Multiple sequence alignment - TraesCS2B01G428900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G428900 chr2B 100.000 3410 0 0 1 3410 615919749 615923158 0.000000e+00 6298
1 TraesCS2B01G428900 chr2B 99.128 688 5 1 67 753 615908645 615909332 0.000000e+00 1236
2 TraesCS2B01G428900 chr2B 75.634 1301 256 53 1037 2308 694944110 694945378 1.050000e-164 590
3 TraesCS2B01G428900 chr2B 79.967 609 108 13 1767 2368 615578571 615579172 1.450000e-118 436
4 TraesCS2B01G428900 chr2B 77.149 442 85 14 1033 1466 615788469 615788902 3.400000e-60 243
5 TraesCS2B01G428900 chr2B 77.157 394 70 14 67 452 798597187 798597568 9.590000e-51 211
6 TraesCS2B01G428900 chr2A 91.470 2157 110 35 489 2639 668011416 668013504 0.000000e+00 2896
7 TraesCS2B01G428900 chr2A 75.310 1373 263 63 1037 2368 667942235 667943572 3.790000e-164 588
8 TraesCS2B01G428900 chr2A 84.119 573 38 15 2839 3399 668030787 668031318 3.930000e-139 505
9 TraesCS2B01G428900 chr2A 80.109 548 103 6 1764 2308 715807546 715808090 1.470000e-108 403
10 TraesCS2B01G428900 chr2A 77.114 402 63 19 69 446 602138061 602138457 4.460000e-49 206
11 TraesCS2B01G428900 chr2D 92.188 1805 98 10 854 2639 522910998 522912778 0.000000e+00 2512
12 TraesCS2B01G428900 chr2D 93.590 468 25 3 2817 3281 522912787 522913252 0.000000e+00 693
13 TraesCS2B01G428900 chr2D 77.621 782 144 25 1598 2368 522630303 522631064 2.410000e-121 446
14 TraesCS2B01G428900 chr2D 76.797 793 161 18 1625 2410 522689990 522690766 1.130000e-114 424
15 TraesCS2B01G428900 chr2D 78.067 652 133 10 1764 2410 577608636 577607990 1.470000e-108 403
16 TraesCS2B01G428900 chr2D 83.594 384 55 5 67 444 612613370 612613751 1.510000e-93 353
17 TraesCS2B01G428900 chr2D 82.713 376 33 9 444 813 522910651 522911000 4.280000e-79 305
18 TraesCS2B01G428900 chr2D 79.318 440 71 18 1037 1466 522689396 522689825 1.200000e-74 291
19 TraesCS2B01G428900 chr2D 81.790 324 52 5 127 444 619208068 619208390 7.260000e-67 265
20 TraesCS2B01G428900 chr2D 77.045 440 87 14 1033 1466 522749269 522749700 1.220000e-59 241
21 TraesCS2B01G428900 chr2D 77.250 400 67 13 67 443 442132120 442131722 2.670000e-51 213
22 TraesCS2B01G428900 chr1B 85.523 373 42 5 67 429 63598390 63598760 2.480000e-101 379
23 TraesCS2B01G428900 chr1B 90.909 176 14 1 2646 2821 364248501 364248328 5.690000e-58 235
24 TraesCS2B01G428900 chr1B 98.611 72 1 0 1 72 93979184 93979255 9.930000e-26 128
25 TraesCS2B01G428900 chr1B 97.222 72 2 0 1 72 603765802 603765873 4.620000e-24 122
26 TraesCS2B01G428900 chr1B 97.222 72 2 0 1 72 664794073 664794002 4.620000e-24 122
27 TraesCS2B01G428900 chr1D 81.679 393 56 10 67 446 439219051 439219440 2.550000e-81 313
28 TraesCS2B01G428900 chr1D 90.909 176 15 1 2646 2821 470861928 470861754 5.690000e-58 235
29 TraesCS2B01G428900 chr3D 79.949 394 66 10 67 453 378569488 378569875 9.320000e-71 278
30 TraesCS2B01G428900 chr4D 81.609 348 48 8 67 400 72526470 72526815 1.210000e-69 274
31 TraesCS2B01G428900 chr4D 92.090 177 12 2 2646 2821 35722481 35722306 7.310000e-62 248
32 TraesCS2B01G428900 chr4D 90.323 186 15 3 2638 2821 163743120 163743304 1.220000e-59 241
33 TraesCS2B01G428900 chr7D 90.374 187 15 3 2636 2821 33817991 33817807 3.400000e-60 243
34 TraesCS2B01G428900 chr7D 91.477 176 15 0 2646 2821 452688188 452688013 3.400000e-60 243
35 TraesCS2B01G428900 chr5D 91.525 177 13 2 2646 2821 536316512 536316687 3.400000e-60 243
36 TraesCS2B01G428900 chr3B 91.111 180 14 2 2642 2821 766377066 766376889 3.400000e-60 243
37 TraesCS2B01G428900 chr7B 89.840 187 17 2 2646 2832 402670005 402670189 4.400000e-59 239
38 TraesCS2B01G428900 chr7B 97.222 72 2 0 1 72 513262688 513262759 4.620000e-24 122
39 TraesCS2B01G428900 chr5B 77.577 388 69 7 74 446 495004088 495004472 5.730000e-53 219
40 TraesCS2B01G428900 chrUn 97.222 72 2 0 1 72 118914629 118914558 4.620000e-24 122
