATA 57.929 43.478 0.00 0.00 0.00 0.98
632 659 5.652324 ACTACTCCCTCCGTTCCATAATAT 58.348 41.667 0.00 0.00 0.00 1.28
633 660 6.797707 ACTACTCCCTCCGTTCCATAATATA 58.202 40.000 0.00 0.00 0.00 0.86
634 661 7.243824 ACTACTCCCTCCGTTCCATAATATAA 58.756 38.462 0.00 0.00 0.00 0.98
635 662 6.607004 ACTCCCTCCGTTCCATAATATAAG 57.393 41.667 0.00 0.00 0.00 1.73
636 663 5.046520 ACTCCCTCCGTTCCATAATATAAGC 60.047 44.000 0.00 0.00 0.00 3.09
637 664 4.081862 TCCCTCCGTTCCATAATATAAGCG 60.082 45.833 0.00 0.00 0.00 4.68
638 665 4.322499 CCCTCCGTTCCATAATATAAGCGT 60.322 45.833 0.00 0.00 0.00 5.07
639 666 4.625742 CCTCCGTTCCATAATATAAGCGTG 59.374 45.833 0.00 0.00 0.00 5.34
640 667 5.204409 TCCGTTCCATAATATAAGCGTGT 57.796 39.130 0.00 0.00 0.00 4.49
641 668 5.603596 TCCGTTCCATAATATAAGCGTGTT 58.396 37.500 0.00 0.00 0.00 3.32
642 669 6.050432 TCCGTTCCATAATATAAGCGTGTTT 58.950 36.000 0.00 0.00 0.00 2.83
643 670 6.539464 TCCGTTCCATAATATAAGCGTGTTTT 59.461 34.615 0.00 0.00 0.00 2.43
644 671 7.066043 TCCGTTCCATAATATAAGCGTGTTTTT 59.934 33.333 0.00 0.00 0.00 1.94
645 672 7.165154 CCGTTCCATAATATAAGCGTGTTTTTG 59.835 37.037 0.00 0.00 0.00 2.44
646 673 7.906010 CGTTCCATAATATAAGCGTGTTTTTGA 59.094 33.333 0.00 0.00 0.00 2.69
647 674 9.006215 GTTCCATAATATAAGCGTGTTTTTGAC 57.994 33.333 0.00 0.00 0.00 3.18
648 675 8.270080 TCCATAATATAAGCGTGTTTTTGACA 57.730 30.769 0.00 0.00 35.42 3.58
668 695 3.935450 CACTAGTGTGGTGTCAAAAACG 58.065 45.455 15.06 0.00 40.33 3.60
669 696 3.372822 CACTAGTGTGGTGTCAAAAACGT 59.627 43.478 15.06 0.00 40.33 3.99
670 697 4.004982 ACTAGTGTGGTGTCAAAAACGTT 58.995 39.130 0.00 0.00 0.00 3.99
671 698 3.481112 AGTGTGGTGTCAAAAACGTTC 57.519 42.857 0.00 0.00 0.00 3.95
672 699 3.078837 AGTGTGGTGTCAAAAACGTTCT 58.921 40.909 0.00 0.00 0.00 3.01
673 700 3.504520 AGTGTGGTGTCAAAAACGTTCTT 59.495 39.130 0.00 0.00 0.00 2.52
674 701 4.696402 AGTGTGGTGTCAAAAACGTTCTTA 59.304 37.500 0.00 0.00 0.00 2.10
675 702 5.355910 AGTGTGGTGTCAAAAACGTTCTTAT 59.644 36.000 0.00 0.00 0.00 1.73
676 703 6.539464 AGTGTGGTGTCAAAAACGTTCTTATA 59.461 34.615 0.00 0.00 0.00 0.98
677 704 6.849305 GTGTGGTGTCAAAAACGTTCTTATAG 59.151 38.462 0.00 0.00 0.00 1.31
678 705 6.539464 TGTGGTGTCAAAAACGTTCTTATAGT 59.461 34.615 0.00 0.00 0.00 2.12
679 706 7.710044 TGTGGTGTCAAAAACGTTCTTATAGTA 59.290 33.333 0.00 0.00 0.00 1.82
680 707 8.715088 GTGGTGTCAAAAACGTTCTTATAGTAT 58.285 33.333 0.00 0.00 0.00 2.12
681 708 8.714179 TGGTGTCAAAAACGTTCTTATAGTATG 58.286 33.333 0.00 0.00 0.00 2.39
682 709 8.173130 GGTGTCAAAAACGTTCTTATAGTATGG 58.827 37.037 0.00 0.00 0.00 2.74
683 710 8.173130 GTGTCAAAAACGTTCTTATAGTATGGG 58.827 37.037 0.00 0.00 0.00 4.00
684 711 8.095792 TGTCAAAAACGTTCTTATAGTATGGGA 58.904 33.333 0.00 0.00 0.00 4.37
685 712 9.106070 GTCAAAAACGTTCTTATAGTATGGGAT 57.894 33.333 0.00 0.00 0.00 3.85
686 713 9.104965 TCAAAAACGTTCTTATAGTATGGGATG 57.895 33.333 0.00 0.00 0.00 3.51
687 714 8.342634 CAAAAACGTTCTTATAGTATGGGATGG 58.657 37.037 0.00 0.00 0.00 3.51
688 715 6.989155 AACGTTCTTATAGTATGGGATGGA 57.011 37.500 0.00 0.00 0.00 3.41
689 716 6.591750 ACGTTCTTATAGTATGGGATGGAG 57.408 41.667 0.00 0.00 0.00 3.86
690 717 5.480772 ACGTTCTTATAGTATGGGATGGAGG 59.519 44.000 0.00 0.00 0.00 4.30
691 718 5.105310 CGTTCTTATAGTATGGGATGGAGGG 60.105 48.000 0.00 0.00 0.00 4.30
692 719 5.896530 TCTTATAGTATGGGATGGAGGGA 57.103 43.478 0.00 0.00 0.00 4.20
693 720 5.590818 TCTTATAGTATGGGATGGAGGGAC 58.409 45.833 0.00 0.00 0.00 4.46
703 730 4.044317 TGGGATGGAGGGACTAGTAGATAC 59.956 50.000 3.59 0.00 41.55 2.24
712 739 4.756135 GGGACTAGTAGATACGGTTCTCTG 59.244 50.000 3.59 0.00 0.00 3.35
739 768 9.782900 TTTATATTTCATTTCTTCTTTCCCCCT 57.217 29.630 0.00 0.00 0.00 4.79
753 786 0.035056 CCCCCTTTCAGCCAGTACAG 60.035 60.000 0.00 0.00 0.00 2.74
763 796 3.263170 TCAGCCAGTACAGCCAAGAAATA 59.737 43.478 4.43 0.00 0.00 1.40
764 797 4.009675 CAGCCAGTACAGCCAAGAAATAA 58.990 43.478 4.43 0.00 0.00 1.40
767 800 4.700213 GCCAGTACAGCCAAGAAATAAGAA 59.300 41.667 0.00 0.00 0.00 2.52
770 803 5.123979 CAGTACAGCCAAGAAATAAGAACCC 59.876 44.000 0.00 0.00 0.00 4.11
785 818 8.567285 AATAAGAACCCTGAATCACTAAACTG 57.433 34.615 0.00 0.00 0.00 3.16
788 821 4.993705 ACCCTGAATCACTAAACTGGAA 57.006 40.909 0.00 0.00 0.00 3.53
792 825 5.256474 CCTGAATCACTAAACTGGAACCAT 58.744 41.667 0.00 0.00 0.00 3.55
796 829 8.698973 TGAATCACTAAACTGGAACCATTTTA 57.301 30.769 13.13 13.13 32.44 1.52
801 834 9.757227 TCACTAAACTGGAACCATTTTAATTTG 57.243 29.630 14.18 11.93 33.05 2.32
802 835 9.757227 CACTAAACTGGAACCATTTTAATTTGA 57.243 29.630 14.18 0.00 33.05 2.69
840 874 8.360325 TGTAGTTATGGACGCTTTATATTGTG 57.640 34.615 0.00 0.00 0.00 3.33
843 877 4.552166 ATGGACGCTTTATATTGTGTGC 57.448 40.909 0.00 0.00 35.97 4.57
847 881 4.734854 GGACGCTTTATATTGTGTGCAATG 59.265 41.667 0.00 0.00 44.32 2.82
856 890 3.291809 TTGTGTGCAATGCATTCTGAG 57.708 42.857 12.38 0.00 41.91 3.35
865 899 4.659115 CAATGCATTCTGAGGGGATGATA 58.341 43.478 9.53 0.00 0.00 2.15
869 903 5.096521 TGCATTCTGAGGGGATGATATACT 58.903 41.667 0.00 0.00 0.00 2.12
874 908 9.480861 CATTCTGAGGGGATGATATACTTACTA 57.519 37.037 0.00 0.00 0.00 1.82
897 931 9.393512 ACTATAGTACTGTTTCAATCGTCTAGT 57.606 33.333 2.75 0.00 0.00 2.57
899 933 8.912787 ATAGTACTGTTTCAATCGTCTAGTTG 57.087 34.615 5.39 0.00 0.00 3.16
900 934 6.978338 AGTACTGTTTCAATCGTCTAGTTGA 58.022 36.000 0.00 0.00 32.86 3.18
901 935 7.603651 AGTACTGTTTCAATCGTCTAGTTGAT 58.396 34.615 0.00 0.00 34.60 2.57
902 936 8.088981 AGTACTGTTTCAATCGTCTAGTTGATT 58.911 33.333 0.00 6.44 34.60 2.57
903 937 7.730364 ACTGTTTCAATCGTCTAGTTGATTT 57.270 32.000 8.76 0.00 34.60 2.17
904 938 8.827177 ACTGTTTCAATCGTCTAGTTGATTTA 57.173 30.769 8.76 1.22 34.60 1.40
905 939 8.926710 ACTGTTTCAATCGTCTAGTTGATTTAG 58.073 33.333 8.76 4.42 34.60 1.85
906 940 8.827177 TGTTTCAATCGTCTAGTTGATTTAGT 57.173 30.769 8.76 0.00 34.60 2.24
907 941 9.917129 TGTTTCAATCGTCTAGTTGATTTAGTA 57.083 29.630 8.76 0.00 34.60 1.82
909 943 9.917129 TTTCAATCGTCTAGTTGATTTAGTACA 57.083 29.630 8.76 0.00 34.60 2.90