41 TraesCS2B01G428900 chr6B 97.222 72 2 0 1 72 30331040 30331111 4.620000e-24 122
42 TraesCS2B01G428900 chr6A 97.222 72 2 0 1 72 229776655 229776584 4.620000e-24 122
43 TraesCS2B01G428900 chr5A 97.222 72 2 0 1 72 480130639 480130568 4.620000e-24 122
44 TraesCS2B01G428900 chr4B 97.222 72 2 0 1 72 47042747 47042818 4.620000e-24 122


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G428900 chr2B 615919749 615923158 3409 False 6298.0 6298 100.0000 1 3410 1 chr2B.!!$F4 3409
1 TraesCS2B01G428900 chr2B 615908645 615909332 687 False 1236.0 1236 99.1280 67 753 1 chr2B.!!$F3 686
2 TraesCS2B01G428900 chr2B 694944110 694945378 1268 False 590.0 590 75.6340 1037 2308 1 chr2B.!!$F5 1271
3 TraesCS2B01G428900 chr2B 615578571 615579172 601 False 436.0 436 79.9670 1767 2368 1 chr2B.!!$F1 601
4 TraesCS2B01G428900 chr2A 668011416 668013504 2088 False 2896.0 2896 91.4700 489 2639 1 chr2A.!!$F3 2150
5 TraesCS2B01G428900 chr2A 667942235 667943572 1337 False 588.0 588 75.3100 1037 2368 1 chr2A.!!$F2 1331
6 TraesCS2B01G428900 chr2A 668030787 668031318 531 False 505.0 505 84.1190 2839 3399 1 chr2A.!!$F4 560
7 TraesCS2B01G428900 chr2A 715807546 715808090 544 False 403.0 403 80.1090 1764 2308 1 chr2A.!!$F5 544
8 TraesCS2B01G428900 chr2D 522910651 522913252 2601 False 1170.0 2512 89.4970 444 3281 3 chr2D.!!$F6 2837
9 TraesCS2B01G428900 chr2D 522630303 522631064 761 False 446.0 446 77.6210 1598 2368 1 chr2D.!!$F1 770
10 TraesCS2B01G428900 chr2D 577607990 577608636 646 True 403.0 403 78.0670 1764 2410 1 chr2D.!!$R2 646
11 TraesCS2B01G428900 chr2D 522689396 522690766 1370 False 357.5 424 78.0575 1037 2410 2 chr2D.!!$F5 1373

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
852 873 0.032678 CCGGTCTGATCGCTAGCAAT 59.967 55.0 16.45 0.11 0.0 3.56 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2598 2674 1.065926 CAGACTGCATGCTAGGACCAA 60.066 52.381 20.33 0.0 0.0 3.67 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 6.975196 TCCTTTTTGTCAAAATGATCCAGA 57.025 33.333 20.09 9.38 31.28 3.86
24 25 6.985117 TCCTTTTTGTCAAAATGATCCAGAG 58.015 36.000 20.09 9.34 31.28 3.35
25 26 6.015180 TCCTTTTTGTCAAAATGATCCAGAGG 60.015 38.462 20.09 16.03 31.28 3.69
26 27 6.239402 CCTTTTTGTCAAAATGATCCAGAGGT 60.239 38.462 20.09 0.00 31.28 3.85
27 28 7.039784 CCTTTTTGTCAAAATGATCCAGAGGTA 60.040 37.037 20.09 0.00 31.28 3.08
28 29 7.452880 TTTTGTCAAAATGATCCAGAGGTAG 57.547 36.000 6.65 0.00 0.00 3.18
29 30 5.762179 TGTCAAAATGATCCAGAGGTAGT 57.238 39.130 0.00 0.00 0.00 2.73
30 31 5.734720 TGTCAAAATGATCCAGAGGTAGTC 58.265 41.667 0.00 0.00 0.00 2.59
31 32 5.485353 TGTCAAAATGATCCAGAGGTAGTCT 59.515 40.000 0.00 0.00 35.00 3.24
32 33 6.013379 TGTCAAAATGATCCAGAGGTAGTCTT 60.013 38.462 0.00 0.00 30.64 3.01
33 34 6.881602 GTCAAAATGATCCAGAGGTAGTCTTT 59.118 38.462 0.00 0.00 30.64 2.52
34 35 7.391833 GTCAAAATGATCCAGAGGTAGTCTTTT 59.608 37.037 0.00 0.00 30.64 2.27
35 36 7.944554 TCAAAATGATCCAGAGGTAGTCTTTTT 59.055 33.333 0.00 0.00 30.64 1.94
53 54 4.844998 TTTTTGTCAATTCATCTCGGCA 57.155 36.364 0.00 0.00 0.00 5.69
54 55 4.424061 TTTTGTCAATTCATCTCGGCAG 57.576 40.909 0.00 0.00 0.00 4.85
55 56 2.028420 TGTCAATTCATCTCGGCAGG 57.972 50.000 0.00 0.00 0.00 4.85
56 57 1.303309 GTCAATTCATCTCGGCAGGG 58.697 55.000 0.00 0.00 0.00 4.45
57 58 0.181114 TCAATTCATCTCGGCAGGGG 59.819 55.000 0.00 0.00 0.00 4.79
58 59 0.820891 CAATTCATCTCGGCAGGGGG 60.821 60.000 0.00 0.00 0.00 5.40
59 60 1.281925 AATTCATCTCGGCAGGGGGT 61.282 55.000 0.00 0.00 0.00 4.95
60 61 1.700042 ATTCATCTCGGCAGGGGGTC 61.700 60.000 0.00 0.00 0.00 4.46
61 62 3.866582 CATCTCGGCAGGGGGTCC 61.867 72.222 0.00 0.00 0.00 4.46
62 63 4.095400 ATCTCGGCAGGGGGTCCT 62.095 66.667 0.00 0.00 46.26 3.85
63 64 3.642741 ATCTCGGCAGGGGGTCCTT 62.643 63.158 0.00 0.00 42.67 3.36
64 65 3.330720 CTCGGCAGGGGGTCCTTT 61.331 66.667 0.00 0.00 42.67 3.11
65 66 2.856988 TCGGCAGGGGGTCCTTTT 60.857 61.111 0.00 0.00 42.67 2.27
66 67 2.361230 CGGCAGGGGGTCCTTTTC 60.361 66.667 0.00 0.00 42.67 2.29
67 68 2.361230 GGCAGGGGGTCCTTTTCG 60.361 66.667 0.00 0.00 42.67 3.46
68 69 2.754375 GCAGGGGGTCCTTTTCGA 59.246 61.111 0.00 0.00 42.67 3.71
69 70 1.674651 GCAGGGGGTCCTTTTCGAC 60.675 63.158 0.00 0.00 42.67 4.20
70 71 1.758592 CAGGGGGTCCTTTTCGACA 59.241 57.895 0.00 0.00 42.67 4.35
71 72 0.109723 CAGGGGGTCCTTTTCGACAA 59.890 55.000 0.00 0.00 42.67 3.18
72 73 0.109913 AGGGGGTCCTTTTCGACAAC 59.890 55.000 0.00 0.00 41.56 3.32
73 74 1.232621 GGGGGTCCTTTTCGACAACG 61.233 60.000 0.00 0.00 41.26 4.10
192 194 1.539496 GCAGTGTGAACCGTGGAACTA 60.539 52.381 0.00 0.00 31.75 2.24
788 805 4.308458 CCCACTTCCGACCGCACA 62.308 66.667 0.00 0.00 0.00 4.57
819 840 6.613271 ACATCTACAGAATGACTAATGGGACT 59.387 38.462 0.00 0.00 39.69 3.85
830 851 0.676782 AATGGGACTGGCTAACGTGC 60.677 55.000 0.00 0.00 0.00 5.34
839 860 3.387947 CTAACGTGCCCCCGGTCT 61.388 66.667 0.00 0.00 0.00 3.85
840 861 3.659089 CTAACGTGCCCCCGGTCTG 62.659 68.421 0.00 0.00 0.00 3.51
843 864 4.530857 CGTGCCCCCGGTCTGATC 62.531 72.222 0.00 0.00 0.00 2.92
844 865 4.530857 GTGCCCCCGGTCTGATCG 62.531 72.222 2.72 2.72 0.00 3.69
847 868 2.520982 CCCCCGGTCTGATCGCTA 60.521 66.667 4.46 0.00 0.00 4.26
848 869 2.565645 CCCCCGGTCTGATCGCTAG 61.566 68.421 4.46 0.00 0.00 3.42
849 870 2.336809 CCCGGTCTGATCGCTAGC 59.663 66.667 4.06 4.06 0.00 3.42
850 871 2.490148 CCCGGTCTGATCGCTAGCA 61.490 63.158 16.45 2.17 0.00 3.49
851 872 1.437573 CCGGTCTGATCGCTAGCAA 59.562 57.895 16.45 0.00 0.00 3.91
852 873 0.032678 CCGGTCTGATCGCTAGCAAT 59.967 55.000 16.45 0.11 0.00 3.56
853 874 1.539065 CCGGTCTGATCGCTAGCAATT 60.539 52.381 16.45 0.00 0.00 2.32
854 875 2.288213 CCGGTCTGATCGCTAGCAATTA 60.288 50.000 16.45 0.00 0.00 1.40
855 876 3.381045 CGGTCTGATCGCTAGCAATTAA 58.619 45.455 16.45 0.00 0.00 1.40
890 911 2.893637 CTACACGCCTCTACAAATGCT 58.106 47.619 0.00 0.00 0.00 3.79
906 930 3.414700 CTGTTGCACGGTCGCCTC 61.415 66.667 0.00 0.00 0.00 4.70
956 984 2.262603 CTAGCAGTCCAGCACGCA 59.737 61.111 0.00 0.00 36.85 5.24
968 996 2.476051 CACGCAATCAGACGGTGC 59.524 61.111 0.00 0.00 34.87 5.01
1558 1586 0.545548 ACCTGAGTCCTTCCTCACCC 60.546 60.000 0.00 0.00 36.57 4.61
1571 1599 0.393537 CTCACCCAGGAGTTCATGGC 60.394 60.000 7.29 0.00 45.74 4.40
1575 1603 2.110967 CCAGGAGTTCATGGCGCTG 61.111 63.158 7.64 0.00 41.16 5.18
1692 1741 2.342279 CTGTCCCTCGACGGCAAA 59.658 61.111 0.00 0.00 42.37 3.68
1694 1743 1.291877 CTGTCCCTCGACGGCAAAAG 61.292 60.000 0.00 0.00 42.37 2.27
1731 1780 2.524306 CCATTAAACCCACTGCTGGAA 58.476 47.619 0.00 0.00 40.55 3.53
1732 1781 3.099141 CCATTAAACCCACTGCTGGAAT 58.901 45.455 0.00 0.00 40.55 3.01
1806 1882 4.047834 CTTGACAAGCAGCCGACA 57.952 55.556 1.43 0.00 0.00 4.35
2100 2176 2.031012 CACTGCGGCTGGAACTCA 59.969 61.111 11.64 0.00 0.00 3.41
2437 2513 3.689161 TGATTGGCGTCAATAAACTCTGG 59.311 43.478 16.53 0.00 43.08 3.86
2439 2515 3.410631 TGGCGTCAATAAACTCTGGAA 57.589 42.857 0.00 0.00 0.00 3.53
2482 2558 1.737029 GCAGCGTCAATCAGAGCAGTA 60.737 52.381 0.00 0.00 0.00 2.74
2483 2559 1.923204 CAGCGTCAATCAGAGCAGTAC 59.077 52.381 0.00 0.00 0.00 2.73
2598 2674 1.554160 CAGCACTCTGAAGTCCATCCT 59.446 52.381 0.00 0.00 42.95 3.24
2613 2689 1.134007 CATCCTTGGTCCTAGCATGCA 60.134 52.381 21.98 5.01 0.00 3.96
2631 2707 5.335897 GCATGCAGTCTGAAAGGACAAATTA 60.336 40.000 14.21 0.00 38.57 1.40
2639 2715 7.836183 AGTCTGAAAGGACAAATTATGCCTATT 59.164 33.333 0.00 0.00 38.57 1.73
2640 2716 8.131731 GTCTGAAAGGACAAATTATGCCTATTC 58.868 37.037 0.00 0.00 35.38 1.75
2641 2717 8.055181 TCTGAAAGGACAAATTATGCCTATTCT 58.945 33.333 0.00 0.00 35.38 2.40
2642 2718 9.342308 CTGAAAGGACAAATTATGCCTATTCTA 57.658 33.333 0.00 0.00 35.38 2.10