914 948 8.683550 TCGTCTAGTTGATTTAGTACACAATG 57.316 34.615 0.00 0.00 0.00 2.82
952 995 4.382345 TCAGCATCAGTGTATGAGTGAG 57.618 45.455 6.71 0.00 42.53 3.51
955 998 3.956848 AGCATCAGTGTATGAGTGAGCTA 59.043 43.478 6.71 0.00 42.53 3.32
979 1022 6.560003 AGGACAAGGTACATGATTGATGTA 57.440 37.500 0.00 0.00 43.96 2.29
990 1033 9.914131 GTACATGATTGATGTAGCTGATACTTA 57.086 33.333 0.00 0.00 46.23 2.24
1030 1073 0.035152 AGATGACGATGGCCAAAGCA 60.035 50.000 10.96 6.46 42.56 3.91
1038 1081 1.538687 ATGGCCAAAGCACAGAAGGC 61.539 55.000 10.96 0.00 44.48 4.35
1047 1090 0.034089 GCACAGAAGGCCAGGGTTAT 60.034 55.000 5.01 0.00 0.00 1.89
1059 1102 1.822186 GGGTTATGCCGCGGACATT 60.822 57.895 33.48 17.13 38.44 2.71
1081 1124 3.473647 CCATCAGGGAGGCGCAGA 61.474 66.667 10.83 0.00 40.01 4.26
1110 1153 1.419922 GCCATACGTGCACAAGACG 59.580 57.895 18.64 4.71 42.62 4.18
1116 1159 2.616330 CGTGCACAAGACGCCCATT 61.616 57.895 18.64 0.00 0.00 3.16
1128 1171 0.374758 CGCCCATTCTGTCATCAACG 59.625 55.000 0.00 0.00 0.00 4.10
1164 1207 1.683385 GCAGGGAAGCAGTTGTTCTTT 59.317 47.619 0.00 0.00 0.00 2.52
1188 1231 1.202915 TGTGAATGCTTCCAGAAGGCA 60.203 47.619 9.36 7.96 38.80 4.75
1209 1253 1.961394 TGAGAGTTACTGCCTCGTGTT 59.039 47.619 0.00 0.00 34.08 3.32
1216 1260 4.929808 AGTTACTGCCTCGTGTTCTATTTG 59.070 41.667 0.00 0.00 0.00 2.32
1224 1268 5.116180 CCTCGTGTTCTATTTGCCTATTCA 58.884 41.667 0.00 0.00 0.00 2.57
1228 1272 6.597672 TCGTGTTCTATTTGCCTATTCAATGT 59.402 34.615 0.00 0.00 0.00 2.71
1269 1313 6.527722 GCTAATTGTTGTGGACATATGTTGTG 59.472 38.462 10.30 0.00 39.18 3.33
1274 1319 5.126222 TGTTGTGGACATATGTTGTGTTGTT 59.874 36.000 10.30 0.00 39.18 2.83
1289 1334 1.071699 GTTGTTCTGTGTAGAGGGGCA 59.928 52.381 0.00 0.00 33.70 5.36
1298 1343 3.266772 TGTGTAGAGGGGCATTCAAGATT 59.733 43.478 0.00 0.00 0.00 2.40
1323 1368 5.221501 CGAGGGGCATCCAATTCAATATTTT 60.222 40.000 0.00 0.00 38.24 1.82
1340 1385 4.871933 ATTTTCCCTTGATGACAACCAC 57.128 40.909 0.00 0.00 32.27 4.16
1346 1391 1.514678 TTGATGACAACCACGCAGCC 61.515 55.000 0.00 0.00 0.00 4.85
1393 1438 4.286297 TGGTGCTAGCTTCAGTGTATTT 57.714 40.909 17.23 0.00 0.00 1.40
1402 1448 3.426525 GCTTCAGTGTATTTTGTGCTTGC 59.573 43.478 0.00 0.00 0.00 4.01
1457 1503 5.102953 TGATATGGTTTCTTCTCAGTGGG 57.897 43.478 0.00 0.00 0.00 4.61
1460 1506 3.208747 TGGTTTCTTCTCAGTGGGAAC 57.791 47.619 0.00 0.00 0.00 3.62
1727 1773 9.853921 CAAAGCTTTTATTGTTGAATTGTTCTC 57.146 29.630 9.53 0.00 0.00 2.87
1755 1801 7.738437 AATGTGACAAATATCCCCATTTTCT 57.262 32.000 0.00 0.00 0.00 2.52
1757 1803 5.356751 TGTGACAAATATCCCCATTTTCTCG 59.643 40.000 0.00 0.00 0.00 4.04
1766 1812 4.037927 TCCCCATTTTCTCGGAACTAGAT 58.962 43.478 0.00 0.00 27.78 1.98
1779 1826 8.322828 TCTCGGAACTAGATATGCTTCTATAGT 58.677 37.037 0.00 0.00 0.00 2.12
1793 1840 5.163913 GCTTCTATAGTGTGCTGACAGTTTG 60.164 44.000 3.99 0.00 37.01 2.93
1794 1841 5.468540 TCTATAGTGTGCTGACAGTTTGT 57.531 39.130 3.99 0.00 37.01 2.83
1796 1843 1.668419 AGTGTGCTGACAGTTTGTCC 58.332 50.000 3.99 0.00 46.40 4.02
1800 1847 2.017049 GTGCTGACAGTTTGTCCAAGT 58.983 47.619 3.99 0.00 46.40 3.16
1811 1858 9.167311 GACAGTTTGTCCAAGTTAGATGATAAT 57.833 33.333 0.00 0.00 41.37 1.28
1846 1895 6.433093 AGGTACCATAAACATTGTTTCTGGTC 59.567 38.462 36.17 28.92 38.96 4.02
1847 1896 6.433093 GGTACCATAAACATTGTTTCTGGTCT 59.567 38.462 36.17 24.16 38.96 3.85
1863 1917 3.614092 TGGTCTCGTATTTCGGTAGTCT 58.386 45.455 0.00 0.00 40.32 3.24
1881 1935 6.316890 GGTAGTCTTGAAGTAGTCCTAGTGAG 59.683 46.154 0.00 0.00 0.00 3.51
1896 1950 6.770746 CCTAGTGAGTAGGCTACTGTTTAA 57.229 41.667 30.75 11.57 42.28 1.52
1904 1958 4.946784 AGGCTACTGTTTAAATGCGAAG 57.053 40.909 0.00 0.00 0.00 3.79
1920 1974 4.882671 GCGAAGAATTAGCTGGAATTCA 57.117 40.909 19.37 0.00 44.77 2.57
1935 1989 8.193438 AGCTGGAATTCAAAATTAGAAGTATGC 58.807 33.333 7.93 0.00 0.00 3.14
2033 2087 3.629142 ACTTGATACTAACCCTGGCAC 57.371 47.619 0.00 0.00 0.00 5.01
2034 2088 2.910319 ACTTGATACTAACCCTGGCACA 59.090 45.455 0.00 0.00 0.00 4.57
2035 2089 3.270877 CTTGATACTAACCCTGGCACAC 58.729 50.000 0.00 0.00 0.00 3.82
2051 2105 4.278919 TGGCACACCATCATATTAGCAATG 59.721 41.667 0.00 0.00 42.67 2.82
2052 2106 4.232221 GCACACCATCATATTAGCAATGC 58.768 43.478 0.00 0.00 0.00 3.56
2054 2108 4.521639 CACACCATCATATTAGCAATGCCT 59.478 41.667 0.00 0.00 0.00 4.75
2115 2170 0.249741 CCGACAACAGAACCTTCGGT 60.250 55.000 0.12 0.00 43.46 4.69
2182 2254 7.042791 CCATTATTTCCACACACAAAACTTGAC 60.043 37.037 0.00 0.00 0.00 3.18
2229 2304 3.454371 TCTCCTAGTTTCTTATGCGCC 57.546 47.619 4.18 0.00 0.00 6.53
2240 2315 0.038709 TTATGCGCCTTGTGTTTGCC 60.039 50.000 4.18 0.00 0.00 4.52
2276 2351 7.060421 AGAGTAACTTGAGTTTTCATTTCCCA 58.940 34.615 1.20 0.00 39.31 4.37
2287 2362 7.748677 AGTTTTCATTTCCCATTGAATTTCCT 58.251 30.769 0.00 0.00 32.27 3.36
2334 2410 3.288092 GTTTTTCAGTGGTCAGGGAACT 58.712 45.455 0.00 0.00 46.44 3.01
2376 2452 0.811915 AAGTCCCTGAGATCGACACG 59.188 55.000 0.00 0.00 0.00 4.49
2424 2500 5.396057 ACTCTCTTAGCTTCTCCCTATCA 57.604 43.478 0.00 0.00 0.00 2.15
2472 2549 8.621286 GGAAGTCTTTTCTAATTTGACACTTGA 58.379 33.333 7.16 0.00 0.00 3.02
2473 2550 9.439537 GAAGTCTTTTCTAATTTGACACTTGAC 57.560 33.333 7.16 0.00 0.00 3.18
2475 2552 9.125026 AGTCTTTTCTAATTTGACACTTGACAT 57.875 29.630 0.00 0.00 0.00 3.06
2669 2746 2.230508 TGATGGACTACGAGCGTTTCTT 59.769 45.455 0.00 0.00 0.00 2.52
2691 2768 1.732259 GTGACTTGACATGGTAAGGCG 59.268 52.381 13.58 0.00 34.61 5.52
2698 2775 6.223852 ACTTGACATGGTAAGGCGAATATAG 58.776 40.000 13.58 0.00 0.00 1.31
2702 2779 8.129496 TGACATGGTAAGGCGAATATAGATTA 57.871 34.615 0.00 0.00 0.00 1.75
2728 2805 4.933505 TGTTTCCATCATTTTCTGCACA 57.066 36.364 0.00 0.00 0.00 4.57
2755 2832 7.016563 TGCATTACTGTCCTGGAATCATACTAT 59.983 37.037 0.00 0.00 0.00 2.12
2760 2837 6.776116 ACTGTCCTGGAATCATACTATAACGA 59.224 38.462 0.00 0.00 0.00 3.85
2761 2838 7.287005 ACTGTCCTGGAATCATACTATAACGAA 59.713 37.037 0.00 0.00 0.00 3.85
2762 2839 8.190326 TGTCCTGGAATCATACTATAACGAAT 57.810 34.615 0.00 0.00 0.00 3.34
2763 2840 9.304335 TGTCCTGGAATCATACTATAACGAATA 57.696 33.333 0.00 0.00 0.00 1.75