2643 2719 9.120538 TGAAAGGACAAATTATGCCTATTCTAC 57.879 33.333 0.00 0.00 35.38 2.59
2644 2720 7.730364 AAGGACAAATTATGCCTATTCTACG 57.270 36.000 0.00 0.00 35.38 3.51
2645 2721 6.231211 AGGACAAATTATGCCTATTCTACGG 58.769 40.000 0.00 0.00 34.89 4.02
2647 2723 6.485648 GGACAAATTATGCCTATTCTACGGTT 59.514 38.462 0.00 0.00 0.00 4.44
2648 2724 7.012989 GGACAAATTATGCCTATTCTACGGTTT 59.987 37.037 0.00 0.00 0.00 3.27
2649 2725 7.703328 ACAAATTATGCCTATTCTACGGTTTG 58.297 34.615 0.00 0.00 0.00 2.93
2650 2726 7.338449 ACAAATTATGCCTATTCTACGGTTTGT 59.662 33.333 0.00 0.00 32.12 2.83
2651 2727 7.492352 AATTATGCCTATTCTACGGTTTGTC 57.508 36.000 0.00 0.00 0.00 3.18
2652 2728 4.755266 ATGCCTATTCTACGGTTTGTCT 57.245 40.909 0.00 0.00 0.00 3.41
2653 2729 5.864418 ATGCCTATTCTACGGTTTGTCTA 57.136 39.130 0.00 0.00 0.00 2.59
2654 2730 5.664294 TGCCTATTCTACGGTTTGTCTAA 57.336 39.130 0.00 0.00 0.00 2.10
2655 2731 6.229936 TGCCTATTCTACGGTTTGTCTAAT 57.770 37.500 0.00 0.00 0.00 1.73
2656 2732 6.646267 TGCCTATTCTACGGTTTGTCTAATT 58.354 36.000 0.00 0.00 0.00 1.40
2657 2733 6.759827 TGCCTATTCTACGGTTTGTCTAATTC 59.240 38.462 0.00 0.00 0.00 2.17
2658 2734 6.759827 GCCTATTCTACGGTTTGTCTAATTCA 59.240 38.462 0.00 0.00 0.00 2.57
2659 2735 7.254353 GCCTATTCTACGGTTTGTCTAATTCAC 60.254 40.741 0.00 0.00 0.00 3.18
2660 2736 7.762615 CCTATTCTACGGTTTGTCTAATTCACA 59.237 37.037 0.00 0.00 0.00 3.58
2661 2737 9.314321 CTATTCTACGGTTTGTCTAATTCACAT 57.686 33.333 0.00 0.00 0.00 3.21
2662 2738 7.591006 TTCTACGGTTTGTCTAATTCACATC 57.409 36.000 0.00 0.00 0.00 3.06
2663 2739 6.931838 TCTACGGTTTGTCTAATTCACATCT 58.068 36.000 0.00 0.00 0.00 2.90
2664 2740 8.058667 TCTACGGTTTGTCTAATTCACATCTA 57.941 34.615 0.00 0.00 0.00 1.98
2665 2741 8.188799 TCTACGGTTTGTCTAATTCACATCTAG 58.811 37.037 0.00 0.00 0.00 2.43
2666 2742 6.931838 ACGGTTTGTCTAATTCACATCTAGA 58.068 36.000 0.00 0.00 0.00 2.43
2667 2743 7.556844 ACGGTTTGTCTAATTCACATCTAGAT 58.443 34.615 0.00 0.00 0.00 1.98
2668 2744 7.492669 ACGGTTTGTCTAATTCACATCTAGATG 59.507 37.037 27.63 27.63 44.15 2.90
2699 2775 9.589461 TTTAAGGATGTTACATTTAAACTCCCA 57.411 29.630 9.56 0.00 30.67 4.37
2700 2776 9.762381 TTAAGGATGTTACATTTAAACTCCCAT 57.238 29.630 0.00 0.00 30.67 4.00
2702 2778 9.762381 AAGGATGTTACATTTAAACTCCCATAA 57.238 29.630 0.00 0.00 30.67 1.90
2703 2779 9.762381 AGGATGTTACATTTAAACTCCCATAAA 57.238 29.630 0.00 0.00 30.67 1.40
2717 2793 8.938801 AACTCCCATAAATACATAATGCATCA 57.061 30.769 0.00 0.00 0.00 3.07
2718 2794 8.938801 ACTCCCATAAATACATAATGCATCAA 57.061 30.769 0.00 0.00 0.00 2.57
2719 2795 8.796475 ACTCCCATAAATACATAATGCATCAAC 58.204 33.333 0.00 0.00 0.00 3.18
2720 2796 8.938801 TCCCATAAATACATAATGCATCAACT 57.061 30.769 0.00 0.00 0.00 3.16
2731 2807 9.979578 ACATAATGCATCAACTAGAAACAAAAA 57.020 25.926 0.00 0.00 0.00 1.94
2774 2850 2.225019 CACAAACAGAGTGGACATCAGC 59.775 50.000 0.00 0.00 33.43 4.26
2775 2851 2.105477 ACAAACAGAGTGGACATCAGCT 59.895 45.455 0.00 0.00 0.00 4.24
2776 2852 3.144506 CAAACAGAGTGGACATCAGCTT 58.855 45.455 0.00 0.00 0.00 3.74
2777 2853 4.202357 ACAAACAGAGTGGACATCAGCTTA 60.202 41.667 0.00 0.00 0.00 3.09
2778 2854 3.883830 ACAGAGTGGACATCAGCTTAG 57.116 47.619 0.00 0.00 0.00 2.18
2779 2855 3.435275 ACAGAGTGGACATCAGCTTAGA 58.565 45.455 0.00 0.00 0.00 2.10
2780 2856 4.029520 ACAGAGTGGACATCAGCTTAGAT 58.970 43.478 0.00 0.00 0.00 1.98
2790 2866 5.261370 CATCAGCTTAGATGCGACATAAC 57.739 43.478 1.44 0.00 38.98 1.89
2791 2867 4.655762 TCAGCTTAGATGCGACATAACT 57.344 40.909 0.00 0.00 38.13 2.24
2792 2868 5.767816 TCAGCTTAGATGCGACATAACTA 57.232 39.130 0.00 0.00 38.13 2.24
2793 2869 6.332735 TCAGCTTAGATGCGACATAACTAT 57.667 37.500 0.00 0.00 38.13 2.12
2794 2870 6.152379 TCAGCTTAGATGCGACATAACTATG 58.848 40.000 0.00 0.00 37.59 2.23
2819 2895 4.517952 CATCTAGATGTGCCCTAGACAG 57.482 50.000 22.42 0.00 43.57 3.51
2894 2975 8.887036 ACTTTGGTTTAAAAGATTTGACCATC 57.113 30.769 11.26 0.00 39.12 3.51
2895 2976 8.704668 ACTTTGGTTTAAAAGATTTGACCATCT 58.295 29.630 11.26 0.00 39.12 2.90
2896 2977 9.546428 CTTTGGTTTAAAAGATTTGACCATCTT 57.454 29.630 11.26 0.00 44.05 2.40
2936 3017 9.988350 ATGTGTACAACTCGAAATATTCAAATC 57.012 29.630 0.00 0.00 0.00 2.17
2945 3026 8.246180 ACTCGAAATATTCAAATCTGCAAACAT 58.754 29.630 0.00 0.00 0.00 2.71
2975 3056 4.114794 CGTAGTAAATCTTAACCCCGTGG 58.885 47.826 0.00 0.00 37.80 4.94
3121 3211 7.973944 ACTGGTTATTCTTTTGTGTTGTTCTTC 59.026 33.333 0.00 0.00 0.00 2.87
3122 3212 6.970043 TGGTTATTCTTTTGTGTTGTTCTTCG 59.030 34.615 0.00 0.00 0.00 3.79
3148 3240 6.448207 TGATGTGAGACTCATCAGAAGTAG 57.552 41.667 8.73 0.00 44.14 2.57
3156 3249 6.055588 AGACTCATCAGAAGTAGAGACTAGC 58.944 44.000 0.00 0.00 33.58 3.42
3200 3293 0.528470 AGACCGCTGACACTAGCTTC 59.472 55.000 0.00 0.00 41.51 3.86
3205 3298 1.893786 CTGACACTAGCTTCGGCCT 59.106 57.895 0.00 0.00 43.01 5.19
3236 3329 6.756074 TGATTTGACCAAACAAACTTCACATC 59.244 34.615 0.00 0.00 41.49 3.06
3251 3344 4.707030 TCACATCCAATTCATGTTGCTC 57.293 40.909 0.00 0.00 31.83 4.26
3268 3361 5.882000 TGTTGCTCTAGTATGCATGTTTCAT 59.118 36.000 10.16 0.00 39.07 2.57
3272 3365 7.829725 TGCTCTAGTATGCATGTTTCATTTTT 58.170 30.769 10.16 0.00 33.94 1.94
3308 3401 7.589958 TGTCCTCTTCTATAAAGATCCAGTC 57.410 40.000 0.00 0.00 0.00 3.51
3329 3422 1.048160 CCCCTGGTGTGGCAAAAACT 61.048 55.000 0.00 0.00 0.00 2.66
3340 3433 1.683385 GGCAAAAACTTCCTCTGCACT 59.317 47.619 0.00 0.00 34.66 4.40
3347 3440 2.157738 ACTTCCTCTGCACTTTGATGC 58.842 47.619 0.00 0.00 46.32 3.91
3364 3457 5.458041 TGATGCATTCGATACTCATGAGA 57.542 39.130 29.27 12.98 0.00 3.27
3369 3462 4.625028 CATTCGATACTCATGAGAGGCAA 58.375 43.478 29.27 14.01 46.44 4.52
3373 3466 3.305267 CGATACTCATGAGAGGCAAGAGG 60.305 52.174 29.27 0.00 44.50 3.69
3392 3485 4.221482 AGAGGGCAATTGGACATTTCTTTC 59.779 41.667 7.72 0.00 0.00 2.62
3399 3492 6.704310 CAATTGGACATTTCTTTCCCAAGAT 58.296 36.000 0.00 0.00 38.89 2.40
3400 3493 5.726980 TTGGACATTTCTTTCCCAAGATG 57.273 39.130 0.00 0.00 38.89 2.90
3401 3494 4.996793 TGGACATTTCTTTCCCAAGATGA 58.003 39.130 0.00 0.00 38.89 2.92
3402 3495 5.392995 TGGACATTTCTTTCCCAAGATGAA 58.607 37.500 0.00 0.00 38.89 2.57
3403 3496 5.837979 TGGACATTTCTTTCCCAAGATGAAA 59.162 36.000 0.00 0.00 38.89 2.69
3404 3497 6.497954 TGGACATTTCTTTCCCAAGATGAAAT 59.502 34.615 0.00 0.00 38.89 2.17
3405 3498 7.016465 TGGACATTTCTTTCCCAAGATGAAATT 59.984 33.333 0.00 0.00 38.89 1.82
3406 3499 7.879677 GGACATTTCTTTCCCAAGATGAAATTT 59.120 33.333 0.00 0.00 38.89 1.82
3407 3500 9.276590 GACATTTCTTTCCCAAGATGAAATTTT 57.723 29.630 0.00 0.00 38.89 1.82
3408 3501 9.631257 ACATTTCTTTCCCAAGATGAAATTTTT 57.369 25.926 0.00 0.00 38.89 1.94
3409 3502 9.887406 CATTTCTTTCCCAAGATGAAATTTTTG 57.113 29.630 0.00 0.00 38.89 2.44
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.015180 CCTCTGGATCATTTTGACAAAAAGGA 60.015 38.462 16.85 16.45 46.59 3.36
1 2 6.161381 CCTCTGGATCATTTTGACAAAAAGG 58.839 40.000 16.85 12.15 38.62 3.11
2 3 6.752168 ACCTCTGGATCATTTTGACAAAAAG 58.248 36.000 16.85 12.82 38.62 2.27
3 4 6.729690 ACCTCTGGATCATTTTGACAAAAA 57.270 33.333 16.85 2.62 39.53 1.94
4 5 7.004086 ACTACCTCTGGATCATTTTGACAAAA 58.996 34.615 15.39 15.39 34.41 2.44
5 6 6.542821 ACTACCTCTGGATCATTTTGACAAA 58.457 36.000 0.00 0.00 0.00 2.83
6 7 6.013379 AGACTACCTCTGGATCATTTTGACAA 60.013 38.462 0.00 0.00 0.00 3.18
7 8 5.485353 AGACTACCTCTGGATCATTTTGACA 59.515 40.000 0.00 0.00 0.00 3.58
8 9 5.983540 AGACTACCTCTGGATCATTTTGAC 58.016 41.667 0.00 0.00 0.00 3.18
9 10 6.627087 AAGACTACCTCTGGATCATTTTGA 57.373 37.500 0.00 0.00 0.00 2.69
10 11 7.693969 AAAAGACTACCTCTGGATCATTTTG 57.306 36.000 0.00 0.00 0.00 2.44
32 33 4.321156 CCTGCCGAGATGAATTGACAAAAA 60.321 41.667 0.00 0.00 0.00 1.94