2920 3002 3.625764 TGTTTGCTAGTGGACAGAACAAC 59.374 43.478 0.00 0.00 0.00 3.32
2921 3003 2.543777 TGCTAGTGGACAGAACAACC 57.456 50.000 0.00 0.00 0.00 3.77
2922 3004 1.765904 TGCTAGTGGACAGAACAACCA 59.234 47.619 0.00 0.00 0.00 3.67
2939 3021 6.207691 ACAACCATATGAGGCATGTTTTAC 57.792 37.500 3.65 0.00 30.46 2.01
2971 3053 2.925706 TTCTAGGCCGGTGGTGCA 60.926 61.111 1.90 0.00 0.00 4.57
3041 3123 3.888583 TGCCATGAAGATGTGCTATGAA 58.111 40.909 0.00 0.00 30.96 2.57
3120 3202 1.229428 CGAGTTCAAGCAAAGCTCCA 58.771 50.000 0.00 0.00 38.25 3.86
3158 3240 5.826737 CAGCAAGATAGGGATCATTGTTTCT 59.173 40.000 0.00 0.00 34.17 2.52
3179 3261 2.351276 GGCAATGTGGACCTCCGT 59.649 61.111 0.00 0.00 39.43 4.69
3197 3279 1.204146 GTGTGCTCTGGGAATCCCTA 58.796 55.000 20.55 6.82 45.70 3.53
3212 3294 7.843760 TGGGAATCCCTATGTAAATGAAATTGT 59.156 33.333 20.55 0.00 45.70 2.71
3213 3295 8.704668 GGGAATCCCTATGTAAATGAAATTGTT 58.295 33.333 11.95 0.00 41.34 2.83
3218 3300 5.231991 CCTATGTAAATGAAATTGTTGCCGC 59.768 40.000 0.00 0.00 36.10 6.53
3251 3333 4.582701 TGAATTTGAAATGCACGAGGTT 57.417 36.364 0.00 0.00 0.00 3.50
3265 3347 1.009829 GAGGTTAATGGCTGCAGACG 58.990 55.000 20.43 0.00 0.00 4.18
3289 3371 6.572254 CGTGTAAAAACACCGATTTCTTACAG 59.428 38.462 3.25 0.00 37.33 2.74
3295 3377 3.326880 ACACCGATTTCTTACAGGGAACT 59.673 43.478 0.00 0.00 46.44 3.01
3374 3457 4.415596 ACCATTTGCCATTGACTTCCTAA 58.584 39.130 0.00 0.00 0.00 2.69
3382 3465 1.808411 TTGACTTCCTAAAGCGCCTG 58.192 50.000 2.29 0.00 35.81 4.85
3386 3469 2.165845 GACTTCCTAAAGCGCCTGAGTA 59.834 50.000 2.29 0.00 35.81 2.59
3404 3487 2.899900 AGTATGGAAGCGGCATATCTCA 59.100 45.455 1.45 0.00 0.00 3.27
3472 3555 1.131928 GTTGTGGGGGTCACTAGGGT 61.132 60.000 0.00 0.00 46.20 4.34
3473 3556 0.402272 TTGTGGGGGTCACTAGGGTT 60.402 55.000 0.00 0.00 46.20 4.11
3484 3569 0.470456 ACTAGGGTTCCCACACGTGA 60.470 55.000 25.01 0.00 0.00 4.35
3510 3597 9.797556 AGTGTGTTGTTTAGTTTTATTTCTTCC 57.202 29.630 0.00 0.00 0.00 3.46
3513 3600 9.244799 GTGTTGTTTAGTTTTATTTCTTCCCTG 57.755 33.333 0.00 0.00 0.00 4.45
3514 3601 8.973182 TGTTGTTTAGTTTTATTTCTTCCCTGT 58.027 29.630 0.00 0.00 0.00 4.00
3652 3757 6.149807 TGTGGATATTTTTAAGTTCACGGTCC 59.850 38.462 0.00 0.00 0.00 4.46
3654 3759 6.373216 TGGATATTTTTAAGTTCACGGTCCTG 59.627 38.462 0.00 0.00 0.00 3.86
3672 3777 7.094933 ACGGTCCTGTAAAGTTTGTGAATATTC 60.095 37.037 8.60 8.60 0.00 1.75
3719 3828 5.366460 TGCAAACATTTGTGAAACCATGAT 58.634 33.333 6.24 0.00 40.24 2.45
3907 4029 1.152567 CGAGAGGAGAGGGAGCCAT 60.153 63.158 0.00 0.00 0.00 4.40
4016 4138 1.145738 AGGCTCAAACAATCACCACCT 59.854 47.619 0.00 0.00 0.00 4.00
4049 4172 2.036346 AGGCCAAAATGTGCAAAGACTC 59.964 45.455 5.01 0.00 0.00 3.36
4179 4310 4.219033 CACAAAGCCGACACAGATAAAAC 58.781 43.478 0.00 0.00 0.00 2.43
4184 4315 3.502211 AGCCGACACAGATAAAACCAAAG 59.498 43.478 0.00 0.00 0.00 2.77
4195 4326 7.606073 ACAGATAAAACCAAAGCAAAACAACTT 59.394 29.630 0.00 0.00 0.00 2.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 1.339097 CTAGGGTTCCACCTATCCCG 58.661 60.000 0.00 0.00 42.03 5.14
3 4 0.680061 CGCTAGGGTTCCACCTATCC 59.320 60.000 0.00 0.00 42.03 2.59
4 5 0.033642 GCGCTAGGGTTCCACCTATC 59.966 60.000 8.77 0.00 42.03 2.08
5 6 1.745320 CGCGCTAGGGTTCCACCTAT 61.745 60.000 5.56 0.00 42.03 2.57
7 8 3.771160 CGCGCTAGGGTTCCACCT 61.771 66.667 5.56 0.00 44.75 4.00
8 9 4.832608 CCGCGCTAGGGTTCCACC 62.833 72.222 5.56 0.00 37.60 4.61
10 11 3.766691 GACCGCGCTAGGGTTCCA 61.767 66.667 5.56 0.00 38.07 3.53
11 12 4.867599 CGACCGCGCTAGGGTTCC 62.868 72.222 5.56 0.00 38.07 3.62
23 24 4.778143 CCTTTCCCCTGGCGACCG 62.778 72.222 0.00 0.00 0.00 4.79
29 30 1.689258 CCAATAAGGCCTTTCCCCTGG 60.689 57.143 26.08 18.07 34.51 4.45
30 31 1.780503 CCAATAAGGCCTTTCCCCTG 58.219 55.000 26.08 13.28 34.51 4.45
49 50 2.727916 CGTTGGTCAAAGGCTATTTCGC 60.728 50.000 0.00 0.00 0.00 4.70
50 51 2.482721 ACGTTGGTCAAAGGCTATTTCG 59.517 45.455 0.00 0.00 0.00 3.46
51 52 4.023536 TCAACGTTGGTCAAAGGCTATTTC 60.024 41.667 27.02 0.00 0.00 2.17
52 53 3.886505 TCAACGTTGGTCAAAGGCTATTT 59.113 39.130 27.02 0.00 0.00 1.40
53 54 3.482436 TCAACGTTGGTCAAAGGCTATT 58.518 40.909 27.02 0.00 0.00 1.73
54 55 3.134574 TCAACGTTGGTCAAAGGCTAT 57.865 42.857 27.02 0.00 0.00 2.97
55 56 2.623878 TCAACGTTGGTCAAAGGCTA 57.376 45.000 27.02 1.57 0.00 3.93
56 57 1.676006 CTTCAACGTTGGTCAAAGGCT 59.324 47.619 27.02 0.00 0.00 4.58
57 58 1.269051 CCTTCAACGTTGGTCAAAGGC 60.269 52.381 27.02 0.00 33.56 4.35
58 59 1.269051 GCCTTCAACGTTGGTCAAAGG 60.269 52.381 28.98 28.98 39.22 3.11
59 60 1.596954 CGCCTTCAACGTTGGTCAAAG 60.597 52.381 27.02 21.06 0.00 2.77
60 61 0.378962 CGCCTTCAACGTTGGTCAAA 59.621 50.000 27.02 13.42 0.00 2.69
61 62 2.018544 CGCCTTCAACGTTGGTCAA 58.981 52.632 27.02 13.77 0.00 3.18
62 63 2.539338 GCGCCTTCAACGTTGGTCA 61.539 57.895 27.02 11.37 0.00 4.02
63 64 2.251371 GCGCCTTCAACGTTGGTC 59.749 61.111 27.02 12.81 0.00 4.02
64 65 3.284449 GGCGCCTTCAACGTTGGT 61.284 61.111 27.02 0.00 0.00 3.67
65 66 3.254014 CTGGCGCCTTCAACGTTGG 62.254 63.158 29.70 13.35 0.00 3.77
66 67 2.252260 CTGGCGCCTTCAACGTTG 59.748 61.111 29.70 22.35 0.00 4.10
67 68 3.660111 GCTGGCGCCTTCAACGTT 61.660 61.111 29.70 0.00 0.00 3.99
70 71 4.090057 GACGCTGGCGCCTTCAAC 62.090 66.667 29.70 12.63 44.19 3.18
71 72 4.617520 TGACGCTGGCGCCTTCAA 62.618 61.111 29.70 5.90 44.19 2.69
72 73 4.617520 TTGACGCTGGCGCCTTCA 62.618 61.111 29.70 20.59 44.19 3.02
73 74 2.200170 AATTTGACGCTGGCGCCTTC 62.200 55.000 29.70 17.82 44.19 3.46
74 75 1.805428 AAATTTGACGCTGGCGCCTT 61.805 50.000 29.70 9.25 44.19 4.35
75 76 0.958382 TAAATTTGACGCTGGCGCCT 60.958 50.000 29.70 6.86 44.19 5.52
76 77 0.100503 ATAAATTTGACGCTGGCGCC 59.899 50.000 22.73 22.73 44.19 6.53
77 78 1.908065 AATAAATTTGACGCTGGCGC 58.092 45.000 15.04 0.00 44.19 6.53
78 79 6.567769 AAATAAATAAATTTGACGCTGGCG 57.432 33.333 13.56 13.56 46.03 5.69
79 80 9.900264 CTAAAAATAAATAAATTTGACGCTGGC 57.100 29.630 0.00 0.00 0.00 4.85
81 82 9.900264 GCCTAAAAATAAATAAATTTGACGCTG 57.100 29.630 0.00 0.00 0.00 5.18