33 34 3.191162 CCTGCCGAGATGAATTGACAAAA 59.809 43.478 0.00 0.00 0.00 2.44
34 35 2.749076 CCTGCCGAGATGAATTGACAAA 59.251 45.455 0.00 0.00 0.00 2.83
35 36 2.358957 CCTGCCGAGATGAATTGACAA 58.641 47.619 0.00 0.00 0.00 3.18
36 37 1.407299 CCCTGCCGAGATGAATTGACA 60.407 52.381 0.00 0.00 0.00 3.58
37 38 1.303309 CCCTGCCGAGATGAATTGAC 58.697 55.000 0.00 0.00 0.00 3.18
38 39 0.181114 CCCCTGCCGAGATGAATTGA 59.819 55.000 0.00 0.00 0.00 2.57
39 40 0.820891 CCCCCTGCCGAGATGAATTG 60.821 60.000 0.00 0.00 0.00 2.32
40 41 1.281925 ACCCCCTGCCGAGATGAATT 61.282 55.000 0.00 0.00 0.00 2.17
41 42 1.694169 ACCCCCTGCCGAGATGAAT 60.694 57.895 0.00 0.00 0.00 2.57
42 43 2.285368 ACCCCCTGCCGAGATGAA 60.285 61.111 0.00 0.00 0.00 2.57
43 44 2.764128 GACCCCCTGCCGAGATGA 60.764 66.667 0.00 0.00 0.00 2.92
44 45 3.866582 GGACCCCCTGCCGAGATG 61.867 72.222 0.00 0.00 0.00 2.90
45 46 3.642741 AAGGACCCCCTGCCGAGAT 62.643 63.158 0.00 0.00 43.48 2.75
46 47 3.864983 AAAGGACCCCCTGCCGAGA 62.865 63.158 0.00 0.00 43.48 4.04
47 48 2.821679 GAAAAGGACCCCCTGCCGAG 62.822 65.000 0.00 0.00 43.48 4.63
48 49 2.856988 AAAAGGACCCCCTGCCGA 60.857 61.111 0.00 0.00 43.48 5.54
49 50 2.361230 GAAAAGGACCCCCTGCCG 60.361 66.667 0.00 0.00 43.48 5.69
50 51 2.361230 CGAAAAGGACCCCCTGCC 60.361 66.667 0.00 0.00 43.48 4.85
51 52 1.674651 GTCGAAAAGGACCCCCTGC 60.675 63.158 0.00 0.00 43.48 4.85
52 53 0.109723 TTGTCGAAAAGGACCCCCTG 59.890 55.000 0.00 0.00 43.48 4.45
53 54 3.586645 CGTTGTCGAAAAGGACCCCCT 62.587 57.143 1.66 0.00 41.50 4.79
54 55 1.232621 CGTTGTCGAAAAGGACCCCC 61.233 60.000 1.66 0.00 39.71 5.40
55 56 0.249996 TCGTTGTCGAAAAGGACCCC 60.250 55.000 6.63 0.00 43.34 4.95
56 57 3.294079 TCGTTGTCGAAAAGGACCC 57.706 52.632 6.63 0.00 43.34 4.46
65 66 1.204228 GCTGTTGTCGTCGTTGTCGA 61.204 55.000 0.00 0.00 44.12 4.20
66 67 1.198397 GCTGTTGTCGTCGTTGTCG 59.802 57.895 0.00 0.00 38.55 4.35
67 68 1.198397 CGCTGTTGTCGTCGTTGTC 59.802 57.895 0.00 0.00 0.00 3.18
68 69 2.235016 CCGCTGTTGTCGTCGTTGT 61.235 57.895 0.00 0.00 0.00 3.32
69 70 2.544359 CCGCTGTTGTCGTCGTTG 59.456 61.111 0.00 0.00 0.00 4.10
70 71 3.335534 GCCGCTGTTGTCGTCGTT 61.336 61.111 0.00 0.00 0.00 3.85
73 74 3.414700 CTGGCCGCTGTTGTCGTC 61.415 66.667 0.00 0.00 0.00 4.20
74 75 4.235762 ACTGGCCGCTGTTGTCGT 62.236 61.111 0.00 0.00 0.00 4.34
75 76 3.716006 CACTGGCCGCTGTTGTCG 61.716 66.667 0.00 0.00 0.00 4.35
76 77 1.845809 CTTCACTGGCCGCTGTTGTC 61.846 60.000 0.00 0.00 0.00 3.18
192 194 2.123897 ACGGCCACAAAACAGCCT 60.124 55.556 2.24 0.00 44.84 4.58
788 805 5.899120 AGTCATTCTGTAGATGTACGTGT 57.101 39.130 0.00 0.00 30.95 4.49
830 851 2.520982 TAGCGATCAGACCGGGGG 60.521 66.667 6.32 0.00 0.00 5.40
834 855 1.858091 AATTGCTAGCGATCAGACCG 58.142 50.000 17.97 0.00 0.00 4.79
836 857 3.182572 CGGTTAATTGCTAGCGATCAGAC 59.817 47.826 17.97 15.05 37.44 3.51
837 858 3.381045 CGGTTAATTGCTAGCGATCAGA 58.619 45.455 17.97 4.18 37.44 3.27
838 859 2.476619 CCGGTTAATTGCTAGCGATCAG 59.523 50.000 17.97 6.61 37.44 2.90
839 860 2.479837 CCGGTTAATTGCTAGCGATCA 58.520 47.619 17.97 0.00 37.44 2.92
840 861 1.194772 GCCGGTTAATTGCTAGCGATC 59.805 52.381 17.97 5.80 37.44 3.69
841 862 1.226746 GCCGGTTAATTGCTAGCGAT 58.773 50.000 11.98 11.98 37.44 4.58
842 863 0.108089 TGCCGGTTAATTGCTAGCGA 60.108 50.000 7.23 7.23 37.44 4.93
843 864 0.304705 CTGCCGGTTAATTGCTAGCG 59.695 55.000 10.77 0.00 35.24 4.26
844 865 1.330829 GACTGCCGGTTAATTGCTAGC 59.669 52.381 8.10 8.10 0.00 3.42
845 866 2.351726 GTGACTGCCGGTTAATTGCTAG 59.648 50.000 1.90 0.00 0.00 3.42
846 867 2.352388 GTGACTGCCGGTTAATTGCTA 58.648 47.619 1.90 0.00 0.00 3.49
847 868 1.165270 GTGACTGCCGGTTAATTGCT 58.835 50.000 1.90 0.00 0.00 3.91
848 869 0.179200 CGTGACTGCCGGTTAATTGC 60.179 55.000 1.90 0.00 0.00 3.56
849 870 1.136085 CACGTGACTGCCGGTTAATTG 60.136 52.381 10.90 0.00 0.00 2.32
850 871 1.153353 CACGTGACTGCCGGTTAATT 58.847 50.000 10.90 0.00 0.00 1.40
851 872 1.296056 GCACGTGACTGCCGGTTAAT 61.296 55.000 22.23 0.00 0.00 1.40
852 873 1.957186 GCACGTGACTGCCGGTTAA 60.957 57.895 22.23 0.00 0.00 2.01
853 874 1.525718 TAGCACGTGACTGCCGGTTA 61.526 55.000 22.23 0.00 37.96 2.85
854 875 2.863346 TAGCACGTGACTGCCGGTT 61.863 57.895 22.23 0.00 37.96 4.44
855 876 3.299977 TAGCACGTGACTGCCGGT 61.300 61.111 22.23 0.00 37.96 5.28
879 900 1.535028 CCGTGCAACAGCATTTGTAGA 59.465 47.619 0.00 0.00 39.73 2.59
890 911 3.923864 AGAGGCGACCGTGCAACA 61.924 61.111 0.00 0.00 35.74 3.33
906 930 1.825090 TTACAGGTTCTGCATGCCAG 58.175 50.000 16.68 12.67 43.17 4.85
934 962 0.321122 GTGCTGGACTGCTAGTGCTT 60.321 55.000 8.69 0.00 37.46 3.91
978 1006 4.154347 CAGCAGTCCCGCCTCTCC 62.154 72.222 0.00 0.00 0.00 3.71
982 1010 0.397254 ATAGTACAGCAGTCCCGCCT 60.397 55.000 0.00 0.00 0.00 5.52
986 1014 1.069358 GAGCCATAGTACAGCAGTCCC 59.931 57.143 0.00 0.00 0.00 4.46
1215 1243 3.399181 GGGATGTCGAGGGTGGCA 61.399 66.667 0.00 0.00 0.00 4.92
1296 1324 1.729838 GCAGAACGCGTCGAAGAGT 60.730 57.895 14.44 1.35 36.95 3.24
1542 1570 0.545309 CCTGGGTGAGGAAGGACTCA 60.545 60.000 0.00 0.00 46.33 3.41
1558 1586 2.110967 CCAGCGCCATGAACTCCTG 61.111 63.158 2.29 0.00 0.00 3.86
1692 1741 1.078143 GCCGATGGAGAACAGCCTT 60.078 57.895 0.00 0.00 29.76 4.35
1694 1743 2.514824 GGCCGATGGAGAACAGCC 60.515 66.667 0.00 0.00 31.76 4.85
1698 1747 2.341846 TTAATGGGCCGATGGAGAAC 57.658 50.000 0.00 0.00 0.00 3.01
1806 1882 2.808202 GCATAGGAACAGCACCGATGAT 60.808 50.000 0.00 0.00 40.98 2.45
1857 1933 3.474570 GCCAGCTCCCCGATCTGT 61.475 66.667 0.00 0.00 0.00 3.41
2100 2176 3.076092 CTCAGCCCTTCCAGCAGT 58.924 61.111 0.00 0.00 0.00 4.40
2598 2674 1.065926 CAGACTGCATGCTAGGACCAA 60.066 52.381 20.33 0.00 0.00 3.67
2613 2689 5.574188 AGGCATAATTTGTCCTTTCAGACT 58.426 37.500 0.00 0.00 37.66 3.24
2631 2707 4.755266 AGACAAACCGTAGAATAGGCAT 57.245 40.909 0.00 0.00 0.00 4.40
2639 2715 6.931838 AGATGTGAATTAGACAAACCGTAGA 58.068 36.000 0.00 0.00 0.00 2.59
2640 2716 8.188799 TCTAGATGTGAATTAGACAAACCGTAG 58.811 37.037 0.00 0.00 0.00 3.51
2641 2717 8.058667 TCTAGATGTGAATTAGACAAACCGTA 57.941 34.615 0.00 0.00 0.00 4.02
2642 2718 6.931838 TCTAGATGTGAATTAGACAAACCGT 58.068 36.000 0.00 0.00 0.00 4.83
2643 2719 7.845483 CATCTAGATGTGAATTAGACAAACCG 58.155 38.462 22.42 0.00 34.23 4.44
2673 2749 9.589461 TGGGAGTTTAAATGTAACATCCTTAAA 57.411 29.630 5.63 0.00 0.00 1.52
2674 2750 9.762381 ATGGGAGTTTAAATGTAACATCCTTAA 57.238 29.630 5.63 0.00 0.00 1.85
2676 2752 9.762381 TTATGGGAGTTTAAATGTAACATCCTT 57.238 29.630 5.63 0.00 0.00 3.36
2677 2753 9.762381 TTTATGGGAGTTTAAATGTAACATCCT 57.238 29.630 5.63 0.00 0.00 3.24
2691 2767 9.365906 TGATGCATTATGTATTTATGGGAGTTT 57.634 29.630 0.00 0.00 0.00 2.66
2692 2768 8.938801 TGATGCATTATGTATTTATGGGAGTT 57.061 30.769 0.00 0.00 0.00 3.01
2693 2769 8.796475 GTTGATGCATTATGTATTTATGGGAGT 58.204 33.333 0.00 0.00 0.00 3.85
2694 2770 9.017509 AGTTGATGCATTATGTATTTATGGGAG 57.982 33.333 0.00 0.00 0.00 4.30
2695 2771 8.938801 AGTTGATGCATTATGTATTTATGGGA 57.061 30.769 0.00 0.00 0.00 4.37
2705 2781 9.979578 TTTTTGTTTCTAGTTGATGCATTATGT 57.020 25.926 0.00 0.00 0.00 2.29
2753 2829 2.225019 GCTGATGTCCACTCTGTTTGTG 59.775 50.000 0.00 0.00 35.39 3.33
2754 2830 2.105477 AGCTGATGTCCACTCTGTTTGT 59.895 45.455 0.00 0.00 0.00 2.83
2755 2831 2.775890 AGCTGATGTCCACTCTGTTTG 58.224 47.619 0.00 0.00 0.00 2.93
2756 2832 3.498774 AAGCTGATGTCCACTCTGTTT 57.501 42.857 0.00 0.00 0.00 2.83
2757 2833 3.834813 TCTAAGCTGATGTCCACTCTGTT 59.165 43.478 0.00 0.00 0.00 3.16
2758 2834 3.435275 TCTAAGCTGATGTCCACTCTGT 58.565 45.455 0.00 0.00 0.00 3.41
2759 2835 4.370049 CATCTAAGCTGATGTCCACTCTG 58.630 47.826 5.99 0.00 39.05 3.35
2760 2836 3.181467 GCATCTAAGCTGATGTCCACTCT 60.181 47.826 13.80 0.00 44.02 3.24