82 83 8.803799 CGCCTAAAAATAAATAAATTTGACGCT 58.196 29.630 0.00 0.00 0.00 5.07
83 84 7.577668 GCGCCTAAAAATAAATAAATTTGACGC 59.422 33.333 0.00 0.00 0.00 5.19
84 85 8.053653 GGCGCCTAAAAATAAATAAATTTGACG 58.946 33.333 22.15 0.00 0.00 4.35
85 86 8.053653 CGGCGCCTAAAAATAAATAAATTTGAC 58.946 33.333 26.68 0.00 0.00 3.18
86 87 7.222999 CCGGCGCCTAAAAATAAATAAATTTGA 59.777 33.333 26.68 0.00 0.00 2.69
87 88 7.222999 TCCGGCGCCTAAAAATAAATAAATTTG 59.777 33.333 26.68 0.79 0.00 2.32
88 89 7.223193 GTCCGGCGCCTAAAAATAAATAAATTT 59.777 33.333 26.68 0.00 0.00 1.82
89 90 6.698329 GTCCGGCGCCTAAAAATAAATAAATT 59.302 34.615 26.68 0.00 0.00 1.82
90 91 6.183360 TGTCCGGCGCCTAAAAATAAATAAAT 60.183 34.615 26.68 0.00 0.00 1.40
91 92 5.125097 TGTCCGGCGCCTAAAAATAAATAAA 59.875 36.000 26.68 0.00 0.00 1.40
92 93 4.639310 TGTCCGGCGCCTAAAAATAAATAA 59.361 37.500 26.68 0.00 0.00 1.40
93 94 4.035441 GTGTCCGGCGCCTAAAAATAAATA 59.965 41.667 26.68 0.00 0.00 1.40
94 95 3.018149 TGTCCGGCGCCTAAAAATAAAT 58.982 40.909 26.68 0.00 0.00 1.40
95 96 2.162008 GTGTCCGGCGCCTAAAAATAAA 59.838 45.455 26.68 0.00 0.00 1.40
96 97 1.738908 GTGTCCGGCGCCTAAAAATAA 59.261 47.619 26.68 0.00 0.00 1.40
97 98 1.338864 TGTGTCCGGCGCCTAAAAATA 60.339 47.619 26.68 2.12 0.00 1.40
98 99 0.606944 TGTGTCCGGCGCCTAAAAAT 60.607 50.000 26.68 0.00 0.00 1.82
99 100 1.227883 TGTGTCCGGCGCCTAAAAA 60.228 52.632 26.68 0.96 0.00 1.94
100 101 1.962306 GTGTGTCCGGCGCCTAAAA 60.962 57.895 26.68 3.95 0.00 1.52
101 102 1.534336 TAGTGTGTCCGGCGCCTAAA 61.534 55.000 26.68 6.51 0.00 1.85
102 103 1.324740 ATAGTGTGTCCGGCGCCTAA 61.325 55.000 26.68 9.51 0.00 2.69
103 104 1.755395 ATAGTGTGTCCGGCGCCTA 60.755 57.895 26.68 9.93 0.00 3.93
104 105 3.075005 ATAGTGTGTCCGGCGCCT 61.075 61.111 26.68 5.16 0.00 5.52
105 106 2.890474 CATAGTGTGTCCGGCGCC 60.890 66.667 19.07 19.07 0.00 6.53
106 107 3.564027 GCATAGTGTGTCCGGCGC 61.564 66.667 0.00 0.00 0.00 6.53
107 108 0.179121 TAAGCATAGTGTGTCCGGCG 60.179 55.000 0.00 0.00 0.00 6.46
108 109 1.136305 TCTAAGCATAGTGTGTCCGGC 59.864 52.381 0.00 0.00 0.00 6.13
109 110 3.520290 TTCTAAGCATAGTGTGTCCGG 57.480 47.619 0.00 0.00 0.00 5.14
110 111 4.504461 GTGATTCTAAGCATAGTGTGTCCG 59.496 45.833 0.00 0.00 0.00 4.79
111 112 4.504461 CGTGATTCTAAGCATAGTGTGTCC 59.496 45.833 0.00 0.00 0.00 4.02
112 113 4.504461 CCGTGATTCTAAGCATAGTGTGTC 59.496 45.833 0.00 0.00 0.00 3.67
113 114 4.433615 CCGTGATTCTAAGCATAGTGTGT 58.566 43.478 0.00 0.00 0.00 3.72
114 115 3.804325 CCCGTGATTCTAAGCATAGTGTG 59.196 47.826 0.00 0.00 0.00 3.82
115 116 3.741388 GCCCGTGATTCTAAGCATAGTGT 60.741 47.826 0.00 0.00 0.00 3.55
116 117 2.802816 GCCCGTGATTCTAAGCATAGTG 59.197 50.000 0.00 0.00 0.00 2.74
117 118 2.224305 GGCCCGTGATTCTAAGCATAGT 60.224 50.000 0.00 0.00 0.00 2.12
118 119 2.224281 TGGCCCGTGATTCTAAGCATAG 60.224 50.000 0.00 0.00 0.00 2.23
119 120 1.765904 TGGCCCGTGATTCTAAGCATA 59.234 47.619 0.00 0.00 0.00 3.14
120 121 0.546122 TGGCCCGTGATTCTAAGCAT 59.454 50.000 0.00 0.00 0.00 3.79
121 122 0.392461 GTGGCCCGTGATTCTAAGCA 60.392 55.000 0.00 0.00 0.00 3.91
122 123 1.429148 CGTGGCCCGTGATTCTAAGC 61.429 60.000 0.00 0.00 0.00 3.09
123 124 2.677971 CGTGGCCCGTGATTCTAAG 58.322 57.895 0.00 0.00 0.00 2.18
124 125 4.924019 CGTGGCCCGTGATTCTAA 57.076 55.556 0.00 0.00 0.00 2.10
133 134 3.818121 TTGAGGTTCACGTGGCCCG 62.818 63.158 17.00 11.48 44.03 6.13
134 135 1.303317 ATTGAGGTTCACGTGGCCC 60.303 57.895 17.00 15.44 0.00 5.80
135 136 1.875963 CATTGAGGTTCACGTGGCC 59.124 57.895 17.00 17.75 0.00 5.36
136 137 1.210155 GCATTGAGGTTCACGTGGC 59.790 57.895 17.00 9.07 0.00 5.01
137 138 1.586154 GGGCATTGAGGTTCACGTGG 61.586 60.000 17.00 0.00 0.00 4.94
138 139 0.888736 TGGGCATTGAGGTTCACGTG 60.889 55.000 9.94 9.94 0.00 4.49
139 140 0.179004 TTGGGCATTGAGGTTCACGT 60.179 50.000 0.00 0.00 0.00 4.49
140 141 0.240945 GTTGGGCATTGAGGTTCACG 59.759 55.000 0.00 0.00 0.00 4.35
141 142 0.603065 GGTTGGGCATTGAGGTTCAC 59.397 55.000 0.00 0.00 0.00 3.18
142 143 0.541764 GGGTTGGGCATTGAGGTTCA 60.542 55.000 0.00 0.00 0.00 3.18
143 144 1.595093 CGGGTTGGGCATTGAGGTTC 61.595 60.000 0.00 0.00 0.00 3.62
144 145 1.606313 CGGGTTGGGCATTGAGGTT 60.606 57.895 0.00 0.00 0.00 3.50
145 146 1.493854 TACGGGTTGGGCATTGAGGT 61.494 55.000 0.00 0.00 0.00 3.85
146 147 0.748005 CTACGGGTTGGGCATTGAGG 60.748 60.000 0.00 0.00 0.00 3.86
147 148 0.035439 ACTACGGGTTGGGCATTGAG 60.035 55.000 0.00 0.00 0.00 3.02
148 149 1.065998 GTACTACGGGTTGGGCATTGA 60.066 52.381 0.00 0.00 0.00 2.57
149 150 1.339247 TGTACTACGGGTTGGGCATTG 60.339 52.381 0.00 0.00 0.00 2.82
150 151 0.985760 TGTACTACGGGTTGGGCATT 59.014 50.000 0.00 0.00 0.00 3.56
151 152 0.985760 TTGTACTACGGGTTGGGCAT 59.014 50.000 0.00 0.00 0.00 4.40
152 153 0.322322 CTTGTACTACGGGTTGGGCA 59.678 55.000 0.00 0.00 0.00 5.36
153 154 0.609662 TCTTGTACTACGGGTTGGGC 59.390 55.000 0.00 0.00 0.00 5.36
154 155 3.405823 TTTCTTGTACTACGGGTTGGG 57.594 47.619 0.00 0.00 0.00 4.12
155 156 3.187842 GCTTTTCTTGTACTACGGGTTGG 59.812 47.826 0.00 0.00 0.00 3.77
156 157 3.187842 GGCTTTTCTTGTACTACGGGTTG 59.812 47.826 0.00 0.00 0.00 3.77
157 158 3.405831 GGCTTTTCTTGTACTACGGGTT 58.594 45.455 0.00 0.00 0.00 4.11
158 159 2.289882 GGGCTTTTCTTGTACTACGGGT 60.290 50.000 0.00 0.00 0.00 5.28
159 160 2.289819 TGGGCTTTTCTTGTACTACGGG 60.290 50.000 0.00 0.00 0.00 5.28
160 161 3.048337 TGGGCTTTTCTTGTACTACGG 57.952 47.619 0.00 0.00 0.00 4.02
161 162 3.435671 CCTTGGGCTTTTCTTGTACTACG 59.564 47.826 0.00 0.00 0.00 3.51
162 163 4.454847 GTCCTTGGGCTTTTCTTGTACTAC 59.545 45.833 0.00 0.00 0.00 2.73
163 164 4.648651 GTCCTTGGGCTTTTCTTGTACTA 58.351 43.478 0.00 0.00 0.00 1.82
164 165 3.487372 GTCCTTGGGCTTTTCTTGTACT 58.513 45.455 0.00 0.00 0.00 2.73
165 166 2.225727 CGTCCTTGGGCTTTTCTTGTAC 59.774 50.000 0.00 0.00 0.00 2.90
166 167 2.105134 TCGTCCTTGGGCTTTTCTTGTA 59.895 45.455 0.00 0.00 0.00 2.41
167 168 1.133915 TCGTCCTTGGGCTTTTCTTGT 60.134 47.619 0.00 0.00 0.00 3.16
168 169 1.604604 TCGTCCTTGGGCTTTTCTTG 58.395 50.000 0.00 0.00 0.00 3.02
169 170 2.158667 TCTTCGTCCTTGGGCTTTTCTT 60.159 45.455 0.00 0.00 0.00 2.52
170 171 1.420138 TCTTCGTCCTTGGGCTTTTCT 59.580 47.619 0.00 0.00 0.00 2.52
171 172 1.535896 GTCTTCGTCCTTGGGCTTTTC 59.464 52.381 0.00 0.00 0.00 2.29
172 173 1.143073 AGTCTTCGTCCTTGGGCTTTT 59.857 47.619 0.00 0.00 0.00 2.27
173 174 0.765510 AGTCTTCGTCCTTGGGCTTT 59.234 50.000 0.00 0.00 0.00 3.51
174 175 1.640917 TAGTCTTCGTCCTTGGGCTT 58.359 50.000 0.00 0.00 0.00 4.35
175 176 1.550976 CTTAGTCTTCGTCCTTGGGCT 59.449 52.381 0.00 0.00 0.00 5.19
176 177 1.275573 ACTTAGTCTTCGTCCTTGGGC 59.724 52.381 0.00 0.00 0.00 5.36
177 178 2.094130 GGACTTAGTCTTCGTCCTTGGG 60.094 54.545 12.41 0.00 42.99 4.12
178 179 2.561419 TGGACTTAGTCTTCGTCCTTGG 59.439 50.000 12.41 0.00 45.75 3.61
179 180 3.936372 TGGACTTAGTCTTCGTCCTTG 57.064 47.619 12.41 0.00 45.75 3.61
180 181 3.306156 GCTTGGACTTAGTCTTCGTCCTT 60.306 47.826 12.41 0.00 45.75 3.36
181 182 2.231721 GCTTGGACTTAGTCTTCGTCCT 59.768 50.000 12.41 0.00 45.75 3.85
182 183 2.608268 GCTTGGACTTAGTCTTCGTCC 58.392 52.381 12.41 11.44 45.76 4.79
183 184 2.608268 GGCTTGGACTTAGTCTTCGTC 58.392 52.381 12.41 0.00 32.47 4.20
184 185 1.275573 GGGCTTGGACTTAGTCTTCGT 59.724 52.381 12.41 0.00 32.47 3.85
185 186 1.275291 TGGGCTTGGACTTAGTCTTCG 59.725 52.381 12.41 2.19 32.47 3.79
186 187 3.339141 CTTGGGCTTGGACTTAGTCTTC 58.661 50.000 12.41 0.00 32.47 2.87
187 188 2.040412 CCTTGGGCTTGGACTTAGTCTT 59.960 50.000 12.41 0.00 32.47 3.01
188 189 1.630878 CCTTGGGCTTGGACTTAGTCT 59.369 52.381 12.41 0.00 32.47 3.24
189 190 1.950954 GCCTTGGGCTTGGACTTAGTC 60.951 57.143 3.36 3.36 46.69 2.59
190 191 0.038310 GCCTTGGGCTTGGACTTAGT 59.962 55.000 0.80 0.00 46.69 2.24
191 192 2.873797 GCCTTGGGCTTGGACTTAG 58.126 57.895 0.80 0.00 46.69 2.18
208 209 3.733960 GTTTTCGGTCCGGCAGGC 61.734 66.667 12.29 0.00 37.47 4.85
209 210 2.281208 TGTTTTCGGTCCGGCAGG 60.281 61.111 12.29 0.00 39.46 4.85
210 211 2.966309 GCTGTTTTCGGTCCGGCAG 61.966 63.158 12.29 14.83 0.00 4.85
211 212 2.975799 GCTGTTTTCGGTCCGGCA 60.976 61.111 12.29 5.13 0.00 5.69
212 213 2.791501 TAGGCTGTTTTCGGTCCGGC 62.792 60.000 12.29 5.36 0.00 6.13
213 214 0.739813 CTAGGCTGTTTTCGGTCCGG 60.740 60.000 12.29 0.00 0.00 5.14
214 215 1.359459 GCTAGGCTGTTTTCGGTCCG 61.359 60.000 4.39 4.39 0.00 4.79
215 216 0.321298 TGCTAGGCTGTTTTCGGTCC 60.321 55.000 0.00 0.00 0.00 4.46
216 217 1.464997 CTTGCTAGGCTGTTTTCGGTC 59.535 52.381 0.00 0.00 0.00 4.79
217 218 1.071699 TCTTGCTAGGCTGTTTTCGGT 59.928 47.619 0.00 0.00 0.00 4.69
218 219 1.734465 CTCTTGCTAGGCTGTTTTCGG 59.266 52.381 0.00 0.00 0.00 4.30
219 220 1.734465 CCTCTTGCTAGGCTGTTTTCG 59.266 52.381 0.00 0.00 0.00 3.46
228 229 1.001406 CGATAAGGGCCTCTTGCTAGG 59.999 57.143 6.46 0.00 40.92 3.02
229 230 1.689273 ACGATAAGGGCCTCTTGCTAG 59.311 52.381 6.46 0.00 40.92 3.42
230 231 1.789523 ACGATAAGGGCCTCTTGCTA 58.210 50.000 6.46 0.00 40.92 3.49
231 232 0.912486 AACGATAAGGGCCTCTTGCT 59.088 50.000 6.46 0.00 40.92 3.91
232 233 1.751437 AAACGATAAGGGCCTCTTGC 58.249 50.000 6.46 0.00 36.93 4.01
233 234 3.081804 ACAAAACGATAAGGGCCTCTTG 58.918 45.455 6.46 3.94 36.93 3.02
234 235 3.009143 AGACAAAACGATAAGGGCCTCTT 59.991 43.478 6.46 7.24 39.40 2.85
235 236 2.572104 AGACAAAACGATAAGGGCCTCT 59.428 45.455 6.46 0.00 0.00 3.69
236 237 2.937149 GAGACAAAACGATAAGGGCCTC 59.063 50.000 6.46 0.00 0.00 4.70
237 238 2.304761 TGAGACAAAACGATAAGGGCCT 59.695 45.455 0.00 0.00 0.00 5.19
238 239 2.706890 TGAGACAAAACGATAAGGGCC 58.293 47.619 0.00 0.00 0.00 5.80
239 240 4.454504 TCTTTGAGACAAAACGATAAGGGC 59.545 41.667 0.00 0.00 0.00 5.19
240 241 6.554334 TTCTTTGAGACAAAACGATAAGGG 57.446 37.500 0.00 0.00 0.00 3.95
241 242 8.850454 TTTTTCTTTGAGACAAAACGATAAGG 57.150 30.769 0.00 0.00 0.00 2.69
263 264 2.484742 ACGATAAGGGCCTCGTTTTT 57.515 45.000 6.46 0.00 45.15 1.94
268 269 1.299926 CCGAACGATAAGGGCCTCG 60.300 63.158 6.46 9.67 40.62 4.63
269 270 0.177373 AACCGAACGATAAGGGCCTC 59.823 55.000 6.46 0.00 0.00 4.70
270 271 0.107848 CAACCGAACGATAAGGGCCT 60.108 55.000 0.00 0.00 0.00 5.19
271 272 0.392060 ACAACCGAACGATAAGGGCC 60.392 55.000 0.00 0.00 0.00 5.80
272 273 1.004595 GACAACCGAACGATAAGGGC 58.995 55.000 0.00 0.00 0.00 5.19
273 274 1.206371 AGGACAACCGAACGATAAGGG 59.794 52.381 0.00 0.00 41.83 3.95
274 275 2.268298 CAGGACAACCGAACGATAAGG 58.732 52.381 0.00 0.00 41.83 2.69
275 276 2.094390 TCCAGGACAACCGAACGATAAG 60.094 50.000 0.00 0.00 41.83 1.73
276 277 1.894466 TCCAGGACAACCGAACGATAA 59.106 47.619 0.00 0.00 41.83 1.75
277 278 1.548081 TCCAGGACAACCGAACGATA 58.452 50.000 0.00 0.00 41.83 2.92
278 279 0.902531 ATCCAGGACAACCGAACGAT 59.097 50.000 0.00 0.00 41.83 3.73
279 280 0.682852 AATCCAGGACAACCGAACGA 59.317 50.000 0.00 0.00 41.83 3.85
280 281 1.519408 AAATCCAGGACAACCGAACG 58.481 50.000 0.00 0.00 41.83 3.95
281 282 2.607038 GCAAAATCCAGGACAACCGAAC 60.607 50.000 0.00 0.00 41.83 3.95
282 283 1.611491 GCAAAATCCAGGACAACCGAA 59.389 47.619 0.00 0.00 41.83 4.30
283 284 1.243902 GCAAAATCCAGGACAACCGA 58.756 50.000 0.00 0.00 41.83 4.69
284 285 0.243636 GGCAAAATCCAGGACAACCG 59.756 55.000 0.00 0.00 41.83 4.44
285 286 0.608130 GGGCAAAATCCAGGACAACC 59.392 55.000 0.00 0.00 0.00 3.77
286 287 1.546029 GAGGGCAAAATCCAGGACAAC 59.454 52.381 0.00 0.00 0.00 3.32
287 288 1.886222 CGAGGGCAAAATCCAGGACAA 60.886 52.381 0.00 0.00 0.00 3.18
288 289 0.322456 CGAGGGCAAAATCCAGGACA 60.322 55.000 0.00 0.00 0.00 4.02
289 290 1.032114 CCGAGGGCAAAATCCAGGAC 61.032 60.000 0.00 0.00 0.00 3.85
290 291 1.204786 TCCGAGGGCAAAATCCAGGA 61.205 55.000 0.00 0.00 33.27 3.86
291 292 0.323360 TTCCGAGGGCAAAATCCAGG 60.323 55.000 0.00 0.00 0.00 4.45
356 358 0.104409 AGAGGTTCCAAGTGAGGGGT 60.104 55.000 0.00 0.00 0.00 4.95
376 380 3.499929 GATGCGGGCGGAATCTCGA 62.500 63.158 5.80 0.00 0.00 4.04
385 389 2.203056 TGATGGAAGATGCGGGCG 60.203 61.111 0.00 0.00 0.00 6.13
392 396 4.490547 AGAGAGGGATCTGATGGAAGAT 57.509 45.455 0.00 0.00 39.66 2.40
418 422 4.832823 TGGACGAAGAGATGCAGGAATATA 59.167 41.667 0.00 0.00 0.00 0.86
420 424 3.031013 TGGACGAAGAGATGCAGGAATA 58.969 45.455 0.00 0.00 0.00 1.75
441 445 0.765510 ACGGAGCTCCAAGAAGGTTT 59.234 50.000 31.67 1.59 39.02 3.27