2761 2837 3.129871 GCATCTAAGCTGATGTCCACTC 58.870 50.000 13.80 0.00 44.02 3.51
2762 2838 2.482664 CGCATCTAAGCTGATGTCCACT 60.483 50.000 13.80 0.00 44.02 4.00
2763 2839 1.863454 CGCATCTAAGCTGATGTCCAC 59.137 52.381 13.80 0.00 44.02 4.02
2764 2840 1.756538 TCGCATCTAAGCTGATGTCCA 59.243 47.619 13.80 0.00 44.02 4.02
2765 2841 2.131183 GTCGCATCTAAGCTGATGTCC 58.869 52.381 13.80 0.43 44.02 4.02
2766 2842 2.814269 TGTCGCATCTAAGCTGATGTC 58.186 47.619 13.80 7.00 44.02 3.06
2767 2843 2.967599 TGTCGCATCTAAGCTGATGT 57.032 45.000 13.80 0.00 44.02 3.06
2768 2844 4.987285 AGTTATGTCGCATCTAAGCTGATG 59.013 41.667 9.20 9.20 44.72 3.07
2769 2845 5.207110 AGTTATGTCGCATCTAAGCTGAT 57.793 39.130 0.00 0.00 0.00 2.90
2770 2846 4.655762 AGTTATGTCGCATCTAAGCTGA 57.344 40.909 0.00 0.00 0.00 4.26
2771 2847 5.923114 ACATAGTTATGTCGCATCTAAGCTG 59.077 40.000 0.00 0.00 42.96 4.24
2772 2848 6.090483 ACATAGTTATGTCGCATCTAAGCT 57.910 37.500 0.00 0.00 42.96 3.74
2798 2874 4.148079 TCTGTCTAGGGCACATCTAGATG 58.852 47.826 27.63 27.63 43.25 2.90
2799 2875 4.461450 TCTGTCTAGGGCACATCTAGAT 57.539 45.455 0.00 0.00 43.25 1.98
2800 2876 3.953542 TCTGTCTAGGGCACATCTAGA 57.046 47.619 0.00 0.00 40.38 2.43
2801 2877 4.832266 AGATTCTGTCTAGGGCACATCTAG 59.168 45.833 0.00 0.00 34.69 2.43
2802 2878 4.586421 CAGATTCTGTCTAGGGCACATCTA 59.414 45.833 5.46 0.00 34.69 1.98
2803 2879 3.387374 CAGATTCTGTCTAGGGCACATCT 59.613 47.826 5.46 0.00 34.69 2.90
2804 2880 3.133721 ACAGATTCTGTCTAGGGCACATC 59.866 47.826 13.61 0.00 41.21 3.06
2805 2881 3.110705 ACAGATTCTGTCTAGGGCACAT 58.889 45.455 13.61 0.00 41.21 3.21
2806 2882 2.540383 ACAGATTCTGTCTAGGGCACA 58.460 47.619 13.61 0.00 41.21 4.57
2807 2883 4.737855 TTACAGATTCTGTCTAGGGCAC 57.262 45.455 22.16 0.00 41.21 5.01
2808 2884 5.755409 TTTTACAGATTCTGTCTAGGGCA 57.245 39.130 22.16 0.84 41.21 5.36
2809 2885 5.463724 CGATTTTACAGATTCTGTCTAGGGC 59.536 44.000 22.16 8.55 41.21 5.19
2810 2886 5.463724 GCGATTTTACAGATTCTGTCTAGGG 59.536 44.000 22.16 10.12 41.21 3.53
2811 2887 6.019479 GTGCGATTTTACAGATTCTGTCTAGG 60.019 42.308 22.16 9.64 41.21 3.02
2812 2888 6.531594 TGTGCGATTTTACAGATTCTGTCTAG 59.468 38.462 22.16 10.41 41.21 2.43
2813 2889 6.394809 TGTGCGATTTTACAGATTCTGTCTA 58.605 36.000 22.16 9.65 41.21 2.59
2814 2890 5.237815 TGTGCGATTTTACAGATTCTGTCT 58.762 37.500 22.16 6.69 41.21 3.41
2815 2891 5.530519 TGTGCGATTTTACAGATTCTGTC 57.469 39.130 22.16 7.40 41.21 3.51
2897 2978 8.380644 CGAGTTGTACACATATTTTTCGAATCT 58.619 33.333 0.00 0.00 0.00 2.40
2919 3000 7.592938 TGTTTGCAGATTTGAATATTTCGAGT 58.407 30.769 0.00 0.00 0.00 4.18
2933 3014 2.032054 CGTGCGGATATGTTTGCAGATT 59.968 45.455 0.00 0.00 38.14 2.40
2936 3017 0.726827 ACGTGCGGATATGTTTGCAG 59.273 50.000 0.00 0.00 38.14 4.41
2945 3026 6.208644 GGTTAAGATTTACTACGTGCGGATA 58.791 40.000 0.00 0.00 0.00 2.59
3121 3211 2.817901 TGATGAGTCTCACATCATGCG 58.182 47.619 4.21 0.00 45.71 4.73
3174 3267 0.518636 GTGTCAGCGGTCTACACGTA 59.481 55.000 12.43 0.00 34.72 3.57
3200 3293 5.766150 TTGGTCAAATCATTATTAGGCCG 57.234 39.130 0.00 0.00 0.00 6.13
3236 3329 5.297527 TGCATACTAGAGCAACATGAATTGG 59.702 40.000 0.00 0.00 37.90 3.16
3272 3365 7.921041 ATAGAAGAGGACATACCATGAAGAA 57.079 36.000 0.00 0.00 42.04 2.52
3281 3374 9.084533 ACTGGATCTTTATAGAAGAGGACATAC 57.915 37.037 0.00 0.00 33.20 2.39
3340 3433 6.282930 TCTCATGAGTATCGAATGCATCAAA 58.717 36.000 21.92 0.00 38.61 2.69
3347 3440 4.248691 TGCCTCTCATGAGTATCGAATG 57.751 45.455 21.92 0.62 38.61 2.67
3348 3441 4.586421 TCTTGCCTCTCATGAGTATCGAAT 59.414 41.667 21.92 0.00 38.61 3.34
3364 3457 0.613012 GTCCAATTGCCCTCTTGCCT 60.613 55.000 0.00 0.00 0.00 4.75
3369 3462 3.463048 AGAAATGTCCAATTGCCCTCT 57.537 42.857 0.00 0.00 0.00 3.69
3373 3466 3.007831 TGGGAAAGAAATGTCCAATTGCC 59.992 43.478 0.00 0.00 35.44 4.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.