451 455 1.545706 AAGAGGAACCACGGAGCTCC 61.546 60.000 23.79 23.79 0.00 4.70
452 456 0.390472 CAAGAGGAACCACGGAGCTC 60.390 60.000 4.71 4.71 0.00 4.09
455 459 0.035458 AAGCAAGAGGAACCACGGAG 59.965 55.000 0.00 0.00 0.00 4.63
493 497 1.549170 AGGCAAGTAAGAATCGACGGT 59.451 47.619 0.00 0.00 0.00 4.83
495 499 2.607187 ACAGGCAAGTAAGAATCGACG 58.393 47.619 0.00 0.00 0.00 5.12
496 500 3.864003 GGTACAGGCAAGTAAGAATCGAC 59.136 47.826 0.00 0.00 0.00 4.20
497 501 3.512329 TGGTACAGGCAAGTAAGAATCGA 59.488 43.478 0.00 0.00 0.00 3.59
541 552 8.037166 CAGATACCAGCAATCATATAACTAGCA 58.963 37.037 0.00 0.00 0.00 3.49
563 574 4.284178 AGCAAATCATTTACAGGGCAGAT 58.716 39.130 0.00 0.00 0.00 2.90
564 575 3.696051 GAGCAAATCATTTACAGGGCAGA 59.304 43.478 0.00 0.00 0.00 4.26
565 576 3.488047 CGAGCAAATCATTTACAGGGCAG 60.488 47.826 0.00 0.00 0.00 4.85
566 577 2.423185 CGAGCAAATCATTTACAGGGCA 59.577 45.455 0.00 0.00 0.00 5.36
567 578 2.682856 TCGAGCAAATCATTTACAGGGC 59.317 45.455 0.00 0.00 0.00 5.19
568 579 5.505173 AATCGAGCAAATCATTTACAGGG 57.495 39.130 0.00 0.00 0.00 4.45
569 580 7.011389 TGTCTAATCGAGCAAATCATTTACAGG 59.989 37.037 0.00 0.00 0.00 4.00
570 581 7.909267 TGTCTAATCGAGCAAATCATTTACAG 58.091 34.615 0.00 0.00 0.00 2.74
571 582 7.549134 ACTGTCTAATCGAGCAAATCATTTACA 59.451 33.333 0.00 0.00 0.00 2.41
572 583 7.910304 ACTGTCTAATCGAGCAAATCATTTAC 58.090 34.615 0.00 0.00 0.00 2.01
573 584 8.492673 AACTGTCTAATCGAGCAAATCATTTA 57.507 30.769 0.00 0.00 0.00 1.40
574 585 6.992063 ACTGTCTAATCGAGCAAATCATTT 57.008 33.333 0.00 0.00 0.00 2.32
575 586 6.992063 AACTGTCTAATCGAGCAAATCATT 57.008 33.333 0.00 0.00 0.00 2.57
576 587 8.492673 TTTAACTGTCTAATCGAGCAAATCAT 57.507 30.769 0.00 0.00 0.00 2.45
577 588 7.899178 TTTAACTGTCTAATCGAGCAAATCA 57.101 32.000 0.00 0.00 0.00 2.57
583 610 7.464830 TGCTAATTTAACTGTCTAATCGAGC 57.535 36.000 0.00 11.04 0.00 5.03
593 620 8.320338 AGGGAGTAGTATGCTAATTTAACTGT 57.680 34.615 0.00 0.00 0.00 3.55
594 621 7.873505 GGAGGGAGTAGTATGCTAATTTAACTG 59.126 40.741 0.00 0.00 0.00 3.16
613 640 5.420409 GCTTATATTATGGAACGGAGGGAG 58.580 45.833 0.00 0.00 0.00 4.30
614 641 4.081862 CGCTTATATTATGGAACGGAGGGA 60.082 45.833 0.00 0.00 0.00 4.20
615 642 4.181578 CGCTTATATTATGGAACGGAGGG 58.818 47.826 0.00 0.00 0.00 4.30
616 643 4.625742 CACGCTTATATTATGGAACGGAGG 59.374 45.833 0.00 0.00 0.00 4.30
617 644 5.227908 ACACGCTTATATTATGGAACGGAG 58.772 41.667 0.00 0.00 0.00 4.63
618 645 5.204409 ACACGCTTATATTATGGAACGGA 57.796 39.130 0.00 0.00 0.00 4.69
619 646 5.917541 AACACGCTTATATTATGGAACGG 57.082 39.130 0.00 0.00 0.00 4.44
620 647 7.906010 TCAAAAACACGCTTATATTATGGAACG 59.094 33.333 0.00 0.00 0.00 3.95
621 648 9.006215 GTCAAAAACACGCTTATATTATGGAAC 57.994 33.333 0.00 0.00 0.00 3.62
622 649 8.731605 TGTCAAAAACACGCTTATATTATGGAA 58.268 29.630 0.00 0.00 31.20 3.53
623 650 8.270080 TGTCAAAAACACGCTTATATTATGGA 57.730 30.769 0.00 0.00 31.20 3.41
638 665 4.328536 ACACCACACTAGTGTCAAAAACA 58.671 39.130 25.63 0.00 45.13 2.83
639 666 4.957759 ACACCACACTAGTGTCAAAAAC 57.042 40.909 25.63 0.00 45.13 2.43
647 674 3.372822 ACGTTTTTGACACCACACTAGTG 59.627 43.478 21.44 21.44 45.47 2.74
648 675 3.602483 ACGTTTTTGACACCACACTAGT 58.398 40.909 0.00 0.00 0.00 2.57
649 676 4.331717 AGAACGTTTTTGACACCACACTAG 59.668 41.667 0.46 0.00 0.00 2.57
650 677 4.255301 AGAACGTTTTTGACACCACACTA 58.745 39.130 0.46 0.00 0.00 2.74
651 678 3.078837 AGAACGTTTTTGACACCACACT 58.921 40.909 0.46 0.00 0.00 3.55
652 679 3.481112 AGAACGTTTTTGACACCACAC 57.519 42.857 0.46 0.00 0.00 3.82
653 680 5.821516 ATAAGAACGTTTTTGACACCACA 57.178 34.783 13.87 0.00 0.00 4.17
654 681 6.951643 ACTATAAGAACGTTTTTGACACCAC 58.048 36.000 13.87 0.00 0.00 4.16
655 682 8.714179 CATACTATAAGAACGTTTTTGACACCA 58.286 33.333 13.87 0.00 0.00 4.17
656 683 8.173130 CCATACTATAAGAACGTTTTTGACACC 58.827 37.037 13.87 0.00 0.00 4.16
657 684 8.173130 CCCATACTATAAGAACGTTTTTGACAC 58.827 37.037 13.87 0.00 0.00 3.67
658 685 8.095792 TCCCATACTATAAGAACGTTTTTGACA 58.904 33.333 13.87 0.00 0.00 3.58
659 686 8.483307 TCCCATACTATAAGAACGTTTTTGAC 57.517 34.615 13.87 0.00 0.00 3.18
660 687 9.104965 CATCCCATACTATAAGAACGTTTTTGA 57.895 33.333 13.87 1.72 0.00 2.69
661 688 8.342634 CCATCCCATACTATAAGAACGTTTTTG 58.657 37.037 13.87 0.57 0.00 2.44
662 689 8.269317 TCCATCCCATACTATAAGAACGTTTTT 58.731 33.333 9.22 9.22 0.00 1.94
663 690 7.798071 TCCATCCCATACTATAAGAACGTTTT 58.202 34.615 0.46 0.00 0.00 2.43
664 691 7.369551 TCCATCCCATACTATAAGAACGTTT 57.630 36.000 0.46 0.00 0.00 3.60
665 692 6.014499 CCTCCATCCCATACTATAAGAACGTT 60.014 42.308 0.00 0.00 0.00 3.99
666 693 5.480772 CCTCCATCCCATACTATAAGAACGT 59.519 44.000 0.00 0.00 0.00 3.99
667 694 5.105310 CCCTCCATCCCATACTATAAGAACG 60.105 48.000 0.00 0.00 0.00 3.95
668 695 6.023603 TCCCTCCATCCCATACTATAAGAAC 58.976 44.000 0.00 0.00 0.00 3.01
669 696 6.023603 GTCCCTCCATCCCATACTATAAGAA 58.976 44.000 0.00 0.00 0.00 2.52
670 697 5.318889 AGTCCCTCCATCCCATACTATAAGA 59.681 44.000 0.00 0.00 0.00 2.10
671 698 5.594777 AGTCCCTCCATCCCATACTATAAG 58.405 45.833 0.00 0.00 0.00 1.73
672 699 5.633473 AGTCCCTCCATCCCATACTATAA 57.367 43.478 0.00 0.00 0.00 0.98
673 700 5.801713 ACTAGTCCCTCCATCCCATACTATA 59.198 44.000 0.00 0.00 0.00 1.31
674 701 4.612945 ACTAGTCCCTCCATCCCATACTAT 59.387 45.833 0.00 0.00 0.00 2.12
675 702 3.995077 ACTAGTCCCTCCATCCCATACTA 59.005 47.826 0.00 0.00 0.00 1.82
676 703 2.798368 ACTAGTCCCTCCATCCCATACT 59.202 50.000 0.00 0.00 0.00 2.12
677 704 3.261818 ACTAGTCCCTCCATCCCATAC 57.738 52.381 0.00 0.00 0.00 2.39
678 705 4.257078 TCTACTAGTCCCTCCATCCCATA 58.743 47.826 0.00 0.00 0.00 2.74
679 706 3.072086 TCTACTAGTCCCTCCATCCCAT 58.928 50.000 0.00 0.00 0.00 4.00
680 707 2.510330 TCTACTAGTCCCTCCATCCCA 58.490 52.381 0.00 0.00 0.00 4.37
681 708 3.837399 ATCTACTAGTCCCTCCATCCC 57.163 52.381 0.00 0.00 0.00 3.85
682 709 4.263435 CGTATCTACTAGTCCCTCCATCC 58.737 52.174 0.00 0.00 0.00 3.51
683 710 4.263418 ACCGTATCTACTAGTCCCTCCATC 60.263 50.000 0.00 0.00 0.00 3.51
684 711 3.656751 ACCGTATCTACTAGTCCCTCCAT 59.343 47.826 0.00 0.00 0.00 3.41
685 712 3.051581 ACCGTATCTACTAGTCCCTCCA 58.948 50.000 0.00 0.00 0.00 3.86
686 713 3.786368 ACCGTATCTACTAGTCCCTCC 57.214 52.381 0.00 0.00 0.00 4.30
687 714 4.971939 AGAACCGTATCTACTAGTCCCTC 58.028 47.826 0.00 0.00 0.00 4.30
688 715 4.659835 AGAGAACCGTATCTACTAGTCCCT 59.340 45.833 0.00 0.00 0.00 4.20
689 716 4.756135 CAGAGAACCGTATCTACTAGTCCC 59.244 50.000 0.00 0.00 0.00 4.46
690 717 5.367302 ACAGAGAACCGTATCTACTAGTCC 58.633 45.833 0.00 0.00 0.00 3.85
691 718 6.923928 AACAGAGAACCGTATCTACTAGTC 57.076 41.667 0.00 0.00 0.00 2.59
692 719 8.977267 ATAAACAGAGAACCGTATCTACTAGT 57.023 34.615 0.00 0.00 0.00 2.57
712 739 9.817809 GGGGGAAAGAAGAAATGAAATATAAAC 57.182 33.333 0.00 0.00 0.00 2.01
718 745 6.558394 TGAAAGGGGGAAAGAAGAAATGAAAT 59.442 34.615 0.00 0.00 0.00 2.17
734 763 0.035056 CTGTACTGGCTGAAAGGGGG 60.035 60.000 0.00 0.00 0.00 5.40
739 768 1.419762 TCTTGGCTGTACTGGCTGAAA 59.580 47.619 23.52 11.34 0.00 2.69
753 786 5.418840 TGATTCAGGGTTCTTATTTCTTGGC 59.581 40.000 0.00 0.00 0.00 4.52
763 796 5.073144 TCCAGTTTAGTGATTCAGGGTTCTT 59.927 40.000 0.00 0.00 0.00 2.52
764 797 4.597507 TCCAGTTTAGTGATTCAGGGTTCT 59.402 41.667 0.00 0.00 0.00 3.01
767 800 4.506802 GGTTCCAGTTTAGTGATTCAGGGT 60.507 45.833 0.00 0.00 0.00 4.34
770 803 6.824305 AATGGTTCCAGTTTAGTGATTCAG 57.176 37.500 0.00 0.00 0.00 3.02
825 858 4.204978 GCATTGCACACAATATAAAGCGTC 59.795 41.667 3.15 0.00 44.83 5.19
829 862 7.703197 TCAGAATGCATTGCACACAATATAAAG 59.297 33.333 18.59 0.00 43.04 1.85
840 874 0.458669 CCCCTCAGAATGCATTGCAC 59.541 55.000 18.59 2.16 43.04 4.57
843 877 2.940158 TCATCCCCTCAGAATGCATTG 58.060 47.619 18.59 4.04 34.76 2.82
847 881 5.690464 AGTATATCATCCCCTCAGAATGC 57.310 43.478 0.00 0.00 34.76 3.56
874 908 8.737175 TCAACTAGACGATTGAAACAGTACTAT 58.263 33.333 0.00 0.00 31.95 2.12
875 909 8.102800 TCAACTAGACGATTGAAACAGTACTA 57.897 34.615 0.00 0.00 31.95 1.82
876 910 6.978338 TCAACTAGACGATTGAAACAGTACT 58.022 36.000 0.00 0.00 31.95 2.73
877 911 7.813852 ATCAACTAGACGATTGAAACAGTAC 57.186 36.000 0.00 0.00 38.29 2.73
878 912 8.827177 AAATCAACTAGACGATTGAAACAGTA 57.173 30.769 10.70 0.00 38.29 2.74
879 913 7.730364 AAATCAACTAGACGATTGAAACAGT 57.270 32.000 10.70 0.00 38.29 3.55
880 914 8.926710 ACTAAATCAACTAGACGATTGAAACAG 58.073 33.333 10.70 5.38 38.29 3.16
881 915 8.827177 ACTAAATCAACTAGACGATTGAAACA 57.173 30.769 10.70 0.00 38.29 2.83
883 917 9.917129 TGTACTAAATCAACTAGACGATTGAAA 57.083 29.630 10.70 2.47 38.29 2.69
884 918 9.350357 GTGTACTAAATCAACTAGACGATTGAA 57.650 33.333 10.70 4.24 38.29 2.69
885 919 8.517056 TGTGTACTAAATCAACTAGACGATTGA 58.483 33.333 10.70 4.52 39.09 2.57
886 920 8.683550 TGTGTACTAAATCAACTAGACGATTG 57.316 34.615 10.70 0.00 32.27 2.67
887 921 9.871238 ATTGTGTACTAAATCAACTAGACGATT 57.129 29.630 0.00 0.98 33.27 3.34
888 922 9.302345 CATTGTGTACTAAATCAACTAGACGAT 57.698 33.333 0.00 0.00 0.00 3.73
889 923 8.301720 ACATTGTGTACTAAATCAACTAGACGA 58.698 33.333 0.00 0.00 0.00 4.20
890 924 8.462143 ACATTGTGTACTAAATCAACTAGACG 57.538 34.615 0.00 0.00 0.00 4.18
898 932 9.225436 TGCTTCAATACATTGTGTACTAAATCA 57.775 29.630 0.00 0.00 35.42 2.57
899 933 9.490663 GTGCTTCAATACATTGTGTACTAAATC 57.509 33.333 0.00 0.00 35.42 2.17
900 934 9.231297 AGTGCTTCAATACATTGTGTACTAAAT 57.769 29.630 14.18 0.00 35.42 1.40
901 935 8.503196 CAGTGCTTCAATACATTGTGTACTAAA 58.497 33.333 14.82 0.00 35.42 1.85
902 936 7.875554 TCAGTGCTTCAATACATTGTGTACTAA 59.124 33.333 14.82 5.26 35.42 2.24
903 937 7.382898 TCAGTGCTTCAATACATTGTGTACTA 58.617 34.615 14.82 7.12 35.42 1.82
904 938 6.230472 TCAGTGCTTCAATACATTGTGTACT 58.770 36.000 0.00 11.86 35.42 2.73
905 939 6.480524 TCAGTGCTTCAATACATTGTGTAC 57.519 37.500 0.00 6.41 35.42 2.90
906 940 8.962884 ATATCAGTGCTTCAATACATTGTGTA 57.037 30.769 0.00 0.00 38.84 2.90
907 941 7.553760 TGATATCAGTGCTTCAATACATTGTGT 59.446 33.333 0.00 0.00 38.84 3.72
908 942 7.922837 TGATATCAGTGCTTCAATACATTGTG 58.077 34.615 0.00 0.00 38.84 3.33
909 943 7.255035 GCTGATATCAGTGCTTCAATACATTGT 60.255 37.037 28.92 0.00 45.45 2.71
914 948 6.426025 TGATGCTGATATCAGTGCTTCAATAC 59.574 38.462 28.92 12.20 45.45 1.89
948 991 3.955650 TGTACCTTGTCCTTAGCTCAC 57.044 47.619 0.00 0.00 0.00 3.51
952 995 5.428253 TCAATCATGTACCTTGTCCTTAGC 58.572 41.667 0.00 0.00 0.00 3.09
955 998 5.819991 ACATCAATCATGTACCTTGTCCTT 58.180 37.500 0.00 0.00 44.56 3.36
979 1022 5.046014 CCATCAGGCCTAATAAGTATCAGCT 60.046 44.000 3.98 0.00 0.00 4.24
981 1024 5.485353 TCCCATCAGGCCTAATAAGTATCAG 59.515 44.000 3.98 0.00 34.51 2.90
990 1033 1.144503 CTGCTTCCCATCAGGCCTAAT 59.855 52.381 3.98 0.00 34.51 1.73
1030 1073 0.034089 GCATAACCCTGGCCTTCTGT 60.034 55.000 3.32 0.00 0.00 3.41
1038 1081 4.169696 TCCGCGGCATAACCCTGG 62.170 66.667 23.51 0.00 33.26 4.45
1047 1090 0.393132 TGGAATTAATGTCCGCGGCA 60.393 50.000 23.51 22.28 38.06 5.69
1059 1102 0.108585 GCGCCTCCCTGATGGAATTA 59.891 55.000 0.00 0.00 44.57 1.40
1110 1153 1.398390 GACGTTGATGACAGAATGGGC 59.602 52.381 0.00 0.00 43.62 5.36
1188 1231 2.171840 ACACGAGGCAGTAACTCTCAT 58.828 47.619 0.00 0.00 32.83 2.90
1209 1253 7.609960 TGCAAAACATTGAATAGGCAAATAGA 58.390 30.769 0.00 0.00 0.00 1.98
1216 1260 5.708948 TGTACTGCAAAACATTGAATAGGC 58.291 37.500 0.00 0.00 0.00 3.93
1224 1268 3.321682 AGCACCATGTACTGCAAAACATT 59.678 39.130 10.15 0.00 34.12 2.71
1228 1272 5.010516 ACAATTAGCACCATGTACTGCAAAA 59.989 36.000 7.48 2.38 35.73 2.44
1269 1313 1.071699 TGCCCCTCTACACAGAACAAC 59.928 52.381 0.00 0.00 0.00 3.32
1274 1319 1.951209 TGAATGCCCCTCTACACAGA 58.049 50.000 0.00 0.00 0.00 3.41
1289 1334 2.487986 GGATGCCCCTCGAATCTTGAAT 60.488 50.000 0.00 0.00 0.00 2.57
1298 1343 0.623194 TTGAATTGGATGCCCCTCGA 59.377 50.000 0.00 0.00 35.38 4.04
1323 1368 0.605319 GCGTGGTTGTCATCAAGGGA 60.605 55.000 0.00 0.00 33.97 4.20
1393 1438 1.340889 GAATGTTGGGAGCAAGCACAA 59.659 47.619 0.00 0.00 0.00 3.33
1402 1448 8.796475 TCTTAATTTTCTTCTGAATGTTGGGAG 58.204 33.333 0.00 0.00 31.56 4.30
1460 1506 4.129737 GCCACAGCAGCAGCATGG 62.130 66.667 17.04 17.04 46.53 3.66
1687 1733 1.620323 AGCTTTGGATGGCAAAAGACC 59.380 47.619 13.00 3.39 35.79 3.85
1753 1799 8.322828 ACTATAGAAGCATATCTAGTTCCGAGA 58.677 37.037 6.78 0.00 35.48 4.04
1755 1801 7.883833 ACACTATAGAAGCATATCTAGTTCCGA 59.116 37.037 6.78 0.00 35.48 4.55
1757 1803 7.757624 GCACACTATAGAAGCATATCTAGTTCC 59.242 40.741 6.78 0.00 35.48 3.62
1766 1812 5.360999 ACTGTCAGCACACTATAGAAGCATA 59.639 40.000 6.78 0.00 0.00 3.14
1831 1880 6.347402 CGAAATACGAGACCAGAAACAATGTT 60.347 38.462 0.00 0.00 45.77 2.71
1836 1885 3.006110 ACCGAAATACGAGACCAGAAACA 59.994 43.478 0.00 0.00 45.77 2.83
1838 1887 3.947910 ACCGAAATACGAGACCAGAAA 57.052 42.857 0.00 0.00 45.77 2.52
1846 1895 5.638783 ACTTCAAGACTACCGAAATACGAG 58.361 41.667 0.00 0.00 45.77 4.18
1847 1896 5.633830 ACTTCAAGACTACCGAAATACGA 57.366 39.130 0.00 0.00 45.77 3.43
1863 1917 4.948621 GCCTACTCACTAGGACTACTTCAA 59.051 45.833 0.00 0.00 44.88 2.69
1881 1935 5.579511 TCTTCGCATTTAAACAGTAGCCTAC 59.420 40.000 0.00 0.00 0.00 3.18
1896 1950 5.357878 TGAATTCCAGCTAATTCTTCGCATT 59.642 36.000 18.36 0.00 43.34 3.56
1919 1973 9.773328 TCGAATTTCTGCATACTTCTAATTTTG 57.227 29.630 0.00 0.00 0.00 2.44
1927 1981 6.595772 AGTGATCGAATTTCTGCATACTTC 57.404 37.500 0.00 0.00 0.00 3.01
1935 1989 6.091305 TGAGTAAGCAAGTGATCGAATTTCTG 59.909 38.462 0.00 0.00 0.00 3.02
2033 2087 5.242171 TGAAGGCATTGCTAATATGATGGTG 59.758 40.000 8.82 0.00 0.00 4.17
2034 2088 5.387788 TGAAGGCATTGCTAATATGATGGT 58.612 37.500 8.82 0.00 0.00 3.55
2035 2089 5.970317 TGAAGGCATTGCTAATATGATGG 57.030 39.130 8.82 0.00 0.00 3.51
2087 2141 2.417339 TCTGTTGTCGGAGAAACGAG 57.583 50.000 0.00 0.00 44.42 4.18
2089 2143 1.525619 GGTTCTGTTGTCGGAGAAACG 59.474 52.381 0.00 0.00 39.69 3.60
2115 2170 8.333235 AGTCCAAATGGTCCTACATAAAACATA 58.667 33.333 0.00 0.00 36.34 2.29
2182 2254 9.518906 TTTTGACTATATGCTGCATAAAACATG 57.481 29.630 24.56 13.45 29.74 3.21
2223 2298 2.339712 GGCAAACACAAGGCGCAT 59.660 55.556 10.83 0.00 0.00 4.73
2229 2304 1.680735 TGCACTAAGGGCAAACACAAG 59.319 47.619 0.00 0.00 38.54 3.16
2240 2315 6.868622 ACTCAAGTTACTCTATGCACTAAGG 58.131 40.000 0.00 0.00 0.00 2.69
2309 2385 3.636300 TCCCTGACCACTGAAAAACATTG 59.364 43.478 0.00 0.00 0.00 2.82
2334 2410 2.426738 CTCCAAAAGTTCAAGGCACACA 59.573 45.455 0.00 0.00 0.00 3.72
2398 2474 4.274978 AGGGAGAAGCTAAGAGAGTACAC 58.725 47.826 0.00 0.00 0.00 2.90
2440 2517 7.379797 GTCAAATTAGAAAAGACTTCCTTGCAC 59.620 37.037 0.00 0.00 34.79 4.57
2444 2521 8.753497 AGTGTCAAATTAGAAAAGACTTCCTT 57.247 30.769 0.00 0.00 36.47 3.36
2475 2552 8.818860 ACCACCTGTAGTGTAGTCAAAAATATA 58.181 33.333 0.00 0.00 45.74 0.86
2485 2562 2.393630 ACCACCACCTGTAGTGTAGT 57.606 50.000 0.00 0.00 45.74 2.73
2489 2566 5.334569 CGAAATTAAACCACCACCTGTAGTG 60.335 44.000 0.00 0.00 46.83 2.74
2669 2746 2.552155 GCCTTACCATGTCAAGTCACCA 60.552 50.000 0.00 0.00 0.00 4.17
2728 2805 4.508551 TGATTCCAGGACAGTAATGCAT 57.491 40.909 0.00 0.00 0.00 3.96
2763 2840 9.679661 AAATCCAAAAACTAAAGGTCATTGTTT 57.320 25.926 0.00 0.00 33.04 2.83
2764 2841 9.679661 AAAATCCAAAAACTAAAGGTCATTGTT 57.320 25.926 0.00 0.00 0.00 2.83
2765 2842 9.325198 GAAAATCCAAAAACTAAAGGTCATTGT 57.675 29.630 0.00 0.00 0.00 2.71
2766 2843 9.323985 TGAAAATCCAAAAACTAAAGGTCATTG 57.676 29.630 0.00 0.00 0.00 2.82
2768 2845 9.492973 CATGAAAATCCAAAAACTAAAGGTCAT 57.507 29.630 0.00 0.00 0.00 3.06
2920 3002 9.985730 ATTAAATGTAAAACATGCCTCATATGG 57.014 29.630 2.13 0.00 37.97 2.74
2939 3021 7.228706 ACCGGCCTAGAACATAAAGATTAAATG 59.771 37.037 0.00 0.00 0.00 2.32
2971 3053 1.623311 TGACATCGTCCACCAAGTCAT 59.377 47.619 0.00 0.00 31.72 3.06
3017 3099 2.430248 AGCACATCTTCATGGCATCA 57.570 45.000 0.00 0.00 33.82 3.07
3020 3102 3.564053 TCATAGCACATCTTCATGGCA 57.436 42.857 0.00 0.00 33.82 4.92
3041 3123 1.893808 CACAGCCACCTTCAGCGTT 60.894 57.895 0.00 0.00 0.00 4.84
3120 3202 1.476891 CTTGCTGCTCTCATGCCAAAT 59.523 47.619 0.00 0.00 0.00 2.32
3158 3240 3.918253 GAGGTCCACATTGCCGCCA 62.918 63.158 0.00 0.00 0.00 5.69
3197 3279 3.611986 CGCGGCAACAATTTCATTTACAT 59.388 39.130 0.00 0.00 0.00 2.29
3213 3295 1.875813 CAAACAGTTTTGCGCGGCA 60.876 52.632 8.83 3.20 35.94 5.69
3218 3300 6.075988 GCATTTCAAATTCAAACAGTTTTGCG 60.076 34.615 0.00 0.00 41.78 4.85
3251 3333 2.753055 TTACACGTCTGCAGCCATTA 57.247 45.000 9.47 0.00 0.00 1.90
3265 3347 6.854381 CCTGTAAGAAATCGGTGTTTTTACAC 59.146 38.462 0.00 0.00 36.48 2.90
3289 3371 2.687935 TCAGCAAACAAAGACAGTTCCC 59.312 45.455 0.00 0.00 0.00 3.97
3295 3377 4.686091 CGAGTAGATCAGCAAACAAAGACA 59.314 41.667 0.00 0.00 0.00 3.41
3374 3457 0.462759 GCTTCCATACTCAGGCGCTT 60.463 55.000 7.64 0.00 0.00 4.68
3382 3465 3.056536 TGAGATATGCCGCTTCCATACTC 60.057 47.826 0.00 0.00 31.48 2.59
3386 3469 2.303890 TCATGAGATATGCCGCTTCCAT 59.696 45.455 0.00 0.00 0.00 3.41
3404 3487 8.677870 ATTTGAGGGAGCTTAGTATCTATCAT 57.322 34.615 0.00 0.00 0.00 2.45
3484 3569 9.797556 GGAAGAAATAAAACTAAACAACACACT 57.202 29.630 0.00 0.00 0.00 3.55
3685 3793 9.565213 TTCACAAATGTTTGCAAAATAAAAAGG 57.435 25.926 14.67 1.06 41.79 3.11
3877 3992 2.164026 CCTCTCGCTTCTCGCTTGC 61.164 63.158 0.00 0.00 38.27 4.01
3887 4008 2.123897 GCTCCCTCTCCTCTCGCT 60.124 66.667 0.00 0.00 0.00 4.93
3888 4009 3.223589 GGCTCCCTCTCCTCTCGC 61.224 72.222 0.00 0.00 0.00 5.03
3889 4010 1.152567 ATGGCTCCCTCTCCTCTCG 60.153 63.158 0.00 0.00 0.00 4.04
3890 4011 1.757423 GCATGGCTCCCTCTCCTCTC 61.757 65.000 0.00 0.00 0.00 3.20
3891 4012 1.765657 GCATGGCTCCCTCTCCTCT 60.766 63.158 0.00 0.00 0.00 3.69
3892 4013 1.765657 AGCATGGCTCCCTCTCCTC 60.766 63.158 0.00 0.00 30.62 3.71
3893 4014 2.371864 AGCATGGCTCCCTCTCCT 59.628 61.111 0.00 0.00 30.62 3.69
3929 4051 0.930310 CGCTCACATGGGTCAATACG 59.070 55.000 0.00 0.00 0.00 3.06
4016 4138 0.257328 TTTGGCCTTGGTGTCAGTCA 59.743 50.000 3.32 0.00 0.00 3.41
4049 4172 6.603201 AGGAGTTATTTGATATGTGGTTGTGG 59.397 38.462 0.00 0.00 0.00 4.17
4109 4238 6.782298 TTTTTGTTCGTATATCGTGTTGGA 57.218 33.333 0.00 0.00 40.80 3.53
4166 4297 6.533367 TGTTTTGCTTTGGTTTTATCTGTGTC 59.467 34.615 0.00 0.00 0.00 3.67


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.